Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 420D
BPC Identified: 16
Ambiguities: 0
| dsRNA |
420D |
1!A:32!B |
G:C |
WC [cWW][XIX] |
10.56 |
50.18; 58.09 |
7.91 |
-13.82 |
0.05 |
17.63 |
| dsRNA |
420D |
2!A:31!B |
C:G |
WC [cWW][XIX] |
10.34 |
56.58; 53.23 |
3.35 |
-17.1 |
0.04 |
17.87 |
| dsRNA |
420D |
3!A:30!B |
A:U |
WC [cWW][XX] |
10.44 |
58.44; 51.27 |
7.17 |
-10.46 |
0.06 |
14.38 |
| dsRNA |
420D |
4!A:29!B |
G:C |
WC [cWW][XIX] |
10.57 |
54.79; 53.73 |
1.06 |
-7.41 |
0.13 |
14.41 |
| dsRNA |
420D |
5!A:28!B |
A:U |
WC [cWW][XX] |
10.4 |
57.51; 56.2 |
1.31 |
-7.26 |
0.06 |
12.46 |
| dsRNA |
420D |
6!A:27!B |
G:A |
H*_1 [cHW][-] |
10.54 |
41.37; 56.01 |
14.64 |
-16.0 |
0.36 |
21.17 |
| dsRNA |
420D |
7!A:26!B |
U:A |
WC [cWW][XX] |
10.25 |
58.1; 56.93 |
1.17 |
-9.65 |
0.19 |
13.61 |
| dsRNA |
420D |
8!A:25!B |
U:A |
WC [cWW][XX] |
10.19 |
57.7; 58.33 |
0.63 |
-6.67 |
0.1 |
11.25 |
| dsRNA |
420D |
9!A:24!B |
A:U |
WC [cWW][XX] |
10.12 |
59.82; 57.18 |
2.64 |
-4.98 |
0.06 |
6.28 |
| dsRNA |
420D |
10!A:23!B |
A:U |
WC [cWW][XX] |
10.26 |
55.74; 58.09 |
2.36 |
-6.6 |
0.38 |
14.61 |
| dsRNA |
420D |
11!A:22!B |
A:G |
H*_1 [cHW][-] |
10.42 |
56.2; 42.93 |
13.27 |
-10.47 |
0.16 |
16.81 |
| dsRNA |
420D |
12!A:21!B |
U:A |
WC [cWW][XX] |
10.51 |
56.26; 58.89 |
2.63 |
-8.02 |
0.07 |
16.96 |
| dsRNA |
420D |
13!A:20!B |
C:G |
WC [cWW][XIX] |
10.55 |
55.92; 51.27 |
4.65 |
-2.64 |
0.01 |
11.09 |
| dsRNA |
420D |
14!A:19!B |
U:A |
WC [cWW][XX] |
10.31 |
54.66; 56.95 |
2.29 |
-8.08 |
0.14 |
10.04 |
| dsRNA |
420D |
15!A:18!B |
G:C |
WC [cWW][XIX] |
10.44 |
52.8; 58.72 |
5.92 |
-15.34 |
0.38 |
18.8 |
| dsRNA |
420D |
16!A:17!B |
C:G |
WC [cWW][XIX] |
10.6 |
58.6; 49.64 |
8.95 |
-13.0 |
0.17 |
12.59 |