Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 5MSF BPC Identified: 11 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
RNA_aptamer 5MSF 1!R:17!R C:G WC [cWW][XIX] 11.12 47.36; 48.95 1.59 -3.85 0.41 15.54
RNA_aptamer 5MSF 2!R:16!R C:G WC [cWW][XIX] 10.7 53.16; 54.75 1.59 -13.66 0.04 17.23
RNA_aptamer 5MSF 3!R:15!R G:C WC [cWW][XIX] 10.77 52.62; 54.12 1.5 -12.2 0.47 19.15
RNA_aptamer 5MSF 4!R:14!R G:A WC [cWW][VIII] 12.47 49.9; 50.79 0.89 -3.25 0.32 12.61
RNA_aptamer 5MSF 6!R:13!R G:C WC [cWW][XIX] 10.78 52.65; 54.18 1.53 -5.86 0.31 4.9
RNA_aptamer 5MSF 7!R:12!R G:C WC [cWW][XIX] 10.59 55.83; 56.68 0.85 0.78 0.3 9.3
RNA_aptamer 5MSF 2!S:16!S C:G WC [cWW][XIX] 10.79 53.64; 53.26 0.38 -7.21 0.38 15.49
RNA_aptamer 5MSF 3!S:15!S G:C WC [cWW][XIX] 10.66 52.44; 55.42 2.97 -8.34 0.42 14.6
RNA_aptamer 5MSF 4!S:14!S G:A WC [cWW][VIII] 12.66 50.89; 49.83 1.05 -1.05 0.15 8.55
RNA_aptamer 5MSF 6!S:13!S G:C WC [cWW][XIX] 10.74 55.21; 55.05 0.16 -6.52 0.01 8.38
RNA_aptamer 5MSF 7!S:12!S G:C WC [cWW][XIX] 10.5 57.46; 57.94 0.48 2.68 0.58 3.52