Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 486D BPC Identified: 99 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 486D 1!A:72!A U:A WC [cWW][XX] 10.61 55.19; 53.3 1.89 3.3 0.77 28.38
tRNA 486D 2!A:71!A C:G WC [cWW][XIX] 10.79 54.27; 52.62 1.66 -3.21 0.01 4.67
tRNA 486D 3!A:70!A C:G WC [cWW][XIX] 10.81 50.21; 57.77 7.57 8.35 0.02 10.56
tRNA 486D 4!A:69!A G:C WC [cWW][XIX] 10.48 48.41; 58.32 9.91 -10.63 0.12 11.33
tRNA 486D 5!A:68!A U:G Wb [cWW][XXVIII] 10.42 70.15; 46.44 23.71 6.63 0.46 4.39
tRNA 486D 6!A:67!A G:C WC [cWW][XIX] 10.5 47.52; 56.53 9.01 -13.43 0.0 16.04
tRNA 486D 7!A:66!A A:U WC [cWW][XX] 10.65 54.7; 55.46 0.76 -5.47 0.22 3.9
tRNA 486D 8!A:14!A U:A rH_1 [tWH][XXIV] 9.6 30.43; 20.01 10.42 -175.91 0.21 10.49
tRNA 486D 9!A:23!A A:A rS* [tHH][-] 11.09 11.74; 8.25 3.5 161.92 0.14 10.05
tRNA 486D 10!A:45!A G:G pS_2 [---][-] 9.44 42.5; 105.92 63.42 -21.33 0.48 22.64
tRNA 486D 10!A:25!A G:U Wb [cWW][XXVIII] 10.59 42.36; 66.2 23.84 0.5 0.09 3.3
tRNA 486D 11!A:24!A U:A WC [cWW][XX] 10.48 55.31; 56.6 1.29 -13.09 0.22 14.5
tRNA 486D 12!A:23!A U:A WC [cWW][XX] 10.63 55.85; 53.07 2.78 -1.96 0.11 3.36
tRNA 486D 13!A:22!A U:G Wb_PSU [---][-] 10.55 82.6; 45.14 37.46 -9.44 0.22 7.28
tRNA 486D 14!A:21!A A:A pfS [cSW][-] 9.39 37.74; 114.99 77.25 -14.62 0.62 15.66
tRNA 486D 15!A:48!A A:U rWC [tWW][XXI] 11.13 27.31; 45.02 17.71 -178.39 0.26 4.19
tRNA 486D 17!A:55!A G:U fS_PSU [---][-] 9.36 43.32; 117.27 73.95 -129.3 0.28 32.29
tRNA 486D 22!A:46!A G:A rH*_1 [tHW][-] 11.91 17.92; 22.07 4.14 -169.73 0.17 9.79
tRNA 486D 26!A:44!A G:A WC [cWW][VIII] 12.74 46.17; 43.95 2.23 -17.5 0.28 37.44
tRNA 486D 27!A:43!A C:G WC [cWW][XIX] 10.73 50.3; 52.47 2.18 -10.37 0.15 14.81
tRNA 486D 28!A:42!A C:G WC [cWW][XIX] 10.86 51.0; 53.22 2.21 -6.45 0.02 8.25
tRNA 486D 29!A:41!A A:U WC [cWW][XX] 11.27 47.47; 49.78 2.31 2.15 0.7 8.13
tRNA 486D 30!A:40!A G:C WC [cWW][XIX] 10.4 52.76; 55.4 2.63 -14.01 0.3 18.3
tRNA 486D 31!A:39!A A:U Wb*_PSU [---][-] 10.77 60.54; 66.33 5.78 -10.98 0.53 11.46
tRNA 486D 34!A:3!B G:U WC [---][-] 9.92 54.11; 60.01 5.91 -15.51 1.21 7.37
tRNA 486D 35!A:2!B A:U WC [cWW][XX] 10.4 61.67; 61.31 0.37 -15.33 1.02 13.58
tRNA 486D 36!A:1!B A:U WC [cWW][XX] 10.19 54.51; 52.4 2.11 -17.28 1.08 10.54
tRNA 486D 49!A:65!A C:G WC [cWW][XIX] 10.77 51.86; 55.65 3.79 -2.02 0.14 6.67
tRNA 486D 50!A:64!A G:C Wb [---][-] 10.26 48.34; 62.2 13.87 -3.3 0.39 11.35
tRNA 486D 51!A:63!A G:C WC [cWW][XIX] 10.49 46.66; 58.85 12.19 -0.8 0.18 9.95
tRNA 486D 52!A:62!A G:C WC [cWW][XIX] 10.62 60.56; 48.44 12.11 -3.73 0.06 11.27
tRNA 486D 53!A:61!A G:C WC [cWW][XIX] 10.8 53.64; 51.93 1.71 2.22 0.19 7.11
tRNA 486D 54!A:58!A U:A rH_1 [tWH][XXIV] 9.81 32.29; 16.52 15.78 -159.63 0.08 7.96
tRNA 486D 55!A:57!A U:A S_PSU(sb:O2*-N7) [---][-] 6.51 94.55; 42.61 51.94 -178.47 1.29 34.9
tRNA 486D 1!C:72!C G:C WC [cWW][XIX] 10.27 53.05; 63.75 10.71 -2.09 0.29 2.11
tRNA 486D 2!C:71!C C:G WC [cWW][XIX] 10.27 58.52; 49.87 8.65 -4.84 0.33 11.13
tRNA 486D 3!C:70!C G:C WC [cWW][XIX] 10.59 54.49; 55.95 1.46 -6.95 0.39 11.55
tRNA 486D 4!C:69!C G:U Wb [cWW][XXVIII] 10.58 46.19; 68.43 22.24 -8.11 0.05 10.22
tRNA 486D 5!C:68!C A:U WC [cWW][XX] 10.73 52.68; 54.02 1.34 -15.02 0.44 22.12
tRNA 486D 6!C:67!C U:A WC [cWW][XX] 10.28 57.92; 58.55 0.63 -17.27 0.08 23.23
tRNA 486D 7!C:66!C U:A WC [cWW][XX] 11.06 48.88; 54.17 5.29 0.01 0.09 13.27
tRNA 486D 8!C:14!C U:A rH_1 [tWH][XXIV] 9.5 28.13; 21.64 6.49 169.88 0.34 11.68
tRNA 486D 9!C:23!C A:A rS* [tHH][-] 11.21 11.88; 8.77 3.1 166.9 0.43 9.3
tRNA 486D 10!C:45!C G:G pS_1 [cSH][-] 8.79 39.83; 120.65 80.81 -8.99 0.4 26.59
tRNA 486D 10!C:25!C G:C WC [cWW][XIX] 11.05 51.33; 49.39 1.95 0.16 0.18 12.23
tRNA 486D 11!C:24!C C:G WC [cWW][XIX] 11.06 48.82; 49.02 0.2 -10.07 0.24 23.98
tRNA 486D 12!C:23!C U:A WC [cWW][XX] 10.78 53.73; 53.47 0.26 -10.99 0.56 17.06
tRNA 486D 13!C:22!C C:G WC [cWW][XIX] 11.1 51.63; 55.42 3.79 -5.11 0.19 11.29
tRNA 486D 15!C:48!C G:C rWb [tWW][XXII] 11.0 34.59; 60.7 26.11 173.72 0.33 8.89
tRNA 486D 16!C:60!C U:C pfS*_1 [cWS][-] 6.65 39.29; 90.62 51.33 -141.68 0.02 58.34
tRNA 486D 18!C:55!C G:U fS_PSU [---][-] 8.8 34.53; 132.11 97.59 -134.2 0.59 10.52
tRNA 486D 19!C:56!C G:C WC [cWW][XIX] 10.22 62.07; 53.16 8.91 -26.46 1.14 33.14
tRNA 486D 22!C:46!C G:G rH_1 [tWH][VII] 10.88 32.88; 30.73 2.15 -171.64 0.32 10.49
tRNA 486D 27!C:43!C C:G WC [cWW][XIX] 11.58 41.23; 46.24 5.01 -12.56 0.1 29.68
tRNA 486D 28!C:42!C C:G WC [cWW][XIX] 10.45 54.33; 57.31 2.98 -9.19 0.52 13.76
tRNA 486D 29!C:41!C C:G WC [cWW][XIX] 10.35 60.02; 56.8 3.22 -10.97 0.2 9.76
tRNA 486D 30!C:40!C G:U Wb [cWW][XXVIII] 10.63 45.49; 64.63 19.14 -10.61 0.01 14.55
tRNA 486D 31!C:39!C C:G WC [cWW][XIX] 10.7 56.94; 50.84 6.1 -8.91 0.04 17.19
tRNA 486D 34!C:3!D G:C WC [cWW][XIX] 10.68 55.17; 54.28 0.89 -1.99 0.25 1.11
tRNA 486D 35!C:2!D U:U Wb [cWW][XVI] 9.27 37.96; 76.98 39.03 -1.23 0.13 3.79
tRNA 486D 36!C:1!D C:G WC [cWW][XIX] 10.64 55.37; 55.6 0.23 -0.46 0.27 0.9
tRNA 486D 49!C:65!C C:G WC [cWW][XIX] 10.82 52.64; 55.86 3.22 -5.7 0.26 15.25
tRNA 486D 50!C:64!C U:A WC [cWW][XX] 10.49 56.07; 60.93 4.86 -10.27 0.38 6.89
tRNA 486D 51!C:63!C G:C WC [cWW][XIX] 10.71 55.21; 51.86 3.35 -9.41 0.26 12.94
tRNA 486D 52!C:62!C U:A WC [cWW][XX] 10.79 50.64; 55.92 5.28 -9.14 0.04 14.15
tRNA 486D 53!C:61!C G:C WC [cWW][XIX] 10.61 56.41; 54.75 1.66 -12.71 0.92 26.51
tRNA 486D 54!C:58!C U:A rH_1 [tWH][XXIV] 9.54 31.61; 22.31 9.3 -178.79 0.18 5.94
tRNA 486D 55!C:57!C U:G S_PSU(sb:O2*-N7) [---][-] 6.53 95.03; 40.24 54.79 -179.03 1.9 23.26
tRNA 486D 1!E:72!E U:A WC [cWW][XX] 10.61 55.21; 53.3 1.91 3.22 0.77 28.37
tRNA 486D 2!E:71!E C:G WC [cWW][XIX] 10.79 54.28; 52.62 1.66 -3.1 0.01 4.69
tRNA 486D 3!E:70!E C:G WC [cWW][XIX] 10.81 50.18; 57.73 7.55 8.38 0.02 10.54
tRNA 486D 4!E:69!E G:C WC [cWW][XIX] 10.48 48.42; 58.36 9.94 -10.69 0.12 11.29
tRNA 486D 5!E:68!E U:G Wb [cWW][XXVIII] 10.42 70.14; 46.44 23.7 6.64 0.46 4.36
tRNA 486D 6!E:67!E G:C WC [cWW][XIX] 10.5 47.52; 56.58 9.07 -13.41 0.0 16.05
tRNA 486D 7!E:66!E A:U WC [cWW][XX] 10.65 54.66; 55.47 0.8 -5.44 0.22 3.88
tRNA 486D 8!E:14!E U:A rH_1 [tWH][XXIV] 9.6 30.43; 20.01 10.42 -175.98 0.21 10.5
tRNA 486D 9!E:23!E A:A rS* [tHH][-] 11.09 11.73; 8.27 3.46 162.3 0.15 10.02
tRNA 486D 10!E:45!E G:G pS_2 [---][-] 9.44 42.47; 105.93 63.47 -21.43 0.48 22.61
tRNA 486D 10!E:25!E G:U Wb [cWW][XXVIII] 10.59 42.4; 66.14 23.74 0.58 0.09 3.28
tRNA 486D 11!E:24!E U:A WC [cWW][XX] 10.48 55.31; 56.59 1.28 -13.05 0.23 14.52
tRNA 486D 12!E:23!E U:A WC [cWW][XX] 10.63 55.87; 53.03 2.85 -1.98 0.11 3.34
tRNA 486D 13!E:22!E U:G Wb_PSU [---][-] 10.55 82.61; 45.13 37.48 -9.42 0.21 7.32
tRNA 486D 14!E:21!E A:A pfS [cSW][-] 9.39 37.75; 114.94 77.2 -14.62 0.62 15.68
tRNA 486D 15!E:48!E A:U rWC [tWW][XXI] 11.13 27.33; 45.02 17.69 -178.38 0.27 4.16
tRNA 486D 17!E:55!E G:U fS_PSU [---][-] 9.36 43.3; 117.28 73.98 -129.34 0.28 32.26
tRNA 486D 22!E:46!E G:A rH*_1 [tHW][-] 11.91 17.93; 22.08 4.15 -169.8 0.17 9.79
tRNA 486D 26!E:44!E G:A WC [cWW][VIII] 12.63 45.61; 45.75 0.14 -11.13 0.12 27.16
tRNA 486D 27!E:43!E G:C WC [cWW][XIX] 10.8 53.15; 52.78 0.37 -12.09 0.07 14.01
tRNA 486D 28!E:42!E G:C WC [cWW][XIX] 10.72 51.11; 54.27 3.15 -9.82 0.27 15.1
tRNA 486D 29!E:41!E C:G WC [cWW][XIX] 10.58 58.14; 52.64 5.5 -10.75 0.23 9.61
tRNA 486D 30!E:40!E G:U Wb [cWW][XXVIII] 10.56 43.01; 68.13 25.12 -10.23 0.08 16.31
tRNA 486D 31!E:39!E C:G WC [cWW][XIX] 10.73 54.99; 52.55 2.44 -10.29 0.39 9.35
tRNA 486D 49!E:65!E C:G WC [cWW][XIX] 10.77 51.87; 55.65 3.77 -2.0 0.14 6.65
tRNA 486D 50!E:64!E G:C Wb [---][-] 10.26 48.3; 62.18 13.87 -3.28 0.38 11.36
tRNA 486D 51!E:63!E G:C WC [cWW][XIX] 10.49 46.65; 58.86 12.21 -0.8 0.18 9.92
tRNA 486D 52!E:62!E G:C WC [cWW][XIX] 10.62 60.57; 48.46 12.11 -3.71 0.05 11.29
tRNA 486D 53!E:61!E G:C WC [cWW][XIX] 10.8 53.64; 51.93 1.72 2.22 0.19 7.13
tRNA 486D 54!E:58!E U:A rH_1 [tWH][XXIV] 9.82 32.27; 16.49 15.79 -159.58 0.08 7.93
tRNA 486D 55!E:57!E U:A S_PSU(sb:O2*-N7) [---][-] 6.51 94.55; 42.64 51.91 -178.49 1.29 34.88