Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 483D
BPC Identified: 13
Ambiguities: 0
| rRNA |
483D |
2648!A:2672!A |
G:U |
Wb [cWW][XXVIII] |
10.66 |
46.61; 65.58 |
18.97 |
-8.38 |
0.1 |
11.3 |
| rRNA |
483D |
2649!A:2671!A |
C:G |
Wb [---][-] |
10.49 |
57.97; 44.78 |
13.19 |
-12.22 |
0.57 |
18.44 |
| rRNA |
483D |
2650!A:2670!A |
U:A |
WC [cWW][XX] |
10.5 |
59.11; 55.34 |
3.77 |
-8.57 |
0.04 |
11.17 |
| rRNA |
483D |
2651!A:2669!A |
C:G |
WC [cWW][XIX] |
10.49 |
58.82; 55.9 |
2.92 |
-12.46 |
0.28 |
17.4 |
| rRNA |
483D |
2652!A:2668!A |
C:G |
WC [cWW][XIX] |
10.74 |
55.48; 50.48 |
5.0 |
-8.15 |
0.01 |
12.65 |
| rRNA |
483D |
2653!A:2667!A |
U:C |
sWC [---][-] |
10.71 |
81.81; 17.15 |
64.66 |
-4.73 |
0.14 |
15.21 |
| rRNA |
483D |
2654!A:2666!A |
A:C |
rS* [tHH][-] |
12.56 |
12.2; 37.53 |
25.33 |
-69.81 |
1.31 |
26.06 |
| rRNA |
483D |
2655!A:2665!A |
G:A |
S(bp:N1-O2P)_3 [---][-] |
10.67 |
85.85; 62.06 |
23.79 |
-169.49 |
0.96 |
20.7 |
| rRNA |
483D |
2655!A:2656!A |
G:U |
pS* [cHS][-] |
6.66 |
146.72; 51.39 |
95.33 |
9.57 |
0.15 |
5.83 |
| rRNA |
483D |
2656!A:2665!A |
U:A |
rH_1 [tWH][XXIV] |
9.54 |
29.24; 24.18 |
5.06 |
-166.38 |
0.92 |
22.05 |
| rRNA |
483D |
2657!A:2664!A |
A:G |
S [tSH][XI] |
9.42 |
9.31; 100.27 |
90.96 |
5.68 |
0.11 |
3.98 |
| rRNA |
483D |
2658!A:2663!A |
C:G |
WC [cWW][XIX] |
10.56 |
57.03; 56.45 |
0.58 |
0.48 |
0.23 |
7.27 |
| rRNA |
483D |
2659!A:2662!A |
G:A |
S [tSH][XI] |
9.27 |
99.87; 12.98 |
86.89 |
-110.75 |
0.6 |
18.86 |