Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 462D
BPC Identified: 22
Ambiguities: 0
vRNA |
462D |
1!A:23!B |
C:G |
WC [cWW][XIX] |
10.41 |
52.34; 56.8 |
4.46 |
-20.02 |
0.77 |
30.61 |
vRNA |
462D |
2!A:22!B |
U:A |
WC [cWW][XX] |
10.03 |
55.98; 60.03 |
4.05 |
-13.39 |
0.24 |
18.33 |
vRNA |
462D |
3!A:21!B |
U:A |
WC [cWW][XX] |
10.47 |
57.73; 57.31 |
0.42 |
-9.72 |
0.14 |
19.09 |
vRNA |
462D |
4!A:20!B |
G:C |
WC [cWW][XIX] |
10.73 |
54.9; 54.33 |
0.57 |
-10.17 |
0.01 |
17.52 |
vRNA |
462D |
5!A:19!B |
C:G |
WC [cWW][XIX] |
10.75 |
55.25; 50.4 |
4.84 |
-15.61 |
0.13 |
23.94 |
vRNA |
462D |
6!A:18!B |
U:A |
WC [cWW][XX] |
10.46 |
56.45; 52.09 |
4.36 |
-7.52 |
0.21 |
10.5 |
vRNA |
462D |
7!A:17!B |
G:C |
WC [cWW][XIX] |
10.64 |
53.96; 55.88 |
1.92 |
-8.24 |
0.03 |
19.55 |
vRNA |
462D |
9!A:16!B |
G:A |
WC [cWW][VIII] |
12.18 |
52.4; 55.76 |
3.36 |
-9.19 |
0.08 |
33.82 |
vRNA |
462D |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.65 |
55.04; 54.34 |
0.71 |
-6.61 |
0.42 |
14.45 |
vRNA |
462D |
11!A:14!B |
U:A |
WC [cWW][XX] |
10.59 |
52.17; 55.2 |
3.03 |
-11.78 |
0.14 |
20.53 |
vRNA |
462D |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.78 |
53.77; 54.38 |
0.6 |
-4.49 |
0.19 |
9.61 |
vRNA |
462D |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.85 |
53.68; 55.11 |
1.43 |
-6.04 |
0.02 |
9.19 |
vRNA |
462D |
14!A:11!B |
A:U |
WC [cWW][XX] |
10.48 |
56.16; 54.3 |
1.86 |
-8.66 |
0.1 |
11.5 |
vRNA |
462D |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.65 |
53.68; 52.79 |
0.89 |
-13.12 |
0.48 |
20.74 |
vRNA |
462D |
16!A:9!B |
A:G |
WC [cWW][VIII] |
12.87 |
46.67; 48.11 |
1.44 |
-9.34 |
0.05 |
22.3 |
vRNA |
462D |
17!A:7!B |
C:G |
WC [cWW][XIX] |
10.81 |
55.51; 51.94 |
3.57 |
-1.14 |
0.05 |
7.81 |
vRNA |
462D |
18!A:6!B |
A:U |
WC [cWW][XX] |
10.66 |
54.21; 56.2 |
1.99 |
-11.68 |
0.26 |
15.06 |
vRNA |
462D |
19!A:5!B |
G:C |
WC [cWW][XIX] |
10.54 |
53.3; 57.53 |
4.22 |
-13.89 |
0.24 |
20.5 |
vRNA |
462D |
20!A:4!B |
C:G |
WC [cWW][XIX] |
10.56 |
57.1; 52.4 |
4.7 |
-13.32 |
0.24 |
20.12 |
vRNA |
462D |
21!A:3!B |
A:U |
WC [cWW][XX] |
10.22 |
57.7; 60.94 |
3.24 |
-12.34 |
0.09 |
13.77 |
vRNA |
462D |
22!A:2!B |
A:U |
WC [cWW][XX] |
10.31 |
55.26; 56.77 |
1.51 |
-13.06 |
0.38 |
19.44 |
vRNA |
462D |
23!A:1!B |
G:C |
WC [cWW][XIX] |
10.74 |
51.28; 54.43 |
3.16 |
-9.73 |
0.0 |
17.78 |