Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 430D
BPC Identified: 16
Ambiguities: 0
| rRNA |
430D |
1!A:29!A |
G:C |
WC [cWW][XIX] |
10.57 |
53.91; 55.77 |
1.86 |
-0.28 |
0.14 |
4.2 |
| rRNA |
430D |
2!A:28!A |
G:C |
WC [cWW][XIX] |
10.35 |
53.95; 55.93 |
1.98 |
-8.34 |
0.23 |
15.55 |
| rRNA |
430D |
3!A:27!A |
G:C |
WC [cWW][XIX] |
10.68 |
56.25; 50.46 |
5.79 |
-3.21 |
0.15 |
2.68 |
| rRNA |
430D |
4!A:26!A |
U:A |
WC [cWW][XX] |
10.29 |
60.47; 56.09 |
4.38 |
-6.73 |
0.19 |
9.28 |
| rRNA |
430D |
5!A:25!A |
G:C |
WC [cWW][XIX] |
10.7 |
53.75; 54.98 |
1.23 |
-1.74 |
0.16 |
11.69 |
| rRNA |
430D |
6!A:24!A |
C:G |
WC [cWW][XIX] |
10.63 |
55.11; 53.49 |
1.62 |
4.46 |
0.33 |
11.52 |
| rRNA |
430D |
7!A:23!A |
U:C |
sWC [---][-] |
10.65 |
80.51; 11.92 |
68.58 |
6.65 |
0.13 |
18.78 |
| rRNA |
430D |
9!A:21!A |
A:A |
rS* [tHH][-] |
10.97 |
13.5; 15.32 |
1.82 |
-116.02 |
0.59 |
15.79 |
| rRNA |
430D |
10!A:20!A |
G:A |
S(bp:N1-O2P)_3 [---][-] |
10.4 |
80.84; 58.69 |
22.15 |
-177.51 |
1.17 |
15.9 |
| rRNA |
430D |
10!A:11!A |
G:U |
pS* [cHS][-] |
6.88 |
144.81; 47.49 |
97.31 |
8.9 |
0.04 |
6.79 |
| rRNA |
430D |
11!A:21!A |
U:A |
rH_1_Mo [tWH][XXIV] |
11.14 |
51.68; 14.84 |
36.84 |
-96.65 |
1.08 |
16.5 |
| rRNA |
430D |
11!A:20!A |
U:A |
rH_1 [tWH][XXIV] |
9.69 |
28.2; 19.04 |
9.17 |
172.97 |
0.34 |
22.12 |
| rRNA |
430D |
12!A:19!A |
A:G |
S [tSH][XI] |
9.5 |
17.25; 103.93 |
86.68 |
-2.52 |
0.2 |
14.13 |
| rRNA |
430D |
13!A:18!A |
C:G |
WC [cWW][XIX] |
10.69 |
55.98; 53.28 |
2.69 |
-8.61 |
0.26 |
7.76 |
| rRNA |
430D |
14!A:17!A |
G:A |
S [tSH][XI] |
9.5 |
95.73; 6.97 |
88.76 |
-71.92 |
0.15 |
19.67 |
| rRNA |
430D |
14!A:16!A |
G:G |
S(sb:O2*-N7)_1 [---][-] |
7.69 |
90.76; 31.75 |
59.01 |
-168.59 |
1.93 |
32.77 |