Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 437D BPC Identified: 15 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Pseudoknot 437D 3!A:18!A C:G WC [cWW][XIX] 10.86 54.24; 50.24 4.0 2.06 0.13 9.58
Pseudoknot 437D 4!A:20!A G:A rS [tSS][-] 8.23 87.56; 59.05 28.5 161.65 1.15 37.57
Pseudoknot 437D 4!A:17!A G:C WC [cWW][XIX] 10.49 55.99; 58.64 2.65 -14.8 0.13 20.3
Pseudoknot 437D 5!A:16!A C:G WC [cWW][XIX] 10.66 54.57; 53.74 0.83 -12.82 0.15 17.21
Pseudoknot 437D 6!A:15!A G:C WC [cWW][XIX] 10.77 53.61; 53.93 0.32 -14.63 0.04 16.43
Pseudoknot 437D 7!A:24!A G:A fS [tSW][X] 9.23 121.56; 13.05 108.51 101.36 0.27 17.37
Pseudoknot 437D 7!A:14!A G:C WC [cWW][XIX] 10.72 54.07; 53.95 0.12 -11.73 0.14 15.18
Pseudoknot 437D 8!A:12!A C:G rH_1 [tWH][-] 11.12 29.32; 3.29 26.03 -120.88 0.15 5.59
Pseudoknot 437D 10!A:28!A C:G WC [cWW][XIX] 10.79 52.2; 50.99 1.21 -16.03 0.44 25.1
Pseudoknot 437D 11!A:27!A C:G WC [cWW][XIX] 10.63 56.27; 50.39 5.88 -18.73 0.13 15.95
Pseudoknot 437D 12!A:26!A G:C WC [cWW][XIX] 10.51 55.83; 56.18 0.35 -21.51 0.5 29.25
Pseudoknot 437D 14!A:25!A C:A pfS [cSW][-] 9.21 125.97; 34.13 91.84 -26.02 0.46 35.0
Pseudoknot 437D 15!A:23!A C:A pfS [cSW][-] 9.49 127.94; 32.26 95.69 -18.83 0.27 15.82
Pseudoknot 437D 16!A:21!A G:A S(bp:N2-O2P)_2 [---][-] 8.65 124.2; 20.86 103.34 129.04 0.9 10.88
Pseudoknot 437D 17!A:20!A C:A rpS(bs:O2-O2*) [cSS][-] 5.59 109.64; 154.08 44.45 -25.33 1.22 18.86