Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 429D
BPC Identified: 17
Ambiguities: 0
Leadzyme |
429D |
19!A:49!B |
G:C |
WC [cWW][XIX] |
10.63 |
52.93; 52.1 |
0.83 |
-12.58 |
0.22 |
14.87 |
Leadzyme |
429D |
20!A:48!B |
G:C |
WC [cWW][XIX] |
10.56 |
51.22; 53.98 |
2.76 |
-8.78 |
0.21 |
14.66 |
Leadzyme |
429D |
21!A:47!B |
A:U |
WC [cWW][XX] |
10.41 |
57.8; 57.22 |
0.58 |
-12.62 |
0.44 |
20.75 |
Leadzyme |
429D |
22!A:46!B |
C:G |
WC [cWW][XIX] |
10.44 |
59.35; 52.04 |
7.31 |
-17.26 |
0.43 |
28.14 |
Leadzyme |
429D |
23!A:45!B |
C:A |
sWb [---][-] |
10.72 |
89.46; 23.28 |
66.18 |
-8.44 |
0.5 |
28.33 |
Leadzyme |
429D |
27!A:43!B |
C:G |
WC [cWW][XIX] |
10.5 |
54.31; 56.06 |
1.75 |
-5.35 |
0.12 |
10.08 |
Leadzyme |
429D |
28!A:42!B |
C:G |
WC [cWW][XIX] |
10.42 |
57.97; 52.61 |
5.36 |
-11.27 |
0.01 |
14.95 |
Leadzyme |
429D |
29!A:41!B |
A:U |
WC [cWW][XX] |
10.32 |
58.38; 52.23 |
6.15 |
-6.8 |
0.05 |
9.01 |
Leadzyme |
429D |
30!A:40!B |
G:C |
WC [cWW][XIX] |
10.78 |
51.61; 52.92 |
1.31 |
-13.5 |
0.18 |
19.83 |
Leadzyme |
429D |
119!C:149!D |
G:C |
WC [cWW][XIX] |
10.55 |
53.25; 53.45 |
0.2 |
0.5 |
0.18 |
15.59 |
Leadzyme |
429D |
120!C:148!D |
G:C |
WC [cWW][XIX] |
10.6 |
52.69; 53.25 |
0.56 |
-7.98 |
0.08 |
8.98 |
Leadzyme |
429D |
121!C:147!D |
A:U |
WC [cWW][XX] |
10.38 |
59.91; 55.47 |
4.44 |
-8.91 |
0.05 |
11.03 |
Leadzyme |
429D |
122!C:146!D |
C:G |
WC [cWW][XIX] |
10.02 |
58.31; 48.6 |
9.7 |
-18.41 |
0.04 |
21.09 |
Leadzyme |
429D |
127!C:143!D |
C:G |
WC [cWW][XIX] |
10.54 |
54.64; 54.81 |
0.17 |
-1.6 |
0.04 |
9.17 |
Leadzyme |
429D |
128!C:142!D |
C:G |
WC [cWW][XIX] |
10.52 |
56.8; 52.59 |
4.21 |
-5.87 |
0.04 |
10.51 |
Leadzyme |
429D |
129!C:141!D |
A:U |
WC [cWW][XX] |
10.14 |
57.95; 56.29 |
1.66 |
-4.27 |
0.17 |
8.5 |
Leadzyme |
429D |
130!C:140!D |
G:C |
WC [cWW][XIX] |
10.33 |
52.56; 60.31 |
7.76 |
-6.3 |
0.45 |
14.12 |