Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 480D
BPC Identified: 13
Ambiguities: 0
| rRNA |
480D |
2648!A:2672!A |
G:U |
Wb [cWW][XXVIII] |
10.39 |
40.87; 68.57 |
27.7 |
-12.08 |
0.2 |
13.15 |
| rRNA |
480D |
2649!A:2671!A |
C:G |
WC [cWW][XIX] |
10.64 |
52.36; 54.55 |
2.19 |
-11.35 |
0.05 |
12.84 |
| rRNA |
480D |
2650!A:2670!A |
U:A |
WC [cWW][XX] |
10.63 |
54.26; 55.8 |
1.54 |
-10.85 |
0.3 |
15.34 |
| rRNA |
480D |
2651!A:2669!A |
C:G |
WC [cWW][XIX] |
10.6 |
57.08; 55.65 |
1.43 |
-11.7 |
0.27 |
15.8 |
| rRNA |
480D |
2652!A:2668!A |
C:G |
WC [cWW][XIX] |
10.77 |
54.19; 52.25 |
1.94 |
-8.44 |
0.02 |
12.73 |
| rRNA |
480D |
2653!A:2667!A |
U:C |
sWC [---][-] |
10.52 |
83.83; 15.7 |
68.13 |
-7.09 |
0.37 |
11.57 |
| rRNA |
480D |
2654!A:2666!A |
A:C |
rS* [tHH][-] |
12.63 |
13.04; 37.22 |
24.18 |
-67.85 |
1.3 |
26.68 |
| rRNA |
480D |
2655!A:2665!A |
G:A |
S(bp:N1-O2P)_3 [---][-] |
10.5 |
81.09; 62.06 |
19.03 |
-168.65 |
1.03 |
20.77 |
| rRNA |
480D |
2655!A:2656!A |
G:U |
pS* [cHS][-] |
6.64 |
142.84; 51.44 |
91.4 |
12.8 |
0.22 |
8.29 |
| rRNA |
480D |
2656!A:2665!A |
U:A |
rH_1 [tWH][XXIV] |
9.57 |
27.35; 23.75 |
3.61 |
-170.14 |
0.69 |
18.98 |
| rRNA |
480D |
2657!A:2664!A |
A:G |
S [tSH][XI] |
9.6 |
6.78; 99.5 |
92.72 |
8.92 |
0.08 |
4.88 |
| rRNA |
480D |
2658!A:2663!A |
C:G |
WC [cWW][XIX] |
10.53 |
55.79; 55.61 |
0.18 |
3.9 |
0.21 |
7.87 |
| rRNA |
480D |
2659!A:2662!A |
G:A |
S [tSH][XI] |
9.34 |
98.51; 13.74 |
84.77 |
-110.7 |
0.65 |
20.11 |