LOCUS E.coli 1924 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 382 others ORIGIN 1 |--------- ---------- ---AAAUUGA AGAGUU(UGA )UCAU|-GGC UCAGAUUGAA 61 CGCUGGCGGC A-GGC-CUAA CACAUGCAA- --GUCGAACG -GUAACAG-- --GAAGAAG( 121 -CU----UG) CUUCUUU--- -GCUG|ACGA GUGGCGGACG GGUGAGUAAU GUCUGGGA-A 181 ACUGCCUGAU GGAGGGGGAU AACUA--CU- G(-GAAA)CG GUAGCUAAUA CCGCAUAAC- 241 ---------- GUC-(-GCAA ---)-GAC-- ---------- CAA-A-GAGG GGGACC---- 301 (--UUCG--- )----GG|CC UCUU-GCCA- --UCGGAUGU |GCCCAGAU| GGGAUUA-G- 361 CUAGUAGGUG GG(GUAACGG )CUCACCUA| GGCGA-CGAU CCCUAGCUG| GUCU(GAGA) 421 GGAU------ ---------- ----GACCAG C|CACACUGG AA(CUGAGA- CACG)GUCCA 481 GACUCC(UAC G)GGAGGCAG CAGUGGGG-A AUAUUGCACA AUGGGC(GCA A)GCCUGAUG 541 CA|GCCAUGC CGCGUG-UAU GAAGAAGGCC (UUCG)GGUU GUAAA----- ---------- 601 -----GUAC| UUUCAGCGGG GAGGAAGGGA GUAAAG(UUA AUAC--)CUU UGCUCAUUGA 661 CGUUACCCGC AG-AAGAAGC ACC-GGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUAA)U 721 ACGGAG|-GG UGCAAGCGUU AAUCGGAAUU ACUGGGC|GU AAAGCGCACG CAGGCG|GUU 781 UGUUAAG|-- UCAGAUGUG- AAAUCCCCGG GC(UC-A)AC CUGGG-AAC- -UGCAUCUGA 841 UACUGGCA-A GCUU-GAGUC UCGUAGAGGG GGGU|AGAAU UCCAGGUGUA GCG(GUGAAA 901 )UGCGUAGAG AUCUGGAGGA AUACCGGUGG C(GAAG)GCG G-CCCCCUGG ACGAAGACUG 961 ACGCUCAGGU GCGAAAGCGU GGGGAGCAAA CAGG(AUUAG AUAC)CCUGG UAGUCCACGC 1021 CGUAAACGAU GUCGACUU|G GAGGUUGUGC C---(c-uu- ga)----GGC GUGGC-UUCC 1081 GGAGC(UAAC )GCGUUAAGU CGAC|C|GCC UGGGGAGUAC GGCC(GCAA) GGUUAAAACU 1141 CAAA-UGAAU UGACGGGGGC CCGC-ACAAG CGGUGGAGCA -UGUGGUUUA AUUCG(AUGC 1201 AACG)CGAAG AA--CCUUAC CUGGUCUUGA CAUC|CACGG AAGUUUUCA( GAGA)UGAGA 1261 AUGUGCC(UU CG)GGAA|CC GUGAGA|--- ---------- ---------- ---------- 1321 ---------- ---------C |AGGUGCUGC AUG|GCUGUC GUCA|GCUCG U|GUU(GUGA 1381 )AAUGUUGGG (UUAAGU)CC CGCAACGAGC GCAACCCUUA |UCCUUUG-U UGC-CAGCGG 1441 ---------- (uccgg)--- ------CCG| GGAACU-CAA AGGAGACUGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGUGGGGA UGACGUCAAG UCAUCAUGGC CCUUACGACC AGGGCUACAC 1561 ACGUGCUACA AUGGCGCAUA CAAAGAGA-A -GCGACCUC( GCGA)GAGCA AGCGGACCUC 1621 AUAAAGUGCG UCGUAGUCCG GAUUGGAGUC (UGCAACUC) GACUCCAUGA AGUCGGAAUC 1681 GCUAGUAAUC GUGGA(UCAG AAU)GCCACG GUGAAUACGU UCCCGGGCCU UGUACACACC 1741 GCCCGUCACA CCAUGGGAGU GGGUUGC-AA AAGAAG-UAG GUAGCUUAAC C----(--uu 1801 cg-)----GG AGG-GCG-CU UACCACUUU- GUGAUU-CAU GACUGGGGUG AAGUCGUAAC 1861 AAGGUAACCG UAGG(GGAA) CCUGCGGUUG GAUCACCUCC UUA-|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1-ARCHAEA 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1 ARCHAEA. ACCESSION No information KEYWORDS No information. SOURCE 1 ARCHAEA. ORGANISM 1 ARCHAEA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1-EURYAR 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1 EURYARCHAEOTA. ACCESSION No information KEYWORDS No information. SOURCE 1.1 EURYARCHAEOTA. ORGANISM 1.1 EURYARCHAEOTA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.1-METH 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.1 METHANOCOCCALES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.1 METHANOCOCCALES. ORGANISM 1.1.1 METHANOCOCCALES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.1.1-MC 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.1.1 MC.JANNASCHII_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.1.1 MC.JANNASCHII_GROUP. ORGANISM 1.1.1.1 MC.JANNASCHII_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mc.janrrnA 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus jannaschii. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus jannaschii. ORGANISM Methanococcus jannaschii. REFERENCE 1 AUTHORS ,M.D., Reich,C.I., Overbeek,R., Kirkness,E.F., Weinstock,K.G ., Merrick,J.M., Glodek,A., Scott,J.D., Geoghagen,N.S., Weidman,J.F., Fuhrmann,J.L., Nguyen,D.T., Utterback,T., Kelley,J.M., Peterson,J.D., Sadow,P.W., Hanna,M.C., Cotton,M .D., Hurst,M.A., Roberts,K.M., Kaine,B.B., Borodovsky,M., Klenk,H.P., Fraser,C.M., Smith,H.O., Woese,C.R. and Venter,J .C. Bult,C.J., White,O., Olsen,G.J., Zhou,L., Fleischmann,R.D., Sutton,G.G., Blake,J.A., FitzGerald,L.M., Clayton,R.A., Gocayne,J.D., Kerlavage,A.R., Dougherty,B.A., Tomb,J., Adams TITLE Methanococcus jannaschii Complete genome sequence of the methanogenic archaeon, JOURNAL Science 273 (5278), 1058-1073 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L77117 (bases 157985 to 159459) complement operon= rrnA gene BASE COUNT 295 a 422 c 527 g 231 t 449 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AC 61 UGCUAUCGGG GUCCGACUAA GCCAUGCGA- --GUCAAGGG ---------- ---GCUCCC( 121 -UU----CG) GGGAGC---- -----|---A CCGGCGCACG GCUCAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGUGGGGGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUC CCCCAUA--G 241 GGGA--GGAG GUC-(UGGAA U--)-GAUC- CCUC-CCC-- GAA-A-GGC- ---------- 301 (--GUAA--- )------|-- -GCU-GCCC- --GAGGAUGG |GGCUGCGG| CGGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCUA-CGAU CCGUACGGG| CCCU(GAGA) 421 GGGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCC-(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGC(GAA A)GCGCGACG 541 GG|GGGACCC CGAGUG-CC- ---------- (----)---- -------CAC GC--CCU--G 601 CG--UGGGC| UUUUCCGGAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GUCCG-GUG( CCA--GCAGC CGCGGUAA)U 721 ACCGG-|CGG CCCAAGUGGU GGCCACUGUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 CGGUAAG|-- UCUCUGCUU- AAAUC-UGCG GC(UC-A)AC CGCAG-GGC- -UGGCAGAGA 841 UACUGCCG-G GCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CCCAGGGGUA GCG(GUGAAA 901 )UGCGUUGAU CCCUGGGGGA CCACCUGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACUCU GCGGACUA|G GUGUCGCGUC GGC-(U-UC- GG)--GCCGA CGCGG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG CA--UCUUAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GUUGACGA-C 1321 CUUGCC-AGA -CGCGCCGAG |AGGUGGUGC AUG|GCCGUC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCCAUG-U UGC-UACCUC 1441 CUCC------ (UCCG-)--- -GGAG-GAG| GGCACU-CAU GGGGGACCGC CGGC(GC-UA 1501 A)GCCGGAGG AAGGUGCGGG CAACGACAGG UCCGCAUGCC CCGAAUCCCC UGGGCUACAC 1561 GCGGGCUACA AUGGCCGGGA CAAUGGGA-C -GCGACCCC( GAAA)GGGGG AGCGAAUCCC 1621 CUAAACCCGG UCGUAGUCCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCCGGAAUC 1681 CGUAGUAAUC GCGCC(UCAC CAU)GGCGCG GUGAAUGCGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCGAGU UGAGCCC-AA GUGA-G-GCC CU-GUCC--- -----(--GC 1801 AA-)------ -GG-GCA-GG GUCGAACUU- GGGUUC-AGC GAGGGGGGCG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) C-UGCGGCUG GAUCACCUCC ....|..... ........~~ 1921 ~~~| // LOCUS Mc.jannasc 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus jannaschii str. JAL-1 DSM 2661. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus jannaschii str. JAL-1 DSM 2661. ORGANISM Methanococcus jannaschii. REFERENCE 1 AUTHORS Woese,C.R., Achenbach,L., Rouviere,P. and Mandelco,L. TITLE position of Archaeoglobus fulgidus in light of certain composition-induced artifacts Archaeal phylogeny: reexamination of the phylogenetic JOURNAL Syst. Appl. Microbiol. 14, 364-371 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 2661 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59126 isolate_name= JAL-1 BASE COUNT 289 a 411 c 496 g 223 t 505 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GNN GGAGGCC-AC 61 UGCUAUCGGG GUCCGACUAA GCCAUGCGA- --GUCAAGGG ---------- ---GCUCCC( 121 -UU----CG) GGGAGC---- -----|---A CCGGCGCACG GCUCAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGUGGGGGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUC CCCCAUA--G 241 GGGA--GGAG GUC-(UGGAA U--)-GAUC- CCUC-CCC-- GAA-A-GGC- ---------- 301 (--GUAA--- )------|-- -GCU-GCCC- --GANNAUGG |GGCUGCGG| CGGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCUA-CGAU CCGUACGGG| CCCU(GAGA) 421 GGGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGC(GAA A)GCGCGACG 541 GG|GGGACCC CGAGUG-CC- ---------- (----)---- -------CAC GC--CCU--G 601 CG--UGGGC| UUUUCCGGAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GUCCG-GUG( CCA--GCAGC CGCGGUAA)U 721 ACCGG-|CGG CCCAAGUGGU GGCCACUGUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 CNGUAAG|-- UCUCUGCUU- AAAUCCUGCG GC(UC-A)AC CGCAG-GGC- -U-GCAGAGA 841 UACUGCCN-N NNUU-GGNAC CGGGAGAGGC CNGG|GGUAC CCCAGGGGUA GCG(GUGAAA 901 )UGCGUUGAU CCCUGGGGGA CCACCUGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACUCU GCGGACUA|G GUGUCGCGUC GGC-(U-UC- GG)--GCNGA CGCGG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGNNAC -CGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG CA--UCUUAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GUUGACGA-C 1321 CUUGCC-AGA -CGCGCCGAG |AGGUGGUGC AUG|GCCGUC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCCAUG-U UGC-UACCUC 1441 CUCC--G--- (NCCG-)--- -GGAG-GAG| NGCACU-CAU GGGGNACCGN CGGC(GC-UA 1501 A)GCCGGAGG AAGGUGCGGG CAACGACAGG UCCGCAUGCC CCGAAUCCCC UGGGCUACAC 1561 GCGGGCUACA AUGGCCGGGA CAAUGGGA-C -GCGACCCC( GAAA)GGGGG AGCGAAUCCC 1621 CUAAACCGGG UCGUAGUCCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCCGGAAUC 1681 CGUAGUAAUC GCGCC(UCAC CAU)GGCGCG GUGAAUGCGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCGAGU UGAGCCC-AA GUGA-G-GCC CU-GUCC--- -----(--GC 1801 AA-)------ -GG-GCA-GG GUCGAACUU- G......... .......... .....GUAAC 1861 AAG....... ....(.GAA) CCUG...... GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mc.janrrnB 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus jannaschii. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus jannaschii. ORGANISM Methanococcus jannaschii. REFERENCE 1 AUTHORS ,M.D., Reich,C.I., Overbeek,R., Kirkness,E.F., Weinstock,K.G ., Merrick,J.M., Glodek,A., Scott,J.D., Geoghagen,N.S., Weidman,J.F., Fuhrmann,J.L., Nguyen,D.T., Utterback,T., Kelley,J.M., Peterson,J.D., Sadow,P.W., Hanna,M.C., Cotton,M .D., Hurst,M.A., Roberts,K.M., Kaine,B.B., Borodovsky,M., Klenk,H.P., Fraser,C.M., Smith,H.O., Woese,C.R. and Venter,J .C. Bult,C.J., White,O., Olsen,G.J., Zhou,L., Fleischmann,R.D., Sutton,G.G., Blake,J.A., FitzGerald,L.M., Clayton,R.A., Gocayne,J.D., Kerlavage,A.R., Dougherty,B.A., Tomb,J., Adams TITLE Methanococcus jannaschii Complete genome sequence of the methanogenic archaeon, JOURNAL Science 273 (5278), 1058-1073 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L77117 (bases 638452 to 639929) operon= rrnB gene BASE COUNT 295 a 426 c 527 g 230 t 446 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AC 61 UGCUAUCGGG GUCCGACUAA GCCAUGCGA- --GUCAAGGG ---------- ---GCUCCC( 121 -UU----CG) GGGAGC---- -----|---A CCGGCGCACG GCUCAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGUGGGGGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUC CCCCAUA--G 241 GGGA--GGAG GUC-(UGGAA U--)-GAUC- CCUC-CCC-- GAA-A-GGC- ---------- 301 (--GUAA--- )------|-- -GCC-GCCC- --GAGGAUGG |GGCUGCGG| CGGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCUA-CGAU CCGUACGGG| CCCU(GAGA) 421 GGGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGC(GAA A)GCGCGACG 541 GG|GGGACCC CGAGUG-CC- ---------- (----)---- -------CAC GC--CCU--G 601 CG--UGGGC| UUUUCCGGAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GUCCG-GUG( CCA--GCAGC CGCGGUAA)U 721 ACCGG-|CGG CCCAAGUGGU GGCCACUGUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 CGGUAAG|-- UCUCUGCUU- AAAUCCUGCG GC(UC-A)AC CGCAG-GGC- -UGGCAGAGA 841 UACUGCCG-G GCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CCCAGGGGUA GCG(GUGAAA 901 )UGCGUUGAU CCCUGGGGGA CCACCUGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACUCU GCGGACUA|G GUGUCGCGUC GGC-(U-UC- GG)--GCCGA CGCGG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG CA--UCUUAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GUUGACGA-C 1321 CUUGCC-AGA -CGCGCCGAG |AGGUGGUGC AUG|GCCGUC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCCAUG-U UGC-UACCUC 1441 CUCC------ (UCCG-)--- -GGAG-GAG| GGCACU-CAU GGGGGACCGC CGGC(GC-UA 1501 A)GCCGGAGG AAGGUGCGGG CAACGACAGG UCCGCAUGCC CCGAAUCCCC UGGGCUACAC 1561 GCGGGCUACA AUGGCCGGGA CAAUGGGA-C -GCGACCCC( GAAA)GGGGG AGCGAAUCCC 1621 CUAAACCCGG UCGUAGUCCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCCGGAAUC 1681 CGUAGUAAUC GCGCC(UCAC CAU)GGCGCG GUGAAUGCGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCGAGU UGAGCCC-AA GUGA-G-GCC CU-GUCC--- -----(--GC 1801 AA-)------ -GG-GCA-GG GUCGAACUU- GGGUUC-AGC GAGGGGGGCG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC ....|..... ........~~ 1921 ~~~| // LOCUS Mc.igneus 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus igneus str. Kol 5 DSM 5666. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus igneus str. Kol 5 DSM 5666. ORGANISM Methanococcus igneus. REFERENCE 1 AUTHORS Burggraf,S., Fricke,H., Neuner,A., Kristjansson,J., Rouviere ,P., Mandelco,L., Woese,C.R. and Stetter,K.O. TITLE Methanococcus igneus sp. nov., a novel hyperthermophilic methanogen from a shallow submarine hydrothermal system JOURNAL Syst. Appl. Microbiol. 13, 263-269 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 5666 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59125 isolate_name= Kol 5 BASE COUNT 277 a 370 c 459 g 221 t 597 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCCGGU(UGA )UCCC|-GCC GGAGGCC-AC 61 UGCUAUUGGG GUCCGACUAA GCCAUGCGA- --GUCG-AUG ---------- ------GGC( 121 -CU----C-) GUNC------ -----|---N AUGGCGGACG GCUCAGUAAC ACGUGGCUAA 181 CNUACCNUCG GGUGGGGGAU AACCU--CG- G(-GAAA)CU GAGGAUAAUC CNCCAUA--G 241 GGGA--AGAG GUC-(UGGAA U--)-UAUC- CUUC-CCC-- NAA-A-GC-- ---------- 301 (--AUAU--- )------|-- --NC-GCCC- --GANNAUGG |GGCUGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACNAA| GCCUN-CGAU CGGUACGGG| CCCU(GAGA) 421 GGGG------ ---------- ----GAGCCN G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGC(GAA A)GCGCGACG 541 GG|GGNACCC CAAGUG-CC- ---------- (----)---- -------CAC GC--ACU--G 601 CG--UGGNC| UUUUCCGGAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GUCCG-GUG( CCA--GCAGC CGCGGUAA)U 721 ACCGG-|CAG CNCGAGUGGU GGCNACUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 CAGUAAG|-- UCCCUGCUU- AAAUCCUACG GC(UU-A)AC CGUAG-NAC- -UNGCAGGNA 841 UACUGCUG-G NNUU-GGGAC CGGGAGAGGG NNGG|GGUAC UCCGGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCCCNNNGGA CCACCUAUNG C(GAAG)GCA C-CCGCCUGG AACGGGUCCG 961 ACGGUGAGGG ACNAAAGCCG GGGGAGCGAA CCGN(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 CGUAAACGCU GCGGACUA|G GUGUCGGGUA GGC-(C-UC- GU)--GCCUA CCCGG-UGCC 1081 NAAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGNNNNGGA GCACUACAAN GGGNGGANC. .......... .....(.... 1201 AACG)CUGGN CA--UCUUAC NAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--ANGA UGAAGGCCAG GUUGACGA-C 1321 CUUGCC-AGA -CGAGCCGAG |AGGUGGUGC AUG|GCCGUC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGCG |CCNNAUG-U UGC-CAUCCU 1441 CNNN------ (UCCG-)--- -GGGG-GNG| NGCACU-CAU GGGNNACCGN UGGC(GC-UA 1501 A)GCUAGAGG AAGGAGCGGG NAACGACAGG UCNGCAUGCC CCGANUCCCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUGGGA CAAUGGGA-N -GCGACCCC( GAAA)GGGGN AGCGAAUCCC 1621 CUAAACCCAG CUGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GNGCC(UCAU CAU)GGCGCG GUGAAUGCGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCGAGU UGGGUCU-AG GUGA-G-GCC CU-GGCC--- -----(--UC 1801 U--)------ -GG-CUG-GG GYCGAACCN- AGGCC..... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.thlitho 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus thermolithotrophicus str. SN-1 DSM 2095. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus thermolithotrophicus str. SN-1 DSM 2095. ORGANISM Methanococcus thermolithotrophicus. REFERENCE 1 AUTHORS Woese,C.R., Achenbach,L., Rouviere,P. and Mandelco,L. TITLE Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts JOURNAL Syst. Appl. Microbiol. 14, 364-371 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 2095 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59128 isolate_name= SN-1 BASE COUNT 321 a 367 c 468 g 271 t 497 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCC|-GCC GGAGGUC-AC 61 UGCUAUUGGG GUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- ------GAC( 121 -UU----CG) GUC------- -----|---C AUGGCGGACG GCUCAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGUGGGGGAU AACCU--CG- G(-GAAA)CU GAGGAUAAUA CCCCAUA--G 241 GAGA--AGAG GUC-(UGGAA U--)-GAUC- CUUC-UCU-- GAA-A-AC-- ---------- 301 (--AUAU--- )------|-- --GU-GCCC- --GAGNAUGG |GGCUGCGU| CUGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCUA-CGAU CAGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----CAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGGACCC CAAGUG-CU- ---------- (----)---- -------UAC GC--ACU--G 601 CG--UAGGC| UUUUCUAAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUA GG-AAUAAGG GCUGGGCA-A GUCCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GACCACUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CAGUAAG|-- UCCCUGUUU- AAAUCCUACG GC(UU-A)AC CGUAG-GNC- -UGGCAGGGA 841 UACUGCUN-G ACUU-GGGAC CGGGAGAGGG CGAG|GGUAC UUCAGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCCUGGAGGA CCACCUAUGG C(GAAG)GCA C-UCGCCUGG AACGGGUCCG 961 ACGGUGAGGG ACNAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 NGUAAACUCU GCGGACUA|G GUGUUAGGUA GGC-(C-CC- GU)--GCCUA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGACGGCCAG GUUGACGA-C 1321 CUUGCC-UGA -AGCGCUGAG |AGGUGGUGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-CACUUC 1441 UUCC------ (UCCG-)--- -GGAA-GAA| AGCACU-CAU AGGGAANCGC UGGC(GC-UA 1501 A)GCCAGAGG AAGGAGCGGG CAACGAUAGG UCCGCAUGCC CCGAAUCCCC UGGGCUACAC 1561 GCGGGCUACA AUGGUUGGGA CAAUGGGA-U -GCGACCCC( GAAA)GGGGA AGCUAAUCUC 1621 CUAAACCCAG CCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACA CCACCCGAGU UGGGUUG-AG GUGA-G-GCU UU-GGCC--- -----(--UU 1801 U--)------ -GG-CUA-AG GUCGAACCU- GGGCUC-AGC GAGGGGGG.. .....GUAAC 1861 AAG....... ....(.GAA) CCUG...... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.aeolic2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus "aeolicus".. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus "aeolicus". ORGANISM Methanococcus "aeolicus". REFERENCE 1 AUTHORS Keswani,J, Orkand,S, Premachandran,U, Mandelco,L, Franklin,M .J. and Whitman,W.B. TITLE Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods JOURNAL Int. J. Syst. Bacteriol. 46, 727-735 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U39016|g1143306 BASE COUNT 328 a 346 c 445 g 276 t 529 others ORIGIN 1 .......... .......... ........NU UCCGGU(UGA )UCCC|-GCC GGAGGCU-AC 61 UGCUAUUGGG AUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- ------GAC( 121 -UU----CG) GUC------- -----|---C AUGGCGGACG GCUCAGUAAC ACGUGGCUAA 181 CCUACCCUCA GGUGGGGCAU AACCU--CG- G(-GAAA)CU GAGGAUAAUA CCCCAUA--G 241 GAAA--AGAG GUU-(UGGAA U--)-AAUC- CUUU-UCU-- GAA-A-GG-- ---------- 301 (--AUAU--- )------|-- --CC-GCCU- --GAGNNUGG |GGCUGCGU| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUA-CGAU CGGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCACA AUGCAC(GAA A)GUGCGAUG 541 GG|GGNAUCC CAAGUG-CC- ---------- (----)---- -------UAU GC--ACA--G 601 CA--UAGGC| NUUUCCCAAG U--------- ------(CUA AACA--)--- ---------- 661 ----ACUUGG GG-AAUAAGG GCUGGGCA-A GUCCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGG-|NGG CCCGAGUGGU AGCNACUCUU AUUGGGC|CU AAAGCGUCCG UAGCCU|GUU 781 CAGUAAG|-- UCUCUGUUU- AAAUCCUACG GC(UU-A)AC CGUAG-NNC- -UGGCAGAGA 841 UACUGCUN-N ACUU-GGGAC CGGGAGAGGA AGAG|GGUAC UUCGGGNGUA GCG(GUGAAA 901 )UGCGUUGAU CCCUGAGGGA CCACCUAUGG C(GAAG)GCA C-UCUUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNAAAGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUUU GCGAACUA|G GUGUCAUCUG GAC-(C-UC- GG)--GUCCA GGUGG-UGCC 1081 GAAGG(GAAG )CCAUUAAGU UCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(NNNN 1201 AACG)CCGGG NA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGAAGGUCAG GUUGACGA-C 1321 CUUACC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UACUUU 1441 CUUC------ (UCCG-)--- -GAGG-AAA| GGCACU-CAU AGGGGACCGC UGGU(GU-UA 1501 A)ACCAGAGG AAGGAGCGGG NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGUUAGGA CAAUGGGA-A -GCAACCCU( GAGA)AGGGA AGCAAAUCUC 1621 UUAAACCUAA UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACA CCACCCGAGU UGGGUUG-AG GUGA-G-GCC CU-AGCC--- -----(--UU 1801 U--)------ -GG-CUA-AG GUCGAACCU- NGGCUC-AGC AAGGGNGGU. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.aeolicu 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus "aeolicus" str. A. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus "aeolicus" str. A. ORGANISM Methanococcus "aeolicus". REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS isolate_name= A BASE COUNT 328 a 346 c 445 g 276 t 529 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCCGGU(UGA )UCCC|-GCC GGAGGCU-AC 61 UGCUAUUGGG AUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- ------GAC( 121 -UU----CG) GUC------- -----|---C AUGGCGGACG GCUCAGUAAC ACGUGGCUAA 181 CCUACCCUCA GGUGGGGCAU AACCU--CG- G(-GAAA)CU GAGGAUAAUA CCCCAUA--G 241 GAAA--AGAG GUU-(UGGAA U--)-AAUC- CUUU-UCU-- GAA-A-GG-- ---------- 301 (--AUAU--- )------|-- --CC-GCCU- --GAGNNUGG |GGCUGCGU| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUA-CGAU CGGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCACA AUGCAC(GAA A)GUGCGAUG 541 GG|GGNAUCC CAAGUG-CC- ---------- (----)---- -------UAU GC--ACA--G 601 CA--UAGGC| NUUUCCCAAG U--------- ------(CUA AACA--)--- ---------- 661 ----ACUUGG GG-AAUAAGG GCUGGGCA-A GUCCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGG-|NGG CCCGAGUGGU AGCNACUCUU AUUGGGC|CU AAAGCGUCCG UAGCCU|GUU 781 CAGUAAG|-- UCUCUGUUU- AAAUCCUACG GC(UU-A)AC CGUAG-NNC- -UGGCAGAGA 841 UACUGCUN-N ACUU-GGGAC CGGGAGAGGA AGAG|GGUAC UUCGGGNGUA GCG(GUGAAA 901 )UGCGUUGAU CCCUGAGGGA CCACCUAUGG C(GAAG)GCA C-UCUUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNAAAGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUUU GCGAACUA|G GUGUCAUCUG GAC-(C-UC- GG)--GUCCA GGUGG-UGCC 1081 GAAGG(GAAG )CCAUUAAGU UCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(NNNN 1201 AACG)CCGGG NA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGAAGGUCAG GUUGACGA-C 1321 CUUACC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UACUUU 1441 CUUC------ (UCCG-)--- -GAGG-AAA| GGCACU-CAU AGGGGACCGC UGGU(GU-UA 1501 A)ACCAGAGG AAGGAGCGGG NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGUUAGGA CAAUGGGA-A -GCAACCCU( GAGA)AGGGA AGCAAAUCUC 1621 UUAAACCUAA UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACA CCACCCGAGU UGGGUUG-AG GUGA-G-GCC CU-AGCC--- -----(--UU 1801 U--)------ -GG-CUA-AG GUCGAACCU- NGGCUC-AGC AAGGGNGGU. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.1.2-MC 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.1.2 MC.MARIPALUDIS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.1.2 MC.MARIPALUDIS_GROUP. ORGANISM 1.1.1.2 MC.MARIPALUDIS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mc.voltae2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus voltae str. PS DSM 1537 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanococcus voltae str. PS DSM 1537 (T). ORGANISM Methanococcus voltae. REFERENCE 1 AUTHORS Keswani,J., Orkand,S., Premachandran,U., Mandelco,L., Franklin,M.J and Whitman,W.B. TITLE Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods JOURNAL Int. J. Syst. Bacteriol. 46, 727-735 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 1537 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38461|g1145373 DSM 1537 (T) = OCM 70 = ATCC 33273 isolate_name= PS BASE COUNT 340 a 345 c 446 g 301 t 492 others ORIGIN 1 .......... .......... ........AU UCCGGU(UGA )UCCC|-GCC GGAGGUC-AC 61 UGCUAUUGGG GUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -------GC( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAUC ACGUGGUUAA 181 CUUACCCUCA AGCGGAGGAU AACCU--UG- G(-GAAA)CU GAGGAUAAUA CUCCAUA--G 241 GAAA--AAAG GUU-(UGGAA U--)-AAUC- UUUU-UCU-- GAA-A-GC-- ---------- 301 (--AUAU--- )------|-- --GC-GCUU- --GAGNAUAG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACCAA| GCCUA-CGAU CGAUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGGACCC CAAGUG-CC- ---------- (----)---- -------UAU GU--AAC--U 601 CA--UAGGC| UUUUAGUAAG U--------- ------(GUA AAUA--)--- ---------- 661 ----GCUUAA AG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCCAAGUGGU GACCACUCUU AUUGGGU|CU AAAGCGUCCG UAGCCG|GUU 781 UAGUAAG|-- UCCUUGUUU- AAAUCCUCUG GC(UU-A)AC CAGAG-NAC- -UGGCAGGGA 841 UACUGCUA-G ACUU-GGGAC CGGGAGAGGA CAAG|GGUAC UCCAAGGGUA GCG(GUGGAA 901 )UGUGUUGAU CCUUGGAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUUU GCGAACUA|G GUGUUAGGUA GGC-(U-CU- GU)--GCCUA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|ACC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGNC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG CA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUUA UGAUGACCAG GUUGACGA-C 1321 CUUGUC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UAGUUU 1441 CUUC------ (UCCG-)--- -GAGG-NAC| AGCACU-CAU AGGAGACCGN UGGC(GC-UA 1501 A)GUCAGAGG AAGGAGCGGG CAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUGGGA CAAUGGGA-U -GCUACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCCUG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACA CCAUCCGAGU UGGGUUG-AG GUGA-G-GUU UU-GGCC--- -----(--UU 1801 C--)------ -GG-CUA-AG AUCGAACCU- GGGUUC-AGC NAGGAGGG.. .....GUAAC 1861 AAG....... ....(.GAA) CCUGNNNNNN GAUCACCUCC ....|..... ........~~ 1921 ~~~| // LOCUS Mc.voltae 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus voltae str. PS ATCC 33273. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus voltae str. PS ATCC 33273. ORGANISM Methanococcus voltae. REFERENCE 1 AUTHORS Woese,C.R., Achenbach,L., Rouviere,P. and Mandelco,L. TITLE Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts JOURNAL Syst. Appl. Microbiol. 14, 364-371 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33273 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59290 ATCC 33273 = OCM 70 = DSM 1537 (T) isolate_name= PS BASE COUNT 340 a 345 c 446 g 301 t 492 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCC|-GCC GGAGGUC-AC 61 UGCUAUUGGG GUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -------GC( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAUC ACGUGGUUAA 181 CUUACCCUCA AGCGGAGGAU AACCU--UG- G(-GAAA)CU GAGGAUAAUA CUCCAUA--G 241 GAAA--AAAG GUU-(UGGAA U--)-AAUC- UUUU-UCU-- GAA-A-GC-- ---------- 301 (--AUAU--- )------|-- --GC-GCUU- --GAGNAUAG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACCAA| GCCUA-CGAU CGAUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGGACCC CAAGUG-CC- ---------- (----)---- -------UAU GU--AAC--U 601 CA--UAGGC| UUUUAGUAAG U--------- ------(GUA AAUA--)--- ---------- 661 ----GCUUAA AG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCCAAGUGGU GACCACUCUU AUUGGGU|CU AAAGCGUCCG UAGCCG|GUU 781 UAGUAAG|-- UCCUUGUUU- AAAUCCUCUG GC(UU-A)AC CAGAG-NAC- -UGGCAGGGA 841 UACUGCUA-G ACUU-GGGAC CGGGAGAGGA CAAG|GGUAC UCCAAGGGUA GCG(GUGGAA 901 )UGUGUUGAU CCUUGGAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUUU GCGAACUA|G GUGUUAGGUA GGC-(U-CU- GU)--GCCUA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|ACC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGNC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG CA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUUA UGAUGACCAG GUUGACGA-C 1321 CUUGUC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UAGUUU 1441 CUUC------ (UCCG-)--- -GAGG-NAC| AGCACU-CAU AGGAGACCGN UGGC(GC-UA 1501 A)GUCAGAGG AAGGAGCGGG CAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUGGGA CAAUGGGA-U -GCUACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCCUG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACA CCAUCCGAGU UGGGUUG-AG GUGA-G-GUU UU-GGCC--- -----(--UU 1801 C--)------ -GG-CUA-AG AUCGAACCU- GGGUUC-AGC NAGGAGGG.. .....GUAAC 1861 AAG....... ....(.GAA) CCUG...... GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mc.voltae3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus voltae str. A3 OCM 197. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus voltae str. A3 OCM 197. ORGANISM Methanococcus voltae. REFERENCE 1 AUTHORS Keswani,J., Orkand,S., Premachandran,U., Mandelco,L., Franklin,M.J. and Whitman,W.B. TITLE Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods JOURNAL Int. J. Syst. Bacteriol. 46, 727-735 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38488|g1145374 isolate_name= A3 BASE COUNT 330 a 334 c 436 g 292 t 532 others ORIGIN 1 .......... .......... ........NU UCCGGU(UGA )UCCC|-GCC GGAGGUC-AC 61 UGCUAUUGGA GUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -----GNNC( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAUC ACGUGGUUAA 181 CUUACCCUCR AGUGGGGCAU AACCU--UG- G(-GAAA)CU GAGGAUAAUA CCCCAUA--A 241 GAAA--AAAG GUU-(UGGAA U--)-AAUC- UUUU-UCU-- GAA-A-GC-- ---------- 301 (--AUAU--- )------|-- --GC-GCUU- --GAGGAUAG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUA-CGAU CGAUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGNACUC CAAGUG-CC- ---------- (----)---- -------UAU GU--AAC--U 601 CA--UAGGC| UUUUAGUAAG U--------- ------(GUA AAUA--)--- ---------- 661 ----GCUUAA AG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCNAAGUGGU GACNACUCUU AUUGGGU|CU AAAGCGUCCG UAGCCG|GUU 781 UAGUAAG|-- UCCCUGUUU- AAAUCCUCUG GC(UU-A)AC CAGAG-NAC- -UGGCAGGNN 841 UACUGCUA-G ACUU-GGGAC CGGGAGAGGA CAAG|GGUAC UCCAAGGGUA GCG(GUGGAA 901 )UGUGUUGAU CCUUGGAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUCU GCGAACUA|G GUGUUAGGUA GGC-(U-CU- GU)--GCCUA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|ACC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGNGGUUUA AUUGG(ANNN 1201 AACG)CCGGG CA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUUA UGAUGACCAG GUUGACGA-C 1321 CUUGUC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UAGUUU 1441 CUUC------ (UCCG-)--- -GAGG-AAA| CGCACU-CAU AGGGNACCGC UGGC(GC-UA 1501 A)GUCAGAGG AAGGAGCGGG NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUGGGA CAAUGGGA-U -GCUACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCCUG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUGCUCCU UGCACACACC 1741 GCCCGNCACA CCAYCCGAGU UGGGUUG-AG GUGA-G-GUU UU-GGCC--- -----(--UU 1801 C--)------ -GG-CUA-AG AUCGAACCU- GGGUUC-AGC GAGGA..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.vanniel 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus vannielii str. EY33. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus vannielii str. EY33. ORGANISM Methanococcus vannielii. REFERENCE 1 AUTHORS Jarsch,M. and Boeck,A. TITLE Sequence of the 16S ribosomal RNA gene from Methanococcus vannielii: Evolutionary implications JOURNAL Syst. Appl. Microbiol. 6, 54-59 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M36507 isolate_name= EY33 BASE COUNT 335 a 371 c 474 g 286 t 458 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCC|-GCC GGAGGCU-AC 61 UGCUAUUGGG GUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -------GU( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAAC ACGUGGUUAA 181 CUUAACCUCA GGUGGAGCAU AACCU--UG- G(-GAAA)CU GAGGAUAAUU CUCCAUA--A 241 GAAA--AGCA GUC-(UGGAA C--)-GAUU- CUUU-UCU-- GAA-A-GC-- ---------- 301 (--AUAU--- )------|-- --GC-GCCC- --GAGGAUAG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACCAA| GCCUA-CGAU CGAUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGGACCC CAAGUG-CU- ---------- (----)---- -------CAU GC--ACA--G 601 CA--UGGGC| UUUUAUCAAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUUGA GG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)U 721 ACCGA-|CGG CCCGAGUGGU AGCCACUCUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CAGUAAG|-- UCCCUGUUU- AAAUUCUCUG GC(UU-A)AC CAGAG-GAC- -UGGCAGGGA 841 UACUGCUG-G ACUU-GGGAC CGGGAGAGGA CAAG|GGUAC UCCAGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCUUGGAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUCU GCGAACUA|G GUGUCACCUG GGC-(C-UC- GA)--GCCCA GGUGG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG CA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGACGGCCAG GUUGACGA-C 1321 CUUGCC-UGA -AGCGCUGAG |AGGUGGUGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-GACUAC 1441 UUUC------ (UCCG-)--- -GAAG-GUA| AGCACU-CAU AGGGGACCGC UAGC(GC-UA 1501 A)GCUAGAGG AAGGAGCGGG CAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUAGGA CAAUGGGC-U -GCUACCCU( GAAA)AGGGA CGCGAAUCUC 1621 CGAAACCUAG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACA CCACCCGAGU UGGGUUC-AG GUGA-G-GCC UU-GGCC--- -----(--UU 1801 U--)------ -GG-CUA-GG GUCGAACCU- GGGCUC-AGC GAGGGGGGUG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mc.maripa3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus maripaludis str. C5 OCM 209. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus maripaludis str. C5 OCM 209. ORGANISM Methanococcus maripaludis. REFERENCE 1 AUTHORS Keswani,J., Orkand,S., Premachandran,U., Mandelco,L., Franklin,M.J. and Whitman,W.B. TITLE Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods JOURNAL Int. J. Syst. Bacteriol. 46, 727-735 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38486|g1145366 isolate_name= C5 BASE COUNT 315 a 346 c 444 g 272 t 547 others ORIGIN 1 .......... .......... ........NU UCCGGU(UGA )UCCC|-GCC GGAGGCC-AC 61 UGCUAUUGGG AUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -----GNNU( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAAC ACGUGGUUAA 181 CAUACCCUCA GGUGGGGGAU AACCU--UG- G(-GAAA)CU GAGGAUAAUG CCCCAUA--G 241 AAAA--AGCA GUC-(UGGAA U--)-GAUU- CUUU-UUC-- GAA-A-GC-- ---------- 301 (--ACAU--- )------|-- --GC-NCNU- --NNNNNUUG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUA-CGAU CGGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGNAUCC CAAGUG-CU- ---------- (----)---- -------CAU GC--ACA--G 601 CA--UGGGC| UUUUAUCAAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUUGA GG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCCGAGUGGU GGNNACUCUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CAGUAAG|-- UCCCUGUUU- AAAUCCUGCG GC(UU-A)AC CGCAG-NNC- -UGGCAGGNN 841 UACUGCUG-N NCNU-GGGAC CGGGAGAGGA CAAG|GGUAC UUCAGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCUUGAAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUCU GCGAACUA|G GUGUUAGGUA GGC-(C-CN- GU)--GCCUA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGNGNUUUA AUUGG(ANNN 1201 AACG)CCGGG NA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGACGGCCAG GUUGACGA-C 1321 CUUGCC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UACUUU 1441 UUCC------ (UNCG-)--- -GGAG-AAA| GGCACU-CAU AGGGNACCGC UGGC(GC-UA 1501 A)GUCAGAGG AAGGAGCGGG NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUAGGA CAAUGGGC-C -GCAACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCUAG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUGCUCCN UGCACACACC 1741 GCCCNNCACA CCACCCGAGU UGGGUUG-AA GUGA-G-GCC UU-GGCC--- -----(--UU 1801 U--)------ -GG-CUA-GG GUCGAACUU- GGGCUC-AGC GAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.maripa5 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus maripaludis str. C7 OCM 364. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus maripaludis str. C7 OCM 364. ORGANISM Methanococcus maripaludis. REFERENCE 1 AUTHORS Keswani,J., Orkand,S., Premachandran,U., Mandelco,L., Franklin,M.J. and Whitman,W.B. TITLE Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods JOURNAL Int. J. Syst. Bacteriol. 46, 727-735 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38941|g1145368 isolate_name= C7 BASE COUNT 314 a 337 c 445 g 269 t 559 others ORIGIN 1 .......... .......... ........NU UCCGGU(UGA )UCCC|-GCC GGNGGCC-AC 61 UGCUAUUGGG AUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -----GNNU( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAAC ACGUGGUUAA 181 CAUACCCUCA GGUGGGGGAU AACCU--UG- G(-GAAA)CU GAGGAUAAUA CCCCAUA--G 241 AAAA--AGCA GUC-(UGGAA U--)-GAUU- CUUU-UUC-- GAA-A-GC-- ---------- 301 (--ACAU--- )------|-- --GC-GCCU- --GNNNNUUG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUA-CGAU CGGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 NGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGNAUCC CAAGUG-CU- ---------- (----)---- -------CAU GC--ACA--G 601 CA--UGGGC| UUUUAUCAAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUUGA GG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCNGAGUGGU GGNNNCUCUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CAGUAAG|-- UCCCUGUUU- AAAUCCUGCG GC(UU-A)AC CGCAG-NNC- -UGGCAGGNN 841 UACUGCUN-N NNNU-GGGAC CGGGAGAGGA CAAG|GGUAC UUCAGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCUUGAAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUCU GCGAACUA|G GUGUUAGGUA GGC-(C-CN- GU)--GCCUA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|N|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGNUUA AUUGG(ANNN 1201 AACG)CCGGG NA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGACGGCNAG GNUGACGA-C 1321 CUUGCC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UACUUU 1441 UUCC------ (UGCG-)--- -GGAG-AAA| GGCACU-CAU AGGGNANCGC UGGC(GC-UA 1501 A)GUCAGAGG AAGGAGCGGG NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 AGGGGCUACA AUGGCUAGGA CAAUGGGC-C -GCAACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCUAG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUNCUNNN UGCACACACC 1741 GNNNNNNACA CCACCCGAGU UGGGUUG-AA GUGA-G-GCC UU-GGCC--- -----(--UU 1801 C--)------ -GG-CUA-GG GUCGAACUU- GGGCUC-AGC GAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.maripa4 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus maripaludis str. C6 OCM 363. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus maripaludis str. C6 OCM 363. ORGANISM Methanococcus maripaludis. REFERENCE 1 AUTHORS Keswani,J., Orkand,S., Premachandran,U., Mandelco,L., Franklin,M.J and Whitman,W.B. TITLE Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods JOURNAL Int. J. Syst. Bacteriol. 46, 727-735 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38487|g1145367 isolate_name= C6 BASE COUNT 312 a 345 c 441 g 270 t 556 others ORIGIN 1 .......... .......... ........NU UCCGGU(UGA )UCCC|-GCC GGNGGCC-AC 61 UGCUAUUGGG AUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -----GNNU( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAAC ACGUGGUUAA 181 CAUACCCUCA GGUGGGGGAU AACCU--UG- G(-GAAA)CU GAGGAUAAUA CCCCAUA--G 241 AAAA--AGCA GUC-(UGGAA U--)-GAUU- CUUU-UUC-- GAA-A-GC-- ---------- 301 (--ACAU--- )------|-- --GC-GCCU- --GANNNUUG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUA-CGAU CGGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 NGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGNAUCC CAAGUG-CU- ---------- (----)---- -------CAU GC--ACA--G 601 CA--UGGGC| UUUUAUCAAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUUGA GG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCCGAGUGGU GGNNNCUCUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CAGUAAG|-- UCCCUGUUU- AAAUCCUGCG GC(UU-A)AC CGCAG-NNC- -UGGCAGGNN 841 UACUGCUG-N NCUU-GGGAC CGGGAGAGGA CAAG|GGUAC UUCAGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCUUGAAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUCU GCGAACUA|G GUGUUAGGUG GGC-(C-CC- GU)--GCCCN UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU NGNCGNNNNA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ANNN 1201 AACG)CCGGN NA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGACGGCNAG GNUGACGA-C 1321 CUUGCC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UACUUU 1441 UUCC------ (UGCG-)--- -GGAG-AAA| GGCACU-CAU AGGGNANCGC UGGC(GC-UA 1501 A)GUYAGAGG AAGGAGCGGG NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUAGGA CAAUGGGC-C -GCAACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCUAG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUNCUCNN UGCACACACC 1741 GCCNNNCACA CCACCCGAGU UGGGUUG-AA GUGA-G-GCC UU-GGCC--- -----(--UU 1801 U--)------ -GG-CUA-GG GUCGAACUU- GGGCUC-AGC GAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.deltae2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus deltae str. delta RC DSM 2771 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanococcus deltae str. delta RC DSM 2771 (T). ORGANISM Methanococcus deltae. REFERENCE 1 AUTHORS Keswani,J., Orkand,S., Premachandran,U., Mandelco,L., Franklin,M.J. and Whitman,W.B. TITLE Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods JOURNAL Int. J. Syst. Bacteriol. 46, 727-735 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 2771 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38485|g1145364 DSM 2771 (T) = OCM 151 isolate_name= delta RC BASE COUNT 317 a 339 c 444 g 273 t 551 others ORIGIN 1 .......... .......... ........NU UCCGGU(UGA )UCCC|-GCC NNAGGCC-AC 61 UGCUAUUGGG AUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -----GNNU( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAAC ACGUGGUUAA 181 CAUACCCUCA GGUGGGGGAU AACCU--UG- G(-GAAA)CU GAGGAUAAUN CCCCAUA--G 241 AAAA--AGCA GUC-(UGGAA C--)-GAUU- CUUU-UUC-- GAA-A-GC-- ---------- 301 (--AUAU--- )------|-- --GC-GCNU- --NANNNUUG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUA-CGAU CGGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----AAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 NGGCCC(UAC G)GGNCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGNAUCC CAAGUG-CU- ---------- (----)---- -------CAU GC--ACA--G 601 CA--UGGGC| UUUUAUCAAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUUGA GG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCCGAGUGGU GGNNACUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CAGUAAG|-- UCCUUGUUU- AAAUCCUGCG GC(UU-A)AC CGCAG-NAC- -UGGCAGGGA 841 UACUGCUG-N NCUU-GGGAC CGGGAGAGGA CAAG|GGUAC UUCAGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCUUGAAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACGNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUUU GCGAACUA|G GUGUUAGGUG GGC-(C-CN- GU)--GCCNA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGNUUA AUUGG(ANGN 1201 AACG)CCGGG NA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGACGGCCAG GNUGACGA-C 1321 CUUGCC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UACUUU 1441 UUCC------ (UNCG-)--- -GGAG-AAA| GGCACU-CAU AGGGNACCGC UGGC(GC-UA 1501 A)GUCAGAGG AAGGAGCGGG NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUAGGA CAAUGGGC-C -GCAACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCUAG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUNUGU CCCUGCUNNN UGCACACACN 1741 GCCNNNNACA CCACCCGAGU UGGGUUG-AA GUGA-G-GCC UU-GGCC--- -----(--UU 1801 U--)------ -GG-CUA-GG GUCGAACUU- GGGCUC-AGC GAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.deltae 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus deltae str. D. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus deltae str. D. ORGANISM Methanococcus deltae. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS isolate_name= D BASE COUNT 317 a 339 c 447 g 273 t 548 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCCGGU(UGA )UCCC|-GCC NNAGGCC-AC 61 UGCUAUUGGG AUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -------GU( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAAC ACGUGGUUAA 181 CAUACCCUCA GGUGGGGGAU AACCU--UG- G(-GAAA)CU GAGGAUAAUN CCCCAUA--G 241 AAAA--AGCA GUC-(UGGAA C--)-GAUU- CUUU-UUC-- GAA-A-GC-- ---------- 301 (--AUAU--- )------|-- --GC-GCNU- --NANNNUUG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUA-CGAU CGGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----AAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 NGGCCC(UAC G)GGNCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGNAUCC CAAGUG-CU- ---------- (----)---- -------CAU GC--ACA--G 601 CA--UGGGC| UUUUAUCAAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUUGA GG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCCGAGUGGU GGNNACUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CAGUAAG|-- UCCUUGUUU- AAAUCCUGCG GC(UU-A)AC CGCAG-NAC- -UGGCAGGGA 841 UACUGCUG-N NCUU-GGGAC CGGGAGAGGA CAAG|GGUAC UUCAGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCUUGAAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACGNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUUU GCGAACUA|G GUGUUAGGUG GGC-(C-CN- GU)--GCCNA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGNUUA AUUGG(ANGN 1201 AACG)CCGGG NA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGACGGCCAG GNUGACGA-C 1321 CUUGCC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UACUUU 1441 UUCC------ (UNCG-)--- -GGAG-AAA| GGCACU-CAU AGGGNACCGC UGGC(GC-UA 1501 A)GUCAGAGG AAGGAGCGGG NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUAGGA CAAUGGGC-C -GCAACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCUAG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUNUGU CCCUGCUNNN UGCACACACN 1741 GCCNNNNACA CCACCCGAGU UGGGUUG-AA GUGA-G-GCC UU-GGCC--- -----(--UU 1801 U--)------ -GG-CUA-GG GUCGAACUU- GGGCUC-AGC GAGGGGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.maripal 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus maripaludis str. JJ ATCC 43000. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus maripaludis str. JJ ATCC 43000. ORGANISM Methanococcus maripaludis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43000 ATCC 43000 = DSM 2067 = OCM 175 isolate_name= JJ BASE COUNT 315 a 338 c 437 g 271 t 563 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCCGGU(UGA )UCCC|-GCC GGAGGCC-AC 61 UGCUAUUGGG AUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -------GU( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAAC NCGUGGUUAA 181 CAUACCCNCA GGUGGGGGAU AACCU--UG- G(-GAAA)CU GAGGAUAAUA CCCCAUA--G 241 AAAA--AGCA GUC-(UGGAA C--)-GAUU- CUUU-UUC-- GAA-A-GC-- ---------- 301 (--AUAU--- )------|-- --GC-GCCU- --NANNNUUG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUN-CGAU CGGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----AAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGNAUCC CAAGUG-CU- ---------- (----)---- -------CAU GC--ACA--G 601 CA--UGGGC| UUUUAUCAAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUUGA GG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCCGAGUGGU GGNNNCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CAGUAAG|-- UCCUUGUUU- AAAUCCUGCG GC(UU-A)AC CGCAG-NNC- -UGGCAGGGA 841 UACUGCUG-N NCNU-GAGAC CGGGAGAGGA CAAG|GGUAC UUCAGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCUUGAAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUUU GCGAACUA|G GUGUUAGGUG GGC-(C-CN- GU)--GCCCA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGG.... ......UUUA AUU..(...N 1201 AACG)CCGGG NA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGACGGCCAG GNUGACGA-C 1321 CUUGCC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UACUUU 1441 UUCC------ (UNAG-)--- -GGAG-AAA| GGCACU-CAU AGGGNACCGC UGGC(GC-UA 1501 A)GUNAGAGG ANGGAGCGGN NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUAGGA CAAUGGGC-C -GCAACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCUAG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUNCUCNN UGCACACACC 1741 GNCNNNCACA CCACCCGAGU UGGGUUG-AA GUGA-G-GCC UU-GGCC--- -----(--UU 1801 U--)------ -GG-CUA-GG GUCGAACUU- GGGCUC-AGC GAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mc.maripa2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcus maripaludis str. JJ DSM 2067. ACCESSION No information KEYWORDS No information. SOURCE Methanococcus maripaludis str. JJ DSM 2067. ORGANISM Methanococcus maripaludis. REFERENCE 1 AUTHORS Keswani,J., Orkand,S., Premachandran,U., Mandelco,L., Franklin,M.J and Whitman,W.B. TITLE Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods JOURNAL Int. J. Syst. Bacteriol. 46, 727-735 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 2067 Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38484|g1145365 DSM 2067 = ATCC 43000 = OCM 175 isolate_name= JJ BASE COUNT 315 a 338 c 437 g 271 t 563 others ORIGIN 1 .......... .......... ........NU UCCGGU(UGA )UCCC|-GCC GGAGGCC-AC 61 UGCUAUUGGG AUUCGACUAA GCCAUGCGA- --GUCU-AUG ---------- -------GU( 121 -UU----CG) GC-------- -----|---C AUGGCGGACG GCUCAUUAAC NCGUGGUUAA 181 CAUACCCNCA GGUGGGGGAU AACCU--UG- G(-GAAA)CU GAGGAUAAUA CCCCAUA--G 241 AAAA--AGCA GUC-(UGGAA C--)-GAUU- CUUU-UUC-- GAA-A-GC-- ---------- 301 (--AUAU--- )------|-- --GC-GCCU- --NANNNUUG |GACUGCGC| UCGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACNAA| GCCUN-CGAU CGGUACGGG| CCUU(GAGA) 421 GAGG------ ---------- ----AAGCCC G|GAGAUGGG GA(CUGAGA- CACG)GCCCN 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGNAUCC CAAGUG-CU- ---------- (----)---- -------CAU GC--ACA--G 601 CA--UGGGC| UUUUAUCAAG U--------- ------(GUA AACA--)--- ---------- 661 ----GCUUGA GG-AAUAAGG GCUGGGCA-A GUUCG-GUG( CCA--GCAGC CGCGGUAA)C 721 ACCGA-|CGG CCCGAGUGGU GGNNNCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CAGUAAG|-- UCCUUGUUU- AAAUCCUGCG GC(UU-A)AC CGCAG-NNC- -UGGCAGGGA 841 UACUGCUG-N NCNU-GAGAC CGGGAGAGGA CAAG|GGUAC UUCAGGGGUA GCG(GUGAAA 901 )UGUGUUGAU CCUUGAAGGA CCACCUAUGG C(GAAG)GCA C-UUGUCUGG AACGGGUCCG 961 ACGGUGAGGG ACNAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACUUU GCGAACUA|G GUGUUAGGUG GGC-(C-CN- GU)--GCCCA UCUAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU UCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGG.... ......UUUA AUUNN(NNNN 1201 AACG)CCGGG NA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AUGA UGACGGCCAG GNUGACGA-C 1321 CUUGCC-UGA -AGCGCUGAG |AGGUGGNGC AUG|GCCAUC GUCA|GCUCG U|ACC(GCGA 1381 )GGCGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGUG |CCCUAUG-U UGC-UACUUU 1441 UUCC------ (UNAG-)--- -GGAG-AAA| GGCACU-CAU AGGGNACCGC UGGC(GC-UA 1501 A)GUNAGAGG ANGGAGCGGN NAACGAUAGG UCCGCAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUAGGA CAAUGGGC-C -GCAACCCU( GAAA)AGGGA CGCAAAUCUC 1621 CUAAACCUAG UCGUAGUUCG GAUCGUGGGC (UGUAACUC) GCCCACGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCAGU(UCAU AAU)ACUGCG GUGAAUGUGU CCCUNCUCNN UGCACACACC 1741 GNCNNNCACA CCACCCGAGU UGGGUUG-AA GUGA-G-GCC UU-GGCC--- -----(--UU 1801 U--)------ -GG-CUA-GG GUCGAACUU- GGGCUC-AGC GAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.2-METH 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.2 METHANOBACTERIALES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.2 METHANOBACTERIALES. ORGANISM 1.1.2 METHANOBACTERIALES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.2.1-MT 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.2.1 MT.FERVIDUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.2.1 MT.FERVIDUS_GROUP. ORGANISM 1.1.2.1 MT.FERVIDUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mt.fervid1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanothermus fervidus.. ACCESSION No information KEYWORDS No information. SOURCE Methanothermus fervidus. ORGANISM Methanothermus fervidus. REFERENCE 1 AUTHORS Haas,E.S., Brown,J.W., Daniels,C.J. and Reeve,J.N. TITLE Genes encoding the 7S RNA and a Ser-tRNA are linked to one of the two rRNA operons in the genome of the extremely thermophilic archaebacterium Methanothermus fervidus JOURNAL Gene 90, 51-59 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M32222 BASE COUNT 305 a 421 c 526 g 228 t 444 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGUU(UGA )UCCU|-GGC GGAGGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCAA- --GUCGAACG ---------- ------GGC( 121 -CU---UGU) GCC------- -----|---C GUGGCGAACG GCUCAGUAAC ACGUGGACAA 181 CCUACCCUGG GGUCCGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCGGAUA--G 241 GCGA--GGUC UCC-(UGGAA U--)-GGGG- CCUC-GCC-- GAA-A-GGUC ---------- 301 (--UUUU--- )------|-- GACC-GCCC- --CAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGGUA GG(GUAACGG )CCUACCAA| GCCUA-CGAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGG GC(CUGAGA- CAAG)GCCCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUCCGCA AUGCGC(GAA A)GCGCGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------ACU CC-GUAA--G 601 GA--GUGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CCCGAGUGGU GGCCGCGUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 CGGUAAG|-- UCUCCGGUG- AAAGCCCGCA GC(UC-A)AC UGCGG-GAGU -AGCCGGAGA 841 UACUGCCG-G ACUU-GGGGC CGGGAGAGGC CGGA|GGUAC CCCCGGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCCGGGGGGA CCACCUGUGG C(GAAG)GCG U-CCGGCUGG AACGGGCCCG 961 ACGGUGAGGG ACGAAAGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GCGGACUU|G GUGUUGGGGC AAC-(C-UC- GA)--GUUGC CCCAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCG |CCCCUAG-U UGC-CAGCGG 1441 GUCCC----- (GUAA-)--- GGGACGCCG| GGCACA-CUA GGGGGACCGC CAGC(GA-UA 1501 A)GCUGGAGG AAGGUGCGGG CGACGGUAGG UCCGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGGGCUACA AUGGCCGGGA CAAUGGGU-A -CCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 AUAAACCCGG CCGUAGUUCG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGGG(UCAC UAU)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAC GGGGUUC-GG AUGA-G-GCC AU-GGCC--- -----(--UC 1801 U--)------ -GG-CCA-UG GUCGAAUCC- GGGCCC-CGU GAGGAGGGCG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mt.fervidu 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanothermus fervidus str. V 24 S DSM 2088 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanothermus fervidus str. V 24 S DSM 2088 (T). ORGANISM Methanothermus fervidus. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the archaea JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 2088 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59145 isolate_name= V 24 S BASE COUNT 295 a 391 c 485 g 221 t 532 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGUU(UGA )UCCU|-GGC GGAGGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCAA- --GUCGAACG ---------- ------GGC( 121 -CU----UG) NUNA------ -----|---C GUGGCGAACG GCUCAGUAAC ACGUGGACAA 181 CCUACCCUGG GGUNCGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCGGAUA--G 241 GCGA--GGUC UNC-(UGGAA N--)-NGGG- CCUC-GCC-- GAA-A-GGUC ---------- 301 (--UUUU--- )------|-- GACC-GCCC- --CNNNAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGGUA GG(GUAACGG )CCUACCAA| GCCUA-CGAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCN G|GAGACGGG GC(CUGAGA- CAAG)NCCCN 481 NAGCCC(UAC G)GGNNGCAG CAGGCGCG-A AAACUCCGCA AUGCNN(GAA A)GCGCGACG 541 GG|GGGACCC CCAGUN-CG- ---------- (----)---- -------CUC GU--AAN--G 601 NG--AGCGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A NCCCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CCCGAGUGGU GGCCGCGUUU AUUGGGC|CU AAAGCGUCNG UAGCCN|GUC 781 CGGUAAG|-- UCUCCGGUG- AAAGCCNNGA GC(UC-A)AC UGCGG-GAGU -NNCNGGAGA 841 UACUGCCN-N NCUN-NGGGC AGGGAGAGGC CGGA|GGUAC UCCCGGGGUA GGG(GUGAAA 901 )UCCUGUAGA UCCGGGNNGA CCACCUGUNG C(GAAG)GCG U-CCGGCUGG AACGGGCCCG 961 ACGGUGAGGG ACGAAAGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GCGGACUU|G GUGUUGGGGC AAC-(C-UC- GA)--GUUGC CCCAG-UGCC 1081 GAAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCN -UGUGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CNA CGGN--AGGA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCG |CCCCUAG-U UGC-CAGCN- 1441 GUCCC----- (GUANN)--- -GGACGCCG| GGCACA-CUA GGGGGACCGC CAGC(GA-UA 1501 A)GCUGGAGG AAGGUGCGGG NGACGGUAGG UCCGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGGGCUACA AUGGCCGGGA CAAUGGGU-A -NCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 AUAAACCCGG CNGUAGUUCG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGGG(UCAC UAU)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAC GGGGUUC-GG AUGA-G-GC. ....GNN--- -----(--UC 1801 U--)------ -GG-CCA-UN GUCGAAUCC- GGGCCC-CG. .......... .....GUAAC 1861 AAG....... ....(.GAA) CCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.2.2-ME 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.2.2 METHANOBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.2.2 METHANOBACTERIUM_GROUP. ORGANISM 1.1.2.2 METHANOBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.2.2.1 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.2.2.1 MB.FORMICICUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.2.2.1 MB.FORMICICUM_GROUP. ORGANISM 1.1.2.2.1 MB.FORMICICUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS sym.M11 1924 bp RNA RNA 02-JUL-1998 DEFINITION methanogen symbiont. ACCESSION No information KEYWORDS No information. SOURCE methanogen symbiont. ORGANISM methanogen symbiont. REFERENCE 1 AUTHORS Ohkuma,M., Noda,S., Horikoshi,K. and Kudo,T. TITLE Phylogeny of symbiotic methanogens in the gut of the termite Reticulitermes speratus JOURNAL FEMS Microbiol. Lett. 134, 45-50 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D64030|g984631 symbiont_of= methanogen symbiont in termite gut isolate_name= M11 BASE COUNT 72 a 54 c 90 g 83 t 1625 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|.GGAUCC CAAGUN-UC- ---------- (----)---- -------AUU CU-UAAA--A 601 GG--AUGAC| UUUUCAUUUG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU GG-AAUAAGA GCUGGGCA-A GACUG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCAG-|CAG CUCGAGUGGU GGUCGUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UUUUAAG|-- UCUUUGGUG- AAAGUCUAUA GC(UU-A)AC UGUAG-AAAU -UGCUGGGGA 841 UACUAUUG-A ACUU-GAGGU CGGGAGAGGU UAGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-C....... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.M12 1924 bp RNA RNA 02-JUL-1998 DEFINITION methanogen symbiont. ACCESSION No information KEYWORDS No information. SOURCE methanogen symbiont. ORGANISM methanogen symbiont. REFERENCE 1 AUTHORS Ohkuma,M., Noda,S., Horikoshi,K. and Kudo,T. TITLE Phylogeny of symbiotic methanogens in the gut of the termite Reticulitermes speratus JOURNAL FEMS Microbiol. Lett. 134, 45-50 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D64031|g984632 symbiont_of= methanogen symbiont in termite gut isolate_name= M12 BASE COUNT 71 a 54 c 90 g 84 t 1625 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|.GGAUCC CAAGUN-UC- ---------- (----)---- -------AUU CU-UAAA--G 601 GG--AUGAC| UUUUCAUUUG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU UG-AAUAAGA GCUGGGCA-A GACUG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCAG-|CAG CUCGAGUGGU GGUCGUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UUUUAAG|-- UCUUUGGUG- AAAGUCUAUA GC(UU-A)AC UGUAG-AAAU -UGCUGGGGA 841 UACUAUUG-A ACUU-GAGGU CGGGAGAGGU UAGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-C....... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.M1 1924 bp RNA RNA 02-JUL-1998 DEFINITION methanogen symbiont. ACCESSION No information KEYWORDS No information. SOURCE methanogen symbiont. ORGANISM methanogen symbiont. REFERENCE 1 AUTHORS Ohkuma,M., Noda,S., Horikoshi,K. and Kudo,T. TITLE Phylogeny of symbiotic methanogens in the gut of the termite Reticulitermes speratus JOURNAL FEMS Microbiol. Lett. 134, 45-50 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D64025|g984626 symbiont_of= methanogen symbiont in termite gut isolate_name= M1 BASE COUNT 71 a 54 c 92 g 83 t 1624 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|.GGAUCC CAAGUG-UC- ---------- (----)---- -------AUU CU-UAAA--G 601 GG--AUGAC| UUUUCAUUUG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU GG-AAUAAGA GCUGGGCA-A GACUG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCAG-|CAG CUCGAGUGGU GGUCGUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UUUUAAG|-- UCUUUGGUG- AAAGUCUAUA GC(UU-A)AC UGUAG-AAAU -UGCUGGGGA 841 UACUAUUG-A ACUU-GAGGU CGGGAGAGGU UAGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-C....... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.M5 1924 bp RNA RNA 02-JUL-1998 DEFINITION methanogen symbiont. ACCESSION No information KEYWORDS No information. SOURCE methanogen symbiont. ORGANISM methanogen symbiont. REFERENCE 1 AUTHORS Ohkuma,M., Noda,S., Horikoshi,K. and Kudo,T. TITLE Phylogeny of symbiotic methanogens in the gut of the termite Reticulitermes speratus JOURNAL FEMS Microbiol. Lett. 134, 45-50 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D64028|g984629 symbiont_of= methanogen symbiont in termite gut isolate_name= M5 BASE COUNT 71 a 53 c 91 g 84 t 1625 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|.GGAUCC CAAGUN-UC- ---------- (----)---- -------AUU CU-UAAA--G 601 GG--AUGAC| UUUUCAUUUG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU GG-AAUAAGA GCUGGGCA-A GACUG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCAG-|CAG CUCGAGUGGU GGUCGUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UUUUAAG|-- UCUUUGGUG- AAAGUCUAUA GC(UU-A)AC UGUAG-AAAU -UGCUGGGGA 841 UACUAUUG-A ACUU-GAGGU CGGGAGAGGU UAGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCAC-UGUGG C(GAAG)GCG U-CU...... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.M4 1924 bp RNA RNA 02-JUL-1998 DEFINITION methanogen symbiont. ACCESSION No information KEYWORDS No information. SOURCE methanogen symbiont. ORGANISM methanogen symbiont. REFERENCE 1 AUTHORS Ohkuma,M., Noda,S., Horikoshi,K. and Kudo,T. TITLE Phylogeny of symbiotic methanogens in the gut of the termite Reticulitermes speratus JOURNAL FEMS Microbiol. Lett. 134, 45-50 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D64027|g984628 symbiont_of= methanogen symbiont in termite gut isolate_name= M4 BASE COUNT 226 a 205 c 294 g 232 t 967 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|.GGAUCC CAAGUG-UC- ---------- (----)---- -------AUU CU-UAAA--G 601 GG--AUGAC| UUUUCAUUUG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU GG-AAUAAGA GCUGGGCA-A GACUG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCAG-|CAG CUCGAGUGGU GGUCGUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UUUUAAG|-- UCUUUGGUG- AAAGUCUAUA GC(UU-A)AC UGUAG-AAAU -UGCUGGGGA 841 UACUAUUG-A ACUU-GAGGU CGGGAGAGGU UAGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-CUAACUGG AACGAUCCUG 961 ACGGUGAGGG ACGAAAGCUA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUANC 1021 UGUAAACGAU GCGGACUU|G GUGUUGGGAU GNC-(U-UU- GA)--GUUGU UUCAG-UGCC 1081 GAAGG(GAAN )CUGUUAAGU CCGU|C|NCC UGGGAAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACCAC GCGUGGANCC -UGCGGUUUA AUUGG(AUUC 1201 CACC)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGG-U 1321 CUUGCU-UAA -CAAGCUGAG |AGGAGGUGC AUG|NCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCAU 1441 G-UC-CU--U (UUUUU)--- GGAUGUUUG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)AUUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCUAANA CAAUGGGU-U -CUGACAUU( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACUUGG UCGUAGUUCG GAUUGAGGGC (UGUAACUC) GCCCUCAUGA AGCUGGAAUG 1681 CGUAGUAAUC GUGUN(NCAU AAU)CGCACG GUGAAUAUGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.M10 1924 bp RNA RNA 02-JUL-1998 DEFINITION methanogen symbiont. ACCESSION No information KEYWORDS No information. SOURCE methanogen symbiont. ORGANISM methanogen symbiont. REFERENCE 1 AUTHORS Ohkuma,M., Noda,S., Horikoshi,K. and Kudo,T. TITLE Phylogeny of symbiotic methanogens in the gut of the termite Reticulitermes speratus JOURNAL FEMS Microbiol. Lett. 134, 45-50 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D64029|g984630 symbiont_of= methanogen symbiont in termite gut isolate_name= M10 BASE COUNT 70 a 56 c 91 g 82 t 1625 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|.GGAUCC CAAGUN-UC- ---------- (----)---- -------AUU CU-UAAA--G 601 GG--AUGAC| UUUUCAUUUG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU GG-AAUAAGA GCUGGGCA-A GACUG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCAG-|CAG CUCGAGUGGU GGUCGUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UUUUAAG|-- UCUUUGGUG- AAAGUCUAUA GC(UU-A)AC UGUAG-AAAU -UGCUGGGGA 841 UACUAUUG-A CCUU-GAGGC CGGGAGAGGU UAGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-C....... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.M2 1924 bp RNA RNA 02-JUL-1998 DEFINITION methanogen symbiont. ACCESSION No information KEYWORDS No information. SOURCE methanogen symbiont. ORGANISM methanogen symbiont. REFERENCE 1 AUTHORS Ohkuma,M., Noda,S., Horikoshi,K. and Kudo,T. TITLE Phylogeny of symbiotic methanogens in the gut of the termite Reticulitermes speratus JOURNAL FEMS Microbiol. Lett. 134, 45-50 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D64026|g984627 symbiont_of= methanogen symbiont in termite gut isolate_name= M2 BASE COUNT 89 a 68 c 105 g 97 t 1565 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .....CU-AC 61 UGCUAUUGGG AUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- --------A( 121 -NUUUAUAU) U--------- -----|---C GUGGCAUACG GCUCAGUAAC ACGUGGAUAA 181 CUUACCCUUA GGAUCGGGAU AAUCC--UG- G(-GAAA)CU GGGGCUAAUA CUGAAUA--G 241 GCAA-UUUUU UUC-(UGGAA U--)-GGUU- GUUUUGUU-- UAA-AUG--- ---------- 301 (UUUUUUUU- )------|-- ---C-GCCU- --GAGGAUAG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUA AG(GUAAUGG )CUUACCAA| GCCAG-UUAU CGGUACAGG| UUGU(GAGA) 421 GCAA------ ---------- ----GGGCCU G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGACCC(UAC G)GGGUGCAG CAGGCGCG-A AACCUCCGCA AUGUGA(GAA A)UCGCGACG 541 GG|GGGAUCC .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mbb.arbori 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobrevibacter arboriphilicus str. DH1 DSM 1536. ACCESSION No information KEYWORDS No information. SOURCE Methanobrevibacter arboriphilicus str. DH1 DSM 1536. ORGANISM Methanobrevibacter arboriphilicus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 1536 DSM 1536 = ATCC 33747 (T) isolate_name= DH1 BASE COUNT 344 a 318 c 444 g 342 t 476 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCUGUU(UGA )UCCU|-GGC AGAGGCU-AC 61 UGCUAUUGGG GUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- --------A( 121 -UUUUUUUU) U--------- -----|---C GUGGCAUACG GCUCAGUAAC ACGUGGAUAA 181 CCUACCCUUA GGACUGGGAU AACCC--UG- G(-GAAA)CU GGGGCUAAUA CUGGAUA--G 241 AUCGUUUUUU UCC-(UGUAA U--)-GGUA- UUUC-GUC-- UAA-AUG--- ---------- 301 (UUUUUUUU- )------|-- ---C-GCCU- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUU AG(GUAAUGG )CUUACCAA| GCCGU-UUAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGNNGCAG CAGGCGCG-A AACCUCCGCA AUGUGA(GAA A)UCGCGACG 541 GG|GGGACCC CAAGUG-CC- ---------- (----)---- -------AUU CU-UAAC--G 601 GG--AUGGC| UUUUCUUAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU GG-AAUAAGA GCUGGGCA-A GACNG-GUG( CCA--GCNGC CGCGGUAA)C 721 ACCGG-|NAG CUCUAGUGGU GGCNAGUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UAUUAAG|-- UCUCUGGUG- AAAUCCCGUA GC(UU-A)AC UAUGG-GAAU -UGCUGGAGA 841 UACUAGUA-G ACUU-GAGGU CGGGAGAGGU UAGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGNGGA CCACCUGUGG C(GAAG)GCG U-CUAACUGG AACGAACCUG 961 ACGGUGAGGG ACNAAAGCUA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU GCGGACUU|G GUGUUAGAAU GGC-(U-UU- GA)--GCCGC UCUAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCGU|C|GCC UGGGAAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCN -NNNNGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGG-C 1321 CUUGCU-UGA -CAAGCUGAG |AGGAGGUGC AUG|GCNGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AUCC-NN--U (UUUUU)--- -GGAUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)AUUGGAGG AAGGAGUGGA CGACGGUAGG UCAGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCUGAGA CAAUGGGU-U -CCGACAUU( GAAA)AGUGG AGGUAAUCCU 1621 CUAAACUUAG UCGUAGUUCG GAUUGAGGGC (UGUAACUC) GCCCUCAUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU AAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCU UU-UGCC--- -----(--UU 1801 U--)------ -GG-UUA-AA UUCGAAUCU- AGGUUU-UUU GAGGNGGGCG AAGUCGUAAC 1861 AAGG...... ....(.GAA) CCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mbb.rumina 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobrevibacter ruminantium str. M-1 ATCC 35063. ACCESSION No information KEYWORDS No information. SOURCE Methanobrevibacter ruminantium str. M-1 ATCC 35063. ORGANISM Methanobrevibacter ruminantium. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35063 ATCC 35063 = OCM 146 = DSM 1093 isolate_name= M-1 BASE COUNT 344 a 317 c 437 g 328 t 498 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCUGUU(UGA )UCCU|-GGC AGAAGCU-AC 61 UGCUAUUGGG AUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- ------AAU( 121 -UU----AG) AUU------- -----|---C GUGGCGUACG GCUCAGUAAC ACGUGGAUAA 181 CCUACCCUUA GGACUGGGAU AACCC--UG- G(-GAAA)CU GGGGCUAAUA CCGGAUA--G 241 AUAA--UUUU UCC-(UGGAA U--)-GGUA- UUUU-GUU-- UAA-AUG--- ---------- 301 (-UUUUUU-- )------|-- ---C-GCCU- --AAGGAUGG |GUCUGCGG| CAGAUUA-G- 361 GUAGUUGGUU AG(GUAAUGG )CUUACCAA| GCCUA-UGAU CUGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCN G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGNGCAG CAGGCGCG-A AACCUCCGCA AUGUGA(GAA A)UCGCNACG 541 GG|GGGAUCC CAAGUG-CC- ---------- (----)---- -------AUU CU-UAAC--G 601 GG--AUGGC| UUUUCUUAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU GG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GNNGC CGCGGUAA)C 721 ACCGG-|NAG CUCUAGUGGU AGCUACUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UGAUAAG|-- UCACUGGUG- AAAUCCUAUA GC(UU-A)AC UGUGG-GAAU -UGCUGGUGA 841 UACUGUUG-A ACUU-GAGGU CGGGNGAGGU UAGC|GGUAC UCCCAGGGUA GAG(GUGAAA 901 )UUCUGUAAU CCUGGNNGGA CCACCUGUGG C(GAAG)GCG G-CUAACUGG AACGAACCUG 961 ACGGUGAGGG ACNNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GCGGACUU|G GUGUUGGGAU GGC-(U-UU- GA)--GCNNU UCCGG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCGC|C|GCC UGGNNAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGNNNNGGA GCACCACAAC GCGUGGAGCN -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--UGUA UGAUUACCAG GCUGAUGA-C 1321 CUUGUU-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAUCAG 1441 AUUC------ (UCCG-)--- -GAAUGCUG| GGCACA-CUA AGGNNACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGNAGG UCGGUAUGCC CCGAAUCCCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUGGGA CAAUGGGU-U -CCGACGCC( GAAA)GGCGA AGGCAAUCUU 1621 UUAAACCUAG UCGUAGUUCG GAUUGAGGGC (UGUAACUC) GCCCUCAUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC AAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACA CCACCCAAAA AGGGCUG-GG AUGA-G-GAU AU-GGUC--- -----(--UG 1801 U--)------ -GG-UUG-UA UUCGAAUCU- CGGUUU-UUU GAGGAGGG.. .....GUAAC 1861 AAG....... ....(.GAA) CCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mpr.stadtm 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosphaera stadtmanae str. MCB-3 DSM 3091 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanosphaera stadtmanae str. MCB-3 DSM 3091 (T). ORGANISM Methanosphaera stadtmanae. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the archaea JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 3091 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59139 DSM 3091 (T) = ATCC 43021 isolate_name= MCB-3 BASE COUNT 367 a 305 c 416 g 332 t 504 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCCGUU(UGA )UCCU|-GGC GGAAGCU-AC 61 UGCUAUUGGG AUUCGAUUAA GCCAUGCAA- --GUCGAAUG ---------- ------AAC( 121 -CU----A-) GUU------- -----|---C AUGGCAUACG GCUCAGUAAC ACGUGGAUAA 181 CCUACCCUUA GGACCGGGAU AACUU--UG- G(-GAAA)CU GAAGAUAAUA CUGGAUA--U 241 UAGG--UUAU GCC-(UGGAA U--)-GGUU- UACC-UUU-- GAA-AUG--- ---------- 301 (-UAUUUUU- )------|-- ---C-GCCU- --AAGGAUAG |AUCUGCGG| CUGAUUA-G- 361 GUCGUUGGUG GG(GUAAUGG )CCCACCAA| GCCGA-UGAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGACCC(UAC G)GGGUGCAG CAGGCGCG-A AACCUCCGCA AUGUAC(GCA A)GUGCGACG 541 GG|GGGAUCC CAAGUG-UU- ---------- (----)---- -------AUU CU-UAAC--A 601 GA--AUAAC| UUUUCAUUAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU AG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCUGUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UGAUAAG|-- UCUUUGGUG- AAAGCUUGUA GC(UU-A)AC UAUAA-GAAU -UGCUGAAGA 841 UACUGUCA-G ACNU-GAAGU CGGGAGAGGU UAGA|GGUAC UACCGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-CUAACUGG AACGAUCUUG 961 ACGGUGAGUA ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGAAU GGC-(C-UC- GA)--GUUGU UCCGG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UNNNGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAG---AGAA UGAUAAUCAG GUUGAUGA-C 1321 CUUAUU-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )AGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAACAC 1441 AAUC------ (UCUG-)--- -GAUUGGUG| GGCACA-CUA GGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCAGUAUGCC CCGAAUCUCC UGGGCUACAC 1561 GCGGGCUACA AUGGCUAUGG CAAUGGGU-U -UCUGCACU( GAAA)AGUGA UGGUAAUCUC 1621 CUAAACAUAG UCUUAGUUCG GAUUGAGGGC (UGUAACUC) GCCCUCAUGA AGCUGGAAUG 1681 CGUAGUAAUC GCAUG(UCAC AAC)CGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACA CCACCCAAAA AGGGUUU-GG AUGA-G-GCC AU-AAU---U U----(--UC 1801 A--)----AA -UG-UUA-UU GUCGAAUCU- AGGUUU-UUU GAGGAGG... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.bryanti 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium bryantii str. M.o.H. DSM 863 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium bryantii str. M.o.H. DSM 863 (T). ORGANISM Methanobacterium bryantii. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the archaea JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 863 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59124 isolate_name= M.o.H. BASE COUNT 340 a 342 c 456 g 305 t 481 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCCGUU(UGA )UCCU|-GGC GGAGGCC-AC 61 UGCUUUUGGG GUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- ---AAUCAC( 121 -UU----CG) GUGGUU---- -----|---C GUGGCGAACG GCUCAGUAAC ACGUGGAUAA 181 UCUACCCUUA GGACUGGGAU AACCC--UG- G(-GAAA)CU GGGGAUAAUA CCGGAUA--G 241 UUAG--GAGU UCC-(UGGAA U--)-GGUC- UUCU-UUU-- UAA-AUGU-- ---------- 301 (--UCAG--- )------|-- --GC-GCCU- --AAGGAUGG |AUCUGCGG| CAGAUUA-G- 361 GUAGUUGGUG GG(GUAAUGG )CCCACCAA| GCCUU-UGAU CUGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCU 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGGACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUUUUGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUG AG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU GGCCAUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GCU 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCAUA GC(UU-A)AC UGUGG-GNAU -UGCUGGAGA 841 UACUAUUA-G GCUU-GAGGC CGGGAGAGGU UAGG|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG C-CUAACUGG AACGGACCUG 961 ACGGUGAGUA ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GCGGACUU|G GUGUUGGAAU GGC-(U-UC- GA)--GCUGC UCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCGC|C|GCC UGGGAAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCN -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGAA UGAUGGCCAG GUUGACGA-C 1321 CUUGCU-UGA -CAAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AUCC------ (UCCG-)--- -GGAUGCCG| GGCACA-CUA AGGNNACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCNGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCUAUGA CAAUGGGU-U -CCGACACU( GAAA)GGUGA AGGUAAUCUC 1621 CUAAACAUAG UCUUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU AAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGUUU-GG AUGA-G-GCC UC-AGUC--- -----(--GU 1801 U--)------ -GG-UUG-GG GUCGAAUCU- GGGUUC-UUU G......... .....GUAAC 1861 AAG....... ....(.GAA) CCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS sym.Metp.p 1924 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Embley,M.T., Finlay,B., Thomas,R.H. and Dyal,P. TITLE The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont JOURNAL J. Gen. Microbiol. 138, 1479-1487 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M86386 endosymbiont_of= Metopus palaeformis NB: IDENT: relative M.formic BASE COUNT 108 a 96 c 122 g 89 t 1509 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ....GCC-AC 61 UGCUAUUGGG GUCCGAUUAA GCCAUGCAA- --GUCGAACG ---------- ---AAA-UC( 121 -UU----CG) GAAUUU---- -----|---C GUGGCAAACG GCUCAGUAAC ACGUGGAUAA 181 CCUACCCUUA GGACUGGGAU AACCC--CG- G(-GAAA)CU GGGGACAAUA CCAGAUA--U 241 GUAG--AGAU UCC-(UGGAA U--)-GGUC- CUCU-AUU-- UAA-AUGU-- ---------- 301 (--UCCG--- )------|-- --AC-GCCU- --AAGGAUGG |AUCUGCGG| CAGAUUA-G- 361 GUAGUUGGUG GG(GUAAUUG )CCCACCAA| GCCUU-UGAU CUGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGA(GCA A)UCGCGACG 541 GG|GGANCCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCUGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUA GG-AAU.... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.formic2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium formicicum. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium formicicum. ORGANISM Methanobacterium formicicum. REFERENCE 1 AUTHORS Embley,T.M. and Finlay,B.J. TITLE Systematic and morphological diversity of endosymbiotic methanogens in anaerobic ciliates JOURNAL Ant. van Leeuw. 64, 261-271 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z29436|g496916 (bases 1 to 965) biol_source= Metopus striatur BASE COUNT 229 a 201 c 294 g 193 t 1007 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... GUUCGAUUAA GCCAUGCAA- --GUCGUACG ---------- -----AUCC( 121 -UUU--CGG) GGGU------ -----|---C GUGGCAUACG GCUCAGUAAC ACGUGGAUAA 181 CCUACCCUUA GGACUGGGAU AACCC--CG- G(-GAAA)CU GGGGACAAUA CCGGAUA--U 241 GUAG--AGUU GCC-(UGGAA UU-)-GGUA- CUCU-AUU-- GAA-AUGUA- ---------- 301 (--UUCG--- )------|-- -UGC-GCCU- --AAGGAUGG |AUCUGCGG| CAGAUUA-G- 361 GUAGUUGGCG GG(GUAAAUG )CCCACCAA| GCCAG-UAAU CUGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGAAACC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCUUAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU GG-AAUAAGA GCU....... .........( .......... ........). 721 ......|... .........U GGCCAUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GUU 781 UGAUAAG|-- UCUCUGGUG- AAAUCUCACG GC(UU-A)AC CGUGA-GAAU -UGCUGGAGA 841 UACUAUUA-G GCUU-GAGGC CGGGAGAGGU UAGC|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG G-CUAACUGG AACGGACCUG 961 ACGGUGAGUA ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-CC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGAA UGAUAGCCAG GUUGAUGA-C 1321 CUUGCU-UGA -CAAGCUGAG |AGGAGGUGC AUG|GC.... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.formici 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium formicicum. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium formicicum. ORGANISM Methanobacterium formicicum. REFERENCE 1 AUTHORS Lechner,K., Wich,G. and Boeck,A. TITLE The nucleotide sequence of the 16S rRNA gene and flanking regions from Methanobacterium formicicum: The phylogenetic relationship between methanogenic and halophilic archaebacteria. JOURNAL Syst. Appl. Microbiol. 6, 157-163 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M36508 BASE COUNT 348 a 355 c 472 g 301 t 448 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AG UCCGUU(UGA )UCCU|-GGC GGAGGCC-AC 61 UGCUAUUGGG UUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- -----AUCC( 121 -UU----CG) GGGU------ -----|---C GUGGCGUACG GCUCAGUAAC ACGUGGAUAA 181 CCUAACCUUA GGACUGGGAU AACCC--UG- G(-GAAA)CU GGGGAUAAUA CCGGAUA--U 241 GUAG--GGCU GCC-(UGGAA U--)-GGUU- CCCU-AUU-- GAA-AUGU-- ---------- 301 (--UCCG--- )------|-- --AC-GCCU- --AAGGAUGG |AUCUGCGG| CAGAUUA-G- 361 GUAGUUGGCG GG(GUAAAUG )CCCACCAA| GCCAG-UAAU CUGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GAA A)GUGCGACG 541 GG|GGAAACC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCUUAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUUU GG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU GGCCGUUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GCU 781 UGAUAAG|-- UCUCUGGUG- AAAUCUCACG GC(UU-A)AC CGUGA-GAAU -UGCUGGAGA 841 UACUAUUA-G GCUU-GAGGC CGGGAGAGGU UAGC|GGUAC UCCCGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCGGGAGGA CCACCUGUGG C(GAAG)GCG G-CUAACUGG AACGGGCCUG 961 ACGGUGAGUA ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-CC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGAA UGAUAGCCAG GUUGAUGA-C 1321 CUUGCU-UGA -CAAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AUCC------ (UUCG-)--- -GGAUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCUACAC 1561 GCGGGCUACA AUGGUUAGGA CAAUGGGU-U -CCGACACU( GAAA)GGUGG AGGUAAUCUC 1621 CUAAACCUGG CCUUAGUUCG GAUUGAGGGC (UGUAACUC) GCCCUCAUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU AAC)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGUUU-GG AUGA-G-GCC AU-AGUC--- -----(--UU 1801 U--)------ -GG-UUA-UG GUCGAAUCU- AGGUUC-UUU GAGGAGGGCG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.2.2.2 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.2.2.2 MB.THERMOAUTOTROPHICUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.2.2.2 MB.THERMOAUTOTROPHICUM_GROUP. ORGANISM 1.1.2.2.2 MB.THERMOAUTOTROPHICUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mb.thfoTHF 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. THF. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. THF. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: evidence for a formate-utilizing ancestor JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68711 isolate_name= THF BASE COUNT 307 a 338 c 436 g 247 t 596 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--UGCU GCC-(UGGAA U--)-GGUU- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGGUA GG(GUAACGG )CCUACCAA| GCCGA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUNG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACGGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-NGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCNGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AGCA--- -----(--UU 1801 U--)------ -GG-CUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AN........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.thfCB12 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. CB12 OCM 36. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. CB12 OCM 36. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: evidence for a formate-utilizing ancestor JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68717 OCM 36 = DSM 3664 = ATCC 43574 isolate_name= CB12 BASE COUNT 311 a 339 c 431 g 248 t 595 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--AGAU GCC-(UGGAA U--)-GGUG- CUUC-ACC-- CAA-ACACC- ---------- 301 (--UCCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGGUA GG(GUAACGG )CCUACCAA| GCCCA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUNGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUNG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACNGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCU-UGA -CAAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACU( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AGCA--- -----(--CC 1801 U--)------ -UG-UUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AA........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.thfoSF4 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. SF-4. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. SF-4. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE evidence for a formate-utilizing ancestor Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68718 isolate_name= SF-4 BASE COUNT 309 a 338 c 431 g 247 t 599 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--AGAU GCC-(UGGAA U--)-GGUG- CUUC-ACC-- CAA-ACACC- ---------- 301 (--UCCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGGUA GG(GUAACGG )CCUACCAA| GCCCA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUNGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUNG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACNGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCU-UGA -CAAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACU( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAN UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCNGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AGCA--- -----(--CC 1801 U--)------ -UG-UUG-UG GUCGNAUCU- GGGUUC-UUU GAGGAGGGCG AN........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.thfoHN4 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. HN4. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. HN4. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: evidence for a formate-utilizing ancestor JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68719 isolate_name= HN4 BASE COUNT 310 a 339 c 431 g 248 t 596 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--AGAU GCC-(UGGAA U--)-GGUG- CUUC-ACC-- CAA-ACACC- ---------- 301 (--UCCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGGUA GG(GUAACGG )CCUACCAA| GCCCA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUNG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACNGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCU-UGA -CAAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAA-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACU( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AGCA--- -----(--CC 1801 U--)------ -UG-UUG-UG GUCGNAUCU- GGGUUC-UUU GAGGAGGGCG AN........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.thformi 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. CB12 ATCC 43574. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. CB12 ATCC 43574. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43574 ATCC 43574 = DSM 3664 = OCM 36 isolate_name= CB12 BASE COUNT 325 a 362 c 463 g 269 t 505 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NG UCCGUU(UGA )UCCU|-GGC GGAGGCU-AC 61 UGCUAUUGGG GUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- ----AGCAC( 121 -CU----CG) GUGCU----- -----|---C GUGGCGAACG GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-NAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--AGAU GCC-(UGGAA U--)-GGUG- CUUC-ACC-- NAA-ACACC- ---------- 301 (--UCCG--- )------|-- -GGU-GCCC- --AAGNAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGGUA GG(GUAACGG )CCUACCAA| GCCCA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACG 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-NNAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGNNGGA CCACCUGUGG C(GAAG)GCG U-CCAGCUGG AACGAACCUG 961 ACGGUGAGGG ACGNAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGNAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(ANNN 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCU-UGA -CAAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCNGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACU( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AGCA--- -----(--CC 1801 U--)------ -UG-UUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGC. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.wolfei 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium wolfei.. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium wolfei. ORGANISM Methanobacterium wolfei. REFERENCE 1 AUTHORS Stettler,R., Thurner,C., Stax,D., Meile,L. and Leisinger,T. TITLE Evidence for a defective prophage on the chromosome of Methanobacterium wolfei JOURNAL FEMS Microbiol. Lett. 132 (1-2), 85-89 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X89406|g1103710 BASE COUNT 224 a 239 c 318 g 189 t 954 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .).....ACG 541 GG|GGAACCC CAAGUGUCC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGGGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGNU|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-CCAGCUGG AACGAACCUG 961 ACGGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGUGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUCCGGAG GUUGAUGA-C 1321 CUUGCU-UGA -CAAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACCC----- (UUAU-)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACU( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU CAU)CGCGCG GUGAAUACGU CCCUGCUCCU .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.tautot2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoautotrophicum str. ZH3 DSM 9446. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoautotrophicum str. ZH3 DSM 9446. ORGANISM Methanobacterium thermoautotrophicum. REFERENCE 1 AUTHORS Stettler,R., Pfister,P. and Leisinger,T. TITLE Methanobacterium thermoautotrophicum Marburg Characterization of a plasmid carried by Methanobacterium thermoautotrophicum ZH3, a methanogen closely related to JOURNAL Syst. Appl. Microbiol. 17, 484-491 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 9446 Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z37156|g587488 (bases 4 to 1486) isolate_name= ZH3 BASE COUNT 337 a 371 c 488 g 287 t 441 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~AAG UCCGUU(UGA )UCCU|-GGC GGAGGCU-AC 61 UGCUAUUGGG GUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- ------AAC( 121 -CU---UGU) GUU------- -----|---C GUGGCGAACG GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGACUGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CUGGAUA--G 241 GUGA--UGCG GCC-(UGGAA U--)-GGUG- CUUC-ACC-- GAA-ACACCC ---------- 301 (--UUCG--- )------|-- GGGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGGUA GG(GUAACGG )CCUACCAA| GCCCA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACG 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCGCA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-CCAGCUGG AACGAACCUG 961 ACGGUGAGGG ACGAAAGCUA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 GACCC----- (UUUG-)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACU( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AGUA--- -----(--UU 1801 U--)------ -UG-CUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mb.tautotr 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoautotrophicum str. Marburg. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoautotrophicum str. Marburg. ORGANISM Methanobacterium thermoautotrophicum. REFERENCE 1 AUTHORS Leffers,H., Kjems,J., Ostergaard,L., Larsen,N. and Garrett,R .A. TITLE Sulphur-dependent Extreme Thermophile, an Extreme Halophile and a Thermophilic Methanogen Evolutionary Relationship Amongst Archaebacteria: A Comparative Study of 23 S Ribosomal RNAs of a JOURNAL J. Mol. Biol. 195, 43-61 (1987) STANDARD No information REFERENCE 2 AUTHORS Ostergaard,L., Larsen,N., Leffers,H., Kjems,J. and Garret,R. TITLE A Ribosomal RNA Operon and its Flanking Region from the Archaebacterium Methanobacterium thermoautotrophicum, Marburg strain: transcription Signals, Structure and Evolutionary Implications JOURNAL Syst. Appl. Microbiol. 9, 199-209 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X15364 isolate_name= Marburg BASE COUNT 336 a 371 c 488 g 286 t 443 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AG UCCGUU(UGA )UCCU|-GGC GGAGGCU-AC 61 UGCUAUUGGG GUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- ------AAC( 121 -CU---UGU) GUU------- -----|---C GUGGCGAACG GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGACUGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CUGGAUA--G 241 GUGA--UGCG GCC-(UGGAA U--)-GGUG- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- GGGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGGUA GG(GUAACGG )CCUACCAA| GCCCA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACG 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCGCA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-CCAGCUGG AACGAACCUG 961 ACGGUGAGGG ACGAAAGCUA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 GACCC----- (CUUG-)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACU( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAU UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AGUA--- -----(--UU 1801 U--)------ -UG-CUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mb.tauDEL2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoautotrophicum str. delta H [gene=rrnA gene]. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoautotrophicum str. delta H [gene=rrnA gene]. ORGANISM Methanobacterium thermoautotrophicum. REFERENCE 1 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE well-studied thermal community 16S rRNA sequences reveal uncultured inhabitants of a JOURNAL FEMS Microbiol. Rev. 75, 105-116 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X66791 operon= rrnA gene isolate_name= delta H BASE COUNT 116 a 127 c 172 g 91 t 1418 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... ).......A| GCNNA-UCAU CGGHACGGG| UUGU(GANA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCH 481 AGG-CC(UAC G)GG-NGCAG CAGGCGCG-A AAMCUCCGCA AUNHWC(GCA A)GUGCGACG 541 GG|GGAACCC CAAGUG-CH- ---------- (----)---- -------ACU CU-UANN--G 601 GG--GUGGC| UUUUCAGNAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG........ .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......GGW CCACCUGUGG C(GAAG)GCG U-CCANCUNG AACGANNCUG 961 ACGGUGAGGG ACNAAAGCCA GGRGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 NGUNAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCNAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCNC|C|GCC UGGGAAGUAC GG..(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .GGGCWACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUMGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC UAU)CGCGCG GUGAAUACGU CCCUGCUCC. .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.tauDEL3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoautotrophicum str. delta H. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoautotrophicum str. delta H. ORGANISM Methanobacterium thermoautotrophicum. REFERENCE 1 AUTHORS Gilbert,K., Harrison,D., Hoang,L., Keagle,P., Lumm,W., Pothier,B., Qiu,D., Spadafora,R., Vicare,R., Wang,Y., Wierzbowski,J., Gibson,R., Jiwani,N., Caruso,A., Bush,D., Safer,H., Patwell,D., Prabhakar,S., McDougall,S., Shimer,G., Goyal,A., Pietrovski,S., Church,G.M., Daniels,C.J., Mao,J.-I ., Rice,P., Nolling,J. and Reeve,J.N. Smith,D.R., Doucette-Stamm,L.A., Deloughery,C., Lee,H.-M., Dubois,J., Aldredge,T., Bashirzadeh,R., Blakely,D., Cook,R., TITLE Complete genome sequence of Methanobacterium functional analysis and comparative genomics JOURNAL J. Bacteriol. 179, 7135-7155 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AE000666 (bases 1602210 to 1603688) legacy_attribute= biovar:MTH1753 gene isolate_name= delta H BASE COUNT 338 a 376 c 482 g 283 t 445 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G UCCGUU(UGA )UCCU|-GGC GGAGGCU-AC 61 UGCUAUUGGG GUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- ------AAC( 121 -CU---UGU) GUU------- -----|---C GUGGCGAACG GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--UGCU GCC-(UGGAA U--)-GGUU- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUA GG(GUAACGG )CCUACCAA| GCCGA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACG 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-CCAGCUGG AACGAACCUG 961 ACGGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACCC----- (UUAU-)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AACA--- -----(--UU 1801 C--)------ -UG-UUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mb.tauDEL4 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoautotrophicum str. delta H. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoautotrophicum str. delta H. ORGANISM Methanobacterium thermoautotrophicum. REFERENCE 1 AUTHORS Dubois,J., Aldredge,T., Bashirzadeh,R., Blakely,D., Cook,R., Gilbert,K., Harrison,D., Hoang,L., Keagle,P., Lumm,W., Pothier,B., Qiu,D., Spadafora,R., Vicare,R., Wang,Y., Wierzbowski,J., Gibson,R., Jiwani,N., Caruso,A., Bush,D., Safer,H., Patwell,D., Prabhakar,S., McDougall,S., Shimer,G., Goyal,A., Pietrovski,S., Church,G.M., Daniels,C.J., Mao,J.-I ., Rice,P., Nolling,J. and Reeve,J.N. Smith,D.R., Doucette-Stamm,L.A., Deloughery,C., Lee,H.-M., TITLE analysis and comparative genomics Complete genome sequence of Methanobacterium functional JOURNAL J. Bacteriol. 179, 7135-7155 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AE000666 (bases 1718787 to 1720265) legacy_attribute= biovar:MTH1888 gene isolate_name= delta H BASE COUNT 338 a 375 c 481 g 285 t 445 others ORIGIN 1 .......... .......... .........U UCCGUU(UGA )UCCU|-GGC GGAGGCU-AC 61 UGCUAUUGGG GUUCGAUUAA GCCAUGCAA- --GUCGAACG ---------- ------AAC( 121 -CU---UGU) GUU------- -----|---C GUGGCGAACG GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--UGCU GCC-(UGGAA U--)-GGUU- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUA GG(GUAACGG )CCUACCAA| GCCGA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACG 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAG)GCG U-CCAGCUGG AACGAACCUG 961 ACGGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)UCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACCC----- (UUAU-)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AACA--- -----(--UU 1801 C--)------ -UG-UUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mb.thfoFF3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. FF3. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. FF3. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: evidence for a formate-utilizing ancestor JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68715 isolate_name= FF3 BASE COUNT 308 a 340 c 434 g 248 t 594 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--UGCU GCC-(UGGAA U--)-GGUU- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUA GG(GUAACGG )CCUACCAA| GCCGA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACNGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC NAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AACA--- -----(--UU 1801 C--)------ -UG-UUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AA........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.thfoFTF 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. FTF. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. FTF. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: evidence for a formate-utilizing ancestor JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68713 isolate_name= FTF BASE COUNT 307 a 340 c 434 g 248 t 595 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--UGCU GCC-(UGGAA U--)-GGUU- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUA GG(GUAACGG )CCUACCAA| GCCGA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACNGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC NAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AACA--- -----(--UU 1801 C--)------ -UG-UUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AN........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.tauDELH 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoautotrophicum str. delta H. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoautotrophicum str. delta H. ORGANISM Methanobacterium thermoautotrophicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: evidence for a formate-utilizing ancestor JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68720 isolate_name= delta H BASE COUNT 306 a 340 c 433 g 249 t 596 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCGGAUA--G 241 GUGA--UGCU GCC-(UGGAA U--)-GGUU- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUA GG(GUAACGG )CCUACCAA| GCCGA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUNG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACNGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AACA--- -----(--UU 1801 C--)------ -UG-UUG-UG GUCGNAUCU- GGGUUC-UUU GAGGAGGGCG AN........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.thfoFF1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. FF1. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. FF1. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: evidence for a formate-utilizing ancestor JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68714 isolate_name= FF1 BASE COUNT 307 a 338 c 434 g 250 t 595 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CUGGAUA--G 241 GUGA--UGCU GCC-(UGGAA U--)-GGUU- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUA GG(GUAACGG )CCUACCAA| GCCGA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUNG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACGGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCNGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AACA--- -----(--UU 1801 C--)------ -UG-UUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AN........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.thfCSM3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. CSM3. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. CSM3. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: evidence for a formate-utilizing ancestor JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68716 isolate_name= CSM3 BASE COUNT 308 a 339 c 434 g 250 t 593 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CUGGAUA--G 241 GUGA--UGCU GCC-(UGGAA U--)-GGUU- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUA GG(GUAACGG )CCUACCAA| GCCGA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUGG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACNGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AACA--- -----(--UU 1801 C--)------ -UG-UUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AA........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mb.thfZ245 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanobacterium thermoformicicum str. Z-245 DSM 3720. ACCESSION No information KEYWORDS No information. SOURCE Methanobacterium thermoformicicum str. Z-245 DSM 3720. ORGANISM Methanobacterium thermoformicicum. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: evidence for a formate-utilizing ancestor JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 3720 Sequence information (bases 1 to 1924) Corresponding GenBank entry: X68712 DSM 3720 = OCM 177 isolate_name= Z-245 BASE COUNT 308 a 339 c 433 g 250 t 594 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... ...UGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CUGGAUA--G 241 GUGA--UGCU GCC-(UGGAA U--)-GGUU- CUUC-ACC-- GAA-ACACC- ---------- 301 (--UUCG--- )------|-- -GGU-GCCC- --AAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGGUA GG(GUAACGG )CCUACCAA| GCCGA-UCAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AC(CUGAGA- CAAG)GUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCAC(GCA A)GUGCGACN 541 GG|GGAACCC CAAGUG-CC- ---------- (----)---- -------ACU CU-UAAC--G 601 GG--GUGGC| UUUUCAGAAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUUCU GG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CAG CUCAAGUGGU AGCCGCUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GUC 781 UGAUAAG|-- UCUCUGGUG- AAAUCCCACA GC(UU-A)AC UGUGG-GAAU -UGCUGGAGA 841 UACUAUCAUG ACUC-GAGGU CGGGAGAGGC UGGA|GGUAC UCCCAGGGUA GGG(GUGAAA 901 )UCCUGUAAU CCUGGGAGGA CCACCUGUNG C(GAAN)GCG U-CCAGCUGG AACGAACCUG 961 ACNGUGAGGG ACGAAAGCCA GGGGCGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACGAU GUGGACUU|G GUGUUGGGAU GGC-(U-UC- GA)--GCUGC CCCAG-UGCC 1081 GAAGG(GAAG )CUGUUAAGU CCAC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GCGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGUA UGAUGGCCAG GUUGAUGA-C 1321 CUUGCC-UGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCUUAG-U UAC-CAGCGG 1441 AACC------ (CUUAU)--- GGGUUGCCG| GGCACA-CUA AGGGGACCGC CAGU(GA-UA 1501 A)ACUGGAGG AAGGAGUGGA CGACGGUAGG UCCGUAUGCC CCGAAUCCCC UGGGCAACAC 1561 GCGGGCUACA AUGGCCUGGA CAAUGGGU-U -CCGACACC( GAAA)GGUGG AGGUAAUCCC 1621 CUAAACCAGG UCGUAGUUCG GAUCGAGGGC (UGUAACCC) GCCCUCGUGA AGCUGGAAUG 1681 CGUAGUAAUC GCGUG(UCAC UAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCAAAA AGGGCUU-GG AUGA-G-GCC AC-AACA--- -----(--UU 1801 C--)------ -UG-UUG-UG GUCGAAUCU- GGGUUC-UUU GAGGAGGGCG AA........ 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3-METH 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3 METHANOMICROBACTERIA_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3 METHANOMICROBACTERIA_AND_RELATIVES. ORGANISM 1.1.3 METHANOMICROBACTERIA_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.3.1-ME 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.1 METHANOMICROBIALES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.1 METHANOMICROBIALES. ORGANISM 1.1.3.1 METHANOMICROBIALES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.3.1.1 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.1.1 MCU.BOURGENSE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.1.1 MCU.BOURGENSE_SUBGROUP. ORGANISM 1.1.3.1.1 MCU.BOURGENSE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mpl.limico 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanoplanus limicola str. M3 DSM 2279. ACCESSION No information KEYWORDS No information. SOURCE Methanoplanus limicola str. M3 DSM 2279. ORGANISM Methanoplanus limicola. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information REFERENCE 2 AUTHORS Woese,C.R., Achenbach,L., Rouviere,P. and Mandelco,L. TITLE Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts JOURNAL Syst. Appl. Microbiol. 14, 364-371 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 2279 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59143 isolate_name= M3 BASE COUNT 361 a 337 c 454 g 295 t 477 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCGGG GUUCGAUUAA GCCAUGCGA- --GUUGAGAG ---------- ------GGU( 121 -UA----AG) ACC------- -----|---C UCGGCGGACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUAA GGUGGAGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUA CUCCAUA--G 241 GUUA--AAGG UAC-(UGGAA U--)-GUUC- UUUA-ACC-- GAA-A-GU-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --UAGGAUGG |AUCUGCGG| CCGAUUA-G- 361 GUUGUUGUUG GG(GUAGUGG )CCCAACAA| GCCUG-UAAU CGGUACGGG| UUGU(GGGA) 421 GCNA------ ---------- ----GAGCCC G|GAGAUGGA AU(CUGAGA- CACG)AUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCAG(GAA A)CUGUGAUA 541 AG|GGAACCC CGAGUG-CC- ---------- (----)---- ---------C GU-AUAU--G 601 CG----GGC| UGUCCGGAUG U--------- ------(UUA AAAC--)--- ---------- 661 ----GCAUCC GA-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CUCGAGUGGU GGCCACUUUU AUUGGGC|UU AAAGCGUUCG UAGCUU|GAA 781 UAAUAAG|-- UCUCUUGGG- AAAUCUGCAG GC(UU-A)AC CUGCA-GGCG -UUUAAGAGA 841 AACUGUUG-U UCUA-GGAAC CGGAAGAGGU GAGA|GGUAC UCCGGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCCCGGGGGA CCACCGAUGG C(GAAG)GCA U-CUCACCAG GACGGCUUCG 961 ACAGUGAGGA ACGAAAGCUG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GUGCGUUA|G GUGUGCCGGU GAC-(C-AC- GA)--GUCAC UGGNG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GUAC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA AA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--GGAA UGAUAACCAG GCUGAAGA-C 1321 UUUGUU-UGA -CCAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUUAGU)CA GGCAACGAGC GAGACCCACG |CCAACAG-U UGC-CAGCAU 1441 GUUC------ (UCCG-)--- -GAAUGAUG| GGGACA-CUG UUGGGACCGC CUCU(GC-UA 1501 A)AGAGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGUCAGGA CAAUGGGU-A -ACGGCACU( GAGA)AGUGU AGUCAAUCCC 1621 CUAAACCUGU CCCAAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUUU-GG AUGA-G-GCU GU-GGU---- -----(-UAA 1801 UU-)------ --G-CCG-CA GUCGAAUCU- AGGUUU-CGC AAGGGGGGUU AAGNNGUAAC 1861 AAG....... ....(.GAA) UCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mpl.endsym 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanoplanus endosymbiosus str. MC1 (GDVogels) DSM 3599 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanoplanus endosymbiosus str. MC1 (GDVogels) DSM 3599 (T). ORGANISM Methanoplanus endosymbiosus. REFERENCE 1 AUTHORS Embley,T.M. and Finlay,B.J. TITLE Systematic and morphological diversity of endosymbiotic methanogens in anaerobic ciliates JOURNAL Ant. van Leeuw. 64, 261-271 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 3599 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z29435|g496915 DSM 3599 (T) = OCM 102 biol_source= marine ciliate Metopus contortus isolate_name= MC1 (GDVogels) BASE COUNT 237 a 191 c 289 g 179 t 1028 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 ........GG GUUCGAUUAA GCCAUGCGA- --GUUGAGAG ---------- -------GU( 121 -UA----AG) AC-------- -----|---C UCGGCAGACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUAA GGUGGAGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUA CUCCAUA--G 241 GUUA--AAGA UAC-(UGGAA U--)-GUUC- UUUA-ACC-- GAA-A-GU-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --UAGGAUGG |AUCUGCGG| CCGAUUA-G- 361 GUUGUUGUUG GG(GUAGUGG )CCCAACAA| GCCUG-UAAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AU(CUGAGA- CACG)AUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCAG(GAA A)CUGUGAUA 541 AG|GGAACCC CGAGUG-CC- ---------- (----)---- ---------C GU-AUAU--G 601 CG----GGC| UGUCCGGAUG U--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUCC GA-AGAAAGG G......... .........( .......... ........). 721 ......|... .......... .GCCACUUUU AUUGGGC|UU AAAGCGUUCG UAGCUU|GAA 781 UAAUAAG|-- UCUCUUGGG- AAAUCUGCAG GC(UU-A)AC CUGCA-GGCG -UUUAAGAGA 841 AACUGUUG-U UCUA-GGAAC CGGAAGAGGU GAGA|GGUAC UCCGGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCCCGGGGGA CCACCGAUGG C(GAAG)GCA U-CUCACCAG GACGGCUUCG 961 ACAGUGAGGA ACGAAAGCUG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GUGCGUUA|G GUGUGCCGGU GAC-(C-AC- GA)--GUCUC CGGGG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GUAC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA MA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--GGAA UGAUAACCAG GUUGAAGA-C 1321 UUUGUU-UGA -CCAGCUGAG |AGGAGGUGC A..|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mm.mobile 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanomicrobium mobile str. BP DSM 1539. ACCESSION No information KEYWORDS No information. SOURCE Methanomicrobium mobile str. BP DSM 1539. ORGANISM Methanomicrobium mobile. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 1539 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59142 DSM 1539 = ATCC 35094 (T) isolate_name= BP BASE COUNT 369 a 334 c 444 g 297 t 480 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCGGG GUUCGAUUAA GCCAUGCGA- --GUCGAGAG ---------- ------GGU( 121 -UC----AG) ACC------- -----|---C UCGGCGGACU GCUCAGUAAC ACGUGGAUAA 181 UCUGCCCUAU GGUGGAGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUA CUCCAUA--A 241 GUCA--GGAG UAC-(UGGAA U--)-GUCU- CCUA-ACU-- GAA-A-GU-- ---------- 301 (--UGCG--- )------|-- --GC-GCCA- --UAGGAUGA |AUCUGCGG| CCGAUUA-G- 361 GUAGUUGUUG GG(GUAACGG )CCCAACAA| GCCCG-UAAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AU(CUGAGA- CACG)AUUCC 481 AGGCCC(UAC G)GNNNGCAG CAGGCGCG-A AAACUUUACA AUGCAG(GAA A)CUGUGAUA 541 AG|GGAACCC CGAGUG-CC- ---------- (----)---- ---------C GU-ACAC--G 601 CG----GGC| UGUCCCGGUG U--------- ------(UUA AAAC--)--- ---------- 661 ----ACAUCG GA-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CNN CUCGAGUGGU GACCACUUUU AUUGGGC|UU AAAGCGUUCG UAGCUU|GAU 781 UUUUAAG|-- UCUCUUGGG- AAAUCUCACG GC(UU-A)AC UGUGA-GGCG -UCUAAGAGA 841 UACUGGGA-A UCUA-GGGAC CGGGAGAGGU AAGA|GGUAC UUCAGGGGUA GAA(GUGAAA 901 )UUCUGUAAU CCUUGAGGGA CCACCGAUGG C(GAAG)GCA U-CUUACCAG AACGGCUUCG 961 ACAGUGAGGA ACGAAAGCUG GGGGAGCGAA CGGG(AUUAG AUAC)CCCGG UAGUCCCAGC 1021 CGUAAACUAU GCGCGUUA|G GUGUGCCUGU AAC-(U-AC- GA)--GUUAC CGGGG-UGCC 1081 GAAGU(GAAA )ACGUGAAAC GUGC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGG CA--GCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|GGA CAGC--GGAA UGAUAGCCGG GCUGAAGA-C 1321 CUUGCU-UGA -CCAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUUAGU)CA GGCAACGAGC GAGACCCACG |CCAACAG-U UGC-UAGCAU 1441 GUUC------ (UCCG-)--- -GAAUGAUG| AGGACA-CUG UUGGGACCGC CUCU(GC-UA 1501 A)AGAGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGUCAGGA CAAUGGGA-A -ACGGCACU( GAAA)AGUGU AGUCAAUCUC 1621 CUAAACCUGU CCCAAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA AAU)AGCGCG GUGAAUAAGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCAUCUUAGU GAGGUUU-GG AUGA-G-GCU GU-GGU---- -----(-UAA 1801 CU-)------ --G-CCA-CA GUCGAAUCU- AGGUUU-CGC AAGGAGGGUU AAGNNGUAAC 1861 AAG....... ....(.GAA) UCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mg.cariaci 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanogenium cariaci str. JR1 (T) ATCC 35093 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanogenium cariaci str. JR1 (T) ATCC 35093 (T). ORGANISM Methanogenium cariaci. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35093 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59130 ATCC 35093 (T) = OCM 155 = DSM 1497 isolate_name= JR1 (T) BASE COUNT 356 a 341 c 449 g 288 t 490 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCGGG GUUCGAUUAA GCCAUGCGA- --GUUGAGAG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C UCAGCGGACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUAA GGUGGAGAAU AACCC--CG- G(-GAAA)CU GGGNAUAAUA CUCCAUA--G 241 AUUA--GAGA UAC-(UGGAA U--)-GUUC- UUUA-AUC-- GAA-A-GU-- ---------- 301 (--UUAG--- )------|-- --GC-GCCU- --UAGGAUGG |AUCUGCGG| UCGAUUA-G- 361 GUUGUUGUUG GG(GUAACGG )CCCAACAA| GCCUG-UAAU CGAUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AU(CUGAGA- CACG)AUUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCAG(GAA A)CUGUGAUA 541 AG|GGAACCC CGAGUG-CC- ---------- (----)---- ---------C GU-AUAC--G 601 CG----GGC| UGUCCAGGUG U--------- ------(UUA AAAC--)--- ---------- 661 ----GCAUCU GA-AGAAAGG GCCGGGCN-A GACCG-NUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CNN CUCGAGUGGU GGCCACUAUU AUUGGGC|UU AAAGCGUCCG UAGCUG|GAC 781 CCUUAAG|-- UCUCUUGGG- AAAUCCGCCG GC(UU-A)AC CGACG-GNCG -UCUAAGAGA 841 UACUGGGG-G UCUA-GGGAC CGGGAGAGGU GAGA|GGUAC UCCGGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCCCGGGGGA CCACCGAUGG C(GAAG)GCA U-CUCACCAG AACGGCUCCG 961 ACAGUGAGGG ACNNAAGCUG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACUAU GCGCGUUA|G GUGUACUGGU GAC-(C-AC- GA)--GUCAC UGGGG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GUGC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA AA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--GGAA UGAUAACCGG GCUGAAGA-C 1321 UCUGUU-UGA -CCAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCAACAG-U UGC-UAGCUU 1441 GUUC------ (UCCG-)--- -GAACGANG| AGGACA-CUG UUGGGACCGC CUCU(GC-UA 1501 A)AGAGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGGCAGGA CAAUGGGU-A -UCGACACC( GAAA)GGUGA AGGCAAUCUC 1621 UUAAACCUGU CCUAAGUUCG GAUUGUGGGC (UGUAACUC) GCCCACAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUGCGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCAUCCGAGU GAGGUCU-GG AUGA-G-CCU GU-GGU---- -----(--UU 1801 UU-)------ --G-CCG-CA GUCGAAUCU- AGGUUU-CGC AAGGAGGG.. .....GUAAC 1861 AAG....... ....(.GAA) UCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mg.organop 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanogenium organophilum str. CV (T) DSM 3596 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanogenium organophilum str. CV (T) DSM 3596 (T). ORGANISM Methanogenium organophilum. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 3596 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59131 DSM 3596 (T) = OCM 72 isolate_name= CV (T) BASE COUNT 340 a 332 c 445 g 280 t 527 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCGGG GUUCGAUUAA GCCAUGCGA- --GUUGAGAG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C UCAGCGGACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUAA GGUGGAGAAU AACCC--CG- G(-GAAA)CU GGGGAUAAUA CUCCAUA--G 241 AUUA--GAGA UAC-(UGGAA U--)-GUUC- UCUA-GUC-- GAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --UAGGAUGG |AUCUGCGG| UCGAUUA-G- 361 GUUGUUGUUG GG(GUAACGG )CCCAACAA| GCCUG-UAAU CGAUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA AU(CUGAGA- CACG)AUUCC 481 AGGNCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCAG(GAA A)CUGUGAUA 541 AG|GGAACCC CGAGUG-CC- ---------- (----)---- ---------C GU-AUAC--G 601 CG----GGC| UGUCCAGGUG U--------- ------(UUA AAAC--)--- ---------- 661 ----GCAUCU GA-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGN CUCGAGUGGU GGCCACUUUU AUUGGGC|UU AAAGCGUCCG UAGCUG|GAC 781 CCUUAAG|-- UCUCUUGGG- AAAUCUGCCG GC(UU-A)AC CGGCN-GGCG -UCUAAGAGA 841 UACUGGGG-G UCUA-GGGAC CGGGAGAGGU GAGA|GGUAC UCNGGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCCCGGGGGA CCACCUAUGG C(GAAG)GCA U-CUCACCAG AACGGCUCCG 961 ACAGUGAGGG ACGAAAGCUG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACUAU GCGCGUUA|G GUGUACUGGU GAC-(C-AC- GA)--GUCAC UGGGG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GUGC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGC...... .....(.... 1201 AACG)CCGGA AA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|GGA CAGA--CAUA UGAUAGCCGG GCUGAAGA-C 1321 UCUGCU-UGA -UGAUCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUUAGU)CA GGCAACGAGC GAGACCCACG |CCAACAG-U UGC-UAGCUU 1441 GUUC------ (UCCG-)--- -GAACGAUG| AGGACA-CUG UUGGGACCGC CUCU(GC-UA 1501 A)AGAGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGGCAGGA CAAUGGGU-A -UCGACACC( GAAA)GGUGA AGGCAAUCUC 1621 UUAAACCUGU CCCAAGUUCG GAUUGUGGGC (UGUAACUC) GCCCACAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUGCGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCAUCCGAGU GAGGUUU-GG AUGA-G-CCU GU-GGU---- -----(--UU 1801 UU-)------ --G-CCG-CA GUCGAAUCU- AGGUUU-CGC AAGGAGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mcu.marisn 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanoculleus marisnigri str. JR1 (T) ATCC 35101 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanoculleus marisnigri str. JR1 (T) ATCC 35101 (T). ORGANISM Methanoculleus marisnigri. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35101 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59134 ATCC 35101 (T) = OCM 56 = DSM 1498 isolate_name= JR1 (T) BASE COUNT 350 a 344 c 459 g 287 t 484 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCGGG GUUCGAUUAA GCCAUGCGA- --GUCGAGAG ---------- -------GG( 121 -UU----CG) CC-------- -----|---C UCGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUAA GGAAGGGGAU AACCC--CG- G(-GAAA)CU GGGAAUAAUA CCCUAUA--G 241 GUUA--CAGA UGC-(UGGAA U--)-GCUC- UGUA-ACU-- CAA-A-GU-- ---------- 301 (--UCAG--- )------|-- --GC-GCCU- --UAGGAUGG |AUCUGCGG| CCGAUUA-G- 361 GUUGUUGUUG GG(GUAACGG )CCCAACAA| GCCAG-UAAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGUUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGNCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GCA A)CCGUGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- ---------U GU-AUAU--G 601 CA----GGC| UGUCCAGGUG U--------- ------(CUA AAAC--)--- ---------- 661 ----ACACCU GA-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CNN CNCGAGUGGU GGCCACUUUU AUUGGGC|UU AAAGCGUUCG UAGCUG|GGU 781 UGUUAAG|-- UCUCUUGGG- AAAUCCGGCG GC(UC-A)AC CGUCG-GNCG -UCUAAGAGA 841 UACUGGCA-G UCUU-GGAAC CGGGAGAGGU GAGG|GGUAC UUCGGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUCGAGGGA CCACCUGUGG C(GAAG)GCG C-CUCACCAG AACGGCUUCG 961 ACAGUGAGGG ACGNAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GUGCGUUA|G GUGUAUCGAC GAC-(C-AC- GA)--GUCGU CGAGG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GUAC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC AGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGG AA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--GGAA UGAUUGCCGG GCUGAAGA-C 1321 UCUGCA-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCAACAG-U UGC-CAGCAU 1441 GAUC------ (UCCG-)--- -GAUUGAUG| GGGACA-CUG UUGGGACCGC CUCU(GC-UA 1501 A)AGAGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGGCAGGA CAAUGGGU-A -UCGACACC( GAAA)GGUGG AGGCAAUCUC 1621 CUAAACCUGU CCGUAGUUCG GAUUGUGGGC (UGUAACUC) GCCCACAUGA AGCUGGAAUC 1681 UGUAGUAAUC GCGUU(UCAA AAU)AACGCG GUGAAUGUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GGGGUUU-GG AUGA-G-GCU GC-GGU---- -----(--CG 1801 UU-)------ --G-CCG-CA GUCGAAUCU- AGGUUC-CGC AAGGGGGGUU AAGNNGUAAC 1861 AAG....... ....(.GAA) UCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mcu.thermo 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanoculleus thermophilicus str. TCI DSM 3915. ACCESSION No information KEYWORDS No information. SOURCE Methanoculleus thermophilicus str. TCI DSM 3915. ORGANISM Methanoculleus thermophilicus. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 3915 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59129 DSM 3915 = OCM 71 isolate_name= TCI BASE COUNT 339 a 340 c 457 g 272 t 516 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCGGG GUUCGAUUAA GCCAUGCGA- --GUCGAGAG ---------- -------GG( 121 -UU----CG) CC-------- -----|---C UCGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUAA GGAAGGGGAU AACCU--CG- G(-GAAA)CU GAGGAUAAUA CCCUAUA--G 241 GAUA--CCGA UGC-(UGGAA U--)-GCCC- GGUA-UCC-- NAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --UAGGAUGG |AUCUGCGG| CCGAUUA-G- 361 GUCGUUGUUG GG(GUAACGG )CCCAACAA| GCCGA-UAAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGUUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GCA A)CCGUGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- ---------U GU-ACAU--G 601 CA----GGC| UGUCUGGGUG U--------- ------(CUA AAAC--)--- ---------- 661 ----ACACCU AA-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGN CUCGAGUGGU GGCNACUUUU AUUGGGC|UU AAAGCGUUCG UAGCUG|GGU 781 UGUUAAG|-- UCUCUUGGG- AAAUCUGGCA GC(UU-A)AC UGUCA-GGCG -UCUAAGAGA 841 UACUGGCA-A UCUA-GGAAC CGGGAGAGGU GAGG|GGUAC UUCGGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUCGAGGGA CCACCUGUGG C(GAAG)GCG C-CUCACCAG AACGGCUUCG 961 ACAGUGAGGG ACGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCGCGUUA|G GUGUGUCGAU GAC-(C-AC- GA)--GUCAU CGAGG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GCGC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC AGGUGGAGCC -UGCGGUUUA AUUGG(NCNN 1201 AACG)CCGGG AA--GCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|GGA CAGC--AGAA UGAUUGCCGG GCUGAAGA-C 1321 UCUGCA-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCAACAG-U UGC-CAGCAC 1441 GAUC------ (CCCG-)--- -GAUCGGUG| GGGACA-CUG UUGGGACCGC CUCU(GC-UA 1501 A)AGAGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGGCAGGA CAAUGGGU-A -UCGACGCC( GAAA)GGCGA AGGCAAUCUC 1621 CUAAACCUGU CCGUAGUUCG GAUUGUGGGC (UGUAACUC) GCCCACAUGA AGCUGGAAUC 1681 UGUAGUAAUC GCGUU(UCAA AAU)AGCGCG GUGAAUAUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GGGGUUU-GG AUGA-G-GCU GC-GGU---- -----(--CG 1801 UU-)------ --G-CCG-CA GUCGAAUCU- AGGUUC-UGC AAGGGGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mcu.bourge 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanoculleus bourgense str. MS2 (T) ATCC 43281 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanoculleus bourgense str. MS2 (T) ATCC 43281 (T). ORGANISM Methanoculleus bourgense. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43281 (T) ATCC 43281 (T) = OCM 15 = DSM 3045 isolate_name= MS2 (T) BASE COUNT 329 a 331 c 445 g 270 t 549 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCGGG GUUCGAUUAA GCCAUGCGA- --GUCGAGAG ---------- -------GG( 121 -UU----CG) CC-------- -----|---C UCGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUAG GGAAGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUA CCCUAUA--G 241 GUUA--CAGA UGC-(UGGAA U--)-GCCC- UGUA-ACC-- NAA-A-GU-- ---------- 301 (--UCCG--- )------|-- --AC-GCCN- --UAGGAUGG |AUCUGCGG| CCGAUUA-G- 361 GUUGUUGUUG GG(GUAAUGG )CCCAACAA| GCCCG-UAAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGUUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GCA A)CCGUGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- ---------U GU-AAAU--G 601 CA----GGC| UGUUCAGGUG C--------- ------(CUA AAAC--)--- ---------- 661 ----ACACCU GA-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CNCGAGUGGU GGCNGCNUUU AUUGGGC|UU AAAGCGUUCG UAGCUG|GGU 781 UGUUAAG|-- UCUCUUGGG- AAAUCUGGCG GC(UU-A)AC CGUCA-GNCG -UCUAAGGGA 841 UACUGGCA-A UCUU-GGAAC CGGGAGAGGU GAGG|GGUAC UUCGGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUCGAGGGA CNNCCUGUGG C(GAAG)GCG C-CUCACCAG AACGGCUUCG 961 ACAGUGAGGG ACNNAAGCUG GGGGAGCAAA CCGN(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACUAU GCGCGUUA|G GUGUAUCGGU GAC-(C-AC- GA)--GUUAC CGAGG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GUGC|C|GCC UGGGNAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC AGGUGGAGCC -UGC...... .....(.NNN 1201 AACG)CCGGG NA--GCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGAA UGAUUGCCGG GCUGAAGA-C 1321 UCUGCA-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC AAGACCCACG |CCNACAG-U UGC-CAGCAU 1441 GGUC------ (UCCG-)--- -GACUGAUG| GGGNCN-CUG UUGGGACCGC CUCU(GC-UA 1501 A)AGAGGAGG AAGGAAUGGG NAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGGCAGGA CAAUGGGC-A -UCGACACC( GAAA)GGUGA AGGCAAUCUC 1621 CUAAACCUGU CCUUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAAUC 1681 UGUAGUAAUC GCGNU(UCAA AAU)AACGCG GUGAAUUUGU CCCUGCUCCU UGCACACACC 1741 GCCNGNCAAA CCACCCGAGU GGGGUUU-GG AUGA-G-GUU GC-GGU---- -----(--UG 1801 UU-)------ --G-CCG-CA GUCGAAUCU- AGGUUC-CGC AAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mcu.olenta 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanoculleus olentangyi str. RC/ER (T) ATCC 35293 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanoculleus olentangyi str. RC/ER (T) ATCC 35293 (T). ORGANISM Methanoculleus olentangyi. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35293 (T) ATCC 35293 (T) = OCM 52 = DSM 2772 isolate_name= RC/ER (T) BASE COUNT 335 a 336 c 450 g 275 t 528 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCGGG GUUCGAUUAA GCCAUGCGA- --GUCGAGAG ---------- -------GG( 121 -UU---CGG) CC-------- -----|---C UCGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCNAG GGAAGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUA CCCUAUA--G 241 AUUA--CAGA UGC-(UGGAA U--)-GCCC- UGUA-AUC-- CAA-A-GU-- ---------- 301 (--UCCG--- )------|-- --AC-GCCC- --UAGGAUGG |AUCUGCGG| CCGAUUA-G- 361 GUUGUUGUUG GG(GUAAUGG )CCCAACAA| GCCCG-UAAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGUUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GCA A)CCGUGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- ---------U GU-AAAU--G 601 CA----GGC| UGUUCAGGUG C--------- ------(CUA AAAC--)--- ---------- 661 ----ACACCU GA-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CNCGAGUGGU GGCNGCUUUU AUUGGGC|UU AAAGCGUUCG UAGCUG|GGU 781 UGUUAAG|-- UCUCUUGGG- AAAUCUGGCG GC(UU-A)AC CGUCA-GGCG -UCUAAGGGA 841 UACUGGCA-A UCNU-GGAAC CGGGAGAGGU GAGG|GGUAC UUCGGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUCGAGGGA CCACCUGUGG C(GAAG)GCG C-CUCACCAG AACGGCUUCG 961 ACAGUGAGGG ACNNAAGCUG GGGNAGCAAA CCGN(AUUGG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACUAU GCGCGUUA|G GUGUAUCGGU GAC-(C-AC- GA)--GUUAC CGAGG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GUGC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC AGGUGGAGCC -UGCGGUUUA NUUGG(NNNN 1201 AACG)CCGGG AA--GCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGAA UGAUUGCCGG GCUGAAGA-C 1321 UCUGCA-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC AAGACCCACG |CCAACAG-U UGC-CAGCAU 1441 GGUC------ (UCCG-)--- -GACUGAUG| GGGACA-CUG UUGGGACCGC CUCU(GC-UN 1501 A)AGAGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGGCAGGA CAAUGGGC-A -UCGACACC( GAAA)GGUGA AGGCAAUCUC 1621 CUAAACCUGU CCUUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAAUC 1681 UGUAGUAAUC GCGNU(UCAA AAU)AACGCG GUGAAUUUGU CCCUGCUCCU UGCACACACC 1741 GCCCGNCAAA CCACCCGAGU GGGGUUU-GG AUGA-G-GUU GC-GGU---- -----(--UG 1801 UU-)------ --G-CCG-CA GUCGAAUCU- AGGUUC-CGC AAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.1.2 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.1.2 MG.TATIONIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.1.2 MG.TATIONIS_SUBGROUP. ORGANISM 1.1.3.1.2 MG.TATIONIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Msp.spbog 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanospirillum sp. str. R10. ACCESSION No information KEYWORDS No information. SOURCE Methanospirillum sp. str. R10. ORGANISM Methanospirillum sp. REFERENCE 1 AUTHORS Hales,B.A., Edwards,C., Ritchie,D.A., Hall,G., Pickup,R.W. and Saunders,J.R. TITLE Isolation and identification of Methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis JOURNAL Appl. Environ. Microbiol. 62, 668-675 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L48407|g1161042 isolate_name= R10 BASE COUNT 247 a 221 c 321 g 184 t 951 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .UUCGAUUAA GCCAUGCGA- --GUCGAGAG ---------- -------GU( 121 -GU---AAG) AC-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGACAA 181 CCUACCCUGA AGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUA CCCCAUA--G 241 ACUA--UGGA UGC-(UGGAA U--)-GCUU- UGUA-GUU-- GAA-A-GG-- ---------- 301 (--UCCG--- )------|-- --CC-GCUU- --CAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUUGUUGUUG GG(GUAACGG )CCCAACAA| GCCUG-UAAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGG-GCAC GAGGCCGG-A AAACUUUACA AUGCGA(GCA A)UCGUGAUA 541 AG|GGAACUC CGAGUG-CC- ---------- (----)---- ---------U GU-AAAA--U 601 CA----GGC| UGUCCGCCAG U--------- ------(GUA AAUA--)--- ---------- 661 ----ACUGGU GA-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CUCGAGUGGU GGCCACUAUU ACUGGGC|UU AAAGCGUUCG UAGCUG|GUC 781 UGUUAAG|-- UCUCUGGGG- AAAUCUUCCG GC(UU-A)AC CGGAA-GGCG -UCUCAGGGA 841 UACUGGCA-G ACUA-GGGAC CGGAAGAGGU GAGA|GGUAC UCCAGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUUGGGGGA CCACCUGUGG C(GAAG)GCG U-CUCACCAG AACGGCUCCG 961 ACAGUGAGGA ACGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACGAU GCGCGUUA|G GUGUAUCGGU GAC-(C-AC- GA)--GUCAC CGAGG-UGCC 1081 GAAGA(GAAA )UCGUGAAAC GCGC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUCGG(ACUC 1201 AACG)CCGGG AA--ACUCAC CGGACA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--UGAA UGAUAGUCGG GCUGAAGA-C 1321 UCUACU-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AG....... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.Plgdna 1924 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Embley,T.M. and Finlay,B.J. TITLE The use of small subunit rRNA sequences to unravel the relationships between anaerobic ciliates and their methanogen endosymbionts JOURNAL Microbiology 140, 225-235 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z29437|g496933 (bases 1 to 880) symbiont_of= Plagiopyla nasuta BASE COUNT 216 a 184 c 273 g 161 t 1090 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .....UCGGA GUUCGAUUAA GCCAUGCGA- --GUCGAGAG ---------- -------GU( 121 -GC---AAG) AC-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGACAA 181 UCUAACCUAU GGAGAGAGAU AAUCC--CG- G(-GAAA)CU GGGGCUAAUA CCUCAUA--G 241 ACUA--UGAA UGC-(UGGAA U--)-GCUU- CGUA-GUU-- CAA-A-GG-- ---------- 301 (--UCCG--- )------|-- --CC-GCCA- --UAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGUUG GG(GUAACGG )CCCAACAA| GCCUG-UAAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGAACUC CGAGUG-CC- ---------- (----)---- ---------C GU-UAAA--U 601 CG----GGC| UGUCCAUCAG U--------- ------(UUA AAAA--)--- ---------- 661 ----ACUGGU GA-AGAAAGG G......... .........( .......... ........). 721 ......|... .....GUGGU GGCCACUAUU ACUGGGC|UU AAAGCGUUCG UAGCUG|GUU 781 UGUUAAG|-- UCUCUGGGG- AAAUCUUCCG GC(UU-A)AC CGGAA-GGCG -UCUCAGGGA 841 UACUGGCA-G ACUA-GGGAC CGGAAGAGGU GAGG|GGUAC UCCAGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUUGGGGGA CCACCUGUGG C(GAAG)GCG C-CUCACCAG GACGGCUCCG 961 ACAGUGAGGG ACGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GUGCGUUA|G GUGUAUCGGU GAC-(C-AC- GA)--GUCAC CGAGG-UGCC 1081 GAAGA(GAAA )UCGUGAAAC GUAC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC AGGUGGAGCC -UGCGGUUUA AUCGG(ACUC 1201 AACG)CCGG. ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.CY_24 1924 bp RNA RNA 02-JUL-1998 DEFINITION clone CY. ACCESSION No information KEYWORDS No information. SOURCE clone CY. ORGANISM clone CY. REFERENCE 1 AUTHORS Britschgi,T.B. and Fallon,R.D. TITLE PCR-amplification of mixed 16S rDNA genes from an anaerobic, cyanide-degrading consortium JOURNAL FEMS Microbiol. Ecol. 13, 225-232 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L09056 biol_source= anaerobic waste treatment reactor BASE COUNT 129 a 126 c 145 g 95 t 1429 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .....AAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGRUUUA AUCGG(ACUC 1201 AACG)CCGGG AA--ACUCAC CAGUUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--UGAA UGAUUGUCGG GCUGAAGA-C 1321 UCUACA-CGA -CUAGCUGAG |AGGAGGCGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCAACAG-U UGC-UAGCUC 1441 GUCC------ (UCCG-)--- -GGAUGGAG| AGGACA-CUG UUGGGACCGC CUCU(GC-UA 1501 A)AGAGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAAC UGGGCURCAC 1561 GCGGGCUACA AUGGGUGGGA CAAUGGGU-A -UCGACACC( GAAA)GGUGA AGGCAAUCUC 1621 CUAAACCCAU CCUUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAAUC 1681 CGUAGUAAUC GUGUU(UCAA CAU)AGCACG GUGAAUAUGU CCCUNC-CCN NGYACACACC 1741 GCCCGU.... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mg.tationi 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanogenium tationis. ACCESSION No information KEYWORDS No information. SOURCE Methanogenium tationis. ORGANISM Methanogenium tationis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS DSM 2702 (T) = OCM 159 BASE COUNT 330 a 343 c 453 g 263 t 535 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCGGG GNUCGAUUAA GCCAUGCGA- --GUCGAGAG ---------- -------GG( 121 -GUC--AAG) CC-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGACAA 181 CCUGCCCUAA GGUGAGGGAU AACUC--CG- G(-GAAA)CU GGAGAUAAUA CCUCAUA--G 241 UUUA--CCAU CGC-(UGGAA U--)-GCCU- GGUA-AGC-- CAA-A-GG-- ---------- 301 (--UCCG--- )------|-- --CC-GCCU- --UAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGUUG GG(GUAACGG )CCNAACAA| GCCUG-UAAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCN 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCAG(GCA A)CUGUGAUA 541 AG|GGAACCC NGNGUG-CC- ---------- (----)---- ---------C GU-AUGG--A 601 CG----GGC| NGUUCAGGUG C--------- ------(UUA AAAA--)--- ---------- 661 ----CCACCU GG-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG NUCGAGUGGU GGCCNCUAUU ACUGGGC|UU AAAGCGUCCG UAGCUU|GGU 781 CGUUAAG|-- CCUCUGGGG- AAAUCUUCCG GC(UC-A)AC CGGNA-GNCG -UCUCAGGGN 841 NACUGGCG-A CCUA-GGGAU CGGGAGAGGU GAGA|GGUAC UCUGGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUCAGGGGA CCNCCUGUGG C(GAAG)GCG U-CUCACCAG AACGACUCCG 961 ACAGUGAGGG ACNNAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCGCGUUA|G GUGUAUCGGU GAC-(C-AC- GA)--GUUAC CGAGG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GCGC|C|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCN -UGCNNUUUA AUUGG(NNNN 1201 AACG)CCGGA CA--GCUCAC CGGGUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|GGA CAGC--GAUA UGAUAGUCGG GCUGAAGA-C 1321 UCUACU-UGA -UCAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC GAGACCCACG |CCAACAG-U UGC-CAGCAC 1441 GGUC------ (UCCG-)--- -GACUGGUG| GGGACA-CUG UUGGGACCGC CUCU(GC-UN 1501 A)AGAGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUACC CGGGCUACAC 1561 GCGGGCUACA AUGGACAGGA CAAUGGGU-A -UCGACACC( GAAA)GGUGA AGGCAAUCUC 1621 CUAAACCUGC CCUUAGUUCG GAUUGCGGGC (UGCAACUC) GCCCGCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA AAU)AGCGCG GUGAAUCUGU CCCUGCUCCU UGCACACACC 1741 GCCCGNCAAA CCACCCGAGU GAGGUUU-GG AUGA-G-GCU GC-GGU---- -----(--UG 1801 UU-)------ --G-CCG-UA GUCGAAUCU- AGGUUU-CGC AAGGGNG... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.1.3 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.1.3 MSP.HUNGATEI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.1.3 MSP.HUNGATEI_SUBGROUP. ORGANISM 1.1.3.1.3 MSP.HUNGATEI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.CY104 1924 bp RNA RNA 02-JUL-1998 DEFINITION clone CY. ACCESSION No information KEYWORDS No information. SOURCE clone CY. ORGANISM clone CY. REFERENCE 1 AUTHORS Britschgi,T.B. and Fallon,R.D. TITLE PCR-amplification of mixed 16S rDNA genes from an anaerobic, cyanide-degrading consortium JOURNAL FEMS Microbiol. Ecol. 13, 225-232 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L09055 biol_source= anaerobic waste treatment reactor BASE COUNT 125 a 124 c 147 g 101 t 1427 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .....AAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUCGG(ACUC 1201 AACG)CCGGG AA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--UGAA UGAUUGUCGG GCUGAAGA-C 1321 UCUACA-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUUAGU)CA GGCAACGAGC GAGACCCACG |CGAGCAG-U UGC-CAGCUU 1441 GACC------ (UUCG-)--- -GGUUGAUG| GGGACA-CUG CUCGGACCGC CUCU(GC-UA 1501 A)AGGGGAGG AAGGAAUGGA CAACGGUAGG UCAACAUGCC CCGAAUUAUC CGGGCUACAY 1561 GCGGGCUACG AUGGAUAGGA CAAUGGGU-U -UCUACACC( GAGA)GGUGA UGACAAUCUC 1621 CUAAACCUAU CCGAAGUUCG GAUUGCGGGU (UGUAACUC) ACCCGCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUAUGU CCCUNCCCNN NGCACACACC 1741 GCCCGU.... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Msp.hungat 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanospirillum hungatei str. JF1 DSM 864. ACCESSION No information KEYWORDS No information. SOURCE Methanospirillum hungatei str. JF1 DSM 864. ORGANISM Methanospirillum hungatei. REFERENCE 1 AUTHORS Yang,D., Kaine,B.P. and Woese,C.R. TITLE The phylogeny of archaebacteria JOURNAL Syst. Appl. Microbiol. 6, 251-256 (1985) STANDARD No information COMMENTS Organism information Culture collection: DSM 864 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M60880 isolate_name= JF1 BASE COUNT 356 a 347 c 471 g 291 t 459 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGNU(UGA )UCCU|-GCC AGAGGCC-AC 61 UGCUAUCGGG GUUUGACUAA GCCAUGCGA- --GUCGAGAG ---------- -------GU( 121 -GC---AAG) AC-------- -----|---C UCGGCGUACU GCUCAGUAAC ACGUGGACAA 181 UCUGCCCUGA AGAGGAGGAU AAUCC--CG- G(-GAAA)CU GGGGGUAAUA CUCCAUA--G 241 UUCG--UGCU GAC-(UGGAA U--)-GUUA- UGCG-AAC-- GAA-A-GA-- ---------- 301 (--UCCG--- )------|-- --UC-GCUU- --CAGGAUGA |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGUUG GG(GUAACGG )CCCAACAA| GCCUG-UCAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACC AUGCGG(GCA A)CCGUGAUA 541 AG|GAAACCC CGAGUG-CC- ---------- (----)---- ---------A GC-ACAG--G 601 CU----GGC| UGUCCACCAG U--------- ------(GUA AAUA--)--- ---------- 661 ----ACUGGU GA-AGAAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CUCGAGUGGU GGCCGCUAUU ACUGGGC|UU AAAGGGUCCG UAGCUG|GAU 781 AUACAAG|-- UCCCUUGAG- AAAUCCGCCG GC(UU-A)AC CGGUG-GGCG -UUCAGGGGA 841 AACUGUAU-U UCUA-GGGAC CGGGAGAGGU GAGA|GGUAC UGCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCCGGUGGGA CCACCUAUGG C(GAAG)GCA U-CUCACCAG AACGGGUCCG 961 ACAGUGAGGG ACGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACGAU GCGCGUUA|G GUGUGUCAGU GAC-(C-AC- GU)--GUCAC UGAGG-UGCC 1081 GAAGG(GAAA )CCGUGAAAC GCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUCGG(ACUC 1201 AACG)CCGGA AA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--UGAA UGAUAGUCGG GAUGAAGA-C 1321 UCUACU-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUUAGU)CA GGCAACGAGC GAGACCCACG |CGAGCAG-U UGC-CAGCUU 1441 GACC------ (UUCG-)--- -GGUUGAUG| GGGACA-CUG CUCGGACCGC CUCU(GC-UA 1501 A)AGGGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGACAGGA CAAUGGGU-U -UCGACACC( GAGA)GGUGA GGAUAAUCUC 1621 CUAAACCUGU CCGAAGUUCG GAUUGCGGGU (UGUAACUC) ACCCGCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUAUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUCU-UG AUGA-G-GAU GU-AUC---- -----(--AU 1801 U--)------ --G-AUA-UG UUCGAAUCU- GGGUUU-UGC AAGGGGGGUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.CY_49 1924 bp RNA RNA 02-JUL-1998 DEFINITION clone CY. ACCESSION No information KEYWORDS No information. SOURCE clone CY. ORGANISM clone CY. REFERENCE 1 AUTHORS Britschgi,T.B. and Fallon,R.D. TITLE PCR-amplification of mixed 16S rDNA genes from an anaerobic, cyanide-degrading consortium JOURNAL FEMS Microbiol. Ecol. 13, 225-232 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L09059 biol_source= anaerobic waste treatment reactor BASE COUNT 120 a 133 c 151 g 91 t 1429 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .....AAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUCGG(ACUC 1201 AACA)CCGGG AA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAAC--UGAA UGAUAGUCGG GAUGAAGA-C 1321 UCUACU-CGA -CUAGCUGAG |AGGAGGCGC AUG|GCCGUC GUCA|GUUCG C|ACU(GUGA 1381 )AGCAUCCUG (UUUAGU)CA GGCAACGAGC GAGACCCACG |CCAACAG-U UGC-CAGCUU 1441 GGCC------ (UUCG-)--- -GGCUGAUG| GGGACA-CUG UCGGGACCGC CUCU(GC-UA 1501 A)AGGGGAGG AAGGACUGGG CAACGGUAGG YCAGCAUGCC CCGAAUCAUC CGGGCUACAC 1561 GCGGGCURCA AUGGUCAGGA CAAUGGGU-N -UCGACACC( GAAA)GGUGC AGGCAAUCUC 1621 CUAAACCCGN CCGGAGUUCG GAUUGYGGGY (UGUAACUC) RCCCGCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUGCGU CCCUGCUCCU UGCACACACC 1741 GCCCGU.... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.Trmmco 1924 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Finlay,B.J., Embley,T.M. and Fenchel,T. TITLE A new polymorphic methanogen, closely related to Methanocorpusculum parvum, living in stable symbiosis within the anaerobic ciliate Trimyema sp. JOURNAL J. Gen. Microbiol. 139, 371-378 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M96976 symbiont_of= Trimyema compressa BASE COUNT 221 a 191 c 261 g 181 t 1070 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ....GUC-AU 61 UGCUAUCAGG GUUUGACUAA GCCAUGCGA- --GUCGAGAG ---------- -------GU( 121 -GU---AAG) AC-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGUUAA 181 CCUGCCCUAA GGUGGAGCAU ACUCC--CG- G(-GAAA)CU GGGGCUAAUA CUCCAUA--G 241 UGGA--UGCA UCC-(UGGAA U--)-GGUG- CAUC-CUC-- GAA-A-GA-- ---------- 301 (--UCCG--- )------|-- --UC-GCCU- --UAGGAUGG |GACUGCGU| CCGAUUA-G- 361 GUUGUUGGCG GG(GUAACGG )CCCACCAA| GCCAU-UGAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAUCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-C AAACUUUACA AUGCGA(GCA A)UCGUGAUA 541 AG|GAAACCC UGAGUG-CC- ---------- (----)---- ---------U GU-CGAU--G 601 CA----GGC| UGUUCAUAUA U--------- ------(CUA AAUC--)--- ---------- 661 ----AUAUGU GA-AGAAAGG GCA....... .........( .......... ........). 721 ......|... .........U GGCCACUAUU ACUGGGU|UU AAAGCGUCCG UAGCUG|GAC 781 UGUUAGG|-- UCCCUUGGG- AAAUCUUCAC GC(UU-A)AC GUGAA-GGCG -UCUAAGAGA 841 UACCGGCA-G UCUU-GGAAC UGGGAGAGGU AAAC|CGUAC UUCGGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUCGAGGGA CGACCUAUGG C(GAAG)GCA G-UUUACCAG AACAGCUUCG 961 ACAGUGAGGG ACGAAAGCUG GGGGAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCAGC 1021 CGUAAACAAU GUGCGUUA|G GUGUGUCGGU AAC-(C-AC- GC)--GUUAC UGAUG-CGCC 1081 GAAGA(GAAA )UCGUGAAAC GCAC|C|ACC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC AGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CGG....... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.1.4 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.1.4 MCR.PARVUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.1.4 MCR.PARVUM_SUBGROUP. ORGANISM 1.1.3.1.4 MCR.PARVUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS sym.Trmm 1924 bp RNA RNA 02-JUL-1998 DEFINITION archaeobacterial symbiont. ACCESSION No information KEYWORDS No information. SOURCE archaeobacterial symbiont. ORGANISM archaeobacterial symbiont. REFERENCE 1 AUTHORS Finlay,B.J., Embley,T.M. and Fenchel,T. TITLE Methanocorpusculum parvum, living in stable symbiosis within the anaerobic ciliate Trimyema sp. A new polymorphic methanogen, closely related to JOURNAL J. Gen. Microbiol. 139, 371-378 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z16412 symbiont_of= archaeobacterial symbiont of Trimyema sp. BASE COUNT 221 a 191 c 261 g 181 t 1070 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ....GUC-AU 61 UGCUAUCAGG GUUUGACUAA GCCAUGCGA- --GUCGAGAG ---------- -------GU( 121 -GU---AAG) AC-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGUUAA 181 CCUGCCCUAA GGUGGAGCAU ACUCC--CG- G(-GAAA)CU GGGGCUAAUA CUCCAUA--G 241 UGGA--UGCA UCC-(UGGAA U--)-GGUG- CAUC-CUC-- GAA-A-GA-- ---------- 301 (--UCCG--- )------|-- --UC-GCCU- --UAGGAUGG |GACUGCGU| CCGAUUA-G- 361 GUUGUUGGCG GG(GUAACGG )CCCACCAA| GCCAU-UGAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAUCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-C AAACUUUACA AUGCGA(GCA A)UCGUGAUA 541 AG|GAAACCC UGAGUG-CC- ---------- (----)---- ---------U GU-CGAU--G 601 CA----GGC| UGUUCAUAUA U--------- ------(CUA AAUC--)--- ---------- 661 ----AUAUGU GA-AGAAAGG GCA....... .........( .......... ........). 721 ......|... .........U GGCCACUAUU ACUGGGU|UU AAAGCGUCCG UAGCUG|GAC 781 UGUUAGG|-- UCCCUUGGG- AAAUCUUCAC GC(UU-A)AC GUGAA-GGCG -UCUAAGAGA 841 UACCGGCA-G UCUU-GGAAC UGGGAGAGGU AAAC|CGUAC UUCGGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUCGAGGGA CGACCUAUGG C(GAAG)GCA G-UUUACCAG AACAGCUUCG 961 ACAGUGAGGG ACGAAAGCUG GGGGAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCAGC 1021 CGUAAACAAU GUGCGUUA|G GUGUGUCGGU AAC-(C-AC- GC)--GUUAC UGAUG-CGCC 1081 GAAGA(GAAA )UCGUGAAAC GCAC|C|ACC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC AGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CGG....... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.Metpco 1924 bp RNA RNA 02-JUL-1998 DEFINITION archaeobacterial symbiont. ACCESSION No information KEYWORDS No information. SOURCE archaeobacterial symbiont. ORGANISM archaeobacterial symbiont. REFERENCE 1 AUTHORS Embley,T.M., Finlay,B.J. and Brown,S. TITLE RNA sequence analysis shows that the symbionts in the ciliate Metopus contortus are polymorphs of a single methanogen species JOURNAL FEMS Microbiol. Lett. 97, 57-62 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z13957 symbiont_of= archaeobacterial symbiont of Metopus contortus BASE COUNT 219 a 186 c 260 g 180 t 1079 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 ........GG GUUUGACUAA GCCAUGCGA- --GUCGAGAG ---------- -------GU( 121 -GU---AAG) AC-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGUUAA 181 CCUGCCCUAA GGUGGAGCAU ACUCC--CG- G(-GAAA)CU GGGGCUAAUC CUCCAUA--G 241 UGGA--UGUA UCC-(UGGAA U--)-GGUA- UAUC-CUC-- GAA-A-GA-- ---------- 301 (--UCCG--- )------|-- --UC-GCCU- --UAGGAUGG |GACUGCGU| CCGAUUA-G- 361 GUUGUUGGCG GG(GUAACGG )CCCACCAA| GCCAU-UGAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAUCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-C AAACUUUACA AUGCGA(GCA A)UCGUGAUA 541 AG|GAAACCC UGAGUG-CC- ---------- (----)---- ---------U GU-CGAU--G 601 CA----GGC| UGUUCAUAUA U--------- ------(CUA AAUC--)--- ---------- 661 ----AUAUGU GA-AGAAAGG GCAGGGCA-A G........( .......... ........). 721 ......|... .........N GGCCACUAUU ACUGGGU|UU AAAGCGUCCG UAGCUU|RAC 781 UGUUAGG|-- DCUCUUAGG- AAAUCUUCGC GC(UU-A)AC GUGAA-GGCG -UCUAAGAGA 841 UACCGGCA-G UCUU-GGAAC UGGGAGAGGU AAAC|CGUAC UUCGGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUCGAGGGA CGACCUAUGG C(GAAG)GCA G-UUUACCAG AACAGCUUCG 961 ACAGUGAGGG ACGAAAGCUG GGGGAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCAGC 1021 CGUAAACAAU GUGCGUUA|G GUGUGUCGGU AAC-(C-UC- GU)--GUUAC UGAUG-CGCC 1081 GAAGA(GAAA )UCGUGAAAC GCAC|C|ACC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC AGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CGG....... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.CY_46 1924 bp RNA RNA 02-JUL-1998 DEFINITION clone CY. ACCESSION No information KEYWORDS No information. SOURCE clone CY. ORGANISM clone CY. REFERENCE 1 AUTHORS Britschgi,T.B. and Fallon,R.D. TITLE PCR-amplification of mixed 16S rDNA genes from an anaerobic, cyanide-degrading consortium JOURNAL FEMS Microbiol. Ecol. 13, 225-232 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L09058 biol_source= anaerobic waste treatment reactor BASE COUNT 128 a 128 c 141 g 100 t 1427 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .....AAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC AGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA CA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--UGAA UGAUCGUCAA UCUGAAGG-U 1321 UUUACA-UGA -CUAGCUGAG |AGGAGGCGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCGACAA-U UGC-CAGCAG 1441 CAUC------ (UCCG-)--- -GAUGGCUG| GGGACA-UUG UCGGGACCGC CUCU(GC-UA 1501 A)AGGGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAY 1561 GCGGGCUACA AUGGACGGGA CAAUGGGU-A -ACAACACC( GAAA)GGUGC AGUCAAUCUC 1621 CGAACCCCGC CCUUAGUUAG GAUUGCGGGU (UGCAACUC) ACCCGCAUGA AUCUG-AAUC 1681 UGUAGUAAUC GCGUU(UCAC UAU)AGCNNN GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGU.... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mcr.labrea 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanocorpusculum labreanum str. Z ATCC 43576. ACCESSION No information KEYWORDS No information. SOURCE Methanocorpusculum labreanum str. Z ATCC 43576. ORGANISM Methanocorpusculum labreanum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43576 ATCC 43576 = DSM 4855 isolate_name= Z BASE COUNT 343 a 330 c 420 g 299 t 532 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGCC-AU 61 UGCUAUCAGG GUUUGACUAA GCCAUGCGA- --GUCGAGAG ---------- -------GU( 121 -GU---AAG) AC-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGUUAA 181 CCUGCCCUAA GGUGGAGAAU ACUCC--CG- G(-GAAA)CU GGGGCUAAUG CUCCAUA--G 241 UGGA--UAUG UCC-(UGGAA U--)-GGUA- UAUC-CUC-- GAA-A-GA-- ---------- 301 (--UCCG--- )------|-- --UC-GCCU- --UAGGAUGG |NNCUGCGU| CCGAUUA-G- 361 GUUGUUGGCG GG(GUAACGG )CCCACCAA| GCCNU-UUAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAUCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-C AAACUUUACA AUGCGA(GCA A)UCGUGAUA 541 AG|GAAACCC UGAGUG-CC- ---------- (----)---- ---------U GU-CGAU--G 601 CA----GGC| NGUUCAUAUA U--------- ------(CUA AAUC--)--- ---------- 661 ----AUAUGU GA-AGAAAGG GCAGGGCA-A GACCN-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CUG CUCGAGUGAU GGCNNCUAUU ACUGGGU|UU AAAGCGUCCG UAGCUU|GAC 781 UGUUAGG|-- UCUCUUGGG- AAAUCUUCGC GC(UC-A)AC GUGAA-GGCG -UCUAAGAGA 841 UACCGGCA-G NCUU-GGAAC UGGGAGAGGU AAAC|CGUAC UUCGGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUCGAGGGA CGACCUAUGG C(GAAG)GCA G-UUUACCAG NACAGCUUCG 961 ACAGUGAGGG ACNNAAGCUG GGGGAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCAGC 1021 CGUAAACAAU GUGCGUUA|G GUGUGUCGGU AAC-(C-AC- GU)--GUUAC UGAUG-CGCC 1081 GAAGA(GAAA )UCGUGAAAC GCAC|C|ACC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGNNA GCACCACAAC AGGUGGAGCC -UGCGGUUUA AUUGG(NNNN 1201 AACG)CCGGA CA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--UGAA UGAUUGUCAA UCUGAAGG-U 1321 UUUACA-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCGACAA-U UGC-CAGCAG 1441 CAUC------ (UCCG-)--- -GAUGGCUG| GNGACA-UUG UCGGGACCGC CUCU(GC-UN 1501 A)AGGGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGACGGGA CAAUGGGU-A -ACAACACC( GAAA)GGUGC AGUCAAUCUC 1621 CGAACCCCGC CCUUAGUUAG GAUUGCGGGU (UGCAACUC) ACCCGCAUGA AUCUGGAAUC 1681 UGUAGUAAUC GCGUU(UCAC UAU)AGCGCG GUGAAUACGU CCCUNCUCCU UGCACACACC 1741 GCCCGNCAAA CCAUCCUAGU GGGGUUU-GG AUGA-G-UCC CU-NGU---- -----(--CU 1801 UU-)------ --G-CCG-GG GUCGAAUCU- AGGUUC-CGU GAGGAGG... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mcr.parvum 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanocorpusculum parvum str. XII ATCC 43721. ACCESSION No information KEYWORDS No information. SOURCE Methanocorpusculum parvum str. XII ATCC 43721. ORGANISM Methanocorpusculum parvum. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43721 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59147 ATCC 43721 = DSM 3823 isolate_name= XII BASE COUNT 334 a 319 c 406 g 288 t 577 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGCC-AU 61 UGCUAUCAGG GUNUGACUAA GCCAUGCGA- --GUCGAGAG ---------- -------GU( 121 -GU---AAG) AC-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGUUAA 181 CCUGCCCUAA GGUGGAGAAU ACUCC--CG- G(-GAAA)CU GGGGCUAAUG CUCCAUA--G 241 UGGA--UAUG UCC-(UGGAA U--)-GGUA- UAUC-CUC-- GAA-A-GA-- ---------- 301 (--UCCG--- )------|-- --UC-GCCU- --UAGGAUGG |GACUGCGU| CCGAUUA-G- 361 GUUGUUGGCG GG(GUAACGG )CCCACCAA| GCCAU-UGAU CGGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----GAUCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCN 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-C AAACUUUACA AUGCGA(GCA A)UCGUGAUA 541 AG|GAAACCC UGAGUG-CC- ---------- (----)---- ---------U GU-CGAU--G 601 CA----GGC| NGUUCAUAUA U--------- ------(CUA AAUC--)--- ---------- 661 ----AUAUGU GA-AGAAAGG GCAGGGCA-A GACCN-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CUG CUCGAGUGAU GGCNACUAUU ACUGGGU|UU AAAGCGUCCG UAGCUU|GAC 781 UGUUAGG|-- UCUCUUGGG- AAAUCUUCAC GC(UC-A)AC GUGAA-GGCG -UCUAAGAGA 841 UACCGGCA-G UCUU-GGAAC UGGGAGAGGU AAAC|CGUAC UUCGGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUCGAGGGA CGACCUAUGG C(GAAG)GCA G-UUUACCAG AACAGCUUCG 961 ACAGUGAGGG ACGAAAGCUG GGGGAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCAGC 1021 CGUAAACAAU GUGCGUUA|G GUGUGUCGGU AAC-(C-AC- GU)--GUUAC UGAUG-CGCC 1081 GAAGA(GAAA )UCGUGAAAC GCAC|C|ACC UGGGAAGUAC GGUC(GCAA) GGCUGA.... 1141 .......... .......... .......... .......... .......... .....(.... 1201 AACG)CCGGA CA--UCUCAC CGGAUA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--UGAA UGAUUGUCAA UCUGAAGG-U 1321 UUUACA-UGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCGACAA-U UGC-CAGCAG 1441 CAUC------ (UCCG-)--- -GAUGGCUG| GGGACA-UUG UCGGGACCGC CUCU(GC-UA 1501 A)AGGGGAGG AAGGAAUGGG CAACGGUAGG UCAGCAUGCC CCGAAUUAUC CGGGCUACAC 1561 GCGGGCUACA AUGGACGGGA CAAUGGGU-A -ACAACACC( GAAA)GGUGC AGUCAAUCUC 1621 CGAACCCCGC CCUUAGUUAG GAUUGCGGGU (UGCAACUC) ACCCGCAUGA AUCUGGAAUC 1681 UGUAGUAAUC GCGUU(UCAC UAU)AGCGCG GUGAAUACGU CCCUNCUCCU UGCACACACC 1741 GCCCGUCAAA CCAUCCUAGU GGGGUUU-GG AUGA-G-UCC CU-NGU---- -----(--CU 1801 UU-)------ --G-CCG-GG GUCGAAUCU- AGGUUC-CGU GAGGAGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.2-ME 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.2 METHANOSARCINALES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.2 METHANOSARCINALES. ORGANISM 1.1.3.2 METHANOSARCINALES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.3.2.1 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.2.1 METHANOSARCINA_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.2.1 METHANOSARCINA_AND_RELATIVES. ORGANISM 1.1.3.2.1 METHANOSARCINA_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Msr.barker 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina barkeri str. 227 DSM 1538. ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina barkeri str. 227 DSM 1538. ORGANISM Methanosarcina barkeri. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information REFERENCE 2 AUTHORS Woese,C.R., Achenbach,L., Rouviere,P. and Mandelco,L. TITLE Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts JOURNAL Syst. Appl. Microbiol. 14, 364-371 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 1538 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59144 isolate_name= 227 BASE COUNT 340 a 346 c 449 g 304 t 485 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGCCUAA GCCAUGCGA- --GUCAUAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGUCUGGCAU AACCC--CG- G(-GAAA)CU GGGGAUAAUU CCGGAUA--A 241 CGCA--UAUA UGC-(UGGAA U--)-GCUU- UAUG-YGU-- AAA-AUGGA- ---------- 301 (--UUCG--- )------|-- -UCC-GCCC- --AAGNAUGG |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAAUGU )ACCUACUA| GCCUA-CAAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGNNGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGGACAC CGAGUG-CU- ---------- (----)---- -------AGC AU--CAU--A 601 UG--CUGGC| UGUCCAGGUG U--------- ------(GUA AACU--)--- ---------- 661 ----ACACCU GUUAGCAAGG GCNGGGCA-A GACCN-GUG( CCA--NNNGC CGCGGUAA)C 721 ACCGG-|NUG CCCGAGUGGU GAUCGUGAUU AUUGGGU|CU AAAGGGUCNG UAGCCG|GUU 781 UGGUCAG|-- UCCUCCGGG- AAAUCUGAUA GC(UC-A)AC UAUUA-GGCU -UUCGGGGGA 841 UACUGCCA-G ACUU-GGAAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCACCUGUGG C(GAAG)GCG U-CUUACCAG AACGGGUUCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCAGGCA UGG-(C-GC- GA)--CCGUG UCUNG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACAACAAC GGGUGGAGCC -UGCGGUUUA AUUGN(NNNN 1201 AACG)CCGGA CA--ACUCAC CGGGGA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGUCAG GCUGAAGA-C 1321 CUUACC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCN|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCCACUG-U UAC-CAGCAU 1441 AUCC------ (UCCG-)--- -GGAUGAUG| GGUACU-CUG UGGGNACCGC CGGU(GU-UA 1501 A)AUCGGAGG AAGGUGCGGG CCACGGUAGG UCAGUAUGCC CCGAAUUUCC CGGGCUACAC 1561 GCGGGCUACA AUGAAUGGGA CAAUGGGU-C -CCUCCCCU( GAAA)AGGGC UGGUAAUCUC 1621 ACAAACCCAU CCUUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GAAC--- -----(--AU 1801 C--)------ -GUGUCG-UG UUCGAACCU- GUGCUU-UGC AAGGGGGGUU AAGNNGUAAC 1861 AAG....... ....(.GAA) UCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Msr.vacuol 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina vacuolata str. Z-761. ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina vacuolata str. Z-761. ORGANISM Methanosarcina vacuolata. REFERENCE 1 AUTHORS Springer,E., Sachs,M.S., Woese,C.R. and Boone,D.R. TITLE Partial gene sequences for the A subunit of Methyl-Coenzyme M Reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae JOURNAL Int. J. Syst. Bacteriol. 45, 554-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U20150|g677894 isolate_name= Z-761 BASE COUNT 298 a 322 c 404 g 268 t 632 others ORIGIN 1 .......... .......... ........NU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGCCUAA GCCAUGCGA- --GUCAUAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG NGUCCGGCAU AACCC--CG- G(-NNAA)CU GGGNNUAAUU CCGGAUA--A 241 CGCA--CAUA UGC-(UGGAA U--)-GCUU- UAUG-CGU-- AAA-AUGGA- ---------- 301 (--UUCN--- )------|-- -UCU-GCCN- --AAGNNUGG |GNCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAAUGU )ACCUACUA| GCCUA-CAAC GGGUACGNN| NUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|NAGAUGGA UU(CUGAGA- CAUG)AAUCN 481 AGGCCC(UAC G)GGNNGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGGACAC CGAGUG-CU- ---------- (----)---- -------AGC AU--CAU--A 601 UG--CUGGC| NGUCCAGGUG U--------- ------(GUA AAAU--)--- ---------- 661 ----ACACCN NUUAGCAAGG GCCGGGCA-A GACCN-GUG( CCA--GNNNN CGCGGUAA)C 721 ACCGG-|NNN CCCGAGUGGU GAUCGUGAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GNU 781 UGGUCAG|-- UCCUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UUCGGGGNN 841 UACUGCCA-G ACUU-GGAAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CNNCCUGUGG C(GAAG)GCG U-CUUACCAG AACGNNUUCG 961 ACGGUGAGGG ACNAAAGCUG GGGGCNCGAA CCGN(AUUAG AUAC)CCGGG UAGUCCNNGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCAGGCA UGG-(C-GC- GA)--CCGUG UCUNN-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGN|N|ACC UGGGAAGUAC GGCC(GCAA) GGCU...... 1141 .......... .......... .......... .......... .......... .....(...N 1201 AACG)CCGGN CA--ACUCAC CGGGGA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGCCAG GCUGAAGA-C 1321 CUUGCC-NNA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCN|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC GAGACCCGNG |CCNNCUG-U UAC-CAGCAU 1441 GUCC------ (UCCG-)--- -GGAUGAUG| GGUNCU-CUG UGGGNACCGC CGGN(GU-UA 1501 A)AUCGGAGG NAGGUGCGGG NUACGGUAGG NCAGUAUGCC CNGAAUUUCC CGGNCUACAC 1561 GCGGGCUACA AUGAAUGGGA CAAUGGGC-C -CCUCCCCU( GAAA)AGGGC UGGUAAUCUC 1621 ACAAACCNAU CCUUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCNCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGNU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCNNNCAAA CCACCCGAGU GAGGUAU-GG GNGA-G-GGC AC-GAAC--- -----(--UC 1801 U--)------ -GUGUCG-UG UUCGAACCN- GUGCUU-UGC AAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Msr.thmoph 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina thermophila str. TM-1 DSM 1825. ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina thermophila str. TM-1 DSM 1825. ORGANISM Methanosarcina thermophila. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 1825 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59140 isolate_name= TM-1 BASE COUNT 327 a 340 c 446 g 293 t 518 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGCCUAA GCCAUGCGA- --GUCAUAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGUNNGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUA CCGGAUA--A 241 CGCA--UAUC UGC-(UGGAA U--)-GCUU- UAUG-CGU-- AAA-AUGGA- ---------- 301 (--UUUG--- )------|-- -UCU-GCCC- --AAGNAUGG |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAAUGU )ACCUACUA| GCCUA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGGACAC CGAGUG-CC- ---------- (----)---- -------AGC AU--CAU--A 601 UG--UUGGC| UGUCCAGAUG U--------- ------(GUA AAAU--)--- ---------- 661 ----ACAUCU GUUAGCAAGG GCCGGGCA-A GACCA-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GAUCGUGAUU AUUGGGU|CU AAAGGGUCNG UAGCCG|GUU 781 UGGUCAG|-- UCCUCCGGG- AAAUCUGACG GC(UC-A)AC CGUUA-GGCU -UUCGGUGGA 841 UACUGCCA-G ACUU-GGAAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGAGA CCACCUGUGG C(GAAG)GCG U-CUUACCAG AACGGGUUCG 961 ACGGUGAGGG ACNAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCAGGCA UGG-(C-GC- GA)--CCGUG UCUNG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACAACAAC GGGUGGAGCC -UGCGGUUUA AUUNN(NNNN 1201 AACG)CCGGA CA--ACUCAC CGGGGA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGCCAG GCUAAAGA-C 1321 CUUGCC-UNA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCCACUG-U UAC-CAGCAU 1441 GUCC------ (UCCG-)--- -GGACGAUG| GGUACU-CUG UGGGGACCGC CGAU(GU-UA 1501 A)AUCGGAGG AAGGUGCGGG CUACGGUAGG UCAGUAUGCC CCGAAUUUCC CGGGCUACAC 1561 GCGGGCUACA AUGAAUGGGA CAAUGGGU-C -CCUCNCCY( GARA)RGGGY UGGUAAUCUC 1621 CCAAACCCAU CCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCNGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GAAC--- -----(--UY 1801 Y--)------ -GUGUCG-UG UUCGAACCU- GUGCUU-UGC AAGGGGGGU. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Msr.sicili 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina siciliae str. T4/M (T) DSM 3028. ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina siciliae str. T4/M (T) DSM 3028. ORGANISM Methanosarcina siciliae. REFERENCE 1 AUTHORS Ni,S., Woese,C.R., Aldrich,H.C. and Boone,D.R. TITLE Transfer of Methanolobus siciliae to the genus Methanosarcina, naming it Methanosarcina siciliae, and emendation of the genus Methanosarcina JOURNAL Int. J. Syst. Bacteriol. 44, 357-359 (1994) STANDARD No information REFERENCE 2 AUTHORS Springer,E., Sachs,M.S., Woese,C.R. and Boone,D.R. TITLE Partial gene sequences for the A subunit of Methyl-Coenzyme M Reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae JOURNAL Int. J. Syst. Bacteriol. 45, 554-559 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 3028 Sequence information (bases 1 to 1924) Corresponding GenBank entry: U20153|g677897 Former RDP Sids: Mlo.sicili DSM 3028 = OCM 156 isolate_name= T4/M (T) NB: former name Methanolobus siciliae BASE COUNT 318 a 337 c 440 g 277 t 552 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGCCUAA GCCAUGCGA- --GUCAUAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGUCCGGGAU AACCC--CG- G(-NAAA)CU GGGNAUAAUA CCGGAUA--A 241 CGCA--UAUG UGC-(UGGAA U--)-GCUU- UAUG-CGU-- CAA-ACGGA- ---------- 301 (--UUCG--- )------|-- -UCU-GCCC- --AAGNNUGG |GNCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAAUGU )ACCUACUA| GCCGA-CAAC GGGUACGGG| UUGU(GAGA) 421 GCNA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCN 481 NGGCCC(UAC G)GGNNGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGGACAC CGAGUG-CC- ---------- (----)---- -------AGC AU--CAU--A 601 UG--CUGGC| NGUCCGGGUG U--------- ------(GUA AAAU--)--- ---------- 661 ----ACACCU GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--NNCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GAUCGUGAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGGUCAG|-- UCCUCCGGG- AAAUCUGAUA GC(UC-A)AC UAUUA-GGCU -UUCGGGGNN 841 UACUGCCA-G ACUU-GGAAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCNCCUGUGG C(GAAG)GCG U-CUUACCAG AACGGNUUCG 961 ACGGUGAGGG ACNAAAGCUG GGGGCNCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCNGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCAGGCA UGG-(C-GC- GA)--CCGUG UCUGN-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACAACA.. .......... ....GGNUUA AUUGG(NNNN 1201 AACG)CCGGA CA--ACUCAC CGGGGA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGCCAG GCUGAAGA-C 1321 CUUGCC-UNA -AUCGCNGAG |AGGAGGUGC AUG|GCCGUC GCCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC GAGACCCGUG |CCNACUG-U UAC-CAGCAU 1441 GUCC------ (UCCG-)--- -GGACGAUG| GGUACU-CUG UGGGGACCGC CGGU(GU-UA 1501 A)AUCGGAGG AAGGUGCGGG NCACGGUAGG UCAGUAUGCC CCGAAUUUCC CGGGCUACAC 1561 GCGGGCUACA AUGAAUGGGA CAAUGGGU-C -CCUUCCCC( GAAA)GGGGG UGGUAAUCUC 1621 ACAAACCCAU CCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCNCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGNU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCNGNCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GGAC--- -----(--UC 1801 A--)------ -GUGCCG-UG UUCGAACCN- NAAUUU-UGC AAGGGNG... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Msr.acetiv 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina acetivorans str. C2A (T) DSM 2834 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina acetivorans str. C2A (T) DSM 2834 (T). ORGANISM Methanosarcina acetivorans. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 2834 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59137 DSM 2834 (T) = ATCC 35395 isolate_name= C2A (T) NB: according to ATCC the name is acetivorans and not acidovorans BASE COUNT 328 a 350 c 449 g 284 t 513 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGCCUAA GCCAUGCGA- --GUCAUAUG ---------- ------UUC( 121 -UU---UGU) GAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGUCCGGCAU AACCC--CG- G(-GAAA)CU GGGGAUAAUA CCGGAUA--A 241 CGCA--CAUA UGC-(UGGAA U--)-GCUU- UCUG-CGU-- AAA-ACGGA- ---------- 301 (--UUCG--- )------|-- -UCU-GCCC- --AAGGAUGG |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAACGU )ACCUACUA| GCCGA-CAAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGNCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGGACAC CGAGUG-UC- ---------- (----)---- -------AGC AU--CAU--A 601 UG--CUGGC| UGUCCGGAUG U--------- ------(GUA AAAU--)--- ---------- 661 ----ACAUCU GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GAUCGUGAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGGUCAG|-- UCCUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UUCGGGGGA 841 UACUGCCA-G ACUU-GGAAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCACCUGUGG C(GAAG)GCG U-CUUACCAG AACGGGUUCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCAGGCA UGG-(C-GC- GA)--CCGUG UCUGG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACAACAAC GGGUGGAGCC -UGCGGUNNA A....(.... 1201 AACG)CCGGA CA--ACUCAC CGGGGA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGCCAG GCCGAAGA-C 1321 CUUGCC-UNA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCNACUG-U UAC-CAGCAU 1441 GUCC------ (UCCG-)--- -GGACGAUG| GGUACU-CUG UGGGGACCGC CGGU(NU-UA 1501 A)AUCGGAGG AAGGUGCGGG CCACGGUAGG UCAGUAUGCC CCGAAUUUCC CGGGCUACAC 1561 GCGGGCUACA AUGAAUGGGA CAAUGGGU-C -CCUCCCCU( GAAA)AGGGC UGGUAAUCUC 1621 ACAAACCCAU CCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCUUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GGAC--- -----(--UU 1801 C--)------ -GUGCCG-UG UUCGAACCU- NAAUUU-UGC AAGGGGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Msr.mazei3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina mazei str. C16 ATCC 43340. ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina mazei str. C16 ATCC 43340. ORGANISM Methanosarcina mazei. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43340 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59138 Former RDP Sids: Msr.frisia ATCC 43340 = OCM 98 = DSM 3318 isolate_name= C16 NB: former name Methanosarcina frisia BASE COUNT 325 a 344 c 435 g 280 t 540 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGCCUAA GCCAUGCGA- --GUCAUAUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGACCGGCAU AACCC--CG- G(-GAAA)CU GGGNAUAAUU CCGGAUA--A 241 CGCA--UAUU UGC-(UGGAA U--)-GCUU- UAUG-CGU-- CAA-AAGGA- ---------- 301 (--UUCG--- )------|-- -UCU-GCCC- --AAGNAUGG |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAAUGU )ACCUACUA| GCCAG-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGNCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGGACAC CGAGUG-CC- ---------- (----)---- -------AGC AU--CAU--A 601 UG--CUGGC| CGUCCGGAUG U--------- ------(GUA AAAU--)--- ---------- 661 ----ACAUCC AUUAGCAAGG GCCGGGCA-A GACCN-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CNG CCCGAGUGGU GAUCGUGAUU AUUGGGU|CU AAAGGGUCCG UAGCCN|GUU 781 UGGUCAG|-- UCCUCCGGG- AAAUCUGAUA GC(UC-A)AC UAUUA-GGCU -UUCGGGGNA 841 UACUGCCA-G ACUU-GGAAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUNGGA CCACCUGUGG C(GAAG)GCG U-CUUACCAG AACGGGUUCG 961 ACGGUGAGNG ACNAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCAGGCA UGG-(C-GC- GA)--CCGUG UCUNG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUNAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACAACANC GGGUGGAGC. .......... .....(.... 1201 AACG)CCGGA CA--ACUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGCCAA GCUGAAGA-C 1321 UUUGCC-UNA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCN|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCNACUG-U UAC-CAGCAU 1441 GUCC------ (UCCG-)--- -GGACGAUG| GGUACU-CUG UGGGNACCGC CGAU(GU-UA 1501 A)AUCGGAGG AAGGUGCGGG NCACGGUAGG UCAGUAUGCC CNNAAUCUCC CGGGCUACAC 1561 GCGGGCUACA AUGGAUGGGA CAAUGGGU-C -CCUCCCCU( GAAA)AGGGC UGGUAAUCUC 1621 ACAAACCCAU UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GGAC--- -----(--UC 1801 U--)------ -GUGCCG-UG UUCGAACCN- GUGCUU-UGC AAGGGGGGU. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Msr.mazei2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina mazei str. Go1. ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina mazei str. Go1. ORGANISM Methanosarcina mazei. REFERENCE 1 AUTHORS Eggen,R.I.L., Geerling,A.C.M., De Groot,P.W.J., Ludwig,W. and De Vos,W.M. TITLE Methanogenic bacterium Go1: an acetoclastic methanogen that is closely related to Methanosarcina frisius JOURNAL Syst. Appl. Microbiol. 15, 582-586 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X69874 Former RDP Sids: Msr.frisi2 isolate_name= Go1 NB: former name Methanosarcina frisius BASE COUNT 341 a 362 c 470 g 302 t 449 others ORIGIN 1 .......... .......... ........AU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGCCUAA GCCAUGCGA- --GUCAUAUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGACCGGCAU AACCC--CG- G(-GAAA)CU GGGGAUAAUU CCGGAUA--A 241 CGCA--UAUU UGC-(UGGAA U--)-GCUU- UAUG-CGU-- CAA-AAGGA- ---------- 301 (--UUCG--- )------|-- -UCU-GCCC- --AAGGAUGG |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAAUGU )ACCUACUA| GCCAG-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGGACAC CGAGUG-CC- ---------- (----)---- -------AGC AU--CAU--A 601 UG--CUGGC| UGUCCGGAUG U--------- ------(GUA AAAU--)--- ---------- 661 ----ACAUCC GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GAUCGUGAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGGUCAG|-- UCCUCCGGG- AAAUCUGAUA GC(UC-A)AC UAUUA-GGCU -UUCGGGGGA 841 UACUGCCA-G ACUU-GGAAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCACCUGUGG C(GAAG)GCG U-CUUACCAG AACGGGUUCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCAGGCA UGG-(C-GC- GA)--CCGUG UCUGG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACAACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--ACUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGCCAA GCUGAAGA-C 1321 UUUGCC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCCACUG-U UAC-CAGCAU 1441 GUCC------ (UCCG-)--- -GGACGAUG| GGUACU-CUG UGGGGACCGC CGAU(GU-UA 1501 A)AUCGGAGG AAGGUGCGGG CCUCGGUAGG UCAGUAUGCC CCGAAUCUCC CGGGCUACAC 1561 GCGGGCUACA AUGGAUGGGA CAAUGGGU-C -CCUCCCCU( GAAA)AGGGC UGGUAAUCUC 1621 ACAAACCCAU UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GGAC--- -----(--UU 1801 C--)------ -GUGCCG-UG UUCGAACCU- GUGCUU-UGC AAGGGUGGUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U...|..... ........~~ 1921 ~~~| // LOCUS Msr.mazei1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina mazei str. S-6. ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina mazei str. S-6. ORGANISM Methanosarcina mazei. REFERENCE 1 AUTHORS Springer,E., Sachs,M.S., Woese,C.R. and Boone,D.R. TITLE Partial gene sequences for the A subunit of Methyl-Coenzyme M Reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae JOURNAL Int. J. Syst. Bacteriol. 45, 554-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U20151|g677895 Former RDP Sids: Msr.mazeii isolate_name= S-6 NB: no CCdeposit info, seq equiv=DSM 3318; ATCC 43340 (T) BASE COUNT 323 a 346 c 447 g 286 t 522 others ORIGIN 1 .......... .......... ........NU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGCCUAA GCCAUGCGA- --GUCAUAUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGACCGGCAU AACCC--CG- G(-GAAA)CU GGGNAUAAUU CCGGAUA--A 241 CGCA--UAUU UGC-(UGGAA U--)-GCUU- UAUG-CGU-- CAA-AAGGA- ---------- 301 (--UUCG--- )------|-- -UCU-GCCC- --AAGNNUGG |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAAUGU )ACCUACUA| GCCAG-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGGACAC CGAGUG-CC- ---------- (----)---- -------AGC AU--CAU--A 601 UG--CUGGC| NGUCCGGAUG U--------- ------(GUA AAAU--)--- ---------- 661 ----ACAUCC GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GAUCGUGAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGGUCAG|-- UCCUCCGGG- AAAUCUGAUA GC(UC-A)AC UAUUA-GGCU -UUCGGGGNN 841 UACUGCCA-G ACUU-GGANC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCACCUGUGG C(GAAG)GCG U-CUUACCAG AACGGGUUCG 961 ACGGUGAGGG ACNAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCNGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCAGGCA UGG-(C-GC- GA)--CCGUG UCUGN-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACAACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--ACUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGCCAA GCUGAAGA-C 1321 UUUGCC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCN|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC GAGACCCGUG |CCNACUG-U UAC-CAGCAU 1441 GUCC------ (UCCG-)--- -GGACGAUG| GGUACU-CUG UGGGGACCGC CGAU(GU-UA 1501 A)AUNGGAGG AAGGUGCGGG NCACGGUAGG UCAGUAUGCC CCGAAUCUCC CGGGCUACAC 1561 GCGGGCUACA AUGGAUGGGA CAAUGGGU-C -CCUCCCCU( GANA)AGGGC UGGUAAUCUC 1621 ACAAACCCAU UCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCNNCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GGAC--- -----(--UU 1801 C--)------ -GUGCCG-UG UUCGAACCU- GUGCUU-UGC AAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Msr.sp.WH1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina sp. str. WH1 DSM 4659. ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina sp. str. WH1 DSM 4659. ORGANISM Methanosarcina sp. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 4659 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59136 isolate_name= WH1 BASE COUNT 320 a 343 c 449 g 291 t 521 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGUCUAA GCCAUGCGA- --GUCAUAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGUCCGGCAU AACCC--CG- G(-GAAA)CU GGGGAUAAUU CCGGAUA--C 241 CGCA--UAUC UGC-(UGGAA U--)-GCUU- UAUG-CGU-- CAA-AUGGA- ---------- 301 (--UUCG--- )------|-- -UCU-GCCC- --AAGGAUGG |AUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAAUGU )ACCUACUA| GCCAA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGNCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGUGAUA 541 AG|GGGACAC CGAGNN-NN- ---------- (----)---- -------AGC AU--CAU--A 601 UG--CUGGC| UGUCCAGGUG U--------- ------(UUA AACU--)--- ---------- 661 ----ACACCU GUUA-CAAGG GCCGGGCA-A GACCG-GUG( CCA....... ..CGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GAUCGUGAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGGUCAG|-- UCCUCCGGG- AAAUCUGAUA GC(UU-A)AC UAUUA-GGCU -UUCGGGGGA 841 UACUGCCA-G GCUU-GGAAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCACCUGUGG C(GAAG)GCG U-CUUACCAG AACGGGUUCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCAGGCA UGG-(C-GC- GA)--CCGUG UCUGG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACAACAAC GGGUGGAGNC -UGCGGUUUA AUCGG(NNNN 1201 AACG)CCGGA CA--ACUCGC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGCCAA GCUGAAGA-C 1321 UUUGCC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUUAGU)CA GGCAACGAGC GAGACCCGUG |CCCACUG-U UAC-CAGCAU 1441 GUCN------ (UCCG-)--- -GGACGAUG| GGUACU-CUG UGGGGACCGC CGGU(GU-UA 1501 A)AUCGGAGG AAGGUGCGGG CCACGGUAGG UCAGUAUGCC CCGAAUCUCC CGGGCUACAC 1561 GCGGGCUACA AUGGAUGGGA CAAUGGGU-C -CCUNNCCC( GAAA)GGGGC UGGUAAUCUC 1621 ACAAACCCAU CCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCNUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GGAC--- -----(--UC 1801 U--)------ -GUGCCG-UG UUCGAACCC- -AAUUU-UGC NAGGGGGGU. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mcc.mluten 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcoides methylutens str. TMA-10 DSM 2657 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanococcoides methylutens str. TMA-10 DSM 2657 (T). ORGANISM Methanococcoides methylutens. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 2657 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59127 DSM 2657 (T) = OCM 158 = ATCC 33938 isolate_name= TMA-10 BASE COUNT 354 a 332 c 441 g 317 t 480 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU AUUCGACUAA GCCAUGCGA- --GUUAAAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUAGCGAACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUA GGUUCGGCAU AACUC--CG- G(-GAAA)CU GGAGAUAAUU CCGAAUA--A 241 ACCA--UUGA UGC-(UGGAA U--)-GCUU- UUUG-GUU-- CAA-A-GAC- ---------- 301 (--UUCG--- )------|-- -GUU-GCCU- --AAGNAUGG |AUCUGCGG| UCUAUCA-G- 361 GUAGUAGUGG GU(GUAAGGU )ACCUACUA| GCCUA-CGAC GGAUAUGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC A|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GNGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGCGAUA 541 AG|GGGAUAC CGAGUG-CC- ---------- (----)---- -------AGC AU--AUU--A 601 UG--UUGGC| UGUCCACAUG U--------- ------(GUA AACG--)--- ---------- 661 ----GCAUGU GUUAGCUAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU AAUCAUUUUU AUUGGGU|CU AAAGGGUCNG UAGCCG|GUU 781 UGAUCAG|-- UUCUUCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UCCGGGGAA 841 UACUGUCA-G ACUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACNAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GUUCGCUA|G GUGUCAGGGA CGG-(U-GC- GA)--CCGUU UCUGN-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAAC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCN -NNNNGUUUA AUUGG(ACUC 1201 AACG)CCGGA AA--ACUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAGA UGUAGGUCAA GCUAAAGA-C 1321 UUUACC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCNACUG-U UGC-CAGCAU 1441 GUUC------ (UUCG-)--- -GGAUGAUG| GGUACU-CUG UGGGNACCGC UNGU(GC-UA 1501 A)ACCAGAGG AAGGUGCGGG CUACGGUAGG UCAGUAUGCC CCGAAUCUCC CGGGCUACAC 1561 GCGGGCUACA AUGGCUGGGA CAAUGGGU-U -CCUACACC( GAAA)GGUGA UGGUAAUCUC 1621 CUAAACCCAG CUGUAGUUCG AAUCGAGGAC (UGUAACUC) GUCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GGAU--- -----(--UU 1801 U--)------ -GUGCCG-UG UUCGAACCU- AAAUUU-CGC AAGGGGGGUU AAGNNGUAAC 1861 AAG....... ....(.GAA) UCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mcc.burton 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanococcoides burtonii. ACCESSION No information KEYWORDS No information. SOURCE Methanococcoides burtonii. ORGANISM Methanococcoides burtonii. REFERENCE 1 AUTHORS Franzmann,P.D., Springer,N., Ludwig,W., Conway de Macario,E. and Rohde,M. TITLE A methanogenic archaeon from Ace Lake, Antarctica: Methanococcoides burtonii sp. nov. JOURNAL Syst. Appl. Microbiol. 15, 573-581 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X65537|g434307 BASE COUNT 356 a 345 c 457 g 314 t 452 others ORIGIN 1 .......... .......... ........AU CCYGKU(UGA )UCCY|-GSC AGAGGUU-AC 61 UGCUAUCGGU GUUCGACUAA GCCAUGCGA- --GUCAUAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGGACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUA GGUUUGGCAU AACUC--CG- G(-GAAA)CU GGAGAUAAUU CCGAAUA--G 241 GUCA--AAUA UGC-(UGGAA U--)-GCUU- UUUG-AUC-- AAA-A-GAC- ---------- 301 (--UUCG--- )------|-- -GUU-GCCU- --AAGGAUGG |AUCUGCGG| UCUAUCA-G- 361 GUUGUAGUGG GU(GUAACGU )ACCUACUA| GCCUA-CGAC GGAUAUGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC A|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAUCUUUACA AUGCGG(GAA A)CCGCGAUA 541 AG|GGGACAC CGAGUG-CC- ---------- (----)---- -------AAG CA--UUU--A 601 UG--UUGGC| UGUCCACAUG U--------- ------(GUA AACG--)--- ---------- 661 ----GCAUGU GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU AAUCACUUUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGAUCAG|-- UUCUUCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UCCGGGGAA 841 UACUGUCA-G ACUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GUUCGCUA|G GUGUCAGGGG CGG-(U-GC- GA)--CCGCU UCUGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAAC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA AA--ACUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAAA UGUAGGUCAA GCUAAAGA-C 1321 UUUACC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCCACUG-U UGC-CAGCAU 1441 GUCC------ (UUCG-)--- -GGAUGAUG| GGUACU-CUG UGGGGACCGC UGGU(GC-UA 1501 A)ACCAGAGG AAGGUGCGGG CUACGGUAGG UCAGUAUGCC CCGAAUCUCC CGGGCUACAC 1561 GCGGGCUACA AUGGUUGGGA CAAUGGGU-U -CCUACACC( GAAA)GGUGA UGGCAAUCUC 1621 CUAAACCCAA CCGUAGUUCG AAUUGAGGAC (UGUAACUC) GUCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GGAC--- -----(--UU 1801 A--)------ -GUGCCG-UG UUCGAACCU- AAAUUU-CGC AAGGGGGGUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mha.mahii 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanohalophilus mahii. ACCESSION No information KEYWORDS No information. SOURCE Methanohalophilus mahii. ORGANISM Methanohalophilus mahii. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59133 ATCC 35705 = DSM 5219 BASE COUNT 339 a 335 c 432 g 292 t 526 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGACUAA GCCAUGCUA- --GUUAAAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUAGCGGACU GCUCAGUAAC ACGUGGACAA 181 UCUGCCCUUG GGUUCAGCAU AACCC--CG- G(-GAAA)CU GGGNAUAAUU CUGAAUA--G 241 AUCA--CAYA UGC-(UGGAA U--)-GCUU- UGUG-AUU-- UAA-A-GA-- ---------- 301 (--UCCG--- )------|-- --UC-GCCU- --AANNAUGG |GUCUGCGG| CCUAUCA-G- 361 GUUGUAGUGG GU(CUAGAGU )ACCUACUA| GCCAA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUU)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCGG(GAA A)CCGCGAUA 541 AG|GGGACAC CGAGUG-CC- ---------- (----)---- -------AGC AU--ACA--A 601 UG--CUGGC| NGUCCACAUG U--------- ------(GUA AAUA--)--- ---------- 661 ----GCAUGU GAUAGCAGGG NNCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU AAUCACUAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UAAUCAG|-- UCUUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UCCGGGGGA 841 UACUGUUA-G ACUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACNAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCUGGAA UGG-(U-GC- GA)--CCGUU UCAGG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGNNNNGNA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGN(NNNN 1201 AACG)CCGGA CA--ACUCNC CNGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGUCAA GCUAAAGA-C 1321 UUUACC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCCACUG-U UGC-CAGCAU 1441 AUC------- (UUCGG)--- --GAUGAUG| GGUACU-CUG UGGGGACCGC CGAU(GC-UA 1501 A)AUCGGAGG AAGGUGCGGG CUACGGUAGG UCAGUAUGCC CCGAAUCUCC CGGGCUACAC 1561 GCGGGCUACA AUGGUUGGGA CAAUGGGC-U -CCUACACU( GAAA)AGUGA CGGUAAUCUC 1621 AUAAACCCAG CCGUAGUUCG AAUUGAGGGC (UGAAACCC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC GC-GGAC--- -----(--UU 1801 A--)------ -GUGCUG-CG UUCGAACCN- NAAUUN-CGC NAGGGGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mha.sp.SF1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanohalophilus sp. str. SF1 DSM 3243. ACCESSION No information KEYWORDS No information. SOURCE Methanohalophilus sp. str. SF1 DSM 3243. ORGANISM Methanohalophilus sp. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 3243 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59132 isolate_name= SF1 BASE COUNT 324 a 320 c 403 g 281 t 596 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NC UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGGU GUUCGACUAA GCCAUGCUA- --GUUAAAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUAGCAGACU GCUCAGUAAC ACGUGGACAA 181 UCUGCCCUUG GGUUCAGCAU AACCC--CG- G(-GAAA)CU GGGGAUAAUU CUGAAUA--G 241 CUCA--CAUA UGC-(UGGAA U--)-GCUU- UGUG-AUU-- UAA-A-GA-- ---------- 301 (--UUCC--- )------|-- --UC-GCCC- --AAGNNUGG |GUCUGCGG| CCUAUCA-G- 361 GUUGUAGUGG GU(CUAGAGU )ACCUACUA| GCCAA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAAA)AAUCC 481 AGGCCC(UAC G)GGNNNCAG CAGGCGCG-A AACCUUUACA CUGCGG(GAA A)CCGCGAUA 541 AG|GGGACA- CGAG-A-AC- ---------- (----)---- -------AGC AU--ACA--A 601 UG--CUGGC| UGUCCACAUG U--------- ------(GUA AAUA--)--- ---------- 661 ----GCNUGU GAUAGCAAGG GNCGGGCA-A GACCG-GUG( CCA--NNNNC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU AAUCACUAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UAAUCAG|-- UCUUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GUCU -CCCGGGGGA 841 UACUGUUA-G UCUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUANA UCCUAUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGNUCCG 961 ACGGUGAGGG ACUAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCUGGAA UGG-(U-GC- GA)--CCGUU UCAGG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC NGGGAAGNAC GGC.(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 AACG)CCGGA CA--ACUCNC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAUC--AACA UGUAGGUCAA GCUAAAGA-C 1321 UUUNCC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUUAGU)CA GGCAACGAGC GAGACCCGUG |CCCACUG-U UGC-CAGCAU 1441 AUCC------ (UUAG-)--- -GGAUGAUG| GGUACU-CUG UGGGNACCGC CGAU(GC-UA 1501 A)AUCGGAGG AAGGUUUGGG CUACGGUAGG UCAGUAUGCC CCGAAUCUCC UGGGCGACAC 1561 GCGGGCUACA AUGGUUGGGA CAAUGGGC-U -CCUACACU( GAAA)AGUGA CGGUAAUCUC 1621 AUAAACCCAG CCGUAGUUCG AAUUGAGGGC (UGAAACCC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCNNNCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC GC-GGAC--- -----(--UU 1801 UA-)------ -GUGCUG-CG UUCGAACCN- NAAUUU-CGC AAGGGGGGG. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mlo.oregon 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanolobus oregonensis str. WAL1 DSM 5435. ACCESSION No information KEYWORDS No information. SOURCE Methanolobus oregonensis str. WAL1 DSM 5435. ORGANISM Methanolobus oregonensis. REFERENCE 1 AUTHORS Springer,E., Sachs,M.S., Woese,C.R. and Boone,D.R. TITLE Partial gene sequences for the A subunit of Methyl-Coenzyme M Reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae JOURNAL Int. J. Syst. Bacteriol. 45, 554-559 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 5435 Sequence information (bases 1 to 1924) Corresponding GenBank entry: U20152|g677896 Former RDP Sids: Mha.oregon DSM 5435 = OCM 99 (T) legacy_attribute= description, IJSB 40:111-116 (1990) isolate_name= WAL1 NB: former name Methanohalophilus oregonensis BASE COUNT 333 a 340 c 449 g 286 t 516 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCAGU GUUCGACUAA GCCAUGCGA- --GUCAAAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGUACU GCUCAGUAAC NNGUGGAUAA 181 UCUGCCCUAA GGUCUGGCAU AACRC--CG- G(-GAAA)CU GAUGAUAAUU CCAGAUG--G 241 ACCA--UGGA UAC-(UGGAA U--)-GUUC- UGUG-GUC-- AAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --UAGGAUGA |AUCUGCGG| CCUAUCA-G- 361 GUUGUAGUGG GU(GUAACGU )ACCUACUA| GCCGA-CGAC GGGUACGGG| NUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGCGAUA 541 AG|GGGACAC UGAGUG-CC- ---------- (----)---- -------AGC AU--CUU--A 601 UG--UUGGC| UGUCCACAUG U--------- ------(AUA AAUA--)--- ---------- 661 ----GCAUGU GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GGCCACUAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGAUCAG|-- UCUUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UCCGGGGGA 841 UACUGUCA-G GCUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCUGGGA UGG-(U-GC- GA)--CCGUU UCAGG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(NNNN 1201 AACG)CCGGA AA--ACUCAC CUGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGUCAG GCUGAAGG-U 1321 CUUACC-UGA -AUCGCUGAG |AGGANGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCCACUG-U UGC-CAGCAU 1441 AUCC------ (UUCG-)--- -GGAUGAUG| GGUACU-CUG UGGGNACCGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGUGCGGG CUACGGUAGG UCAGUAUGCC CCGAAUCUCC AGGGCUACAC 1561 GCGGGCUACA AUGGACGGGA CAAUGGGC-U -CCUACCCC( GAAA)GGGGN UGGCAAUCUC 1621 ACAAACCCGG CCGUAGUUCG GAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGNCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-AGAC--- -----(--AA 1801 AG-)------ --UGCUG-UG UUCGAACCU- AAAUUU-CGC AAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mlo.taylor 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanolobus taylorii str. GS-16. ACCESSION No information KEYWORDS No information. SOURCE Methanolobus taylorii str. GS-16. ORGANISM Methanolobus taylorii. REFERENCE 1 AUTHORS Springer,E., Sachs,M.S., Woese,C.R. and Boone,D.R. TITLE Partial gene sequences for the A subunit of Methyl-Coenzyme M Reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae JOURNAL Int. J. Syst. Bacteriol. 45, 554-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U20154|g677898 isolate_name= GS-16 BASE COUNT 332 a 338 c 449 g 292 t 513 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCAGU GUUCGAUUAA GCCAUGCGA- --GUCAAAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 UCUGCCCUAA GGUCAGGCAU AACAC--CG- G(-GAAA)CU GGUGAUAAUU CCUGAUA--U 241 ACCA--UAGA UAC-(UGGAA U--)-GUUC- UGUG-GUC-- AAA-A-GU-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --UAGGAUGA |AUCUGCGG| CCUAUCA-G- 361 GUUGUAGUGG GU(GUAGUGU )ACCUACUA| GCCGA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA CUGCGG(GAA A)CCGCGAUA 541 AG|GGGACAC UGAGUG-CC- ---------- (----)---- -------AGC AU--CUU--A 601 UG--UUGGC| NGUCCGCAUG U--------- ------(AUA AAUA--)--- ---------- 661 ----GCAUGU GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU AGCCAUUAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGAUCAG|-- UCUUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UCCGGGGGA 841 UACUGUCA-G ACUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUUGUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCUGGGA UGG-(U-GC- GA)--CCGUU UCAGG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(NCNN 1201 AACG)CCGGA AA--ACUCAC CUGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGUCAG GCUGAAGG-U 1321 CUUACC-CGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGUG |CCCACUG-U UGC-CAGCAU 1441 AUCC------ (UUAG-)--- -GGAUGAUG| GGUACU-CUG UGGGNACCGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGUGCGGG CUACGGUAGG UCAGUAUGCC CCGAAUCUCC AGGGCUACAC 1561 GCGGGCUACA AUGGCCGGGA CAAUGGGU-C -CCUACCCC( GAAA)GGGGN UGGUAAUCUC 1621 AUAAACCCGG CNGUAGUUCG AAUCGAGGGC (UGUAACUC) GCCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGNCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AC-GGAC--- -----(--CA 1801 AG-)------ --UGCCG-UG CUCGAACCU- AAAUUU-CGC GGGG...... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS sym.Plgdfr 1924 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Embley,T.M. and Finlay,B.J. TITLE The use of small subunit rRNA sequences to unravel the relationships between anaerobic ciliates and their methanogen endosymbionts JOURNAL Microbiology 140, 225-235 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z29439|g496931 symbiont_of= Plagiopyla frontata BASE COUNT 231 a 208 c 304 g 208 t 973 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ...GGUC-AC 61 UGCUAUCAGU AUUCGAUUAA GCCAUGCGA- --GUCAAAUG ---------- ------UUU( 121 -UU---CGU) AAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 UCUGCCCUAA GGUUAGGUGU AACUC--CG- G(-GAAA)CU GGUGAUAAUC CCU-AUA--U 241 GCCA--UAGA CAC-(UGGAA U--)-GUUC- UGUG-GCC-- GAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --UAGGAUGA |AUCUGCGG| CCUAUCA-G- 361 GUUGUAGUGG GU(GUAGUGU )ACCUACUA| GCCGA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGCGAUA 541 AG|GGGAUAC UGAGUG-CC- ---------- (----)---- -------AGC AU--CUU--A 601 UG--UUGGC| UGUCCGCAUG U--------- ------(AUA AAUA--)--- ---------- 661 ----G..... .......... .......... .........( .......... ........). 721 ......|... .....GUGGU GGCCACUAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGAUCAG|-- UCUUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UCCGGGGGA 841 UACUGUCA-G ACUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUUGUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCUGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCUGGGA CGG-(U-GC- GA)--CCGUU UCAGG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA AA--ACUCAC CUGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGUCAG GCUGAAGG-U 1321 CUUACC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUCCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GG........ .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mlo.vulcan 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanolobus vulcani str. PL-12/M DSM 3029. ACCESSION No information KEYWORDS No information. SOURCE Methanolobus vulcani str. PL-12/M DSM 3029. ORGANISM Methanolobus vulcani. REFERENCE 1 AUTHORS Kadam,P.C. and Boone,D.R. TITLE Physiological characterization and emended description of Methanolobus vulcani JOURNAL Int. J. Syst. Bacteriol. 45, 400-402 (1995) STANDARD No information REFERENCE 2 AUTHORS Springer,E., Sachs,M.S., Woese,C.R. and Boone,D.R. TITLE Partial gene sequences for the A subunit of Methyl-Coenzyme M Reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae JOURNAL Int. J. Syst. Bacteriol. 45, 554-559 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 3029 Sequence information (bases 1 to 1924) Corresponding GenBank entry: U20155|g677899 DSM 3029 = OCM 157 (T) isolate_name= PL-12/M BASE COUNT 333 a 323 c 438 g 300 t 530 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCAGU AUUCGAUUAA GCCAUGCGA- --GUCAAAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUNA 181 UCUGCCCUAA GGUCAGGUAU AACUC--CG- G(-GAAA)CU GGUGAUAAUC CCUGAUA--A 241 AUCA--UAGA UAC-(UGGAA U--)-GUUC- UGUG-AUU-- CAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GU-GCCU- --UAGNAUGA |AUCUGCGG| UCUAUCA-G- 361 GUAGUAGUGG GU(GUAGUGU )ACCUACUA| GCCUA-CGAC GGAUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 NGGCCC(UAC G)GGNNGCAG CAGGCGCG-N AAACUUUACA AUGCGG(GNA A)CCGCGAUA 541 AG|GGGAUAC UGAGUG-CC- ---------- (----)---- -------AGC AU--AUU--A 601 UG--UUGGC| NGUCCAUAUG U--------- ------(AUA AAUA--)--- ---------- 661 ----GCAUGU GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GNCGC CGCGGUAA)C 721 ACCGG-|NGG CCCGAGUGGU GGCCACUAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGAUCAG|-- UCUUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UCUGGGGGA 841 UACUGUCA-G ACUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUUGUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCNGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCUGGGA CGG-(U-GC- GA)--CCGUU UCAGN-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(NNNN 1201 AACG)CCGGA AA--ACUCAC CUGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGUCAG GCUGAAGG-U 1321 CUUACC-UNA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC GAGACCCGUG |CCCACUG-U UGC-CAGCAU 1441 AUCC------ (UUAG-)--- -GGAUGAUG| GGUACU-CUG UGGGNACCGC CGGU(GC-UA 1501 A)ACCGGAGG AAGGUGCGGG NUACGGUAGG UCAGUAUGCC CCGAAUCUCC AGGGCUACAC 1561 GCGGGCUACA AUGGUCGGGA CAAUGGGU-C -CCUACCCC( GAAA)GGGGN UGGUAAUCUC 1621 AUAAACCCGC CCGUAGUUCG AAUUGAGGGC (UGUAACUC) GCCCNCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCNGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AU-GGA---- -----(--CU 1801 AG-)------ --UGCCG-UG UUCGAACCN- NAAUUU-CGC AAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mlo.bombay 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanolobus bombayensis str. B-1 OCM 438 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanolobus bombayensis str. B-1 OCM 438 (T). ORGANISM Methanolobus bombayensis. REFERENCE 1 AUTHORS Springer,E., Sachs,M.S., Woese,C.R. and Boone,D.R. TITLE Partial gene sequences for the A subunit of Methyl-Coenzyme M Reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae JOURNAL Int. J. Syst. Bacteriol. 45, 554-559 (1995) STANDARD No information REFERENCE 2 AUTHORS Kadam,P.C., Ranade,D.R., Mandelco,L. and Boone,D.R. TITLE Isolation and characterization of Methanolobus bombayensis sp. nov. , a methylotrophic methanogen that requires high concentrations of divalent cations JOURNAL Int. J. Syst. Bacteriol. 44, 603-607 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U20148|g677892 geog_source= Arabian Sea sediments near Bombay, India isolate_name= B-1 BASE COUNT 335 a 323 c 431 g 294 t 541 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGNGGUC-AC 61 UGCUAUCAGU AUUCGACUAA GCCAUGCGA- --GUUAAAUG ---------- ------UUU( 121 -UU---CGU) AAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUNA 181 UCUGCCCUAA GGUCAGGCAU AACUC--CG- G(-GAAA)CU GGUGAUAAUA CCUGAUA--A 241 AUCA--UAGA UAC-(UGGAA U--)-GUUC- UGUG-AUU-- CAA-A-GU-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --UAGNNUGA |AUCUGCGG| UCUAUCA-G- 361 GUAGUAGUGG GU(GUAACGU )ACCUACUA| GCCAA-CGAC GGAUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 NGGCCC(UAC G)GGNNNCAG CAGGCGCG-A AAUCUUUACA AUGCGG(GGA A)CCGCGAUA 541 AG|GGGAUAC UGAGUG-CC- ---------- (----)---- -------AGC AU--AUU--A 601 UG--UUGGC| NGUCCACCUG U--------- ------(AUA AACA--)--- ---------- 661 ----GCAGGU GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGN CGCGGUAA)C 721 ACCGG-|NGG CCCGAGUGGU GGCCACUAUU AUUGGGU|CU AAAGGGUCCG UAGCCU|GUU 781 CGAUCAG|-- UCUUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UCCGGGGGA 841 UACUGUCG-N NCUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUUGUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACNAAAGCUG GGGGCNCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCNGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCUGGGA CGG-(U-GC- GA)--CCGUU UCAGN-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|N|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAN GGGNGGAGNN -UNNGGUUUA AUUGG(NNNN 1201 AACG)CCGGN AA--ACUCAC CUGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGUCAG GCUAAAGG-U 1321 CUUACC-UNA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC GAGACCCGUG |CCCACUG-U UGC-CAGCAU 1441 AUCC------ (UUAG-)--- -GGAUGAUG| GGUACU-CUG UGGGGACCGC CGGU(GC-UA 1501 A)ACCGGAGG AAGGUGCGGG NUACGGUAGG UCAGUAUGCC CCGAAUCUCC AGGGCUACAC 1561 GCGGGCUACA AUGGACAGGA CAAUGGGC-C -CCUACCCU( GAAA)AGGGG UGGUAAUCUC 1621 AUAAACCUGC CCGUAGUUCG AAUUGAGGGC (UGCAACUC) GCCCNCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCNNNCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GUC AU-GGA---- -----(--CU 1801 AG-)------ --UGCCG-UG UUCGAACCU- AAAUUU-CGC AAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mlo.tindar 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanolobus tindarius str. Tindari 3 (T) DSM 2278 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanolobus tindarius str. Tindari 3 (T) DSM 2278 (T). ORGANISM Methanolobus tindarius. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 2278 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59135 DSM 2278 (T) = ATCC 35996 = OCM 150 isolate_name= Tindari 3 (T) BASE COUNT 339 a 323 c 433 g 297 t 532 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGGUC-AC 61 UGCUAUCAGU AUUCGACUAA GCCAUGCGA- --GUCAAAUG ---------- ------UUU( 121 -UU---CGU) AAA------- -----|---C AUGGCGUACU GCUCAGUAAC ACGUGGAUAA 181 UCUGCCCUAA GGUCAGGUAU AACUC--CG- G(-GAAA)CU GGUGAUAAUC CCUGAUA--U 241 GUCA--UAGA AAC-(UGGAA U--)-GUUC- UGUG-AUU-- AAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --UAGGAUGA |AUCUGCGG| UCUAUCA-G- 361 GUUGUAGUGG GU(GUAGAGU )ACCUACUA| GCCUA-CGAC GGAUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGNNNCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGCGAUA 541 AG|GGGAUAC UGAGUG-CC- ---------- (----)---- -------AGC AU--AUU--A 601 UG--UUGGC| UGUCCACCUG U--------- ------(AUA AACA--)--- ---------- 661 ----GCAGGU NUUAGCAAGG GCCGGGCA-A GACCN-GUG( CCA--NCCNC NGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GGCCACUAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGAUCAG|-- UCUUCCGGG- AAAUCUGACA GC(UC-A)AC UGUUA-GGCU -UCUGGGGGA 841 UACUGUCA-G ACUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCUUGUGGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUCUGGGA CGG-(U-GC- GA)--CCGUU UCAGG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUNAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGC...... .....(.... 1201 AACG)CCGGA AA--ACUCAC CUGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUAGGUCAG GCUGAAGG-U 1321 CUUACC-UNA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC GAGACCCGUG |CNAACUG-U UGC-CAGCAU 1441 AUCC------ (UUAG-)--- -GGAUGAUG| GGUACU-CUG UGGGNACCGC CGGU(GC-UA 1501 A)ACCGGAGG AAGGUGCGGG NUACGGUAGG UCAGUAUGCC CNGAAUCUCC AGGGCUACAC 1561 GCGGGCUACA AUGGCCGGGA CAAUGGGU-C -CCUACCCU( GAAA)AGGGU UGGUAAUCUC 1621 AUAAACCCGU CCGUAGUUCG AAUUGAGGGC (UGUAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA UAU)AGCGCG GUGAAUAUGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC AU-GGA---- -----(--CU 1801 AG-)------ --UGCCG-UG UUCGAACCU- AAAUUU-CGC AAGGGGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mhb.evesti 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanohalobium evestigatum str. Z-7303 DSM 3721. ACCESSION No information KEYWORDS No information. SOURCE Methanohalobium evestigatum str. Z-7303 DSM 3721. ORGANISM Methanohalobium evestigatum. REFERENCE 1 AUTHORS Springer,E., Sachs,M.S., Woese,C.R. and Boone,D.R. TITLE Partial gene sequences for the A subunit of Methyl-Coenzyme M Reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae JOURNAL Int. J. Syst. Bacteriol. 45, 554-559 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 3721 Sequence information (bases 1 to 1924) Corresponding GenBank entry: U20149|g677893 DSM 3721 = OCM 161 isolate_name= Z-7303 NB: description of Mhb.evesti published in Dokl. Akad. Nauk SSSR 293:464-469 (1987) BASE COUNT 338 a 337 c 441 g 278 t 530 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGU(UGA )UCCU|-GCC AGAGAUC-AC 61 UGCUAUCAGU GUCCGAUUAA GCCAUGCAA- --GUUAUAUG ---------- ------UUC( 121 -UU---CGU) GAA------- -----|---C AUGGCGAACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUUG GGACCGGGAU AACCC--CG- G(-NAAA)CU GGGNAUAAUA CCGGAUG--A 241 GCCA--CAGA UGC-(UGGAA G--)-GCUC- UGUG-GUU-- AAA-A-GG-- ---------- 301 (--GNACA-- )------|-- --CC-GCCC- --AAGNAUGG |AUCUGCGG| UCUAUCA-G- 361 GUGGUAGUGG GU(GUAACGU )ACCUACUA| GCCAA-UGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 NGGCCC(UAC G)GGNNNCAG CAGGCGCG-N AACCUUUACA CUGCGG(GAA A)CCGCGAUA 541 AG|GGGACAC UGAGUN-CC- ---------- (----)---- -------AGC AU--AUA--A 601 UG--CUGGC| NGUCCGUAUG U--------- ------(GUA AAAU--)--- ---------- 661 ----ACAUGC GUUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CCCGAGUGGU GAUCGCUAUU AUUGGGU|CU AAAGGGUCCG UAGCCG|GUU 781 UGAUCAG|-- UCCAUUGGG- AAAUCUGGUG GC(UU-A)AC CGUCA-GNAU -UCCAAUGNA 841 UACUGUCA-G ACUU-GGGAC CGGGAGAGGU AAGA|GGUAC UACAGGGGUA GGA(GUGAAA 901 )UCUUGUAAU CCCUGUAGGA CCACCAGUUG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGNACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCUCGCUA|G GUGUUAGGGA UGG-(U-AC- GG)--CCGUU CCUAG-UGCC 1081 GAAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGN(NNNN 1201 AACG)CCGGG AA--ACUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGUGGGUCAG GCUGAAGA-C 1321 CUUACC-UGA -AUCGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GNNAACGAGC GAGACCCGUG |CCNACUG-U UGC-CAGCAU 1441 GUUC------ (UUCG-)--- -GAACGAUG| GGUACU-CUG UGGGGACCGC UGCU(GC-UA 1501 A)AGCAGAGG AAGGUGCGGG NUACGGUAGG UCAGUAUGCC CCGANUCUCC CGGGCUACAC 1561 GCGGGCUACA AUGGUCGGGA CAAUGGGU-C -CCUACCCC( GAAA)GGGGN AGGUAAUCUC 1621 AUAAACCCGG CNGUAGUUCG GAUCGAGGAC (UGAAACCC) GUCCUCGUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCNNCAAA CCACCCGAGU GAGGUUU-GG GUGA-G-GGC AU-GAAC--C -----(--CC 1801 AA-)-----G -GUGUCA-UG CUCGAACCN- NAAUCU-CGC AAGGG..... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mha.zhilin 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanohalophilus zhilinae str. WeN5 DSM 4017. ACCESSION No information KEYWORDS No information. SOURCE Methanohalophilus zhilinae str. WeN5 DSM 4017. ORGANISM Methanohalophilus zhilinae. REFERENCE 1 AUTHORS Mathrani,I.M., Boone,D.R., Mah,R.A., Fox,G.E. and Lau,P.P. TITLE Methanohalophilus zhilinae sp. nov., an alkaliphilic, halophilic methylotrophic methanogen JOURNAL Int. J. Syst. Bacteriol. 38, 139-142 (1988) STANDARD No information COMMENTS Organism information Culture collection: DSM 4017 isolate_name= WeN5 BASE COUNT 234 a 214 c 296 g 177 t 1003 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .....GCCC- --AAGNAUGG |AUCUGCGG| CCUAUCA-G- 361 GUAGUAGUNG GU(GUAAUGU )ACCUACUA| GCCAA-UGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GAA A)CCGCGAUA 541 AG|GGGACAC CGAGUN-NC- ---------- (----)---- -------AGC AU--ACA--A 601 UN--CUNNN| NUCNCGCAUG U--------- ------(GUA AACG--)--- ---------- 661 ----GCAUGC GUUAGCAAGG GCCGGGCA-A GACCG....( .......... ........). 721 ......|... .......... .......... AUUGGGU|CU AAAGGGUCCG NAGCCG|GUU 781 UGAUCAG|-- UCCUCUGGG- AAAUCUGACA GC(UC-A)AC UNUUA-GGCU -UCNAGGGGA 841 UACUGUCA-G ACUU-GGGAC CGGGAGAGGU NAGA|GGUAC NACAGGGGUA GGA(GUNAAA 901 )UCUUGUAAU CCNNNUNGGA CCACCAGUGG C(GAAG)GCG U-CUUACCAG AACGGGUCCG 961 ANGGUGAGGG ACUAAAGCUG GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUNAACGAU GCUCGCUN|G GUGNAGGGAU GG..(.-..- ..)...CCGU UCCUG-UGCC 1081 GUAGG(GAAG )CCGUNAAGC GAGC|C|ACC UGGGAAGU.. ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 AACG)CCGGA AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA C......... UGUAGGUCAG GCUGAAGA-C 1321 CUUACC-NNA -AUAGCUGAG |AGGAGGUNC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCNUCC.. (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)..CGGAGG AAGGAACGGG NNACGGUAGG UCAGUAUGCC CCGAAUCUCC CGGGCUACAC 1561 GCGGGCUACA AUGAUNGGGA CAAUGGGC-N -CCUGCCCC( GAAA)GGGGA UGGUAAUCUC 1621 CCAAACCCNA UCGUAGUUCA GAUUGAGGAC (UGAAACUN) GUCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAU)AGCGCG GUGAAUACGU CCCU...... .......... 1741 .......AAA CCACCCGAGU GAGGUAU-GG GUGA-G-GGC NA-GAA---- -----(-NNU 1801 AAG)------ --U-UAG-UG UUCGAACCN- NNAAUU-UG. .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.2.2 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.2.2 METHANOSAETA. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.2.2 METHANOSAETA. ORGANISM 1.1.3.2.2 METHANOSAETA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mst.CALS-1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta thermoacetophila str. CALS-1 DSM 3870. ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta thermoacetophila str. CALS-1 DSM 3870. ORGANISM Methanosaeta thermoacetophila. REFERENCE 1 AUTHORS Kamagata,Y., Kawasaki,H., Oyaizu,H., Nakamura,K., Mikami,E., Endo,G., Koga,Y. and Yamasato,K. TITLE Characterization of three thermophilic strains of Methanothrix ('Methanosaeta') thermophila sp. nov. and rejection of Methanothrix ('Methanosaeta') thermoacetophila JOURNAL Int. J. Syst. Bacteriol. 42, 463-468 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 3870 Sequence information (bases 1 to 1924) Corresponding GenBank entry: S42716 (bases 1 to 186) isolate_name= CALS-1 BASE COUNT 134 a 135 c 174 g 95 t 1386 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... ......GGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GCA A)CCGCGAUA 541 AG|GGGACCU CGAGUG-CU- ---------- (----)---- -------GGG UU--ACA--A 601 AC--CUGGC| UUUUGGGCUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAGUC .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )....GUAAU CCUUGAGGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGAUCCG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCAC GG--(U-GC- GA)C--CGUU GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGU.. ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... ......UAGG UCAGUAUGCC CCGANUCCCC AGGGCUACAC 1561 GCGGGCUACA AUGGUCGGCA CAAUGGGU-A -UCGACCCC( GAGA)GGGGU AGGCAAUCCC 1621 CUAAAGCCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mst.thermo 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta thermoacetophila str. CALS-1 DSM 3870. ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta thermoacetophila str. CALS-1 DSM 3870. ORGANISM Methanosaeta thermoacetophila. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 3870 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59141 isolate_name= CALS-1 BASE COUNT 321 a 343 c 446 g 256 t 558 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU ACUGGU(UGA )UCCU|-GCC AGAGGUU-NC 61 UGCUAUCGGG GUCCGACUAA GCCAUGCGA- --GUUGAAUG ---------- ------UCC( 121 -GA----AA) GGG------- -----|---C AUAGCGUACU GCUCAGUAAC ACGUGGNCAA 181 CCUGCCCUGA GGACUGGAAU AAUCC--CG- G(-GAAA)CU NGGNGUNAUU CCAGAUA--U 241 GUCA--GAAC ACC-(UGGAA U--)-NGGU- UCUG-GCA-- GAA-AUNC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --CAGGAUGG |GUCUGCGG| CCUAUCA-GG 361 GUAGUAGUGG GU(GUAACGU )ACCUACUA| GCCUA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GNGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AANCUUUACA AUGCGG(GCA A)CCGCGAUA 541 AG|GGGACCU CGAGUG-CU- ---------- (----)---- -------GGG UU--ACA--A 601 AC--CUGGC| UGUUGGGCUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAGUC UAUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CNN NUCGAGUGGU AACCGCUGUU AUUGGGU|CU AAAGGGUCUG UAGUNN|GCC 781 GGCUNAG|-- UCUCUUGGG- AAAUCUGGCA UC(UC-A)AG UGUCA-GNCU -GNCAGGGGA 841 UACUGGCC-N NNNU-GGGAC CGGGAGAGGU GAGA|GGUAC CUCAGGGGUA GGG(NUNAAA 901 )UCUUGUAAU CCUUGAGGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGAUCCG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCCA CGG-(U-GC- GA)--CCGUN GNCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUNAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGC. .......... .....(.... 1201 AACG)CCGGA AA--GCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGAAGGUCAG GCUGAAGA-C 1321 CUUACC-GGA -UUCGCUGAG |AGGUGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC GAGACCCACG |CCUACAG-U UGC-CAGCGA 1441 UCCC------ (UCCG-)--- -GGGAGGCG| GGUACU-CUG UGGNNACCGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAAUGGG CAACGGUAGG UCAGUAUGCC CNGANUCCCC UGGGCUACAC 1561 GCGGGCUACA AUGGUCGGCA CAAUGGGU-A -UCGACCCC( GAGA)GGGGU AGGCAAUCCC 1621 CUNAAGCCNA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCNCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU CCCUNCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU AGGGUCC-GG AUGA-G-GGU GU-AUC---- -----(--CC 1801 UU-)------ --G-AUA-CA UUCGAAUCC- NGNCUU-UGC AAGGGGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mst.therm2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta thermoacetophila str. Z-517 DSM 4774 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta thermoacetophila str. Z-517 DSM 4774 (T). ORGANISM Methanosaeta thermoacetophila. REFERENCE 1 AUTHORS Kamagata,Y., Kawasaki,H., Oyaizu,H., Nakamura,K., Mikami,E., Endo,G., Koga,Y. and Yamasato,K. TITLE Characterization of three thermophilic strains of Methanothrix ('Methanosaeta') thermophila sp. nov. and rejection of Methanothrix ('Methanosaeta') thermoacetophila JOURNAL Int. J. Syst. Bacteriol. 42, 463-468 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 4774 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: S42725 (bases 1 to 186) DSM 4774 (T) = VKM B-1831 isolate_name= Z-517 BASE COUNT 136 a 135 c 171 g 94 t 1388 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... ......GGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GCA A)CCGCNAUA 541 AG|GGGACCU CGAGUG-CU- ---------- (----)---- -------GGG UU--ACA--A 601 AC--CUGGC| UGUUGGGCUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAGUC .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )....GUAAU CCUCGAGGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGAUCCG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCAC GG--(U-NN- GA)C--CGUU GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGU.. ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... ......UAGG UCAGUAUGCC CCGAAUCCCC CGGGCUACAC 1561 GCGGGCUACA AUGGUCGGUA CAAUGGGU-A -UCGACCCC( GAAA)GGGGU AGGCAAUCCC 1621 CUAAAACCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mst.sp.2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta thermoacetophila str. PT DSM 6194 (T). ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta thermoacetophila str. PT DSM 6194 (T). ORGANISM Methanosaeta thermoacetophila. REFERENCE 1 AUTHORS Kamagata,Y., Kawasaki,H., Oyaizu,H., Nakamura,K., Mikami,E., Endo,G., Koga,Y. and Yamasato,K. TITLE Characterization of three thermophilic strains of Methanothrix ('Methanosaeta') thermophila sp. nov. and rejection of Methanothrix ('Methanosaeta') thermoacetophila JOURNAL Int. J. Syst. Bacteriol. 42, 463-468 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 6194 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: S42730 (bases 1 to 186) isolate_name= PT NB: DSM 6194 (T) is Methanothrix thermophila Bact-Nom states Methanothrix is not a valid genus name Bact-Nom has Methanothrix thermophila as only Methanothrix BASE COUNT 136 a 136 c 173 g 94 t 1385 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... ......GGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CAUG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCGG(GCA A)CCGCGAUA 541 AG|GGGACCU CGAGUG-CU- ---------- (----)---- -------GGG UU--ACA--A 601 AC--CUGGC| UGUUGGGCUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAGUC .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )....GUAAU CCUCGAGGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGAUCCG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCAC GG--(U-GC- GA)C--CGUU GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGU.. ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... ......UAGG UCAGUAUGCC CCGAAUCCCC CGGGCUACAC 1561 GCGGGCUACA AUGGUCGGUA CAAUGGGU-A -UCGACCCC( GAAA)GGGGU AGGCAAUCCC 1621 CUAAAACCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mst.conci1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta concilii str. Opfikon DSM 2139. ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta concilii str. Opfikon DSM 2139. ORGANISM Methanosaeta concilii. REFERENCE 1 AUTHORS Eggen,R.I.L., Harmsen,H., Geerling,A. and de Vos,W.M. TITLE Nucleotide sequence of a 16S rRNA encoding gene from the Archaebacterium Methanothrix soehngenii JOURNAL Nucleic Acids Res. 17, 9469-9469 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 2139 Sequence information (bases 1 to 1924) Corresponding GenBank entry: X16932 isolate_name= Opfikon NB: no str or cc# given in orig refs. former name Methanothrix soehngenii BASE COUNT 361 a 350 c 461 g 299 t 453 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGAG GUUCGACUAA GCCAUGCGA- --GUCGAAUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AUGGCGAACU GCUCAGUAAC ACGUGGACAA 181 CCUGCCCUUA GGUUGGGUAU AAACC--CG- G(-GAAA)CU GGGUAUAAUA CCCGAUA--G 241 GUCU--CGAU UGC-(UGGAA U--)-GCAU- CGAG-AUU-- UAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --AAGGAUGG |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAGCGU )ACCUACUA| GCCUA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCUG(GCA A)CAGCGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- -------AGG UU--ACA--A 601 AU--CUGGC| UGUCGAGAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUUU CAUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CUCGAGUGGU AACCGUUAUU AUUGGGU|CU AAAGGGUCUG UAGCCG|GCC 781 GGAUAAG|-- UCUCUUGAG- AAAUCUGGCA GC(UU-A)AC UGUCA-GGCU -UUCAGGAGA 841 UACUGUCU-G GCUC-GAGGC CGGGAGAGGU GAGA|GGUAC UUCAGGGGUA GGG(GUGAAA 901 )UCUUGUAAU CCUUGAAGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGACCUG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCCA CGG-(U-GC- GA)--CCGUU GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCU -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA AA--UCUUAC CGGGAC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGAAGGCCAG GCUGAAGA-C 1321 UUUGCC-GGA -UUAGCUGAG |AGGUGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCACAG-U UGC-CAGCGU 1441 ACUC------ (UCUG-)--- -GAGUGACG| GGUACA-CUG UGGGGACCGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAAUGGG CAACGGUAGG UCAGUAUGCC CCGAAUAUCC CGGGCUACAC 1561 GCGAGCUACA AUGGUUGGUA CAAUGGGU-A -UCUACCCC( GAAA)GGGGA CGGGAAUCUC 1621 CUAAAACCAA UCUUAGUUCG GAUUGAGGGC (UGCAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU AGGGUCU-GA AUGA-G-AGC GC-UUUC--- -----(--UU 1801 U--)------ -GG-AGG-CG UUCGAAUUU- GGGCUU-UGC AAGGGGGGUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mst.conci6 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta concilii str. Opfikon. ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta concilii str. Opfikon. ORGANISM Methanosaeta concilii. REFERENCE 1 AUTHORS Eggen,R., Harmsen,H. and de Vos,W.M. TITLE Organization of a ribosomal RNA gene cluster from the Archaebacterium Methanothrix soehngenii JOURNAL Nucleic Acids Res. 18, 1306-1306 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X51423 (bases 206 to 1677) isolate_name= Opfikon BASE COUNT 362 a 350 c 461 g 299 t 452 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGAG GUUCGACUAA GCCAUGCGA- --GUCGAAUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AUGGCGAACU GCUCAGUAAC ACGUGGACAA 181 CCUGCCCUUA GGUUGGGUAU AAACC--CG- G(-GAAA)CU GGGUAUAAUA CCCGAUA--G 241 GUCU--CGAU UGC-(UGGAA U--)-GCAU- CGAG-AUU-- UAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --AAGGAUGG |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAGCGU )ACCUACUA| GCCUA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCUG(GCA A)CAGCGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- -------AGG UU--ACA--A 601 AU--CUGGC| UGUCGAGAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUUU CAUAGCAAGG GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CUCGAGUGGU AACCGUUAUU AUUGGGU|CU AAAGGGUCUG UAGCCG|GCC 781 GGAUAAG|-- UCUCUUGAG- AAAUCUGGCA GC(UU-A)AC UGUCA-GGCU -UUCAGGAGA 841 UACUGUCU-G GCUC-GAGGC CGGGAGAGGU GAGA|GGUAC UUCAGGGGUA GGG(GUGAAA 901 )UCUUGUAAU CCUUGAAGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGACCUG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCCA CGG-(U-GC- GA)--CCGUU GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCU -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA AA--UCUUAC CGGGAC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGAAGGCCAG GCUGAAGA-C 1321 UUUGCC-GGA -UUAGCUGAG |AGGUGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACG |CCCACAG-U UGC-CAGCGU 1441 ACUC------ (UCUG-)--- -GAGUGACG| GGUACA-CUG UGGGGACCGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAAUGGG CAACGGUAGG UCAGUAUGCC CCGAAUAUCC CGGGCUACAC 1561 GCGAGCUACA AUGGUUGGUA CAAUGGGU-A -UCUACCCC( GAAA)GGGGA CGGGAAUCUC 1621 CUAAAACCAA UCUUAGUUCG GAUUGAGGGC (UGCAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU AGGGUCU-GA AUGA-G-AGC GC-UUUC--- -----(--UU 1801 U--)------ -GG-AGG-CG UUCGAAUUU- GGGCUU-UGC AAGGGGGGUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC UA~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mst.concil 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta concilii str. FE DSM 3013. ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta concilii str. FE DSM 3013. ORGANISM Methanosaeta concilii. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A detailed phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) STANDARD No information REFERENCE 2 AUTHORS Woese,C.R., Achenbach,L., Rouviere,P. and Mandelco,L. TITLE Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts JOURNAL Syst. Appl. Microbiol. 14, 364-371 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 3013 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59146 isolate_name= FE BASE COUNT 356 a 342 c 442 g 290 t 494 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGUU-AC 61 UGCUAUCGAG GUUCGACUAA GCCAUGCGA- --GUCGAAUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AUGGCGAACU GCUCAGUAAC ACGUGGACAA 181 CCUGCCCUUA GGACGGGGAU AAACC--CG- G(-GAAA)CU GGGUAUAAUA CCCGAUA--G 241 GUCU--CGAU UGC-(UGGAA U--)-GCAU- CGAG-AUU-- UAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCU- --AAGNAUGG |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGUGG GU(GUAGCGU )ACCUACUA| GCCUA-CGAC GGGUACGGG| UUGU(GAGA) 421 GCGA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCUG(GCA A)CAGCGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- -------AGG UU--ACA--A 601 AU--CUGGC| UGUCGAGAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUUU CAUAGCAAGG GCCGGGCN-A GACCN-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CNN CUCGAGUGGU AACCGUUAUU AUUGGGU|CU AAAGGGUCUG UAGCCG|GCC 781 GGAUAAG|-- UCUCUUGAG- AAAUCUGGCA GC(UU-A)AC UGUCA-GGCU -UUCAGGAGA 841 UACUGUCU-N GCUU-GAGGC CNGGAGAGGU GAGA|GGUAC UUCAGGGGUA GGG(GUGAAA 901 )UCUUGUAAU CCUUGAAGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGACCUG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCCA CGG-(U-GC- NA)--CCGUN GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCU -UNNNGUUUA AUUGG(AUUC 1201 AACG)CCGGA AA--UCUUAC CGGGAC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAUA UGAAGGCCAG GCUGAAGA-C 1321 UUUGCC-GGA -UUAGCUGAG |AGGUGGUGC AUG|GCCGUC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGNAACGAGC GAGACCCACG |CCCACAG-U UGC-CAGCGU 1441 ACUC------ (UCUG-)--- -GAGUGACG| GGUACA-CUG UGGNNACCGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAAUGGG CAACGGUAGG UCAGUAUGCC CNGAAUAUCC CGGGCUACAC 1561 GCGAGCUACA AUGGUUGGUA CAAUGGGU-A -UCUACCCC( GAAA)GGGGA CGGGAAUCUC 1621 CUAAAACCAA UCUUAGUUCG GAUUGAGGGC (UGCAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCACCCGAGU AGGGUCU-GA AUGA-G-AGC GC-UUUC--- -----(--UU 1801 U--)------ -GG-AGG-CG UUCGAAUUU- GGGCUU-UGC AAGGGGGG.. .....GUAAC 1861 AAG....... ....(.GAA) UCUG...... GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mst.conci3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta concilii str. GP6 DSM 3671. ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta concilii str. GP6 DSM 3671. ORGANISM Methanosaeta concilii. REFERENCE 1 AUTHORS Kamagata,Y., Kawasaki,H., Oyaizu,H., Nakamura,K., Mikami,E., Endo,G., Koga,Y. and Yamasato,K. TITLE Characterization of three thermophilic strains of Methanothrix ('Methanosaeta') thermophila sp. nov. and rejection of Methanothrix ('Methanosaeta') thermoacetophila JOURNAL Int. J. Syst. Bacteriol. 42, 463-468 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 3671 Sequence information (bases 1 to 1924) Corresponding GenBank entry: S42681 (bases 1 to 186) DSM 3671 = OCM 69 = NRC 2989 = ATCC 35969 isolate_name= GP6 BASE COUNT 145 a 130 c 163 g 100 t 1386 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... ......GGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCUG(GCA A)CAGCGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- -------AGG UU--ACA--A 601 AU--CUGGC| UGUCGANAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUUU .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )....GUAAU CCUUGAAGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGAACUG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCAC GG--(U-GC- GA)C--CGUU GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGU.. ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... ......UAGG UCAGUAUGCC CCGAAUAUCC CGGGCUACAC 1561 GCGAGCUACA AUGGUUGGUA CAAUGGGU-A -UCUACCCC( GAAA)GGGGA CGGGAAUCUC 1621 CUAAAACCAA UCUUAGUUCG GAUUGAGGGC (UGCAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mst.conci5 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta concilii str. PM. ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta concilii str. PM. ORGANISM Methanosaeta concilii. REFERENCE 1 AUTHORS Kamagata,Y., Kawasaki,H., Oyaizu,H., Nakamura,K., Mikami,E., Endo,G., Koga,Y. and Yamasato,K. TITLE Characterization of three thermophilic strains of Methanothrix ('Methanosaeta') thermophila sp. nov. and rejection of Methanothrix ('Methanosaeta') thermoacetophila JOURNAL Int. J. Syst. Bacteriol. 42, 463-468 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: S42713 (bases 1 to 186) isolate_name= PM BASE COUNT 142 a 130 c 163 g 99 t 1390 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... ......GGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCUG(GCA A)CAGCGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- -------AGG UU--ACN--N 601 AU--CUGGC| UGUCGANAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUUU .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )....GUAAU CCUUGAAGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGAACUG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCAC GG--(U-GC- GA)C--CGUU GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGU.. ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... ......UAGG UCAGUAUGCC CCGANNAUCC CGGGCUACAC 1561 GCGAGCUACA AUGGUUGGUA CAAUGGGU-A -UCUACCCC( GAAA)GGGGA CGGGAAUCUC 1621 CUAAAACCAA UCUUAGUUCG GAUUGAGGGC (UGCAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mst.conci4 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta concilii str. UA. ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta concilii str. UA. ORGANISM Methanosaeta concilii. REFERENCE 1 AUTHORS Kamagata,Y., Kawasaki,H., Oyaizu,H., Nakamura,K., Mikami,E., Endo,G., Koga,Y. and Yamasato,K. TITLE Characterization of three thermophilic strains of Methanothrix ('Methanosaeta') thermophila sp. nov. and rejection of Methanothrix ('Methanosaeta') thermoacetophila JOURNAL Int. J. Syst. Bacteriol. 42, 463-468 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: S42698 (bases 1 to 186) isolate_name= UA BASE COUNT 142 a 131 c 162 g 99 t 1390 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... ......GGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCUG(GCA A)CAGCGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- -------AGG UU--ACN--N 601 AU--CUGGC| UGUCGANAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUUU .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )....GUAAU CCUUGAAGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACCGAACUG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCAC GG--(U-GC- GA)C--CGUU GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGU.. ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... ......UAGG UCAGUAUGCC CCGANNAUCC CGGGCUACAC 1561 GCGAGCUACA AUGGUUGGUA CAAUGGGU-A -UCUACCCC( GAAA)GGGGA CGGGAAUCUC 1621 CUAAAACCAA UCUUAGUUCG GAUUGAGGGC (UGCAACUC) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mst.conci2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosaeta concilii str. Opfikon DSM 2139. ACCESSION No information KEYWORDS No information. SOURCE Methanosaeta concilii str. Opfikon DSM 2139. ORGANISM Methanosaeta concilii. REFERENCE 1 AUTHORS Kamagata,Y., Kawasaki,H., Oyaizu,H., Nakamura,K., Mikami,E., Endo,G., Koga,Y. and Yamasato,K. TITLE Characterization of three thermophilic strains of Methanothrix ('Methanosaeta') thermophila sp. nov. and rejection of Methanothrix ('Methanosaeta') thermoacetophila JOURNAL Int. J. Syst. Bacteriol. 42, 463-468 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 2139 Sequence information (bases 1 to 1924) Corresponding GenBank entry: S42673 (bases 1 to 186) isolate_name= Opfikon BASE COUNT 142 a 129 c 164 g 99 t 1390 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... ......GGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUUACA AUGCUG(GCA A)CAGCGAUA 541 AG|GGAACCU CGAGUG-CC- ---------- (----)---- -------AGG UU--ACN--N 601 AU--CUGGC| UGUCGANAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUUU .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )....GUAAU CCUUGAAGGA CCACCAGUGG C(GAAG)GCG U-CUCACCAG AACGGAACUG 961 ACGGCAAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU ACUCGCUA|G GUGUCGGCAC GG--(U-GC- GA)C--CGUU GUCGG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|ACC UGGGAAGU.. ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... ......UAGG UCAGUAUGCC CCGANNAUCC CGGGCUACAC 1561 GCGAGCUACA AUGGUUGGUA CAAUGGGU-A -UCUACCCC( GAAA)GGGGA CGGGAAUCUC 1621 CUAAAACCAA UCUUAGUUCG GAUUGAGGGC (UGCAACUG) GCCCUCAUGA AGCUGGAAUC 1681 CGUAGUAAUC GCGUU(UCAA CAG)AACGCG GUGAAUACGU .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.3-HA 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.3 HALOBACULUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.3 HALOBACULUM_ASSEMBLAGE. ORGANISM 1.1.3.3 HALOBACULUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Msr.spbog 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanosarcina sp. str. R17. ACCESSION No information KEYWORDS No information. SOURCE Methanosarcina sp. str. R17. ORGANISM Methanosarcina sp. REFERENCE 1 AUTHORS Hales,B.A., Edwards,C., Ritchie,D.A., Hall,G., Pickup,R.W. and Saunders,J.R. TITLE Isolation and identification of Methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis JOURNAL Appl. Environ. Microbiol. 62, 668-675 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L48408|g1161044 isolate_name= R17 BASE COUNT 238 a 229 c 326 g 182 t 949 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .UCCGAUUAA GCCAUGCGA- --GUCUAGAG ---------- -------GG( 121 -GUA--AUG) CC-------- -----|---C UCGGCGAACG GCUCAGUGAC ACGUGGACAA 181 CCUACCCUCA GAUCUGGGAU AACUC--CG- G(-GAAA)CU GGAGAUAAUA CCGGAUA--A 241 UCCG--UGAA CGC-(UGGAA U--)-GCCU- UACG-GUU-- CAA-A-GC-- ---------- 301 (--UUUA--- )------|-- --GC-GUCU- --GAGGAUGG |GUCUGCGG| CCGAUUA-G- 361 GUAGUUGCUG GG(GUAACGU )CCCAACAA| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGUCC(UAC G)GGGCGCAC GAGGCCGG-A AAACUUUACA CUGC-G(CGA A)CA--GAUA 541 AG|GGGACCU CGAGUG-CG- ---------- (----)---- -------UGC GC--AAU--G 601 CG--UACGC| UUUUCACAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUGU GG-AAUAAGA GCCGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCGG-|CGG CUCAAGUGGU GGCCGCUAUU AUUGGGC|UU AAAGGGUCCG UAGCCG|GAC 781 CAGUUAG|-- UCCAUUGGG- AAAUCUUACG GC(UU-A)AC CGUAA-GGCU -GCCAGUGGA 841 UACUGCUG-G UCUU-GGGAC CGGGAGAGGC AAGA|GGUAC UUCAGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUUGAGGGA CCGCCAGUGG C(GAAG)GCG U-CUUGCUAG AACGGGUCCG 961 ACGGUGAGGG ACGAAAGCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 CGUAAACGAU GCGAGCUA|G GUGUCACGUG GAU-(U-GC- GA)--AUCCA UGUGG-UGCC 1081 GUAGG(GAAA )CCGUGAAGC UCGC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA AA--GCUCAC CGGAGA---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--GGGA UGAGGGCCAG GCUGAUGA-C 1321 CUUGCU-AGA -CUAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GUUCG U|ACC(GUGA 1381 )GG....... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Hbm.gomorr 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halobaculum gomorrense str. DS2807 DSM 9297 (T). ACCESSION No information KEYWORDS No information. SOURCE Halobaculum gomorrense str. DS2807 DSM 9297 (T). ORGANISM Halobaculum gomorrense. REFERENCE 1 AUTHORS Oren,A., Gurevich,P., Gemmell,R.T. and Teske,A. TITLE Halobaculum gomorrense gen. nov., sp. nov., a novel extremely halophilic archaeon from the Dead Sea JOURNAL Int. J. Syst. Bacteriol. 45, 747-754 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9297 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: L37444|g1063515 isolate_name= DS2807 BASE COUNT 342 a 368 c 461 g 266 t 487 others ORIGIN 1 .......... .......... .......... ......(... ).CCU|-GCC GGAGGUC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUCGANCG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C GUGGCGAAUA GCUCAGUAAC ACGUGGCCAA 181 UCUACCCUAC AGWSSSSUAU AWCCU--CG- G(-GAAA)CU GAGGCUAAUA SSSSAUA--C 241 UGUC-UCCUA CGC-(UUGAA C--)-ACCG- GGAG-CUG-- GAA-ACGU-- ---------- 301 (--UCCG--- )------|-- --AC-GCYG- --UAGGAUGA |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAAUGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAACCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUG-CG- ---------- (----)---- -------GAG GC-AUAGU-G 601 CC--UUNGC| UNNNNUGCAC C--------- ------(CUA AGGC--)--- ---------- 661 ----GGUGCA CG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCAAGUGAU GGCCGAUUUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GCC 781 GGGCAAG|-- UUCGUCGGG- AAAUCUACCA GC(UC-A)AC UGGUA-GGCG -UCCGGCGAA 841 AACUGCAC-G GCUU-GGGAC AGGGAGACUC GAAG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCGAUGG C(GAAA)GCA C-UUCGAGAG AACUGAUCCG 961 ACGGUCAGGA ACGAAAGCUG GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACGAU GUUCGCUA|G GUGCGACGCA GAC-(U-AC- GA)--GUCUG UGUUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GAAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUU-NNNA UGACGACCAG UGUGAUGA-G 1321 CUUGUCA-GA CGAU-CAKAB |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |UCCCUAA-U UGC-CAGCAA 1441 GACC------ (CACGA)--- -GGUCGUUG| GGUACA-UUA GGGAGACUGC CGCC(GC-CA 1501 A)GGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGGC UGGGCUACAC 1561 GCGGGCUACA AUGGUCAGGA CAAUGGGU-U -CCUACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACCUGG UCGUAGUUCG GAUUGUGGGC (UGAAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAC AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCC UG-G------ -----(--GU 1801 UG-)------ -----CC-AG GUCGAAUCU- GGGCUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(NNNA) UCUGCGGCUG GAUCACCUCC UU..|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.4-EX 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.4 EXTREME_HALOPHILES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.4 EXTREME_HALOPHILES. ORGANISM 1.1.3.4 EXTREME_HALOPHILES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.3.4.1 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.4.1 HR.SACCHAROVORUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.4.1 HR.SACCHAROVORUM_SUBGROUP. ORGANISM 1.1.3.4.1 HR.SACCHAROVORUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hr.sacchar 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halorubrum saccharovorum. ACCESSION No information KEYWORDS No information. SOURCE Halorubrum saccharovorum. ORGANISM Halorubrum saccharovorum. REFERENCE 1 AUTHORS Holmes,M.L., Olsen,G.J. and Dyall-Smith,M.L. TITLE The halophilic archaebacteria Hb. lacusprofundi and Hb. saccharovorum are closely related: 16s rRNA rRNA gene sequence comparison JOURNAL Nucleic Acids Res. 18, 4607-4607 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X53572 (bases 1 to 517) Former RDP Sids: Hb.sacchar NCIMB 2081 (T) = ATCC 29252 = DSM 1137 = IFO 14717 = JCM 8865 (T) NB: former name Halobacterium saccharovorum BASE COUNT 307 a 340 c 409 g 233 t 635 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUUGGG AUUCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUGGCGAAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUUC GGAGCUCCAU ACCCU--CG- G(-GAAA)CU GAGGCUAAUA GAGCAUA--C 241 CACA--AUCC AGC-(UGGAA U--)-GAGG- AUUG-UGC-- CAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GC--- CGAAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUACGGG| UCAU(GAGA) 421 GUGAGAACCC GGAGACGGAA UCUGAGACAA G|AUUCCGGG CC(CUACGG- G-CG)CAGCA 481 GGCGCG(AAA C)CUUU---- --AC------ -AC----UC- ---CAC(GAC A)GUGCGAUA 541 AG|GGAAUCC CAAGU--CG- ---------- (----)---- -------CAG GC-AUAGA-G 601 CC--UGCGC| UUUUGUACAC C--------- ------(GUA GGGA--)--- ---------- 661 ----GGUGUA CG-AAUAAGG GCUGGGCA-A GACCG-G..( .......... ........). 721 ......|... .......... .......... .......|.. .......... ....UG|GCC 781 GCACAAG|-- UCCAUCGGA- AAAUCNGNCC GC(UC-A)AC GGGUG-GGCG -UCCGGUGGA 841 AACUGUGU-G GCUU-GGGAC CGGAAGGCGC GACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCGCCGAUGG C(GAAA)GCA C-GUCGCGAG GACGGAUCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACAAU GUCUGUUA|G GUGUGGCUCC CAC-(U-AC- GA)--GUGGG UGCUG-UGCC 1081 GUAGG(GAAG )CCGCUAAAC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGA....... 1141 .......... .......... .......... .......... .......... .....(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUA-GUAA UGACGAUCAG GUUGAUGA-C 1321 CUUAUC-CGA -GCUUCAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |UCCUUAC-C UUC-CAGCAG 1441 CACU------ (UCGA-)--- -AGUGGCUG| GGUACG-UUA GGGAGACCGC CGUG(GC-CA 1501 A)CACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAAGGGU-U -CCAACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACUCGA UCGUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAC AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCG CG-U------ -----(---U 1801 CC-)------ -----AC-GC GUCGAAUCU- GG-CUC-CGC AAGGGGGCUU NAGU...... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Hr.saccha3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halorubrum saccharovorum. ACCESSION No information KEYWORDS No information. SOURCE Halorubrum saccharovorum. ORGANISM Halorubrum saccharovorum. REFERENCE 1 AUTHORS McGenity,T.J. and Grant,W.D. TITLE Transfer of Halobacterium saccharovorum, Halobacterium sodomense, Halobacterium trapanicum NRC 34021 and Halobacterium lacusprofundi to the genus Halorubrum gen. nov., as Halorubrum saccharovorum comb. nov., Halorubrum sodomense comb. nov., Halorubrum trapanicum comb. nov., and Halorubrum lacusprofundi comb. nov. JOURNAL Syst. Appl. Microbiol. 18, 237-243 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X82167|g1041402 NCIMB 2081 (T) = ATCC 29252 = DSM 1137 = IFO 14717 = JCM 8865 (T) BASE COUNT 349 a 375 c 466 g 262 t 472 others ORIGIN 1 .......... .......... .......... .....U(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUUGGG AUUCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUGGCGAAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCNUUC GGAGCUCCAU ACCCU--CG- G(-GAAA)CU GAGGCUAAUA GAGCAUA--C 241 CACA--AUCC AGC-(UGGAA U--)-GAGG- AUUG-UGC-- CAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GC--- CGAAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUACGGG| UCAU(GAGA) 421 GUGAGAACCC GGAGACGGAA UCUGAGACAA G|AUUCCGGG CC(NUACGG- GGCG)CAGCA 481 GGCGCG(AAA C)CUUU---- --AC------ -AC----UG- ---CAC(GAC A)GUGCGAUA 541 AG|GGAAUCC CAAGUN-CG- ---------- (----)---- -------CAG GC-AUAGA-G 601 CC--UGCGC| UUUUGUACAC C--------- ------(GUA GGGA--)--- ---------- 661 ----GGUGUA CG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCACAAG|-- UCCAUCGGA- AAAUCCACCC GC(UC-A)AC GGGUG-GGCG -UCCGGUGGA 841 AACUGUGU-G GCUU-GGGAC CGGAAGGCGC GACG|GGUAC GUCCGGNGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCGCCGAUGG C(GAAA)GCA C-GUCGCGAG GACGGAUCCG 961 ACAGUNAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACAAU GUCUGUUA|G GUGUGGCUCC CAC-(U-AC- GA)--GUGGG UGCUG-UGCC 1081 GUAGG(GAAG )CCGCUAAAC AGAC|N|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCN -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUA-GUAA UGACGAUCAG GUUGAUGA-C 1321 CUUAUC-CGA -GCUUCAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |UCCUUAC-U UGC-CAGCAG 1441 CACU------ (GCGA-)--- -AGUGGCUG| GGGACA-GUA GGGAGACCGC CGUG(GC-CA 1501 A)CACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAAGGGU-U -CCAACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACUCGA UCGUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAC AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCG CG-U------ -----(---U 1801 CC-)------ -----AC-GC GUCGAAUCUN GG-CUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCU.. ....|..... ........~~ 1921 ~~~| // LOCUS Hr.saccha2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halorubrum saccharovorum. ACCESSION No information KEYWORDS No information. SOURCE Halorubrum saccharovorum. ORGANISM Halorubrum saccharovorum. REFERENCE 1 AUTHORS Nuttall,S.D. and Dyall-Smith,M.L. TITLE Ch2, a novel halophilic archaeon from an Australian solar saltern [published erratum appears in Int J Syst Bacteriol 1994 Apr;44(2): 375] JOURNAL Int. J. Syst. Bacteriol. 43, 729-734 (1993) STANDARD No information REFERENCE 2 AUTHORS Kamekura,M. and Dyall-Smith,M.L. TITLE Taxonomy of the family Halobacteriaceae and the description of two new genera, Halorubrobacterium and Natrialba JOURNAL J. Gen. Appl. Microbiol. 41, 333-350 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U17364|g894176 Former RDP Sids: Hb.saccha2 JCM 8865 (T) = ATCC 29252 = NCIMB 2081 (T) = DSM 1137 = IFO 14717 NB: former name Halobacterium saccharovorum BASE COUNT 350 a 384 c 471 g 264 t 455 others ORIGIN 1 .......... .......... ........AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUUGGG AUUCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UC----AG) ACU------- -----|---C GUGGCGAAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUUC GGAGCUCCAU ACCCU--CG- G(-GAAA)CU GAGGCUAAUA GAGCAUA--C 241 CACA--AUCC AGC-(UGGAA U--)-GAGG- AUUG-UGC-- CAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GC--- CGAAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUACGGG| UCAU(GAGA) 421 GUGAGAACCC GGAGACGGAA UCUGAGACAA G|AUUCCGGG CC(CUACGG- GGCG)CAGCA 481 GGCGCG(AAA C)CUUU---- --AC------ -AC----UG- ---CAC(GAC A)GUGCGAUA 541 AG|GGAAUCC CAAGUG-CG- ---------- (----)---- -------CAG GC-AUAGA-G 601 CC--UGCGC| UUUUGUACAC C--------- ------(GUA GGGA--)--- ---------- 661 ----GGUGUA CG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCACAAG|-- UCCAUCGGA- AAAUCCACCC GC(UC-A)AC GGGUG-GGCG -UCCGGUGGA 841 AACUGUGU-G GCUU-GGGAC CGGAAGGCGC GACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCGCCGAUGG C(GAAA)GCA C-GUCGCGAG GACGGAUCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACAAU GUCUGUUA|G GUGUGGCUCC CAC-(U-AC- GA)--GUGGG UGCUG-UGCC 1081 GUAGG(GAAG )CCGCUAAAC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUA-GUAA UGACGAUCAG GUUGAUGA-C 1321 CUUAUC-CGA -GCUUCAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |UCCUUAC-U UGC-CAGCAG 1441 CACU------ (GCGA-)--- -AGUGGCUG| GGGACA-GUA GGGAGACCGC CGUG(GC-CA 1501 A)CACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAAGGGU-U -CCAACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACUCGA UCGUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAC AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCG CG-U------ -----(---U 1801 CC-)------ -----AC-GC GUCGAAUCU- GG-CUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U...|..... ........~~ 1921 ~~~| // LOCUS Hr.lacspr2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halorubrum lacusprofundi. ACCESSION No information KEYWORDS No information. SOURCE Halorubrum lacusprofundi. ORGANISM Halorubrum lacusprofundi. REFERENCE 1 AUTHORS McGenity,T.J. and Grant,W.D. TITLE Transfer of Halobacterium saccharovorum, Halobacterium sodomense, Halobacterium trapanicum NRC 34021 and Halobacterium lacusprofundi to the genus Halorubrum gen. nov., as Halorubrum saccharovorum comb. nov., Halorubrum sodomense comb. nov., Halorubrum trapanicum comb. nov., and Halorubrum lacusprofundi comb. nov. JOURNAL Syst. Appl. Microbiol. 18, 237-243 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X82170|g1041397 ACAM 34 (T) = DSM 5036 = ATCC 49239 = UQM 3107 = JCM 8891 (T ) BASE COUNT 353 a 373 c 469 g 268 t 461 others ORIGIN 1 .......... .......... ........AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUUGGG AUUCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UC----AG) ACU------- -----|---C GUGGCGAAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUUC GGAGCACGAU ACCCU--CG- G(-GAAA)CU GAGGUUAAUA GUGCAUA--C 241 CACA--AUCC ACC-(UGGAA U--)-GAGG- AUUG-UGC-- CAA-AUGC-- ---------- 301 (--UCCG--- )------|-- --GC-GC--- CGAAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUACGGG| UCAU(GAGA) 421 GUGAGAACCN GGAGACGGAA UCUGAGACAA G|AUUCCGGG CC(CUACGG- GGCG)CAGCA 481 GGCGCG(AAA C)CUUU---- --AC------ -AC----UG- ---CAC(GCC A)GUGCGAUA 541 AG|GGAAUCC CAAGUG-CG- ---------- (----)---- -------UAG GC-AUAGA-G 601 CC--UACGC| UUUUGUACAC C--------- ------(GUA GGGA--)--- ---------- 661 ----GGUGUA CG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCGCAAG|-- UCUAUCGGA- AAAUCCACCC GC(UC-A)AC GGGUG-GGCG -UCCGGUAGA 841 AACUGCGU-G GCUU-GGGAC CGGAAGGCGC GACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCGAUGG C(GAAA)GCA C-GUCGCGAG GACGGAUCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACAAU GUCUGUUA|G GUGUGGCUCC CAC-(U-AC- GA)--GUGGG UGCUG-UGCC 1081 GUAGG(GAAG )CCGCUAAAC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCGU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUA-AUAA UGACGAUCAG GUUGAUGA-C 1321 CUUAUC-CGA -GUUUCAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |UCCUUAC-U UGC-CAGCAG 1441 CACU------ (GCGA-)--- -AGUGGCUG| GGGACA-GUA GGGAGACCGC CGUG(GC-CA 1501 A)CACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGCGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAAGGGU-U -CCAACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACUCGA UCGUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAU AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCU CG-U------ -----(---U 1801 AC-)------ -----AC-GA GUCGAAUCU- GGGCUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCA..... ....|..... ........~~ 1921 ~~~| // LOCUS Hr.lacspro 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halorubrum lacusprofundi. ACCESSION No information KEYWORDS No information. SOURCE Halorubrum lacusprofundi. ORGANISM Halorubrum lacusprofundi. REFERENCE 1 AUTHORS Kamekura,M. and Dyall-Smith,M.L. TITLE Taxonomy of the family Halobacteriaceae and the description of two new genera, Halorubrobacterium and Natrialba JOURNAL J. Gen. Appl. Microbiol. 41, 333-350 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U17365|g894175 Former RDP Sids: Hb.lacspro JCM 8891 (T) = DSM 5036 = ATCC 49239 = ACAM 34 (T) = UQM 3107 NB: former name Halobacterium lacusprofundi BASE COUNT 353 a 376 c 468 g 272 t 455 others ORIGIN 1 .......... .......... ........AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUUGGG AUUCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UC----AG) ACU------- -----|---C GUGGCGAAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUUC GGAGCACGAU ACCCU--CG- G(-GAAA)CU GAGGUUAAUA GUGCAUA--C 241 CACA--AUCC ACC-(UGGAA U--)-GAGG- AUUG-UGC-- CAA-AUGC-- ---------- 301 (--UCCG--- )------|-- --GC-GC--- CGAAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUACGGG| UCAU(GAGA) 421 GUGAGAACCU GGAGACGGAA UCUGAGACAA G|AUUCCGGG CC(CUACGG- GGCG)CAGCA 481 GGCGCG(AAA C)CUUU---- --AC------ -AC----UG- ---CAC(GCC A)GUGCGAUA 541 AG|GGAAUCC CAAGUG-CG- ---------- (----)---- -------UAG GC-AUAGA-G 601 CC--UACGC| UUUUGUACAC C--------- ------(GUA GGGA--)--- ---------- 661 ----GGUGUA CG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCGCAAG|-- UCUAUCGGA- AAAUCCACCC GC(UC-A)AC GGGUG-GGCG -UCCGGUAGA 841 AACUGCGU-G GCUU-GGGAC CGGAAGGCGC GACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCGAUGG C(GAAA)GCA C-GUUGCGAG GACGGAUCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACAAU GUCUGUUA|G GUGUGGCUCC CAC-(U-AC- GA)--GUGGG UGCUG-UGCC 1081 GUAGG(GAAG )CCGCUAAAC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCGU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUA-AUAA UGACGAUCAG GUUGAUGA-C 1321 CUUAUC-CGA -GUUUCAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |UCCUUAC-U UGC-CAGCAG 1441 CACU------ (GCGA-)--- -AGUGGCUG| GGGACA-GUA GGGAGACCGC CGUG(GC-CA 1501 A)CACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGCGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAAGGGU-U -CCAACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACUCGA UCGUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAU AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCU CG-U------ -----(---U 1801 AC-)------ -----AC-GA GUCGAAUCU- GG-CUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U...|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.4.2 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.4.2 HR.SODOMENSE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.4.2 HR.SODOMENSE_SUBGROUP. ORGANISM 1.1.3.4.2 HR.SODOMENSE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hb.spCh2_2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halobacterium sp. str. Ch2 ACM 3911. ACCESSION No information KEYWORDS No information. SOURCE Halobacterium sp. str. Ch2 ACM 3911. ORGANISM Halobacterium sp. REFERENCE 1 AUTHORS Kamekura,M., Dyall-Smith,M.L., Gutierrez,M.C. and Ventosa,A . TITLE Taxonomy of the family Halobacteriaceae and the description of two new genera Halorubra and Natrialba JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Nuttall,S.D. and Dyall-Smith,M.L. TITLE Ch2, a novel halophilic archaeon from an Australian solar solar saltern [published erratum appears in Int J Syst Bacteriol 1994 Apr;44(2):375] JOURNAL Int. J. Syst. Bacteriol. 43, 729-734 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L00922 isolate_name= Ch2 geog_source= Corio Bay near Geelong, Victoria, Australia BASE COUNT 353 a 388 c 466 g 262 t 455 others ORIGIN 1 .......... .......... ........AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUUGGG AUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UC----AG) ACU------- -----|---C GUGGCGAAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUUC GGAACACAAU ACCCU--CG- G(-GAAA)CU GAGGCUAAUA AUGUAUA--C 241 CAUA--CCAC CAC-(UGGAA U--)-GAGU- GGUA-UGC-- CAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCG- --AAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUAUGGG| UCAU(GAGA) 421 GUGA------ ---------- ----GAACCC A|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGAUCC CAAGUG-CA- ---------- (----)---- -------CAG GC-AUAGC-G 601 CC--UGUGC| UUUUCGGUAC C--------- ------(CUA AGGC--)--- ---------- 661 ----GGUACC AG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CCCAAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCGCAAG|-- UCCAUCGGG- AAAUCCACCU GC(UC-A)AC AGGUG-GGCG -CCCGGUAGA 841 AACUGCGU-G GCUU-GGGAC CGGAAGGCGC GACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCGCCGAUGG C(GAAA)GCA C-GUCGCGAG AACGGAUCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACAAU GUCUGCUA|G GUGUGGCCCC CAC-(U-AC- GA)--GUGGG UGCUG-UGCC 1081 GUAGG(GAAG )CCGCUAAGC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUA-AUAA UGACGACCAG GUUGAUGA-C 1321 CUUGUC-CGA -GUUUCAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CCCUUAC-U UGC-CAGCAG 1441 UACC------ (GCGA-)--- -GGUAGCUG| GGGACA-GUA GGGGGACCGC CGUG(GC-UA 1501 A)CACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAAGGGU-U -CCUACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACUCGA UCGUAGUUCG GAGGUUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAC AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCG UU-C------ -----(---C 1801 AC-)------ -----GA-AC GUCGAAUCU- GG-CUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U...|..... ........~~ 1921 ~~~| // LOCUS Hr.trapan2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halorubrum trapanicum. ACCESSION No information KEYWORDS No information. SOURCE Halorubrum trapanicum. ORGANISM Halorubrum trapanicum. REFERENCE 1 AUTHORS McGenity,T.J. and Grant,W.D. TITLE Transfer of Halobacterium saccharovorum, Halobacterium sodomense, Halobacterium trapanicum NRC 34021 and Halobacterium lacusprofundi to the genus Halorubrum gen. nov., as Halorubrum saccharovorum comb. nov., Halorubrum sodomense comb. nov., Halorubrum trapanicum comb. nov., and Halorubrum lacusprofundi comb. nov. JOURNAL Syst. Appl. Microbiol. 18, 237-243 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X82168|g1041421 BASE COUNT 349 a 380 c 466 g 259 t 470 others ORIGIN 1 .......... .......... .......... .....U(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUUGGG AUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UC----AG) ACU------- -----|---C GUGGCGAAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCNUUC GGAACACAAU ACCCU--CG- G(-GAAA)CU GAGGCUAAUA GUGUAUA--C 241 CGUA--CCAC CAC-(UGGAA U--)-GAGU- GGUA-UGC-- CAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCG- --AAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUAUGGG| UCAU(GAGA) 421 GUGA------ ---------- ----GAACCC A|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCN(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGAUCC CAAGUN-CA- ---------- (----)---- -------CAG GC-AUAGC-G 601 CC--UGUGC| UUUUCGGUAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUACC AG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CCCAAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCGCAAG|-- UCCAUCGGG- AAAUCCACCU GC(UC-A)AC AGGUG-GGCG -CCCGGUAGA 841 AACUGCGU-G GCUU-GGGAC CGGAAGGCGC GACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCGCCGAUGG C(GAAA)GCA C-GUCGCGAG AACGGAUCCG 961 ACAGUNAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACAAU GCCUGCUA|G GUGUGGCUCC CAC-(U-AC- GA)--GUGGG UGCUG-UGCC 1081 GUAGG(GAAG )CCGCUAAGC AGGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCN -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUG-GUAA UGACGAUCAG GUUGAUGA-C 1321 CUUAUC-CGA -GCCUCAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |UCCUUAC-U UGC-CAGCAG 1441 UACC------ (GCGA-)--- -GGUAGCUG| GGGACA-GUA GGGAGACCGC CGUG(GC-UA 1501 A)CACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAAGGGU-U -CCAACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACUCGA UCGUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAC AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCG UC-C------ -----(---C 1801 AC-)------ -----GG-AC GUCGAAUCU- GGGCUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GNAA) UCUGCGGCUG GAUCACCU.. ....|..... ........~~ 1921 ~~~| // LOCUS Hr.sodome2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halorubrum sodomense str. RD-26 ATCC 33755 (T). ACCESSION No information KEYWORDS No information. SOURCE Halorubrum sodomense str. RD-26 ATCC 33755 (T). ORGANISM Halorubrum sodomense. REFERENCE 1 AUTHORS McGenity,T.J. and Grant,W.D. TITLE Transfer of Halobacterium saccharovorum, Halobacterium sodomense, Halobacterium trapanicum NRC 34021 and Halobacterium lacusprofundi to the genus Halorubrum gen. nov., as Halorubrum saccharovorum comb. nov., Halorubrum sodomense comb. nov., Halorubrum trapanicum comb. nov., and Halorubrum lacusprofundi comb. nov. JOURNAL Syst. Appl. Microbiol. 18, 237-243 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33755 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: X82169|g1041420 ATCC 33755 (T) = NCIMB 2197 = DSM 3755 isolate_name= RD-26 BASE COUNT 346 a 382 c 468 g 258 t 470 others ORIGIN 1 .......... .......... .......... ...GGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUUGGG AUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UC----AC) ACU------- -----|---C GUGGCGAAUA GNUCAGUAAC ACGUGGCCAA 181 ACUACCNUUC GGAANACAAU ACCCU--CG- G(-GAAA)CU GAGGCUAAUA GUGUAUC--C 241 CAUA--CCAC NAC-(UGGAA U--)-GAGU- GGUA-UGC-- NAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCG- --AAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUACGGG| UCAU(GAGA) 421 GUGA------ ---------- ----GAACCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCN(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGAUCC CAAGUN-CA- ---------- (----)---- -------CAG GC-AUAGC-G 601 CC--UGUGC| UUUUCGGCAC C--------- ------(CUA AGGC--)--- ---------- 661 ----GGUGCC AG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CCCAAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCGCAAG|-- UCCAUCGGG- AAAUCCACCU GC(UC-A)AC AGGUG-GGCG -CCCGGUAGA 841 AACUGCGU-G GCUU-GGGAC CGGAAGGCGC GACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCGCCGAUGG C(GAAA)GCA C-GUCGCGAG AACGGAUCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACAAU GUCUGCUA|G GUGUGGCUCC CAC-(U-AC- GA)--GUGGG UGCUG-UGCC 1081 GUAGG(GAAG )CCGCUAAGC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUG-GUAA UGACGAUCAG GUUGAUGA-C 1321 CUUAUC-CGA -GCCUCAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CCCUUAC-U UGC-CAGCAG 1441 UACC------ (GCGA-)--- -GGUAGCUG| GGGACA-GUA GGGGGACCGC CGUG(GC-UA 1501 A)CACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAAGGGU-U -CCUACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACUCGA UCGUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAU AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCG UG-C------ -----(---C 1801 AC-)------ -----GC-AC GUCGAAUCU- GGGCUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GNAA) UCUGCGGCUG GAUCACCU.. ....|..... ........~~ 1921 ~~~| // LOCUS Hr.sodomen 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halorubrum sodomense str. RD-26 ATCC 33755 (T). ACCESSION No information KEYWORDS No information. SOURCE Halorubrum sodomense str. RD-26 ATCC 33755 (T). ORGANISM Halorubrum sodomense. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33755 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: D13379|g532830 Former RDP Sids: Hb.sodomen ATCC 33755 (T) = NCIMB 2197 = DSM 3755 isolate_name= RD-26 NB: former name Halobacterium sodomense BASE COUNT 349 a 390 c 465 g 262 t 458 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAG--C-AU 61 UGCUAUUGGG AUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UC----AC) ACU------- -----|---C GUGGCGAAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUUC GGAACACAAU ACCCU--CG- G(-GAAA)CU GAGGCUAAUA GUGUAUC--C 241 CAUA--CCAC CAC-(UGGAA U--)-GAGU- GGUA-UGC-- CAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCG- --AAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUACGGG| UCAU(GAGA) 421 GUGA------ ---------- ----GAACCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGGAUUA 541 GG|GGGAUCC CAAGUG-CA- ---------- (----)---- -------CAG GC-AUAGC-G 601 CC--UGUGC| UUUUCGGCAC C--------- ------(CUA AGGC--)--- ---------- 661 ----GGUGCC AG-AAUAAGG GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CCCAAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCGCAAG|-- UCCAUCGGG- AAAUCCACCU GC(UC-A)AC AGGUG-GGCG -CCCGGUAGA 841 AACUGCGU-G GCUU-GGGAC CGGAAGGCGC GACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CC-CCGAUGG C(GAAA)GCA C-GUCGCGAG AACGGAUCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 CGUAAACAAU GUCUGCUA|G GUGUGGCUCC CAC-(U-AC- GA)--GUGGG UGCUG-UGCC 1081 GUAGG(-AAG )CCGCUAAGC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUGUG-GUAA UGACGAUCAG GUUGAUGA-C 1321 CUUAUC-CGA -GCCUCAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CCCUUAC-U UGC-CAGCAG 1441 UACC------ (GCGA-)--- -GGUAGCUG| GGGACAAGUA GGGGGACCGC CGUG(GC-UA 1501 A)CACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAAGGGU-U -CCUACUCC( GAAA)GGAGA CGGUAAUCUC 1621 AGAAACUCGA UCGUAGUUCG GAUUGUGGGC (UGCAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAU AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-A-GGC UG-C------ -----(---C 1801 AC-)------ -----GC-AC GUCGAAUCU- GG-CUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.3.4.3 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.4.3 HALOCOCCUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.4.3 HALOCOCCUS_SUBGROUP. ORGANISM 1.1.3.4.3 HALOCOCCUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hc.spBr3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halococcus sp. str. Br3. ACCESSION No information KEYWORDS No information. SOURCE Halococcus sp. str. Br3. ORGANISM Halococcus sp. REFERENCE 1 AUTHORS Denner,E., McGenity,T.J., Busse,H., Grant,W.D., Wanner,G. and Stan-Lotter,H. TITLE Halococcus salifodinae sp. nov., an archaeal isolate from an Austrian salt mine JOURNAL Int. J. Syst. Bacteriol. 44, 774-780 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z28379|g433565 geog_source= Cheshire, England biol_source= solution-mining brine isolate_name= Br3 BASE COUNT 52 a 52 c 72 g 35 t 1713 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAACCC G|GAGACGGA CU(CUGAGA- CAAG)AGUCC 481 GGGCCN(UAC G)GGGCGCAG CAGACGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 AG|GGGAUCC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUACA-G 601 UC--CUCGC| UUUUCGUGAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUCUC AG-AAUAAGG .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Hc.salifod 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halococcus salifodinae str. Blp DSM 8989 (T). ACCESSION No information KEYWORDS No information. SOURCE Halococcus salifodinae str. Blp DSM 8989 (T). ORGANISM Halococcus salifodinae. REFERENCE 1 AUTHORS Denner,E., McGenity,T.J., Busse,H., Grant,W.D., Wanner,G. and Stan-Lotter,H. TITLE Halococcus salifodinae sp. nov., an archaeal isolate from an Austrian salt mine JOURNAL Int. J. Syst. Bacteriol. 44, 774-780 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 8989 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z28387|g433566 Former RDP Sids: Hc.Blp geog_source= Austria biol_source= rock-salt from an Austrian salt mine isolate_name= Blp NB: former name Halococcus sp. BASE COUNT 52 a 52 c 72 g 35 t 1713 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAACCC G|GAGACGGA CU(CUGAGA- CAAG)AGUCC 481 GGGCCN(UAC G)GGGCGCAG CAGACGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 AG|GGGAUCC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUACA-G 601 UC--CUCGC| UUUUCGUGAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUCUC AG-AAUAAGG .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.4.4 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.4.4 HF.VOLCANII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.4.4 HF.VOLCANII_SUBGROUP. ORGANISM 1.1.3.4.4 HF.VOLCANII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hf.mediter 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloferax mediterranei. ACCESSION No information KEYWORDS No information. SOURCE Haloferax mediterranei. ORGANISM Haloferax mediterranei. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Nucleotide sequences of 16SrRNA encoding genes from halophilic archaea Halococcus morrhuae NRC16008 and Haloferax mediterranei ATCC33500. JOURNAL Nucleic Acids Res. 20, 3517-3517 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D11107 BASE COUNT 362 a 371 c 457 g 282 t 452 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGUC-AU 61 UGCUAUUGGG GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UC----AC) ACU------- -----|---C GUGGCGAAAA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGAGAACGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUA GUUCAUA--C 241 GGGA--GUCA UGC-(UUGAA U--)-GCCG- ACUC-CCC-- GAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAA-UAAU CGGUACGGG| UUGU(GAGA) 421 ACAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCA A)GUGCGAUA 541 AG|GGGACCC CAAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUCUCGAC U--------- ------(GUA AGGC--)--- ---------- 661 ----GGUCGA GG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCAAGUGAU GACCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 AUGAAGG|-- UUCAUCGGG- AAAUCCGCCA GC(UC-A)AC UGGCG-GGCG -UCCGGUGAA 841 AACCACAU-G GCUU-GGGAC CGGAAGGCUC GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCGAUGG C(GAAA)GCA C-CUCGAGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGGCACA GGC-(U-AC- GA)--GCCUG UCUUG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCUC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUACA-GUAA UGACGGUCAG GUUGAUGA-C 1321 CUUACCACGA CGCUGUAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUUCUAA-U UGC-CAGCAA 1441 CAGU------ (UUCG-)--- -ACUGGUUG| GGUACA-UUA GAAGGACUGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGAGC UGGGCUACAC 1561 GCGGGCUACA AUGGUCAAGA CAAUGGGU-U -GCUAUCUC( GAAA)GAGAA CGCUAAUCUC 1621 CUAAACUUGA UCGUAGUUCG GAUUGAGGAC (UGAAACUC) GUCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCAUU(UCAC AAG)AGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCC AC-C------ -----(--AC 1801 AC-)------ -----GG-UG GUCGAAUCU- GG-CUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hf.denitrf 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloferax denitrificans. ACCESSION No information KEYWORDS No information. SOURCE Haloferax denitrificans. ORGANISM Haloferax denitrificans. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14128|g532834 BASE COUNT 356 a 369 c 464 g 278 t 457 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGUC-AU 61 UGCUAUUGGG GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UC----AU) ACU------- -----|---C GUGGCGAAAA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGAGAACGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUA GUUCAUA--C 241 GGGA--GUCA UGC-(UGGAA U--)-GCCG- ACUC-CCC-- GAA-ACGC-- ---------- 301 (--UCAG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAA A)GUCGAUUA 541 AG|GGGACCC CAAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUCUCGAC U--------- ------(GUA AGGC--)--- ---------- 661 ----GGUCGA GG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCAAGUGAU GACCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 ACGAAGG|-- UUCAUCGGG- AAAUCCGCCA GC(UC-A)AC UGGCG-GGCG -UCCGGUGAA 841 AACCACGU-G GCUU-GGGAC CGGAAGGCUC GAGG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCGAUGG C(GAAA)GCA C-CUCGAGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGGCACA GGC-(U-AC- GA)--GCCUG UGU-G-UGCC 1081 GUAGG(-AAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAN-GGGNU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCUC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUACA-GUGA UGACGAUCAG GUUGAUGA-C 1321 CUUAUCACGA CGCUGUAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUUCUAA-U UGC-CAGCAG 1441 CAGU------ (UUCG-)--- -ACUGGCUG| GGUACA-UUA GAAGGACUGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGAGC UGGGCUACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGU-U -GCUAUCUC( GAAA)GAGAA CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCAUU(UCAA UAG)AGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCC AC-------- -----(--AC 1801 AC-)------ -----GG-UG GUCGAAUCU- GG-CUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hf.volcani 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloferax volcanii str. DS-2 ATCC 29605. ACCESSION No information KEYWORDS No information. SOURCE Haloferax volcanii str. DS-2 ATCC 29605. ORGANISM Haloferax volcanii. REFERENCE 1 AUTHORS Gupta,R., Lanter,J.M. and Woese,C.R. TITLE Sequence of the 16S ribosomal RNA from Halobacterium volcanii, an archaebacterium JOURNAL Science 221, 656-659 (1983) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29605 Sequence information (bases 1 to 1924) Corresponding GenBank entry: K00421 ATCC 29605 = DSM 3757 isolate_name= DS-2 BASE COUNT 359 a 373 c 466 g 276 t 450 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGUC-AU 61 UGCUAUUGGG GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UC----AU) ACU------- -----|---C GUGGCGAAAA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGAGAACGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUA GUUCAUA--C 241 GGGA--GUCA UGC-(UGGAA U--)-GCCG- ACUC-CCC-- GAA-ACGC-- ---------- 301 (--UCAG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCA A)GUGCGAUA 541 AG|GGGACCC CAAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUCUCGAC C--------- ------(GUA AGGC--)--- ---------- 661 ----GGUCGA GG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCAAGUGAU GACCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 ACGAAGG|-- UUCAUCGGG- AAAUCCGCCA GC(UC-A)AC UGGCG-GGCG -UCCGGUGAA 841 AACCACGU-G GCUU-GGGAC CGGAAGGCUC GAGG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCACCGAUGG C(GAAA)GCA C-CUCGAGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGACACA GGC-(U-AC- GA)--GCCUG UGUUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCUC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUACA-GUGA UGACGAUCAG GUUGAUGA-C 1321 CUUAUCACGA CGCUGUAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUUCUAA-U UGC-CAGCAG 1441 CAGU------ (UUCG-)--- -ACUGGCUG| GGUACA-UUA GAAGGACUGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGAGC UGGGCUACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGU-U -GCUAUCUC( GAAA)GAGAA CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCAUU(UCAA UAG)AGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCC AC-C------ -----(--AC 1801 AC-)------ -----GG-UG GUCGAAUCU- GGGCUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC UG~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hf.gibbons 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloferax gibbonsii. ACCESSION No information KEYWORDS No information. SOURCE Haloferax gibbonsii. ORGANISM Haloferax gibbonsii. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D13378|g532835 BASE COUNT 357 a 366 c 460 g 284 t 457 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGUC-AU 61 UGCUAUUGGG GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UC----AU) ACU------- -----|---C GUGGCGAAAA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGAGAACGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUA GUUCAUA--C 241 GGGA--GUCA UGC-(UGGAA U--)-GCCG- ACUC-CCC-- GAA-ACGC-- ---------- 301 (--UCAG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCA -)GUGAAUUA 541 AG|GGGACCC CAAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUCACGAC U--------- ------(GUA AGGC--)--- ---------- 661 ----GGUCGU GG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCAAGUGAU GACCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 AUGAAGG|-- UUCAUCGGG- AAAUCCGCCA GC(UC-A)AC UGGCG-GGCG -UCCGGUGAA 841 AACCACAU-G GCUU-GGGAC CGGAAGGCUC GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCACCGAUGG C(GAAA)GCA C-CUCGAGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGACACA GGC-(U-AC- GA)--GCCUG UGUUUGUGCC 1081 GUAGG(-AAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UANN-GGNNU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCUC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUAUA-GUGA UGACGAUCAG GUUGAUGA-C 1321 CUUAUCACGA UGCUAUAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUUCUAA-U UGC-CAGCAG 1441 CAGUU----- (UUC--)--- GACUGGCUG| GGUACA-UUA GAAGGACUGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGAGC UGGGCUACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGU-U -GCUAUCUC( GAAA)GAGAA CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCAUU(UCAA UAG)AGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCC AC-------- -----(--AC 1801 AC-)------ -----GG-UG GUCGAAUCU- GG-CUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hf.sp.Aa22 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloferax sp. str. Aa 2.2. ACCESSION No information KEYWORDS No information. SOURCE Haloferax sp. str. Aa 2.2. ORGANISM Haloferax sp. REFERENCE 1 AUTHORS Holmes,M.L. and Dyall-Smith,M.L. TITLE A plasmid vector with a selectable marker for halophilic archaebacteria JOURNAL J. Bacteriol. 172, 756-761 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M33805 (bases 1 to 539) legacy_attribute= biovar:PHENON K isolate_name= Aa 2.2 BASE COUNT 301 a 300 c 370 g 216 t 737 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .....GAAAA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGAGAACGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUA GUUCAUA--C 241 GGGA--GUCA UGC-(UGGAA U--)-GCCG- ACUC-CCC-- GAA-ACGC-- ---------- 301 (--UCAG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCA A)GUGCGAUA 541 AG|GGGACCC CAAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUCACGAC U--------- ------(GUA AGGC--)--- ---------- 661 ----GGUCGU GG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 AC....|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..UAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCACCGAUGG C(GAAA)GCA C-CUCGAGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGACACA GGC-(U-AC- GA)--GCCUG UGUUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGC...... .......... .......... .......... .....(.CUC 1201 AACG)CCGGA CA--UCUCAC CAGCUC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CUACA-GUGA UGACGAUCAG GUUGAUGA-C 1321 CUUAUCACGA CGCUGUAGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUUCUAA-U UGC-CAGCAG 1441 CAGU------ (UUCG-)--- -ACUGGCUG| GGUACA-UUA GAAGGACUGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGAGC UGGGCUACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGU-U -GCUAUCUC( GAAA)GAGAA CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCAUU(UCAA UAG)AGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCC AC-C------ -----(--AC 1801 AC-)------ -----GG-UG GUCGAAUCU- GG-CUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.4.5 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.4.5 HB.SALINARIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.4.5 HB.SALINARIUM_SUBGROUP. ORGANISM 1.1.3.4.5 HB.SALINARIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hb.halobiu 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halobacterium halobium str. R1. ACCESSION No information KEYWORDS No information. SOURCE Halobacterium halobium str. R1. ORGANISM Halobacterium halobium. REFERENCE 1 AUTHORS Mankin,A.S. and Kagramanova,V.K. TITLE operon of Halobacterium halobium: secondary structure of the archaebacterial 23S rRNA Complete nucleotide sequence of the single ribosomal RNA JOURNAL Mol. Gen. Genet. 202, 152-161 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X03407 isolate_name= R1 NB: This ref. DOES include the 16S seq. BASE COUNT 342 a 375 c 484 g 272 t 451 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUUGUGCG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C GCAGCGGAAA GCUCAGUAAC ACGUGGCCAA 181 GCUACCCUGU GGACGGGAAU ACUCU--CG- G(-GAAA)CU GAGGCUAAUC CCCGAUA--A 241 CGCU--UUGC UCC-(UGGAA G--)-GGGC- AAAG-CCG-- GAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCA- --CAGGAUGC |GGCUGCGG| UCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCCA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGUAC(GAA A)GUGCGAUA 541 AG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AAG GC-AUAGA-G 601 CC--UUCAC| UUUUGUACAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUGCA CG-AAUAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCU 781 GAACAAG|-- UCCGUUGGG- AAAUCUGUCC GC(UU-A)AC GGGCA-GGCG -UCCAGCGGA 841 AACUGUUC-A GCUU-GGGAC CGGAAGACCU GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCGCCGGUGG C(GAAA)GCG C-CUCAGGAG AACGGAUCCG 961 ACAGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GUCCGCUA|G GUGUGGCGCA GGC-(U-AC- GA)--GCCUG CGCUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GGAC|C|GCC UGGGAAGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGAGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACGGUCAG GUUGAUGA-C 1321 CUUACC-CGA GGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUCCUAA-U UGC-CAGCGG 1441 UACCC----- (UUU--)--- GGGUAGCUG| GGUACA-UUA GGUGGACUGC CGCU(GC-CA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGA-A -GCCACUCC( GAGA)GGAGG CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG CAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA UCACCCGAGU GGGGUUC-GG AUGA-G-GCC GG-C------ -----(--AU 1801 GC-)------ -----GC-UG GUCAAAUCU- GGGCUC-CGC AAGGGGGAUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hb.halobi3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halobacterium halobium str. R1. ACCESSION No information KEYWORDS No information. SOURCE Halobacterium halobium str. R1. ORGANISM Halobacterium halobium. REFERENCE 1 AUTHORS Mankin,A.S., Kagramanova,V.K., Teterina,N.L., Rubtsov,P.M., Belova,E.N., Kopylov,A.M., Baratova,L.A. and Bogdanov,A.A. TITLE The nucleotide sequence of the gene coding for the 16S rRNA from the archaebacterium Halobacterium halobium JOURNAL Gene 37, 181-189 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M11583 isolate_name= R1 BASE COUNT 341 a 376 c 484 g 272 t 451 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUUGUGCG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C GCAGCGGAAA GCUCAGUAAC ACGUGGCCAA 181 GCUACCCUGU GGACGGGAAU ACUCU--CG- G(-GAAA)CU GAGGCUAAUC CCCGAUA--A 241 CGCU--UUGC UCC-(UGGAA G--)-GGGC- AAAG-CCG-- GAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCA- --CAGGAUGC |GGCUGCGG| UCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCCA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGUAC(GAA A)GUGCGAUA 541 AG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AAG GC-AUAGA-G 601 CC--UUCAC| UUUUGUACAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUGCA CG-AAUAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCU 781 GAACAAG|-- UCCGUUGGG- AAAUCUGUCC GC(UU-A)AC GGGCA-GGCG -UCCAGCGGA 841 AACUGUUC-A GCUU-GGGAC CGGAAGACCU GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCGCCGGUGG C(GAAA)GCG C-CUCAGGAG AACGGAUCCG 961 ACAGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GUCCGCUA|G GUGUGGCGCA GGC-(U-AC- GA)--GCCUG CGCUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GGAC|C|GCC UGGGAAGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACGGUCAG GUUGAUGA-C 1321 CUUACC-CGA GGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUCCUAA-U UGC-CAGCGG 1441 UACCC----- (UUU--)--- GGGUAGCUG| GGUACA-UUA GGUGGACUGC CGCU(GC-CA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGA-A -GCCACUCC( GAGA)GGAGG CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG CAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA UCACCCGAGU GGGGUUC-GG AUGA-G-GCC GG-C------ -----(--AU 1801 GC-)------ -----GC-UG GUCAAAUCU- GGGCUC-CGC AAGGGGGAUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hb.halobi2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halobacterium halobium.. ACCESSION No information KEYWORDS No information. SOURCE Halobacterium halobium. ORGANISM Halobacterium halobium. REFERENCE 1 AUTHORS Kagramanova,V.K., Mankin,A.S., Teterina,N.L., Rubtsov,P.M., Kopylov,A.M., Baratova,L.A. and Bogdanov,A.A. TITLE The nucleotide sequence of the gene coding for the 16S rRNA from archaebacterium Halobacterium halobium JOURNAL Bioorg. Khim. 11, 516-522 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M38280 BASE COUNT 341 a 377 c 483 g 272 t 451 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUUGUGCG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C GCAGCGGAAA GCUCAGUAAC ACGUGGCCAA 181 GCUACCCUGU GGACGGGAAU ACUCU--CG- G(-GAAA)CU GAGGCUAAUC CCCGAUA--A 241 CGCU--UUGC UCC-(UGGAA G--)-GGGC- AAAG-CCG-- GAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCA- --CAGGAUGC |GGCUGCGG| UCCAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCCA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGUAC(GAA A)GUGCGAUA 541 AG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AAG GC-AUAGA-G 601 CC--UUCAC| UUUUGUACAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUGCA CG-AAUAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCU 781 GAACAAG|-- UCCGUUGGG- AAAUCUGUCC GC(UU-A)AC GGGCA-GGCG -UCCAGCGGA 841 AACUGUUC-A GCUU-GGGAC CGGAAGACCU GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCGCCGGUGG C(GAAA)GCG C-CUCAGGAG AACGGAUCCG 961 ACAGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GUCCGCUA|G GUGUGGCGCA GGC-(U-AC- GA)--GCCUG CGCUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GGAC|C|GCC UGGGAAGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACGGUCAG GUUGAUGA-C 1321 CUUACC-CGA GGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUCCUAA-U UGC-CAGCGG 1441 UACCC----- (UUU--)--- GGGUAGCUG| GGUACA-UUA GGUGGACUGC CGCU(GC-CA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGA-A -GCCACUCC( GAGA)GGAGG CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG CAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA UCACCCGAGU GGGGUUC-GG AUGA-G-GCC GG-C------ -----(--AU 1801 GC-)------ -----GC-UG GUCAAAUCU- GGGCUC-CGC AAGGGGGAUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hb.spY12 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halobacterium sp. str. Y12. ACCESSION No information KEYWORDS No information. SOURCE Halobacterium sp. str. Y12. ORGANISM Halobacterium sp. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14127|g532829 isolate_name= Y12 BASE COUNT 342 a 378 c 477 g 272 t 455 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UCCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUUGUCCG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C GCAGCGGAAA GCUCAGUAAC ACGUGGCCAA 181 GCUACCCUGU GGACGGGAAU ACUCU--CG- G(-GAAA)CU GAGGCUAAUC CCCGAUA--A 241 CGCU--UUGC UCC-(UGGAA G--)-GGGC- AAAG-CCG-- GAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCA- --CAGGAUGC |GGCUGCGG| UCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCCA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGUAC(GAA A)GUCCGAUA 541 AG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AAG GC-AUAGA-G 601 CC--UUCAC| UUUUGUACAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUGCA CG-AAUAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCU 781 GAACAAG|-- UCCGUUGGG- AAAUCUGUCC GC(UU-A)AC GGGCA-GGCG -UCCAGCGGA 841 AACUGUUC-A GCUU-GGGAC CGGAAGACCU GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCGCCGGUGG C(GAAA)GCG C-CUCAGGAG AACGGAUCCG 961 ACAGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GUCCGCUA|G GUGUGGCGCA GGC-(U-AC- GA)--GCCUC GUNNN-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GGAC|C|GCC UGGGAAGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACGGUCAG GUUGAUGA-C 1321 CUUACCCG-A GGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUCCUAA-U UGC-CAGCAG 1441 UACCC----- (UUU--)--- GGGUAGCUG| GGUACA-UUA GGUGGACUGC CGCU(GC-CA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGA-A -GCCACUCC( GAGA)GGAGG CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG CAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA UCACCCGAGU GGGGUUC-GG AUGA-G-GCC GG-C------ -----(--AU 1801 GC-)------ -----GC-UG GUCAAAUCU- GG-CUC-CGC AAGGGGGAUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hb.cutirub 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halobacterium cutirubrum str. clone lambda-Hc4. ACCESSION No information KEYWORDS No information. SOURCE Halobacterium cutirubrum str. clone lambda-Hc4. ORGANISM Halobacterium cutirubrum. REFERENCE 1 AUTHORS Hui,I. and Dennis,P.P. TITLE Characterization of the ribosomal RNA gene clusters in Halobacterium cutirubrum JOURNAL J. Biol. Chem. 260, 899-906 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: K02971 isolate_name= clone lambda-Hc4 BASE COUNT 342 a 375 c 483 g 272 t 452 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUUGUGCG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C GCAGCGGAAA GCUCAGUAAC ACGUGGCCAA 181 GCUACCCUGU GGACGGGAAU ACUCU--CG- G(-GAAA)CU GAGGCUAAUC CCCGAUA--A 241 CGCU--UUGC UCC-(UGGAA G--)-GGGC- AAAG-CCG-- GAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCA- --CAGGAUGC |GGCUGCGG| UCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCCA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGUAC(GAA A)GUGCGAUA 541 AG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AAG GC-AUAGA-G 601 CC--UUCAC| UUUUGUACAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUGCA CG-AAUAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCU 781 GAACAAG|-- UCCGUUGGG- AAAUCUGUCC GC(UU-A)AC GGGCA-GGCG -UCCAGCGGA 841 AACUGUUC-A GCUU-GGGAC CGGAAGACCU GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCGCCGGUGG C(GAAA)GCG C-CUCAGGAG AACGGAUCCG 961 ACAGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GUCCGCUA|G GUGUGGCGCA GGC-(U-AC- GA)--GCCUG CGCUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GGAC|C|GCC UGGGAAGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACGGUCAG GUUGAUGA-C 1321 CUUACCCGGA GGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUCCUAA-U UGC-CAGCAG 1441 UACC------ (UUUG-)--- -GGUAGCUG| GGUACA-UUA GGUGGACUGC CGCU(GC-CA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGA-A -GCCACUCC( GAGA)GGAGG CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG CAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA UCACCCGAGU GGGGUUC-GG AUGA-G-GCC GG-C------ -----(--AU 1801 GC-)------ -----GC-UG GUCAAAUCU- GG-CUC-CGC AAGGGGGAUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hb.salinar 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halobacterium salinarium.. ACCESSION No information KEYWORDS No information. SOURCE Halobacterium salinarium. ORGANISM Halobacterium salinarium. REFERENCE 1 AUTHORS Jurgens,G.N. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X92978|g1064906 BASE COUNT 202 a 211 c 286 g 162 t 1063 others ORIGIN 1 .......... .......... .........U UCCGGU(UGA )UCCU|-GCC GGA-CGC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUUGUGCG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C GCAGCGGAAA GCUCAGUAAC ACGUGGCCAA 181 GCUACCCUGU GGACGGGAAU ACUCU--CG- G(-GAAA)CU GAGGCUAAUC CCCGAUA--A 241 CGCU--UUGC UCC-(UGGAA G--)-GG-C- AAAG-CCG-- GAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCA- --CAGGAUGC |GGCUGCGG| UCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCCAUUAAU CGGWWCGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGA AU(CUGAGA- CAAG)AUUCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCGAA AACCUUUACA CUGUAC(GAA A)GUGCGAUA 541 AG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AAG GC-AUAGA-G 601 CC--UUCAC| UUUUGUACAC C--------- ------(GUA AGGK--)--- ---------- 661 ----KGUGCA CG-AAUAAGG ACUGGGCA-A GACCG-GUG( YCAUUGCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCU 781 GAACAAG|-- UCCGUUGGG- AAAUCUGUCC GC(UU-A)AC GGGCA-GGCG -UCCAGCGGA 841 AACUGUUC-A GCUU-GGGAC CGGAAGACCU GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CS-CCGGUG- C(G-AA)GCG C-CUCAGGAG AACGGAUCCG 961 ACAGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GUCCGCUA|G GUUGUUNGCA GGC-(U-AC- GA)--GCCUG CGCUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GGAC|C|GCC UGGGAAGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGG... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.4.6 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.4.6 NATRONOCOCCUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.4.6 NATRONOCOCCUS_SUBGROUP. ORGANISM 1.1.3.4.6 NATRONOCOCCUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hr.trapani 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halorubrum trapanicum. ACCESSION No information KEYWORDS No information. SOURCE Halorubrum trapanicum. ORGANISM Halorubrum trapanicum. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14125|g532828 Former RDP Sids: Hb.trapani NB: former name Halobacterium trapanicum BASE COUNT 349 a 376 c 476 g 271 t 452 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGUC-AU 61 UGCUAUUGGA GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUAGCAGAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAU GGAUCCAAAU AACCU--CG- G(-GAAA)CU GAGGCUAAUG UGGAAUA--A 241 CGUU--CAUC GCC-(UGGAG U--)-GGCA- CGAA-CGC-- GAA-ACGU-- ---------- 301 (--UACG--- )------|-- --GC-GCCA- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCCA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCG A)GUGCGAUA 541 AG|GGGACUC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUCACGAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUCGU AG-AAUAAGU GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CACGAGUGAU GACCGCUAUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 ACGCAAG|-- UCUAUCGGGG AAAAUUCCGC CC(UU-A)AC GCNCG-GCCG -UCCGGUGGA 841 AACUGCGU-G GCUU-GGGAC CGGAAGACCA GAGG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCACCGGUGG C(GAAA)GCG C-CUCUGGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUC GGGUCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCGAGC 1021 UGUAAACGAU GUCUGCUA|G GUGUGGCACA GGC-(U-AC- GA)--GCCUG UGUUG-UGCC 1081 GUAGG(-AAG )CCGUGAAGC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAAUGUGCAG UGAAAGUCAG GUUGAUGA-C 1321 CUUACU-GGA -GCCAUUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUCCUAA-U UGC-CAGCAA 1441 CACC------ (CUCGU)--- -GGUGGUUG| GGUACA-UUA GGAGGACUGC CAGU(GC-CA 1501 A)ACUGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCGACAC 1561 GCGGGCUACA AUGGCCGAGA CAGUGGGA-U -GCAACCCC( GAAA)GGGGA CGCUAAUCUC 1621 CGAAACUCGG UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGCC(UCAG AAG)GGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC GA-CG----- -----(--CA 1801 A--)------ ----CGU-CG GUCGAAUCU- GG-CUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS str.L-11 1924 bp RNA RNA 02-JUL-1998 DEFINITION str. L-11. str. L-11. ACCESSION No information KEYWORDS No information. SOURCE str. L-11. str. L-11. ORGANISM str. L-11. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14126|g532833 isolate_name= L-11 BASE COUNT 347 a 372 c 476 g 273 t 456 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGUC-AU 61 UGCUAUUGGA GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UC----AG) ACU------- -----|---C GUAGCAGAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAU GGAUCCAAAU AACCU--CG- G(-GAAA)CU GAGGCUAAUG UGGAAUA--G 241 CGUU--CAUC GCC-(UGGAG U--)-GGCA- CGAA-CGC-- GAA-ACGU-- ---------- 301 (--UACG--- )------|-- --GC-GCCA- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCCA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCG A)GUGCGAUA 541 AG|GGGACUC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUCACGAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUCGU AG-AAUAAGU GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CACGAGUGAU GACCGCUAUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 AUGCAAG|-- UCUAUCGGG- AAAAUUCCGC -C(UU-A)AC GCGCG-GGCG -UCCGGUGGA 841 AACUGCGU-G GCUU-GGGAC CGGAAGACCA GAGG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCACCGGUGG C(GAAA)GCG C-CUCUGGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUC GGGUCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCGAGC 1021 UGUAAACGAU GUCUGCUA|G GUGUGGCACA GGC-(U-AC- GA)--GCCUG UCGUG-UGCC 1081 GUAGG(-AAG )CCGUGAAGC AGAC|C|GCC UGGGANGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CCGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAAUGUGCAG UGAAAGUCAG GUUGAUGA-C 1321 CUUACU-GGA -GCCAUUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUCCUAA-U UGC-CAGCAA 1441 CACC------ (CUUGU)--- -GGUGGUUG| GGUACA-UUA GGAGGACUGC CAGU(GC-CA 1501 A)ACUGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCGACAC 1561 GCGGGCUACA AUGGCCGAGA CAGUGGGA-U -GCAACCCC( GAAA)GGGGA CGCUAAUCUC 1621 CGAAACUCGG UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGCC(UCAG AAG)GGC-CG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUUAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCG AC-G------ -----(--CA 1801 AC-)------ -----GU-CG GUUGAAUCU- GG-CUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Ntr.magadi 1924 bp RNA RNA 02-JUL-1998 DEFINITION Natrialba magadii subsp. was Natronobacterium magadii. ACCESSION No information KEYWORDS No information. SOURCE Natrialba magadii subsp. was Natronobacterium magadii. ORGANISM Natrialba magadii. REFERENCE 1 AUTHORS Lodwick,D., Ross,H.N.M., Walker,J.A. and Almond,J.W. TITLE haloalkaliphilic archaeon (Archaebacterium) Natrobacterium magadii, and the phylogeny of halobacteria Nucleotide sequence of the 16S ribosomal RNA gene from the JOURNAL Syst. Appl. Microbiol. 14, 352-357 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X72495 BASE COUNT 347 a 368 c 475 g 276 t 458 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGUC-AU 61 UGCUAUUGGA GUCCGAUUUA GCCAUGCUA- --GUUGUACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUAGCAGAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAU GGAUCCAGAC AACCU--C-- G(-GAAA)CU GAGGCUAAUC UGGAAUA--C 241 GACU--CUCA UCC-(UGGAG U--)-GGAG- AGAG-UCC-- GAA-AUGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCA- --UAGGAUGU |GGC--CGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCC A)GUGCGAUA 541 AG|GGGACUC CAAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUUGCGAC C--------- ------(GUA AGGUU-)--- ---------- 661 ----GGUCGC GG-AAUAAGU GCUGGGCA-A GACCG-GU-( CCA--GCCGC CGCGGUAA)- 721 ACCGG-|CAG CACGA--GAU GACCGGUGUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCGCAAG|-- UCUAUCGGG- AAAUCUCUUC GC(UU-A)AC GGAGA-GGCG AUCCGGUGGA 841 AA-AAUGU-G GCUU-GGGAC CGGAAGACCA GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCACCGGUGG C(GAAA)GCG C-CUCUGGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUC GGGUCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCGAGC 1021 UGUAAACGAU GUCUGCUA|G GUGUGACACA GGC-(U-AC- GA)--GCCUG UGUUG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAAUA-GUAA UGACGGUCAG UGUGAUGA-G 1321 CUUACCUGGA GGCUAUUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCU |CUCCUAA-U UGC-CAGCAA 1441 CGAC------ (CUUU-)--- -GGUGGUUG| GGUACA-UUA GGAGGACUGC CGCU(GC-CA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGCCACGA CAGUGGGA-U -GCAACGCC( GAAA)GGCGA CGCUAAUCUC 1621 CUAAACGUGG UCGUACUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGCC(UCAG AAG)GGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC CG-G------ -----(--UU 1801 UA-)------ -----CC-GG GUCGAAUCU- GG-CUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC A~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS str.B1T 1924 bp RNA RNA 02-JUL-1998 DEFINITION str. B1T. str. B1T. ACCESSION No information KEYWORDS No information. SOURCE str. B1T. str. B1T. ORGANISM str. B1T. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14124|g532832 isolate_name= B1T BASE COUNT 342 a 374 c 478 g 273 t 457 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGUC-AU 61 UGCUAUUGGA GUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UC----AG) ACU------- -----|---C GUGGCAGAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAU AGAUCCGGCC AACCU--CG- G(-GAAA)CU GAGGCUAAUC CGGAAUA--A 241 CGCU--UUCA GCC-(UGGAG U--)-GGCG- AGAG-CGA-- GAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCUA- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAG-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCG A)GUCGAUUA 541 AG|GGGACUC CAGGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUCUCGAC C--------- ------(GUA GGGA--)--- ---------- 661 ----GGUCGA GG-AACAAGU GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CACAAGUGAU GACCGCUGUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 AGACAAG|-- UUCAUCGGG- AAAUCUG-UC GC(CU-A)AC GCACA-GGCG -UCCGGUGGA 841 AACUGCCU-G GCUU-GGGAC CGGAAGACCA GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCACCGGUGG C(GAAA)GCG C-CUCUGGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUC GGGUCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCGAGC 1021 UGUAAACGAU GUCUGCUA|G GUGUGACACA GGC-(U-AC- GA)--GCCUG UGUUU-GUGC 1081 CGUAG(GAAG )CCGUGAAGC AGAC|C|GCC UGGGNNGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUGUGCAG UGACAGUCAG UGUGAUGA-G 1321 CUUACU-UGA -GCCACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGA- |CCCUUAA-U UGC-CAGCAA 1441 CACC------ (CUUGU)--- -GGUGGUUG| GGUACA-UUA AGAGGACUGC CAGU(GC-CA 1501 A)ACUGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCGACAC 1561 GCGGGCUACA AUGGUCGAGA CAGUGGGA-U -GCAACGCC( GAAA)GGCGA CGCUAAUCUC 1621 CGAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGCC(UCAG AAG)GGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC CG-G------ -----(--UU 1801 U--)------ -----CC-GG GUCGAAUCU- GG-CUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS str.172P1 1924 bp RNA RNA 02-JUL-1998 DEFINITION str. 172P1. str. 172P1. ACCESSION No information KEYWORDS No information. SOURCE str. 172P1. str. 172P1. ORGANISM str. 172P1. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14123|g532831 isolate_name= 172P1 BASE COUNT 346 a 370 c 480 g 273 t 455 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGUC-AU 61 UGCUAUUGGA GUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUGGCAGAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAU AGAUCCGGCC AACCU--CG- G(-GAAA)CU GAGGCUAAUC CGGAAUA--A 241 CGCU--UUCA GCC-(UGGAG U--)-GGCG- AGAG-CGU-- GAA-ACGU-- ---------- 301 (---CCG--- )------|-- --GC-GCUA- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAG-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCG A)GUCGAUUA 541 AG|GGGACUC CAGGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 UC--CUCGC| UUUUCUCAAC C--------- ------(GUA GGGA--)--- ---------- 661 ----GGUUGA GG-AACAAGU GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CACAAGUGAU GACCGCUGUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 AGACAAG|-- UUCAUCGGG- AAAUUCGCGC GC(CU-A)AC GCGCA-GGCG -UCCGGUGGA 841 AACUGCCU-G GCUU-GGGAC CGGAAGACCA GAGG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUAGACGGA CCACCGGUGG C(GAAA)GCG C-CUCUGGAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUC GGGUUACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCGAGC 1021 UGUAAACGAU GUCUGCUA|G GUGUAACACA GGC-(U-AC- GA)--GCCUG UGUUG-UCCC 1081 GUAGG(GAAG )CCGUGAAGC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUGUGCAG UGACGGUCAG UGUGAUGA-G 1321 CUUACC-UGA -GCCACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGAA |CCCUUAA-U UGC-CAGCAA 1441 CAAC------ (CUUGU)--- -GGUGGUUG| GGUACA-UUA AGAGGACUGC CAGU(GC-CA 1501 A)ACUGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCGACAC 1561 GCGGGCUACA AUGGUCGAGA CAGUGGGA-U -GCAACGCC( GAAA)GGCGA CGCUAAUCUC 1621 CUAAACUCGA UCGUAGUUCG GAUUGAGGGC (UGAAACUC) GCCCUCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGCC(UCAG AAG)GGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUNAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC -G-G------ -----(--UU 1801 C--)------ -----CC-GG GUCGAAUCU- GGGCUGGCG- AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Ntc.occult 1924 bp RNA RNA 02-JUL-1998 DEFINITION Natronococcus occultus. ACCESSION No information KEYWORDS No information. SOURCE Natronococcus occultus. ORGANISM Natronococcus occultus. REFERENCE 1 AUTHORS McGenity,T.J. and Grant,W.D. TITLE The haloalkaliphilic archaeon (archaebacterium) Natronococcus occultus represents a distinct lineage within the Halobacteriales, most closely related to the other haloalkaliphilic lineage (Natronobacterium) JOURNAL Syst. Appl. Microbiol. 16, 239-243 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z28378|g433599 ATCC 43101 = NCIMB 2192 BASE COUNT 338 a 381 c 480 g 258 t 467 others ORIGIN 1 .......... .......... .......... ...GGU(UGA )UCCU|-GCC GGAGGCN-AU 61 UGCUAUUGGA GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UC----AG) ACU------- -----|---C GUAGCAGAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUCU GGAGGGGACC AACCU--CG- G(-GAAA)CU GAGGCUAAUU CCCCAUA--C 241 CGCU--CGAC GCC-(UGGAA C--)-UGCG- CGAG-CCC-- GAA-ACGC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCA- --GAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAG-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCN(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCC A)GUGCGAUA 541 AG|GGGACUC CAAGUG-CG- ---------- (----)---- -------AGG GC-AUAGA-G 601 CC--CUCGC| UUUUCUGCAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUGCA GG-AACAAGU GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CACGAGUGAU GGCCGCUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 AGGCAAG|-- UCCAUCGGG- AAAUCUCCCC GC(CU-A)AC GGGGA-GGCG -UCCGGUGGA 841 AACUGCCU-G GCUU-GGGAC CGGAAGAUCC AGAG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCCGUAAU CCUGGACGGA CCGCCGGUGG C(GAAA)GCG C-UCUGGAAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUC GGGUCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCGAGC 1021 UGUAAACGAU GUCUGCUA|G GUGUGNCACA GGC-(U-AC- GA)--GCCUG UGGUG-UGCC 1081 GCAGG(GAAG )CCGUGAAGC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCN -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GGAG UGACGGUCAG UGUGAUGA-G 1321 CUUACC-AGA -CCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUCCUAA-U UGC-CAGCAA 1441 CACC------ (CUUGU)--- -GGUGGUUG| GGUACA-UUA GGAGGACUGC CAGU(GC-CA 1501 A)ACUGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAGUGGGA-U -GCAACCCC( GAAA)GGGGG CGCUAAUCUC 1621 CGAAACUCGA UCGUAGUUCG GAUUGCGGAC (UGAAACUC) GUCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCCGU(UCAG AAG)ACGGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCN-GG AUGA-G-GCC CC-U------ -----(---U 1801 CU-)------ -----GG-GG GUCGAAUCU- GGGCUU-CGC AAGNNGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUC~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Ntc.amylyt 1924 bp RNA RNA 02-JUL-1998 DEFINITION Natronococcus amylolyticus str. Ah-36 JCM 9655 (T). ACCESSION No information KEYWORDS No information. SOURCE Natronococcus amylolyticus str. Ah-36 JCM 9655 (T). ORGANISM Natronococcus amylolyticus. REFERENCE 1 AUTHORS Kanal,H., Kobayashi,T., Aono,R. and Kudo,T. TITLE Natronococcus amylolyticus sp. nov., a haloalkaliphilic archaeon JOURNAL Int. J. Syst. Bacteriol. 45, 762-766 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 9655 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: D43628|g1109639 (bases 230 to 1703) isolate_name= Ah-36 BASE COUNT 347 a 377 c 482 g 268 t 450 others ORIGIN 1 .......... .......... ........AC UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUUGGA GUCCGAUUUA GCCAUGCUA- --GUUGUACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUAGCAGAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUCU GGAGCGCGAC AACCU--CG- G(-GAAA)CU GAGGCUAAUC GUGCAUA--C 241 CGCU--CUCA UGC-(UGGAA Guu)-GCAG- AGAG-CUC-- GAA-AUGC-- ---------- 301 (--CCCG--- )------|-- --GC-GCCA- --GAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAG-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCC A)GUGCGAUA 541 AG|GGGACUC CAAGUG-CG- ---------- (----)---- -------AGG GC-AUAGA-G 601 CC--CUCGC| UUUUCACGAC C--------- ------(GUA AGGA--)--- ---------- 661 ----GGUCGU AG-AAUAAGU GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CACGAGUGAU GGCCGCUCUU AUUGGGC|CU AAAGCGUCCG UAGCUG|GCC 781 GCGCAAG|-- UCCAUCGGG- AAAUCCGCAC GC(UU-A)AC GUGCG-GGCG -UCCGGUGGA 841 AACUGCGU-G GCUU-GGGAC CGGAAGAUCC AGAG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCGGUGG C(GAAA)GCG C-UCUGGAAA GACGGAUCCG 961 ACGGUGAGGG ACGAAAGCUC GGGUCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCGAGC 1021 UGUAAACGAU GUCUGCUA|G GUGUGCCACA GGC-(U-AC- GA)--GCCUG UGGUG-UGCC 1081 GUAGG(GAAG )CCGUGAAGC AGAC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGCAU---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GCAA UGAAAAUCAG UGUGAUGA-G 1321 CUUAUU-GGA -GCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUCCUAA-U UGC-CAGCAA 1441 CACC------ (CUUGU)--- -GGUGGUUG| GGUACA-UUA GGAGGACUGC CAGU(GC-CA 1501 A)ACUGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAGUGGGA-C -GCAACCCC( GAGA)GGGGG CGCUAAUCUC 1621 CGAAACUCGA UCGUAGUUCG GAUUGCGGAC (UGAAACUC) GUCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCCGU(UCAG AAG)ACGGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCC CC-U------ -----(--GU 1801 AC-)------ -----GG-GG GUCGAAUCU- GGGCUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC A...|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.4.7 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.4.7 HC.MORRHUAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.4.7 HC.MORRHUAE_SUBGROUP. ORGANISM 1.1.3.4.7 HC.MORRHUAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hc.morrhu2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halococcus morrhuae.. ACCESSION No information KEYWORDS No information. SOURCE Halococcus morrhuae. ORGANISM Halococcus morrhuae. REFERENCE 1 AUTHORS Leffers,H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X72588 (bases 2017 to 3491) clone= HM1, HM2, HMB BASE COUNT 340 a 390 c 482 g 263 t 449 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCU-AU 61 UGCUAUCGGG GUCCGAUUCA GCCAUGCUA- --GUUGUACG ---------- ------GGU( 121 -UC----AG) ACC------- -----|---C GUAGCAAAUA GCUCCGUAAC ACGUGGUCAA 181 ACUACCCUCU GGACCGGGAU AUCCU--CG- G(-GAAA)CU GAGGUCAAUC CCAGAUA--C 241 UGCU--UUCA UGU-(UGGAA U--)-ACAG- AAAG-UCG-- GAA-ACGG-- ---------- 301 (--UCCG--- )------|-- --CC-GCCG- --GAGGACGU |GACUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAACCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCC A)GUGCGAUA 541 AG|GGGACCC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUACA-G 601 UC--CUCGC| UUUUCGUGAC C--------- ------(GUA AGAA--)--- ---------- 661 ----GGUCUC AG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCGAGUGAU AGCCACUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 GAACAGG|-- UCCGUCGGG- AAAUCCACCC GC(UC-A)AC GGGUGGGACG -UCCGGCGGA 841 AACCAGUC-G GCUU-GGGGC CGGGAGACCA GAGA|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCGGUAG C(GAAA)GCG U-CUCUGGAG AACGGACCCG 961 ACGGUGAGGG ACGAAAGCUU GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCAAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGGCGUU GGC-(U-AC- GA)--GCCAG CGCUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CGGCAC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUGUGCAG UGACAGUCAG UCCGAUGG-G 1321 CUUACU-UGA -GCCACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCG |UCCCUAA-U UGC-CAGCAG 1441 CAGC------ (CUUGU)--- -GCUGGCUG| GGUACA-UUA GGGAGACUGC CGUC(GC-UA 1501 A)GACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC CGGGCGACAC 1561 GCGGGCUACA AUGGCCGAGA CAGUGGGA-C -GCUACCCC( GAGA)GGGGA CGCUAAUCUC 1621 CUAACCUCGG UCGUAGUUCG GAUUGCGGGU (UGAAACCC) ACCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCAUU(UCAG AAG)AGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA UCACCCGAGU GAGGUCC-GG AUGA-G-GCC GG-CG----- -----(--CA 1801 A--)------ ----CGC-CG GUCGAAUCU- GGGCUU-CGC AAGGGGGAUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hc.morrhu3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halococcus morrhuae. ACCESSION No information KEYWORDS No information. SOURCE Halococcus morrhuae. ORGANISM Halococcus morrhuae. REFERENCE 1 AUTHORS kamekura,M. and Seno,Y. TITLE Nucleotide sequences of 16SrRNA encoding genes from halophilic archaea Halococcus morrhuae NRC16008 and Haloferax mediterranei ATCC33500 JOURNAL Nucleic Acids Res. 20, 3517-3517 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D11106 BASE COUNT 339 a 385 c 478 g 267 t 455 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGANNNU-AU 61 UGCUAUCGGG GUCCGAUUCA GCCAUGCUA- --GUUGUACG ---------- ------GGU( 121 -UU----AG) ACC------- -----|---C GUAGCAAAUA GCUCCGUAAC ACGUGGCCAA 181 ACUACCCUCU GGACCGGGAU AUCCU--CG- G(-GAAA)CU GAGGUCAAUC CCAGAUA--C 241 UGCU--UUCA UGU-(UGGAA U--)-ACNG- AAAG-UCG-- GAA-ACGG-- ---------- 301 (--UCCG--- )------|-- --CC-GCCG- --GAGGACGU |GACUUCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 ACAA------ ---------- ----GAACCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGNG-A AACCUUUACA CUGUAC(GCG A)GUGCGAUA 541 AG|GGGACCC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUACA-G 601 UC--CUCGC| UUUUCGUGAC C--------- ------(GUA AGAA--)--- ---------- 661 ----GGUCUC AG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCGAGUGAU AGCCACUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 GAACAGG|-- UCCGUCGGG- AAAUUCACCC GC(UC-A)AC GGGUG-GACG -UCCGGCGGA 841 AACCAGUC-G GCUU-GGGGC CGGGAGACCA GAGA|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCGGUGG C(GAAA)GCG U-CUCUGGAG AACGGACCCG 961 ACGGUGAGGG ACGAAAGCUU GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCAAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGGCGUU GGC-(U-AC- GA)--GCCAG CCCUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CGGCAC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUGUGCAG UGACAGUCAG UCUGAUGG-G 1321 CUUACU-UGA -GCCACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCG |UCCCUAA-U UGC-CAGCAG 1441 CAGC------ (CUUGU)--- -GCUGGCUG| GGUACA-UUA GGGAGACUGC CGUC(GC-UA 1501 A)GACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC CGGGCGACAC 1561 GCGGGCUACA AUGGCCGAGA CAGUGGGA-C -GCUACCCC( GAGA)GGGGA CGCUAAUCUC 1621 CUAACCUCGG UCGUAGUUCG GAUUGCGGGU (UGAAACCC) ACCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCAUU(UCAG AAG)AGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA UCACCCGAGU GAGGUCC-GG AUGA-G-GCC GG-CG----- -----(--CA 1801 A--)------ ----CGC-CG GUCGAAUCU- GGGCUU-CGC AAGGGGGAUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hc.morrhua 1924 bp RNA RNA 02-JUL-1998 DEFINITION Halococcus morrhuae str. LD.3.1 (C.B. van Niel) ATCC 17082 (T). ACCESSION No information KEYWORDS No information. SOURCE Halococcus morrhuae str. LD.3.1 (C.B. van Niel) ATCC 17082 (T). ORGANISM Halococcus morrhuae. REFERENCE 1 AUTHORS Leffers,H. and Garrett,R.A. TITLE The nucleotide sequence of the 16S ribosomal RNA gene of the archaebacterium Halococcus morrhua JOURNAL EMBO J. 3, 1613-1619 (1984) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17082 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: X00662 ATCC 17082 (T) = NCIMB 787 = JCM 8876 = CCM 537 isolate_name= LD.3.1 (C.B. van Niel) BASE COUNT 339 a 392 c 482 g 258 t 453 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCU-AU 61 UGCUAUCGGG GUCCGAUUCA GCCAUGCUA- --GUUGUACG ---------- ------GGU( 121 -UC----AG) ACC------- -----|---C GUAGCAAACA GCUCCGUAAC ACGUGGUCAA 181 NAUACCCUCU GGACCGGGAU AUCCU--CG- G(-GAAA)CU GAGGUCAACC CCGGAUA--C 241 UGCU--UUCA UGU-(UGGAA U--)-ACAG- AAAG-UCG-- GAA-ACGG-- ---------- 301 (--UCCG--- )------|-- --CC-GCCG- --GAGGACGU |GACUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAACCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GCC A)GUGCGAUA 541 AG|GGGACCC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUACA-G 601 UC--CUCGC| UUUUCGUGAC C--------- ------(GUA AGAA--)--- ---------- 661 ----GGUCUC AG-AAUAAGA GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCGAGUGAU AGCCACUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 GAACAGG|-- UCCGUCGGG- AAAUCCACCC GC(UC-A)AC GGGUG-GACG -UCCGGCGGA 841 AACCAGUC-G GCUU-GGGGC CGGGAGACCA GAGA|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCGGUAG C(GAAA)GCG U-CUCUGGAG AACGGACCCG 961 ACGGUGAGGG ACGAAAGCUU GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCAAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGGCGUU GGC-(U-AC- GA)--GCCAG CGCUG-UGCC 1081 GUAGG(GAAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CGGCAC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUG-GCAG UGACAGUCAG UCCGAUGG-G 1321 CUUACU-UGA -GCCACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCG |UCCCUAA-U UGC-CAGCAG 1441 CAGC------ (CUCG-)--- -GCUGGCUG| GGUACA-UUA GGGAGACUGC CGUC(GC-UA 1501 A)GACGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGUGC CGGGCGACAC 1561 GCGGGCUACA AUGGCCGAGA CAGUGGGA-C -GCUACCCC( GAGA)GGGGA CGCUAAUCUC 1621 CUAACCUCGG UCGUAGUUCG GAUUGCGGGU (UGAAACCC) ACCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCAUU(UCAG AAG)AGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA UCACCCGAGU GAGGUCC-GG AUGA-G-GCC GG-CG----- -----(--CA 1801 A--)------ ----CGC-CG GUCGAAUCU- GGGCUU-CGC AAGGGGGAUU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.3.4.8 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP. ORGANISM 1.1.3.4.8 HAR.VALLISMORTIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Har.valli2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloarcula vallismortis.. ACCESSION No information KEYWORDS No information. SOURCE Haloarcula vallismortis. ORGANISM Haloarcula vallismortis. REFERENCE 1 AUTHORS Ihara,K., Watanabe,S. and Tamura,T. TITLE Haloarcula argentinensis sp. nov. and Haloarcula mukohataei sp. nov., two new extremely halophilic archaea collected in Argentina JOURNAL Int. J. Syst. Bacteriol. 47 (1), 73-77 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D50851|g1902934 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 351 a 376 c 472 g 268 t 457 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------GGC( 121 -UU----AG) ACC------- -----|---C GUGGCAUAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGACCGCGAU AACCU--CG- G(-GAAA)CU GAGGCCAAUA GCGGAUA--U 241 UACU--CUCA GGC-(UGGAG U--)-GCC-G AGAG-UGA-- GAA-ACGU-- ---------- 301 (--UCCG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGAUGGUG GG(GUAAUGG )CCCACCAU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAACCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A GACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 CC--CUCGC| UUUUCUGAAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUUCA GG-AACAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCUU|GCU 781 GUGUAAG|-- UCCAUUGGG- AAAUCGACCA GC(UC-A)AC UGGUC-GGCG -UCCGGUGGA 841 AACUACAC-A GCUU-GGGGC CGAGAGACUC AACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCAAUGG G(GAAA)CCA C-GUUGAGAG ACCGGACCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACAAU GCUCGCUA|G GUAUGUCACG CGC-(C-AU- GA)--GCACG UGAUG-UGCC 1081 GUAGU(GAAG )ACGAUAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUUAC CGGUCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACGGUCAG GUUAACGA-C 1321 UUUACC-CGA CGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUUCUAG-U UGC-CAGCAA 1441 UACC------ (CUUGA)--- -GGUAGUUG| GGUACA-CUA GGAGGACUGC CGCU(GC-UA 1501 A)AGCCGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGAC CGGGCAACAC 1561 GCGGGCUACA AUGGCUCUGA CAGUGGGA-U -GCGACGCC( GAGA)GGCGA CGCUAAUCUC 1621 C-AAACGGAG UCGUAGUUCG GAUUGCGGGC (UGAAACCC) GCCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC GU-C------ -----(--AU 1801 GC-)------ -----GA-CG GUCGAAUCU- GGGCUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGA(GGAA) UCUGCGGCUG GAUCAC~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Har.mukoht 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloarcula mukohataei.. ACCESSION No information KEYWORDS No information. SOURCE Haloarcula mukohataei. ORGANISM Haloarcula mukohataei. REFERENCE 1 AUTHORS Ihara,K., Watanabe,S. and Tamura,T. TITLE Haloarcula argentinensis sp. nov. and Haloarcula mukohataei sp. nov., two new extremely halophilic archaea collected in Argentina JOURNAL Int. J. Syst. Bacteriol. 47 (1), 73-77 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D50850|g1877022 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 352 a 382 c 469 g 266 t 455 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------GGC( 121 -UU----AG) ACC------- -----|---C GUGGCGUAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAU AGACCAUGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUC GUGGAUA--U 241 CGCA--UUCA CGCU(UGAAC U--)-GCC-G AAUG-CGA-- GAA-ACGU-- ---------- 301 (--UCCG--- )------|-- --GC-GCUA- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGACGGUG GG(GUAACGG )CCCACCGU| GCCAG-UAAU CGGUACGGG| UGGU(GACA) 421 GCCA------ ---------- ----GAACCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 CC--CUCGC| UUUUCUGUAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUACA GG-AACAAGU GCUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CACGAGUGAU GGCCGCUAUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GCC 781 GGUCAAG|-- UCUGUUGGG- AAAUCGACGC GC(UC-A)AC GCGUC-GGCU -UCCGGUGGA 841 AACUGCAC-G GCUU-GGGGC CGGAAGACUC AGCG|GGUAC GUCUGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCAAUGG C(GAAA)GCG ACGCUGAGAA GCCGGACCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCAGGC 1021 CGUAAACGAU GCUCGUUA|G GUCUGCCGUG CAC-(U-AC- GA)--GUGCA CGGUG-AGCC 1081 GAAGU(GAAG )ACGAUAAAC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CAGUCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-AUAA CGACGGUCAG CUUGACGAGC 1321 UUUCCC-CGA -GUUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCAUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCGCA |UCCGUAG-U UGC-CAGCGA 1441 UACC------ (CCGA-)--- -GGUAGUCG| GGUACA-CUA CGGAGACCGC CGAC(GC-UA 1501 A)GUCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGAC UGGGCAACAC 1561 GCGGGCUACA AUGGUCGAGA CAAUGGGU-C -GCGAUACC( GAGA)GGUAG AGCUAAUCUC 1621 CCAAACUCGG UCGUAGUUCG GAUUGUGGGC (UGAAACUC) GCCCACAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GAGGUCC-GG AUGA-G-GCC AU-C------ -----(--AU 1801 GC-)------ -----GA-UG GUCAAAUCU- GGGCUU-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGA(GGAA) UCUGCGGCUG GAUCAC~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Har.maris1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloarcula marismortui str. clone HC8 [gene=rrnA operon]. ACCESSION No information KEYWORDS No information. SOURCE Haloarcula marismortui str. clone HC8 [gene=rrnA operon]. ORGANISM Haloarcula marismortui. REFERENCE 1 AUTHORS Mylvaganam,S. and Dennis,P.P. TITLE Sequence heterogeneity between the two genes encoding 16S rRNA from the halophic archaebacterium Haloarcula marismortui JOURNAL Genetics 130, 399-410 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X61688 Former RDP Sids: Hb.marism1 operon= rrnA operon isolate_name= clone HC8 NB: Halobacterium marismortui contains two nonadjacent ribosomal RNA operons designated as HC8 and HH10 with sequences 1472 nuc. long the 2 16S sequences differ by nucleotide substitution at 74 positions former name Halobacterium marismortui BASE COUNT 348 a 381 c 476 g 267 t 452 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------GGC( 121 -UU----AG) ACC------- -----|---C GUGGCAUAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGACCGCGAU AACCU--CG- G(-GAAA)CU GAGGCCAAUA GCGGAUA--U 241 AACU--CUCA UGU-(UGGAG U--)-GCC-G AGAG-UUA-- GAA-ACGU-- ---------- 301 (--UCCG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGAUGGUG GG(GUAACGG )CCCACCAU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAACCU G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AGG GC-AUAUA-G 601 CC--CUCGC| UUUUCUGUAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUACA GG-AACAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 GAACAAG|-- UCCGUUGGG- AAAUCGACGC GC(UC-A)AC GCGUC-GGCG -UCCAGCGGA 841 AACUGUCC-G GCUU-GGGGC CGGAAGACCU GAGG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCAAUGG G(GAAA)CCA C-CUCAGGAA GACGGACCCG 961 ACGGUGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGCCGUA GGC-(U-AC- GA)--GCCUG CGCUG-CGCC 1081 CUAGG(GAAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CGGUCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACAGUCAG GUUGACGA-C 1321 UUUACU-CGA CGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUUCUAG-U UGC-CAGCAA 1441 UACC------ (CUUGA)--- -GGUAGUUG| GGUACA-CUA GGAGGACUGC CGCU(GC-UA 1501 A)AGCGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGAC CGGGCAACAC 1561 GCGGGCUACA AUGGCUAUGA CAGUGGGA-U -GCAACGCC( GAGA)GGCGA CGCUAAUCUC 1621 C-AAACGUAG UCGUAGUUCG GAUUGCGGGC (UGAAACCC) GCCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC GU-C------ -----(--AU 1801 GC-)------ -----GA-CG GUCGAAUCU- GGGCUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGA(GGAA) UCUGUGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Har.japoni 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloarcula japonica str. TR-1 JCM 7785. ACCESSION No information KEYWORDS No information. SOURCE Haloarcula japonica str. TR-1 JCM 7785. ORGANISM Haloarcula japonica. REFERENCE 1 AUTHORS Takashina,T., Otozati,K., Hamamoto,T. and Horikoshi,K. TITLE Isolation of halophilic and halotolerant bacteria from a Japanese salt field and comparison of the partial 16S rRNA gene sequence of an extremely halophilic isolated with those of other extreme halophiles JOURNAL Biodiv. and Conserv. 3, 632-642 (1994) STANDARD No information COMMENTS Organism information Culture collection: JCM 7785 Sequence information (bases 1 to 1924) Corresponding GenBank entry: D28872|g517106 isolate_name= TR-1 BASE COUNT 318 a 333 c 440 g 245 t 588 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|CGCC GGAGGCC-AU 61 UGCUAUCGGA AUCCGAUUUA GCCAUGCUA- --GUUGUACG ---------- ------AGN( 121 -UU----AG) ACU------- -----|---C GUAGCAUAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGACCGCGAU AACCU--CG- G(-GAAA)CU GAGGCCAAUA GCGGAUA--U 241 AACU--GUGA UGC-(UGGAG U--)-GCN-G AGAG-UGA-- GAA-ACGU-- ---------- 301 (--UCCG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCNAUUA-G- 361 GUAGAUGGUG GG(GUAACGG )CCCACCAU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGGCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUC-GG- ---------- (----)---- -------AGG GC-AUAUA-G 601 CC--CUCGC| UUUUCUGUAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUACA GG-AACAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCAAGUGAU GGCCGAUAUU AUUGGGC|CU AAAGCGUUCG UAGCCG|GCC 781 GGACAAG|-- UCCAUUGGG- AAAU...... .C(UC-A)NN NNGUN-GGCG -U-CAGCGGA 841 AACGGG-C-G GCUU-GGGGC CGGAAGACUU GAGG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUAGACGGA CCACCAAUGG G(GAAA)CCA C-GUCAGGAA GACGGACCCG 961 ACG-UGAGGG ACGAAAGCUA GGGUCUCGAA CCGG(AU-AG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGGCGUA GGC-(U-AC- GA)--GCCUC GCGNN-NGCC 1081 NUAGG(GAAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUC.(....) .......... 1141 .......... .......... ........AC CGGAGGAGCC -UGUGGUUUA AUU~~(~~~~ 1201 ~~~~)~~GGA CA--UCUCAC CGGUCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACGGUCAG GUUGACGA-C 1321 UUUACU-CGA CGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUC-UG (UUAAGU)CA GGCAACGAGC GAGACCCACA |CUUCUAG-U UGC-CAGCAA 1441 CNCC------ (CUUGA)--- -GGUGGUUG| GGUACA-CUA GGAGGACUGC NNNU(GC-UA 1501 A)AAUGGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGAC CGGGCAACAC 1561 GCGGGCUACA AUGGCUCUGA CAGUGGGA-N -GCAANGNC( GAGA)GGCGA AGCUAAUCUC 1621 C-AAACGGAG UCGUAGUUCG GAUUNNGGGC (UGAAACCC) GCCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC GU-C------ -----(--AU 1801 GC-)------ -----GA-CG GUCGAAUCU- GG-CUC-CGC AAGGGGGCUU .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Har.sinai2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloarcula sinaiiensis. ACCESSION No information KEYWORDS No information. SOURCE Haloarcula sinaiiensis. ORGANISM Haloarcula sinaiiensis. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14130|g532827 BASE COUNT 355 a 372 c 462 g 276 t 459 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAG--C-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUAGCAUAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGACCGCGAU AACCU--CG- G(-GAAA)CU GAGGCCAAUA GCGGAUA--C 241 AACU--CUCA UGC-(UGGAG U--)-GCC-G AGAG-UUG-- GAA-ACGU-- ---------- 301 (--UCCG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGAUGGUG GG(GUAACGG )CCCACCAU| GCCGA-UAAU CGGUACAGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCU G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 CC--CUCGC| UUUUCUGUAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUACA GG-AACAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCUU|GCU 781 GUGUAAG|-- UCCAUUGGG- AAAUCCACCA GC(UC-A)AC UGGUC-GCCG -UCCGGUGGA 841 AACUACAC-A GCUU-GGGGC CGAGAGACUC AACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUAGACGGA CCACCAAUGG G(GAAA)CCA C-GUUGAGAG ACCGGACCCG 961 ACAGUGAGGG ACGAAAGCUG GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGAU GCUCGCUA|G GUGUGCCGUA G---(U-AC- GA)--GCCUG CGCUG-CGCC 1081 CUAGG(GAAG )CCGAGAAGC GAGC|C|GCC UGGGAAGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGGAU UGGCGGGGGA GCACCACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CGGUCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACAGUCAG GUUGACGA-C 1321 UUUACU-CGA CGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUUCUAG-U UGC-CAGCAA 1441 UACC------ (CUUGA)--- -GGUAGUUG| GGUACA-CUA GGAGGACUGC CAUU(GC-UA 1501 A)AAUGGAGG AAGGAAUGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGAC CGGGCAACAC 1561 GCGGGCUACA AUGGCUAUGA CAGUGGGA-C -GCAACGCC( GAGA)GGCGA AGCUAAUCUC 1621 C-AAACGUAG UCGUAGUUCG GAUUUCGGGC (UGAAACCC) GCCCGCAUGA AGCUGGAAUC 1681 GGUAGUAAUC GCGUG(UCAG AAG)CGCNCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUUAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GC- GU-C------ -----(--AU 1801 GC-)------ -----GA-CG GUCGAAUCU- GG-CUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGA(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Har.sinaii 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloarcula sinaiiensis. ACCESSION No information KEYWORDS No information. SOURCE Haloarcula sinaiiensis. ORGANISM Haloarcula sinaiiensis. REFERENCE 1 AUTHORS Kamekura,M. and Seno,Y. TITLE Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequence of 16S rRNA encoding genes from several halophilic archaea JOURNAL Experientia 49, 503-513 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14129|g532826 BASE COUNT 362 a 372 c 455 g 278 t 457 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAG--C-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUAGCAUAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGACCGCGAU AACCU--CG- G(-GAAA)CU GAGGCCAAUA GCGGAUA--U 241 AACU--CUCA UGC-(UGGAG U--)-GCA-G AGAG-UUA-- GAA-CCGU-- ---------- 301 (--UCCG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGAUGGUG GG(GUAACGG )CCCACCAU| GCCGA-UAAU CGGUACAGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCU G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AGG GC-AUAUA-G 601 CC--CUCGC| UUUUCUGAAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUUCA GG-AACAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCAAGUGAU GGCCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCUU|GCU 781 GUGUAAG|-- UCCAUUGGG- AAAUCCACCA GC(UC-A)AC UGGUC-GCCG -UCCGGUGGA 841 AACUACAC-A GCUU-GGGGC CGAGAGACUC AACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCAAUGG G(GAAA)CCA C-GUUGAGAG ACCGGACCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACAAU GCUCGCUA|G GUAUGUCACG CGC-(C-AU- GA)--GCACG UGAUG-UGCC 1081 GUAGU(GAAG )ACGAUAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC CCGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CGGUCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACAGUCAG GUUGACGA-C 1321 UUUACU-CGA CGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACA |CUUCUAG-U UGC-CAGCAA 1441 CACC------ (CCUGC)--- -GGUGGUUG| GGUACA-CUA GGAGGACUGC CAUU(GC-UA 1501 A)AAUGGAGG AAGGAAUGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGAC CGGGCAACAC 1561 GCGGGCUACA AUGGCUAUGA CAGUGGGA-C -GCAACGCC( GAGA)GGCGA AGCUAAUCUC 1621 C-AAACGUAG UCGUAGUUCG GAUUUCGGGC (UGAAACCC) GCCCGCAUGA AGCUGGAAUC 1681 GGUAGUAAUC GCGUG(UCAG AAG)CGCNCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUUAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GC- GU-C------ -----(--AU 1801 GC-)------ -----GA-CG GUUAAAUCU- GG-CUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGA(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Har.maris2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloarcula marismortui str. clone HH10 [gene=rrnB operon]. ACCESSION No information KEYWORDS No information. SOURCE Haloarcula marismortui str. clone HH10 [gene=rrnB operon]. ORGANISM Haloarcula marismortui. REFERENCE 1 AUTHORS Mylvaganam,S. and Dennis,P.P. TITLE Sequence heterogeneity between the two genes encoding 16S rRNA from the halophic archaebacterium Haloarcula marismortui JOURNAL Genetics 130, 399-410 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X61689 Former RDP Sids: Hb.marism2 operon= rrnB operon isolate_name= clone HH10 NB: Halobacterium marismortui contains two nonadjacent ribosomal RNA operons designated as HC8 and HH10 with sequences 1472 nuc. long the 2 16S sequences differ by nucleotide substitution at 74 positions former name Halobacterium marismortui BASE COUNT 362 a 369 c 462 g 279 t 452 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUUGCACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUAGCAUAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGACCGCAAU AACCU--CG- G(-GAAA)CU GAGGCCAAUA GCGGAUA--U 241 AACU--CUCA UGC-(UGGAG U--)-GCA-G AGAG-UUA-- GAA-ACGU-- ---------- 301 (--UCCG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGAUGGUG GG(GUAACGG )CCCACCAU| GCCGA-UAAU CGGUACAGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCU G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AGG GC-AUAUA-G 601 CC--CUCGC| UUUUCUGUAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUACA GG-AACAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCUU|GCU 781 GUGUAAG|-- UCCAUUGGG- AAAUCGACCA GC(UC-A)AC UGGUC-GGCG -UCCGGUGGA 841 AACUACAC-A GCUU-GGGGC CGAGAGACUC AACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCAAUGG G(GAAA)CCA C-GUUGAGAG ACCGGACCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACAAU GCUCGCUA|G GUAUGUCACG CGC-(C-AU- GA)--GCACG UGAUG-UGCC 1081 GUAGU(GAAG )ACGAUAAGC GAGC|C|GCC UGGGAAGUAC GUCU(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CGGUCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACAGUCAG GUUGACGA-C 1321 UUUACU-CGA CGCUACUGAG |AGGAGGUGC AUG|GCCACC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACA |CUUCUAG-U UGC-CAGCAA 1441 CACC------ (CCUGC)--- -GGUGGUUG| GGUACA-CUA GGAGGACUGC CAUU(GG-UA 1501 A)AAUGGAGG AAGGAAUGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGAC CGGGCAACAC 1561 GCGGGCUACA AUGGCUAUGA CAGUGGGA-U -GCAACGCC( GAAA)GGCGA CGCUAAUCUC 1621 C-AAACGUAG UCGUAGUUCG GAUUGCGGGC (UGAAACCC) GCCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC GU-C------ -----(--AU 1801 GC-)------ -----GA-CG GUCGAAUCU- GGGCUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGA(GGAA) UCUGUGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Har.argent 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloarcula argentinensis.. ACCESSION No information KEYWORDS No information. SOURCE Haloarcula argentinensis. ORGANISM Haloarcula argentinensis. REFERENCE 1 AUTHORS Ihara,K., Watanabe,S. and Tamura,T. TITLE Haloarcula argentinensis sp. nov. and Haloarcula mukohataei sp. nov., two new extremely halophilic archaea collected in Argentina JOURNAL Int. J. Syst. Bacteriol. 47 (1), 73-77 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D50849|g1877021 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 359 a 371 c 465 g 272 t 457 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------AGU( 121 -UU----AG) ACU------- -----|---C GUGGCAUAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGACCGCGAU AACCU--CG- G(-GAAA)CU GAGGCCAAUA GCGGAUA--U 241 AACU--CUCA GGC-(UGGAG U--)-GCC-G AGAG-UUA-- GAA-ACGU-- ---------- 301 (--UCCG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGAUGGUG GG(GUAACGG )CCCACCAU| GCCGA-UAAU CGGUACAGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAGCCU G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUG-UG- ---------- (----)---- -------AGG GC-AUAUA-G 601 CC--CUCGC| UUUUCUGUAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUACA GG-AACAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCAAGUGAU GGCCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCUU|GCU 781 GUGUAAG|-- UCCAUUGGG- AAAUCGACCA GC(UC-A)AC UGGUC-GGCG -UCCGGUGGA 841 AACUACAC-A GCUU-GGGGC CGAGAGACUC AACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCAAUGG G(GAAA)CCA C-GUUGAGAG ACCGGACCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACAAU GCUCGCUA|G GUAUGUCACG CGC-(C-AU- GA)--GCACG UGAUG-UGCC 1081 GUAGU(GAAG )ACGAUAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUCAC CGGUCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACAGUCAG GUUGACGA-C 1321 UUUACU-CGA CGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCACA |CUUCUAG-U UGC-CAGCAA 1441 CACC------ (CCUGC)--- -GGUGGUUG| GGUACA-CUA GGAGGACUGC CAUU(GC-UA 1501 A)AAUGGAGG AAGGAAUGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGAC CGGGCAACAC 1561 GCGGGCUACA AUGGCUAUGA CAGUGGGA-C -GCAACGCC( GAGA)GGCGA AGCUAAUCUC 1621 C-AAACGUAG UCGUAGUUCG GAUUGCGGGC (UGAAACCC) GCCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC GU-C------ -----(--AU 1801 GC-)------ -----GA-CG GUCGAAUCU- GGGCUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGA(GGAA) UCUGCGGCUG GAUCAC~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Har.vallis 1924 bp RNA RNA 02-JUL-1998 DEFINITION Haloarcula vallismortis. ACCESSION No information KEYWORDS No information. SOURCE Haloarcula vallismortis. ORGANISM Haloarcula vallismortis. REFERENCE 1 AUTHORS Kamekura,M. and Dyall-Smith,M.L. TITLE Taxonomy of the family Halobacteriaceae and description of two new genera Halorubrobacterium and Natrialba JOURNAL J. Gen. Appl. Microbiol. 41, 333-350 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U17593|g894160 BASE COUNT 351 a 376 c 472 g 268 t 457 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AU 61 UGCUAUCGGA GUCCGAUUUA GCCAUGCUA- --GUCGCACG ---------- ------GGC( 121 -UU----AG) ACC------- -----|---C GUGGCAUAUA GCUCAGUAAC ACGUGGCCAA 181 ACUACCCUAC AGACCGCGAU AACCU--CG- G(-GAAA)CU GAGGCCAAUA GCGGAUA--U 241 UACU--CUCA GGC-(UGGAG U--)-GCC-G AGAG-UGA-- GAA-ACGU-- ---------- 301 (--UCCG--- )------|-- --GC-GCUG- --UAGGAUGU |GGCUGCGG| CCGAUUA-G- 361 GUAGAUGGUG GG(GUAAUGG )CCCACCAU| GCCGA-UAAU CGGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----GAACCC G|GAGACGGU AU(CUGAGA- CAAG)AUACC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A GACCUUUACA CUGCAC(GAC A)GUGCGAUA 541 GG|GGGACUC CGAGUG-CG- ---------- (----)---- -------AGG GC-AUAUA-G 601 CC--CUCGC| UUUUCUGAAC C--------- ------(GUA AGGU--)--- ---------- 661 ----GGUUCA GG-AACAAGG ACUGGGCA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG UCCGAGUGAU GGCCGAUAUU AUUGGGC|CU AAAGCGUCCG UAGCUU|GCU 781 GUGUAAG|-- UCCAUUGGG- AAAUCGACCA GC(UC-A)AC UGGUC-GGCG -UCCGGUGGA 841 AACUACAC-A GCUU-GGGGC CGAGAGACUC AACG|GGUAC GUCCGGGGUA GGA(GUGAAA 901 )UCCUGUAAU CCUGGACGGA CCACCAAUGG G(GAAA)CCA C-GUUGAGAG ACCGGACCCG 961 ACAGUGAGGG ACGAAAGCCA GGGUCUCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACAAU GCUCGCUA|G GUAUGUCACG CGC-(C-AU- GA)--GCACG UGAUG-UGCC 1081 GUAGU(GAAG )ACGAUAAGC GAGC|C|GCC UGGGAAGUAC GUCC(GCAA) GGAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC CGGAGGAGCC -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA CA--UCUUAC CGGUCC---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGUA-GUAA UGACGGUCAG GUUAACGA-C 1321 UUUACC-CGA CGCUACUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCA |CUUCUAG-U UGC-CAGCAA 1441 UACC------ (CUUGA)--- -GGUAGUUG| GGUACA-CUA GGAGGACUGC CGCU(GC-UA 1501 A)AGCCGAGG AAGGAACGGG CAACGGUAGG UCAGUAUGCC CCGAAUGGAC CGGGCAACAC 1561 GCGGGCUACA AUGGCUCUGA CAGUGGGA-U -GCGACGCC( GAGA)GGCGA CGCUAAUCUC 1621 C-AAACGGAG UCGUAGUUCG GAUUGCGGGC (UGAAACCC) GCCCGCAUGA AGCUGGAUUC 1681 GGUAGUAAUC GCGUG(UCAG AAG)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA GCACCCGAGU GGGGUCC-GG AUGA-G-GCC GU-C------ -----(--AU 1801 GC-)------ -----GA-CG GUCGAAUCU- GGGCUC-CGC AAGGGGGCUU AAGUCGUAAC 1861 AAGGUAGCCG UAGA(GGAA) UCUGCGGCUG GAUCAC~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.3.5-TH 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.5 THERMOPLASMALES_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.5 THERMOPLASMALES_AND_RELATIVES. ORGANISM 1.1.3.5 THERMOPLASMALES_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.3.5.1 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.5.1 TPL.ACIDOPHILUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.5.1 TPL.ACIDOPHILUM_SUBGROUP. ORGANISM 1.1.3.5.1 TPL.ACIDOPHILUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Pph.oshima 1924 bp RNA RNA 02-JUL-1998 DEFINITION Picrophilus oshimae str. KAW2/2 DSM 9789 (T). ACCESSION No information KEYWORDS No information. SOURCE Picrophilus oshimae str. KAW2/2 DSM 9789 (T). ORGANISM Picrophilus oshimae. REFERENCE 1 AUTHORS Schleper,C., Puehler,G., Klenk,H.-P. and Zillig,W. TITLE Picrophilus oshimae and Picrophilus torridus fam. nov., gen. nov., sp. nov., two species of hyperacidophilic, thermophilic, heterotrophic, aerobic archaea JOURNAL Int. J. Syst. Bacteriol. 46, 814-816 (1996) STANDARD No information REFERENCE 2 AUTHORS Schleper,C., Puehler,G., Holz,I., Gambacorta,A., Janekovic,D., Santarius,U., Klenk,H.P. and Zillig,W. TITLE Picrophilus gen. nov., fam. nov.: a novel aerobic, heterotrophic, thermoacidophilic genus and family comprising archaea capable of growth around pH 0 JOURNAL J. Bacteriol. 177, 7050-7059 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9789 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: X84901 isolate_name= KAW2/2 BASE COUNT 358 a 352 c 465 g 295 t 454 others ORIGIN 1 .......... .......... ........AU UCUGGU(UGA )UCCC|-GGC GGCGGCC-AC 61 UGCUAUCAAG UUCCGACUAA GCCAUGCGA- --GUCAAGGG ---------- ------GCC( 121 -GU----AA) GGC------- -----|---A CCGGCGUACC GCUCAGUAAC ACGCGGAUAA 181 UCUACCCUCG GGAAGGGCAU AACCU--CG- G(-GAAA)CU GAGGCUAAUU CCCUAUA--G 241 CCAU--UCAG AAC-(UGGAA U--)-GUUU- GGAU-GGU-- GAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GCCC- --GGGGAUGA |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGGUG GU(GUAACGG )ACCACCUA| GCCUA-AGAC GGGUACGGG| CCCU(GGGA) 421 GGGG------ ---------- ----UAGCCC G|GAGAUGGA CU(CUGAGA- CACU)AGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUGUGCA AUGCGC(GCA A)GCGCGACA 541 CG|GGGAGCU UGAGUG-UC- ---------- (----)---- -------UUG GC-AAAAG-- 601 CC--AAGAC| UUUUCUUAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUAA GG-AAUAAGG GCUGGGUA-A GACGG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCCG-|CAG CUCAAGUGGU GGUCACUUUU ACUGAGC|CU AAAGCGUUCG UAGCCG|GCU 781 UUGUAAA|-- UCUCCAGGU- AAAUUCUAGC GC(UU-A)AC GUUAG-AUC- -UCCUGGAGA 841 GACUGUAA-A GCUU-GGGAC CGGGUGGGGU UGAA|CGUAC UUUCAGGGUA GGG(GUAAAA 901 )UCCUGUAAU CCUGGAAGGA CGACCGGUAG C(GAAG)GCG U-UCAACUAG AACGGAUCCG 961 ACGGUGAGGA ACGAAGGCUA GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACUCU GCCCACUU|G GUGUUGCCUU UCC-(G-UU- GA)--GGGGA GGCAG-UGCC 1081 GGAGC(GAAG )GUGUUAAGU GGGC|C|GCU UGGGGAGUAU GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCGCAAC GGGAGGAAUG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA AA--ACUCAC CGGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CCUG--UGGA UGAGAGUCAA CCUGACGA-G 1321 UUUACU-CGA -UAGCAGGAG |AGGUGGUGC AUG|GCCGUC GUCA|GCUCG U|ACC(GUAG 1381 )GGCGUUCAC (UUAAGU)GU GAUAACGAGC GAGACCCCCA |UCUCCAA-U UGC-AAUUAC 1441 CUAC------ (GCGG-)--- -GUAG-GUA| AGCACU-UUG GAGAGACCGC CAGC(GC-UA 1501 A)GCUGGAGG AAGGAGGGGU CGACGGCAGG UCAGUACGCC CCGAAUCUCC CGGGCUACAC 1561 GCGCAUUACA AAGGGCAGGA CAAUGCGU-U -GCAACCUC( GAAA)GGGGA AGCUAAUCGC 1621 C-AAACCUGU CCGUAGUUAG GAUUGAGGGC (UGUAACUC) GCCCUCAUGA AUCUGGAUUC 1681 CGUAGUAAUC GCGGG(UCAA CAA)CCCGCG GUGAAUAUGC CCCUGCUCCU UGCACACACC 1741 GCCUGUCAAA CCAUCCGAGC UGGUGUU-GG AUGA-G-GGU UA-GCUC--- -----(--GA 1801 GA-)------ -GG-GUU-AG CUCAAAUCU- GAUGUC-AGU GAGGAGGGUU AAGUCAUAAC 1861 AAGGUAUCUG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Tpl.acidop 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermoplasma acidophilum str. 122-1B2. ACCESSION No information KEYWORDS No information. SOURCE Thermoplasma acidophilum str. 122-1B2. ORGANISM Thermoplasma acidophilum. REFERENCE 1 AUTHORS Ree,H.K., Cao,K., Thurlow,D.L. and Zimmermann,R.A. TITLE The structure and organization of the 16S rRNA gene from Archaebacterium Thermoplasma acidophilum JOURNAL Can. J. Microbiol. 35, 124-133 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M38637 isolate_name= 122-1B2 BASE COUNT 366 a 352 c 456 g 297 t 453 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(CGA )UCCU|-GCC GGCGGUC-AC 61 UGCUAUCAGG UUCCGACUAA GCCAUGCAA- --GUCAUGGG ---------- ------GCC( 121 -GU----AA) GGC------- -----|---A CCGGCGAACA GCUCAGUAAC ACGUGGAUAA 181 UUUACCCUCA GGCGGGGCAU AACCU--CG- G(-GAAA)CU GAGGCUAAUU CCCCAUA--G 241 UCAU--UACA AAC-(UGGAA U--)GGUUG- UAAU-GAU-- GAA-A-GC-- ---------- 301 (--UUCU--- )------|-- --GC-ACCU- --GAGGAUAA |GUCUGCGG| CCUAUCA-G- 361 GUAGUAGGUG GU(GUAAAGG )ACCACCUA| GCCUA-AGAC GGGUACGGG| CCCU(GAAA) 421 GGGG------ ---------- ----GAGCCC G|GAGAUGGA CU(CUGAGA- CAAC)AGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AAACUGUGCA AUGCGC(GAA A)GCGCGACA 541 CG|GGGAGCC UGAGUG-CC- ---------- (----)---- -------UUG AC-UUUUU-G 601 UC--AAGGC| UUUUCUGAUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCAUCA GG-AAUAAGG GCUGGGCA-A GACGG-GUG( CCA--GCCGC CGCGGUAA)C 721 ACCCG-|CAG CUCGAGUGGU GAUCACUUUU AUUGAGU|CU AAAGCGUUCG UAACCG|GUC 781 UUAUAAA|-- UCUUCAGAU- AAAUUCUUCC GC(UU-A)AC GGAAG-AAC- -UUCUGAAGA 841 GACUGUAA-G ACUU-GGGAC CGGGUGAGGU UGAA|UGUAC UUUCAGGGUA GGG(GUAAAA 901 )UCCUGUAAU CCUGAAAGGA CGACCGGUGG C(GAAA)GCG U-UCAACUAG AACGGAUCCG 961 ACGGUGAGGG ACGAAGGCUA GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGC 1021 UGUAAACGCU GCCCACUU|G GUGUUGCUUC UCC-(G-UU- GA)--GGGGG GGCAG-UGCC 1081 GUAGC(GAAG )GUGUUAAGU GGGU|C|ACU UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCGCAAC GGGAGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA AA--ACUCAC CGGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CCUU--CGGA UGAGGGUCAA CCUGACGA-A 1321 UUUACC-CGA -UAGAAGGAG |AGGUGGUGC AUG|GCCGUC GUCA|GCUCG U|ACC(GUAG 1381 )GGCGUUCAC (UUAAGU)GU GAUAACGAGC AAGACCCCCA |UCUCUAA-U UGC-CAGACU 1441 GUCU------ (UUGC-)--- -GGGC-AGA| GGCACU-UUA GAGGGACCGC CAGC(GC-UA 1501 A)GCUGGAGG AAGGAGGGGU CGACGGCAGG UCAGUACGCC CCGAAUCUCC CGGGCUACAC 1561 GCGCGCUACA AAGGACGGGA CAAUGAGU-U -GCAACCUC( GAAA)GGGGA AGCUAACCUC 1621 G-AAACCCGU UCGUAGUCAG GACUGAGGGC (UGUAACUC) GCCCUCACGA AUGUGGAUUC 1681 CGUAGUAAUC GUAGG(UCAA CAG)CCUACG GUGAAUAUGC CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAA CCAUCCGAGC UGGUGUU-GG AUGA-G-GGU CC-GUCC--- -----(--UC 1801 U--)------ -GG-AUG-GA UUCGAAUCU- GAUGUC-AGU GAGGAGGGUU AAGUCGUAAC 1861 AAGGUAUCCG UAGG(GGAA) CCUGCGGAUG GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.3.5.2 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.5.2 ENV.SBAR16_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.5.2 ENV.SBAR16_SUBGROUP. ORGANISM 1.1.3.5.2 ENV.SBAR16_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.SBAR16 1924 bp RNA RNA 02-JUL-1998 DEFINITION Santa Barbara. ACCESSION No information KEYWORDS No information. SOURCE Santa Barbara. ORGANISM Santa Barbara. REFERENCE 1 AUTHORS DeLong,E.F. TITLE Archaea in coastal marine environments JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 5685-5689 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M88077 library_source= Santa Barbara Channel bacterioplankton DNA NB: method:PCR IDENT: Thermoplasma relative (distant) BASE COUNT 214 a 199 c 291 g 196 t 1024 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~.U UUCGGU(UGA )UCCU|-GCC GGCAAGG-CC 61 CGCUUUUGGA GUUCGAUUAA GCCAUGCGA- --GUCGAGAG ---------- -------CC( 121 -UU---AGG) GG-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUAU UGUCUGGAAU AACCU--CG- G(-GAAA)CU GWGAACAAGG CCGGAUA--A 241 CCCA--CAAU GCC-(UGGAA C--)-GGU-U UGUG-GGU-- GAA------- ---------- 301 (--------- )------|-- ------G-A- --UAGGAUGG |GUCUGCGG| CGUAUCA-G- 361 GUCGUAGGGG GU(GUAAUGG )ACCUCCUA| GCCAU-CGAC GCGUACGGG| UGUU(GGGA) 421 GACA------ ---------- ----UAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGACCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUCACA CUGCAG(GAA A)CUGUGAUG 541 AG|GGAACUC CAAGUG-CA- ---------- (----)---- -------UUC AC-UUAU--G 601 UG--UAUGC| UUUUUUUGAC U--------- ------(AUU AAUC--)--- ---------- 661 ----GGUCAA CG-AAUAAGG GCUGGGAA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCAAGUGGU CGUCGCUUUU AUUGGGC|CU AAAACGUCCG UAGCCU|GUU 781 UGGUAAA|-- UCUGUGGGU- AAAUCAACCA GC(UU-A)AC UGGUU-GAA- -UUCUGCAGA 841 GACUGCCA-G ACUA-GGGAC CGGGAGAGGU GUGG|GGUAC UCUAGGGGUA GGG(GUAAAA 901 )UCCUGUCAU CCUUAGAGGA CCACCAGUUG C(GAAG)GCG C-CACACUGG AACGGAUCCG 961 ACGGUCAGGG ACGAAGCCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGG 1021 UGUAAACGCU GUGAACUU|G GUGUCGGGGA UCC-(G-CA- AU)--GGGUC CUCGG-UGCC 1081 GGAGU(GAAG )AUGUUAAGU UCAC|U|GCC UGGGGNGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUGCAAC GGGAGGAGNG -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGG. ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.OARB 1924 bp RNA RNA 02-JUL-1998 DEFINITION coastal surface. ACCESSION No information KEYWORDS No information. SOURCE coastal surface. ORGANISM coastal surface. REFERENCE 1 AUTHORS DeLong,E.F., Wu,K.Y., Prezelin,B.B. and Jovine,R.V.M. TITLE High abundance of Archaea in Antarctic marine picoplankton JOURNAL Nature 371, 695-697 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U11042|g551496 library_source= coastal surface waters picoplankton DNA from Oregon BASE COUNT 214 a 189 c 273 g 176 t 1072 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .....GAAU( 121 -U-----AG) AU-------- -----|---C AUUGCAAACU GCUCAGUAAC ACGUGGAUAA 181 CCUGCCCUAU GCUCUGGGAU AACCU--CG- G(-GAAA)CU GAGAAGAAUA CCGGAUA--G 241 ACCA--CAAC GCC-(UGGAA C--)-GGU-G UGUG-GUU-- GAA-A-GG-- ---------- 301 (--UCAC--- )------|-- --AC-GGCA- --UAGGAUGG |GUCUGCGG| CGUAUCA-G- 361 GUCGUAGGGG GU(GUAACGG )ACCUCCUA| GCCAU-CGAC GCGUACGGG| UUGU(GGGA) 421 GCAA------ ---------- ----UAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGACCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUCACA CUGCAG(GAA A)CUGUGAUG 541 AG|GGAACUC CAAGUG-AC- ---------- (----)---- -------UGC AC--AUU--G 601 UG--UAGCC| UUUUCUUUAC U--------- ------(AUU AAUC--)--- ---------- 661 ----GGUAUU GG-AAUAAGG GCUGGGAA-A GACCG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CAG CUCAAGUGGU CGUCGCUUUU AUUGGGC|CU AAAACGUCCG UAGCCU|GUU 781 UGGUAAA|-- UCUGUGGGU- AAAUCAACCA GC(UU-A)AC UGGUU-GAA- -UUCUGCAGA 841 GACUGCCA-G ACUA-GGGAC CGGGAGAGGU GUGG|GGUAC UCUAGGGGUA GGG(GUAAAA 901 )UCCUGUCAU CCUUAGAGGA CCACCAGUUG C(GAAG)GCG C-CACACUGG AACGGAUCCG 961 ACGGUCAGGG ACGAAGCCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGG 1021 UGUAAACGCU GUGAACUU|G GUGUCGGGAG UCC-(G-CA- AU)--GGGCC CCCGG-UGCC 1081 GGAGU(GAAG )AUGUUAAGU UCAC|U|GCC UGGGGAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUGCAAC GGGAGGAGCG -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGA A..-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.5.3 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.5.3 ENV.25-7_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.5.3 ENV.25-7_SUBGROUP. ORGANISM 1.1.3.5.3 ENV.25-7_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.25-7 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L11976 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA BASE COUNT 50 a 59 c 73 g 49 t 1693 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CGG-|CAC CUCAAGUGGU CGUCGCUUUU AUUGGGC|CU AAAACGUCCG UCGCCU|GUU 781 UGGUACA|-- UUCGUGGGU- AAAUCAAGCC GC(UC-A)AC GCGUU-GAAU -U-CUGCGAG 841 GACGGCCA-G ACUA-GGGAC CGGGAGAGGU AUGG|GGUAC UCUCAGGGUA GGG(GUAAAA 901 )UCCAGUCAU CCUGAGGGGA CCACCUGUUG C(AGAG)GCG C-CAAUCUAG AACGGAUC.. 961 .......... .......... .......... ....(..... ...C)CCGGG UA--CCGAGC 1021 UCG....... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.SBAR1A 1924 bp RNA RNA 02-JUL-1998 DEFINITION Santa Barbara. ACCESSION No information KEYWORDS No information. SOURCE Santa Barbara. ORGANISM Santa Barbara. REFERENCE 1 AUTHORS DeLong,E.F. TITLE Archaea in coastal marine environments JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 5685-5689 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M88074 library_source= Santa Barbara Channel bacterioplankton DNA NB: method:PCR IDENT: Thermoplasma relative (distant) BASE COUNT 209 a 213 c 293 g 180 t 1029 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~.U UCCGGU(UGA )UCCU|-GCC GGCAGUG-AC 61 CGCUAUUGGA GUCCGAUUAA GACAUGCGA- --GUCGAGAG ---------- -------CU( 121 -UU---CGG) AG-------- -----|---C UCGGCAUACU GCUCAGUAAC ACGUGGGUAA 181 CCUGCCCUAU GCUGGGGGAU AACCU--CG- G(-GAAA)CU GAGAACAAUA CCCCAUA--G 241 UCCA--CUAC GCC-(UGGAA C--)-GGU-G AGUG-GAU-- GAA-A-GC-- ---------- 301 (--CCCG--- )------|-- --GC-GGCA- --UAGGAUGG |GCCUGCGG| CGUAUCA-G- 361 GUUGUAGGGG GU(GUAAUGU )ACCCUCUA| GCCUU-CGAC GCGUACGGG| UUGU(GAGA) 421 GCAA------ ---------- ----UAGCCC G|GAGAUGGA UU(CUGAGA- CAAG)AAUCC 481 AGGUCC(CAC G)GGACGCAG CAGUCGCG-A AACCUUGACA AUGCGG(GAA A)CCGUGAUC 541 AG|GGGACUC CAAGUG-C-- ---------- (----)---- -------CAG GAGUAAGA-U 601 CC--UGUGC| UUUUC--AUC U--------- ------(CUC UUCAAA)--- ---------- 661 ----GGAUUU GG-AAUAAGA GGUGGGUA-A GGACG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGC CUCAAGUGGU AGUCGAUUUU AUUGGGC|CU AAAACGUCCG UCGCCG|GUC 781 UGGUGCA|-- UUCGUGGGU- AAAUCAACCC GC(UC-A)AC GGGUU-GAA- -UUCUGCGAG 841 CACGGCCA-G ACUA-GGGAC CGGGAGAGGU GUAG|GGUAC GCUCGGGGUA GGG(GUAAAA 901 )UCCUGUCAU CCCGAGCGGA CCACCUGUUG C(GAAG)GCG C-UACACUAG AACGGAUCCG 961 ACGGUCAGGG ACGAAGCCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGG 1021 UGUAAACGCU GUGGACUU|G GUGUUGGAAG CUU-(C-CC- AG)A-GGGCU UUCAG-UGCC 1081 GUAGC(GAAG )GUGAUAAGU CCAC|U|GCC UGGGGAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA ACACCGCAAC CUGAGGAUUG -GGCGG.... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.PVA1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U46677|g1208626 library_source= Pele's Vents Archaea DNA BASE COUNT 213 a 214 c 297 g 189 t 1011 others ORIGIN 1 .......... .......... .........U UCCGGU(UGA )UCCU|-GCC GGAGGCU-AC 61 CGCUAUUGGA GUUCGAUUAA GCCAUGCGA- --GUCUAGAG ---------- -------GC( 121 -CU----A-) GC-------- -----|---C UCGGCGUACC GCUCAGUAAC ACGUGGGUAA 181 CCUACCCUAU GCUGGGGAAU AAGCU--CG- G(-GAAA)CU GAGAAUAAUG CCCCAUA--G 241 UCCA--CUAC GCC-(UGGAA C--)-GGU-G AGUG-GAU-- UAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GGCA- --UAGGAUGG |GCCUGCGG| CGUAUCA-G- 361 GUUGUAGGGG GU(GUAAUGU )ACCCUCUA| GCCAU-CCAC GCGUACGGG| UGUU(GGGA) 421 GACA------ ---------- ----UUGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGACCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUGGCA AUGCGA(GAA A)UCGUGACC 541 AG|GGAACUC CAAGUG-GC- ---------- (----)---- -------AGG G-GUAAGA-C 601 CC--U-GUC| UUUUUCCGAC U--------- ------(CUA AAUA--)--- ---------- 661 ----GGUCGG CG-AAUAAGG GGUGGGUA-A GGACG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGC CUCAAGUGAU AGUCGCUUUU AUUGGGC|CU AAAACGUCCG UAGCCG|GUC 781 UGGUACA|-- UUCGUGGGU- AAAUCAACUC GC(UU-A)AC GAGUU-GAA- -UUCUGCGAG 841 GACGGCCA-G ACUU-GGGAC CGGGAGAGGU GUGG|GGUAC UCUCAGGGUA GGG(GUAAAA 901 )UCCUGUCAU CCUGAGAGGA CCACCUGUUG C(GAAG)GCU C-CACACUAG AACGGAUCCG 961 ACGGUCAGGG ACGAAGCCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGG 1021 UGUAAACGCU GUGGACUU|G AUGUUGGGGA CGC-(U-CC- GA)--GCGUU CUCAG-UGUC 1081 GAAGC(GAAG )GUGAUAAGU CCAC|U|GCC UGGGGAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCGCAAC CUGAGGAUUG -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGGG ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.ANT5 1924 bp RNA RNA 02-JUL-1998 DEFINITION clone ANTARCTIC5.. ACCESSION No information KEYWORDS No information. SOURCE clone ANTARCTIC5. ORGANISM clone ANTARCTIC5. REFERENCE 1 AUTHORS DeLong,E.F., Wu,K.Y., Prezelin,B.B. and Jovine,R.V.M. TITLE High abundance of Archaea in Antarctic marine picoplankton JOURNAL Nature 371, 695-697 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U11044|g551498 BASE COUNT 220 a 206 c 293 g 194 t 1011 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U UCCGGU(UGA )UUCC|-GCC GGACGGU-AC 61 CGCUAUUGGA GUUCGAUUAA GCCAUGCGA- --GUCGCGAG ---------- ------AAU( 121 -U-----AG) AUU------- -----|---C UCGGCGUACC GCUCAGUAAC ACGUGGGUAA 181 CCUGCCCUAU GCUGGAUAAU AACCU--CG- G(-GAAA)CU GAGAAUAAUG AUCUAUA--G 241 UUCA--CUAC GCC-(UGGAA C--)-GGU-G AGUG-GAU-- GAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GGCA- --UAGGAUGG |GCCUGCGG| CGUAUCA-G- 361 GUUGUAGGGG GU(GUAAUGU )ACCCUCUA| GCCCU-CUAC GCGUACGGG| UGUU(GAGA) 421 GACA------ ---------- ----UCGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGGACC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUGGCA AUGCGA(GAA A)UCGUGACC 541 AG|GGAACUC CAAGUG-CA- ---------- (----)---- -------UGG GG-UAAG--A 601 CC--UAUGC| UUUUCUAGAC U--------- ------(CUA AAAA--)--- ---------- 661 ----GGUCUU GG-AAUAAGA GGUGGGUA-A GGACG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGC CUCAAGUGGU AGUCGCUUUU AUUGGGC|CU AAAACGU-CG UAGCCG|GUC 781 UGAUACA|-- UUCG-UGGGU AAAUCAACCA GC(UU-A)AC UGGUU-GAAU -UCUGCGAGG 841 -ACGGUCA-G ACUU-GGGAC CGGGAGAGGU GUGG|GGUAC GCUCAGGGUA GGG(GUAAAA 901 )UCCUGUCAU CCUGAGCGGA CCACCUGUUG C(GAAG)GCG C-CACACUAG AACGGAUCCG 961 ACGGUCAGGG ACGAAGCCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGG 1021 UGUAAACGCU GUGGACUU|G AUGUUGGGGG UGC-(U-CC- GA)--GCACU CUCAG-UGUC 1081 GAAGC(GAAG )GCGAUAAGU CCAC|U|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCGCAAC CUGAGGAUUG -UGCGGUUUA AUUGG(ACUC 1201 AACG)CCGG. ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.WHARN 1924 bp RNA RNA 02-JUL-1998 DEFINITION Woods Hole. ACCESSION No information KEYWORDS No information. SOURCE Woods Hole. ORGANISM Woods Hole. REFERENCE 1 AUTHORS DeLong,E.F. TITLE Archaea in coastal marine environments JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 5685-5689 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M88078 library_source= Woods Hole bacterioplankton DNA NB: method:PCR IDENT: Thermoplasma relative (distant) BASE COUNT 217 a 211 c 296 g 191 t 1009 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~.. UCCGGU(UGA )UCCC|-GCC GGACGGU-AC 61 CGCUAUUGGA GUUCGAUUAA GCCAUGCGA- --GUCGCGAG ---------- -------AA( 121 -AUU--AGA) UU-------- -----|---C UCGGCGUACC GCUCAGUAAC ACGUGGGUAA 181 CCUGCCCUAU GCUGGAUAAU AACCU--CG- G(-GAAA)CU GAGAAUAAUG AUCCAUA--G 241 UUCA--CUAC GCC-(UGGAA C--)-GGU-G AGUG-GAU-- GAA-A-GC-- ---------- 301 (--UCCG--- )------|-- --GC-GGCA- --UAGGAUGG |GCCUGCGG| CGUAUCA-G- 361 GUUGUAGGGG GU(GUAACGU )ACCCUCUA| GCCCU-CUAC GCGUACGGG| UGUU(GGGA) 421 GACA------ ---------- ----UAGCCC G|GAGAUGGA UU(CUGAGA- CACG)AAUCC 481 AGACCC(UAC G)GGGUGCAG CAGGCGCG-A AAACUUGGCA AUGCGA(GAA A)UCGUGACC 541 AG|GGAACUC CAAGUG-CA- ---------- (----)---- -------U-C GGGUAAGAGC 601 CG--CGUGC| UUUUCUUGAC U--------- ------(CUA AAUA--)--- ---------- 661 ----GGUCUU GG-AAUAAGG GGUGGGUA-A GGACG-GUG( CCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGC CUCAAGUGGU AGUCGCUUUU AUUGGGC|CU AAAACGUCCG UAGCCG|GUC 781 UGAUACA|-- UUCGUGGGU- AAAUCAACCA GC(UC-A)AC UGGUU-GAA- -UUCUGCGAG 841 GACGGUCA-G ACUU-GGGAC CGGGAGAGGU GUGG|GGUAC GCUCAGGGUA GGG(GUAAAA 901 )UCCUGUCAU CCUGAGCGGA CCACCUGUUG C(GAAG)GCG C-CACACUAG AACGGAUCCG 961 ACGGUCAGGG ACGAAGCCUA GGGGCACGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUAGG 1021 UGUAAACGCU GUGGACUU|G AUGUUGGGGG UGC-(U-CC- GA)--GCACU CUCAG-UGUC 1081 GAAGC(GAAG )GUGAUAAGU CCAC|U|GCC UGGGAAGUAC GGUC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCGCAAC CUGAGGAUUG -UGCGGUUUA AUUGG(ACUC 1201 AACG)~CGG. ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.3.6-AR 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.3.6 ARCHAEOGLOBALES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.3.6 ARCHAEOGLOBALES. ORGANISM 1.1.3.6 ARCHAEOGLOBALES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.pJP9 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25308 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 98 a 120 c 156 g 58 t 1492 others ORIGIN 1 .......... .......... .......... ......(... )....|.... AGAGGCC-AC 61 UGCUAUCCGG CUGGGACUAA GCCAUGCGA- --GUCCAGGG ---------- --GCUUGCC( 121 -GC----AA) GGCAAGC--- -----|---A CCGGCGGACG GCUCAGUAAC ACGUGGACAA 181 CCUGCCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAAC CCCCAUA--G 241 GGGA--UGGA UAC-(UGGAA U--)-GUU-C CAUC-UCC-- GAA-AGUCC- ---------- 301 (--GCAA--- )------|-- -GGA-GCCC- --GAGGAUGG |GUCUGCGG| CGGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCUA-AGAU CCGUACGGG| CCAU(GGGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CC(CUGAGA- CAAG)GGUCC 481 AGGCCC(UAC G)GGGNGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGCGACG 541 GG|GUCAGCC GGAGUG-CC- ---------- (----)---- --------GA UG-CUUG--- 601 CA--UCGGC| UGUCGGGGAG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCUCCC CA-AGCAAGG GCCGGG.... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Arg.fulgid 1924 bp RNA RNA 02-JUL-1998 DEFINITION Archaeoglobus fulgidus str. VC-16 DSM 4304. ACCESSION No information KEYWORDS No information. SOURCE Archaeoglobus fulgidus str. VC-16 DSM 4304. ORGANISM Archaeoglobus fulgidus. REFERENCE 1 AUTHORS Achenbach-Richter,L., Stetter,K.O. and Woese,C.R. TITLE A possible biochemical missing link among archaebacteria JOURNAL Nature 327, 348-349 (1987) STANDARD No information REFERENCE 2 AUTHORS Woese,C.R., Achenbach,L., Rouviere,P. and Mandelco,L. TITLE Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts JOURNAL Syst. Appl. Microbiol. 14, 364-371 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 4304 Sequence information (bases 1 to 1924) Corresponding GenBank entry: X05567 isolate_name= VC-16 BASE COUNT 306 a 419 c 534 g 233 t 432 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGCC-GC 61 UGCUAUCCGG CUGGGACUAA GCCAUGCGA- --GUCAAGGG --------GC UUGUAUCCC( 121 -UU----CG) GGGAUGCAAG C----|---A CCGGCGGACG GCUCAGUAAC ACGUGGACAA 181 CCUGCCCUCG GGUGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GGGA--UGGG UAC-(UGGAA U--)-GUC-C CAUC-UCC-- GAA-A-GC-- ---------- 301 (--GCUUA-- )------|-- --GC-GCCC- --GAGGAUGG |GUCUGCGG| CGGAUUA-G- 361 GUUGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CCGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CC(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGCGACG 541 GG|GUCAGCC GGAGUG-CU- ---------- (----)---- -------CGC GC--AUC--G 601 CG--CGGGC| UGUCGGGGUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCACCC CACAGCAAGG GCCGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGC GGCCACUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GGC 781 UGGUAAG|-- UCCUCCGGG- AAAUCUGGCG GC(UU-A)AC CGUCA-GACU -GCCGGAGGA 841 UACUGCCA-G CCUA-GGGAC CGGGAGAGGC CGGG|GGUAU UCCCGGAGUA GGG(GUGAAA 901 )UCCUGUAAU CCCGGGAGGA CCACCUGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACGAU GCGGACUA|G GUGUCACCGA AGC-(U-AC- GA)--GCUUC GGUGG-UGCC 1081 GGAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--GCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--GGGA UGAAGGUCGG GCUGAAGA-C 1321 CUUACC-AGA -CUAGCUGAG |AGGUGGUGC AUG|GCCGCC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGCGG 1441 UUCCC----- (UUCG-)--- GGGAAGCCG| GGCACA-CUG GGGGGACUGC CGGC(GC-UA 1501 A)GCCGGAGG AAGGUGCGGG CAACGGCAGG UCCGUAUGCC CCGAAUCCCC CGGGCUACAC 1561 GCGGGCUACA AUGGCCGGGA CAAUGGGU-A -CCGACCCC( GAAA)GGGGU AGGUAAUCCC 1621 CUAAACCCGG UCUAACCUGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACCUGGAAUC 1681 CGUAGUAAUC GCGCC(UCAA AAU)GGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAG CCACCCGAGU GGGCCAG-GG GCGA-G-GGG GU-GGCC--- -----(--CU 1801 A--)------ -GG-CCA-CC UUCGAGCCC- AGGGUC-CGC GAGGGGGGCU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Arg.fulgi2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Archaeoglobus fulgidus.. ACCESSION No information KEYWORDS No information. SOURCE Archaeoglobus fulgidus. ORGANISM Archaeoglobus fulgidus. REFERENCE 1 AUTHORS Ketchum,K.A., Dodson,R.J., Gwinn,M., Hickey,E.K., Peterson,J .D., Richardson,D.L., Kerlavage,A.R., Graham,D.E., Kyrpides ,N.C., Fleischmann,R.D., Quackenbush,J., Lee,N.H., Sutton,G .G., Gill,S., Kirkness,E.F., Dougherty,B.A., McKenney,K., Adams,M.D., Loftus,B., Peterson,S., Reich,C.I., McNeil,L.K., Badger,J.H., Glodek,A., Zhou,L., Overbeek,R., Gocayne,J.D., Weidman,J.F., McDonald,L., Utterback,T., Cotton,M.D., Spriggs,T., Artiach,P., Kaine,B.P., Sykes,S.M., Sadow,P.W., D'Andrea,K.P., Bowman,C., Fujii,C., Garland,S.A., Mason,T.M., Olsen,G.J., Fraser,C.M., Smith,H.O., Woese,C.R. and Venter,J .C. Klenk,H.P., Clayton,R.A., Tomb,J., White,O., Nelson,K.E., TITLE sulphate-reducing archaeon Archaeoglobus fulgidus The complete genome sequence of the hyperthermophilic, JOURNAL Nature 390 (6658), 364-370 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AE000782 (bases 1788987 to 1790478) complement BASE COUNT 306 a 419 c 534 g 233 t 432 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCUGGU(UGA )UCCU|-GCC AGAGGCC-GC 61 UGCUAUCCGG CUGGGACUAA GCCAUGCGA- --GUCAAGGG --------GC UUGUAUCCC( 121 -UU----CG) GGGAUGCAAG C----|---A CCGGCGGACG GCUCAGUAAC ACGUGGACAA 181 CCUGCCCUCG GGUGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GGGA--UGGG UAC-(UGGAA U--)-GUC-C CAUC-UCC-- GAA-A-GC-- ---------- 301 (--GCUUA-- )------|-- --GC-GCCC- --GAGGAUGG |GUCUGCGG| CGGAUUA-G- 361 GUUGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CCGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CC(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGCGACG 541 GG|GUCAGCC GGAGUG-CU- ---------- (----)---- -------CGC GC--AUC--G 601 CG--CGGGC| UGUCGGGGUG C--------- ------(CUA AAAA--)--- ---------- 661 ----GCACCC CACAGCAAGG GCCGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGC GGCCACUUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GGC 781 UGGUAAG|-- UCCUCCGGG- AAAUCUGGCG GC(UU-A)AC CGUCA-GACU -GCCGGAGGA 841 UACUGCCA-G CCUA-GGGAC CGGGAGAGGC CGGG|GGUAU UCCCGGAGUA GGG(GUGAAA 901 )UCCUGUAAU CCCGGGAGGA CCACCUGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAACGAU GCGGACUA|G GUGUCACCGA AGC-(U-AC- GA)--GCUUC GGUGG-UGCC 1081 GGAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAC GGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--GCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--GGGA UGAAGGUCGG GCUGAAGA-C 1321 CUUACC-AGA -CUAGCUGAG |AGGUGGUGC AUG|GCCGCC GUCA|GUUCG U|ACU(GUGA 1381 )AGCAUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGCGG 1441 UUCCC----- (UUCG-)--- GGGAAGCCG| GGCACA-CUG GGGGGACUGC CGGC(GC-UA 1501 A)GCCGGAGG AAGGUGCGGG CAACGGCAGG UCCGUAUGCC CCGAAUCCCC CGGGCUACAC 1561 GCGGGCUACA AUGGCCGGGA CAAUGGGU-A -CCGACCCC( GAAA)GGGGU AGGUAAUCCC 1621 CUAAACCCGG UCUAACCUGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACCUGGAAUC 1681 CGUAGUAAUC GCGCC(UCAA AAU)GGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCAAG CCACCCGAGU GGGCCAG-GG GCGA-G-GGG GU-GGCC--- -----(--CU 1801 A--)------ -GG-CCA-CC UUCGAGCCC- AGGGUC-CGC GAGGGGGGCU AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) UCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.4-THER 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.4 THERMOCOCCALES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.4 THERMOCOCCALES. ORGANISM 1.1.4 THERMOCOCCALES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.1.4.1-TC 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.4.1 TC.FUMICOLANS_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 1.1.4.1 TC.FUMICOLANS_ISOLATE. ORGANISM 1.1.4.1 TC.FUMICOLANS_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Tc.fumicol 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermococcus fumicolans str. ST557. ACCESSION No information KEYWORDS No information. SOURCE Thermococcus fumicolans str. ST557. ORGANISM Thermococcus fumicolans. REFERENCE 1 AUTHORS Godfroy,A., Meunier,J.R., Guezennec,J., Lesongeur,F., Raguenes,G., Rimbault,A. and Barbier,G. TITLE Thermococcus fumicolans sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent in the north Fiji Basin JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1113-1119 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z70250|g1235786 isolate_name= ST557 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 261 a 371 c 481 g 187 t 624 others ORIGIN 1 .......... .......... .......... .CCGGU(UGA )UCCU|-GCC GGAGCGC-AC 61 UGCUAUCGGG GUCCGACUAA GCCAUGCGAC GAGUCAAGGG ---------- -GGUGUCCC( 121 -UC----U-) GGGACNN--- -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GCCU--GAGG UAC-(UGGAA G--)-GUC-C UCAG-GCC-- GAA-AGGGGC ---------- 301 (---UCU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CNCACCAN| GCCGA-ANAC CGGUACGGG| CUGU(GAGA) 421 GCAG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAN NAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGCGACG 541 GG|GGGACCC CGAGUGCCC- ---------- (----)---- -------GUG GC--AUC--G 601 CC--GCANN| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCGCUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-G-CU -UGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC GGGG|GGUAC CCCUGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCAGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCCGCUGG AACGGGUCC- 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGUG AGC-(U-UC- GG)--GCUCG CCCGG-UGCC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GCGUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GCUGAAGG-U 1321 CUUGCC-GGA -CACGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCAC (UUAAGU)GU GGUAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGCCC 1441 UUCCC----- (GCU--)--- GGGAA-GGG| GGCACU-CUG GGGGGACUGC CGGC(GA-UA 1501 A)GCCG-AGG AAGGAGCGGG CGACGGUAGG UCAGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGCGCUACA AUGGGCGGGA CAAUGGGA-U -CCGACCCC( GAAA)GG--A AGGGAAUCCC 1621 CUAAACCCGC CCCCAGUUCG GAUCGCGGGC (UGCAACUC) GCCCGCGUGA AGCUGGAAU- 1681 -----UACCC GCGCG(UCAU CAU)C..... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.4.2-PC 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.4.2 PC.FURIOSUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.4.2 PC.FURIOSUS_SUBGROUP. ORGANISM 1.1.4.2 PC.FURIOSUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Pc.sp2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrococcus sp.. ACCESSION No information KEYWORDS No information. SOURCE Pyrococcus sp. ORGANISM Pyrococcus sp. REFERENCE 1 AUTHORS Antoine,E., Raguenes,G. and Querellou,J. TITLE 16S-rDNA and partial 23S-rDNA sequence of Pyrococcus sp. strain GE23 JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z54172|g987962 (bases 1 to 1505) BASE COUNT 290 a 440 c 557 g 218 t 419 others ORIGIN 1 .......... .......... .......... UCCGGU(UGA )UCCU|-GCC GGAGGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAAGGG ---------- -GGAGUCCC( 121 -UU----CU) GGGACGCC-- -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GCCU--GGGG UAC-(UGGAA G--)-GUC-C CCAG-GCC-- GAA-AGGGAG CC-------- 301 (--GUAA--- )------|-G GCUCCGCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGCGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------GUG CC--UCU--G 601 GC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCACUAUU AUUGGGC|CU AAAGCGGCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-GGCU -CGCUGGGGA 841 UACUGCGG-G CCCCUGGGAC CGGGAGAGGC CGGG|GGUAC CCCCGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCGGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG CCGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCUUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCG CCCGG-UGCC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GCUGAAGG-U 1321 CUUGCC-GGA -CGCGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCAC (UUAAGU)GU GGUAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGUCC 1441 CUCCC----- (GCU--)--- CGGGAGGGA| GGCACU-CUG GGGGGACUGC CGGC(GA-UA 1501 A)GCCGGAGG AAGGGGCGGG CGACGGUAGG UCAGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGCGCUACA AUGGGCGGGA CAAUGGGU-G -CCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 CUAAAUCCGC CCUCAGUUCG GAUCGCGGGC (UGCAACUC) GCCCGCGUGA AGCUGGAAUC 1681 CCUAGUACCC GCGCG(UCAU CAU)CGCGCG GCGAAUACGU CUCUGCUCCU UGCACACACC 1741 GCCCGUCACU CCACCCGAGC GGGGCCU-AG GUGA-G-GCC CG-AUCU--C C----(--UU 1801 CG-)----GG -AG-GUC-GG GUCGAGCCU- AGGCUC-CGU GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUACGGCUC GAUCACCUCC UAUC|GCCGG A.......~~ 1921 ~~~| // LOCUS Pc.abyssi 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrococcus abyssi.. ACCESSION No information KEYWORDS No information. SOURCE Pyrococcus abyssi. ORGANISM Pyrococcus abyssi. REFERENCE 1 AUTHORS Erauso,G., Reysenbach,A.-L., Godfroy,A., Meunier,J.-R., Crump ,B., Partensky,F., Baross,J.A., Marteinsson,V., Pace,N.R., Barbier,G. and Prieur,D. TITLE Pyrococcus abyssi sp. nov., a new hyperthermophilic archeon isolated from a deep sea hydrothermal vent JOURNAL Arch. Microbiol. 160, 338-349 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L19921 BASE COUNT 274 a 417 c 537 g 201 t 495 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGAGGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAAGGG ---------- -GGCGUCCC( 121 -UU----CU) GGGACGCC-- -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GCCU--GGGG UAC-(UGGAA G--)-GUC-C CCAG-GCC-- GAA-AGGGAG CC-------- 301 (--GUAA--- )------|-G GCUC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA--GAU CGGUACGGG| CCGU(GAGA) 421 GAGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGACA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGCGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------GUG CC--UCU--G 601 GC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCACUAUU AUUGGGC|CU AAAGCGGCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-GGCU -CGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CCCCGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCGGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG CCGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCG CCCGG-UGCC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GCUGAAGG-U 1321 CUUGCC-GGA -CGCGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCAC (UUAAGU)GU GGUAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGUCC 1441 CUCCC----- (GCU--)--- CGGGAGGGA| GGCACU-CUG GGGGGACUGC CGGC(GACUA 1501 A)GCCGGAGG AAGGGGCGGG CGACGGUAGG UCAGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGCGCUACA AUGGGCGGGA CAAUGGGU-G -CCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 CUAAACCCGC CCUCAGUUCG GAUCGCGGGC (UGCAACUC) GCCCGCGUGA AGCUGGAAUC 1681 CCUAGUAACG GCGCG(UCAU CAU)CGCGCG GCGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACU CCACCCGAGC GGGGCCU-AG GUGA-G-GCC CG-AUCU--C C----(--UU 1801 CG-)----GG -AG-GUC-GG GUCGAGCCU- AGGCUC-CGU GAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Pc.shnkaii 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrococcus shinkaii str. OT3. ACCESSION No information KEYWORDS No information. SOURCE Pyrococcus shinkaii str. OT3. ORGANISM Pyrococcus shinkaii. REFERENCE 1 AUTHORS Masuchi,Y. TITLE A New Hyperthermophile, Pyrococcus shnkaii isolated from Okinawa trench JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D45214|g633997 isolate_name= OT3 BASE COUNT 280 a 426 c 539 g 205 t 474 others ORIGIN 1 .......... .......... .......... ......(... )....|.GCC GGAGGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAAGGG ---------- -GGCGUCCC( 121 -UU----GC) GGGACGCC-- -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GCCU--GGGG UAC-(UGGAA G--)-GUC-C CCAG-GCC-- GAA-AGG-AG CC-------- 301 (--GUAA--- )------|-G CUCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-ACAU CGGUACGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGCGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------GUG CC--UCU--G 601 GC-ACGGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCGCUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-GGCU -CGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CCCCGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCGGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCG CCCGG-UGCC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UUCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GCUGAAGG-U 1321 CUUGCC-GGA -CGCGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCAC (UUAAGU)GU GGUAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGUCC 1441 CUCCC----- (GCU--)--- CGGGAGGGA| GGCACU-CUG GGGCGACUGC CGGC(GA-UA 1501 A)GCCGGAGG AAGCGGCGGG CGACGGUAGG UCAGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGCGCUACA AUGGGCGGGA CAAUGGGU-G -CCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 CUAAACCCGC C-UCAGUUCG GAUCGCGGGC (UGCAACUC) GCCCGCGUGA AGCUGGAAUC 1681 CCUAGUACCC GCGCG(UCAU CAU)CGCGCG GCGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACU CCACCCGAGC GGGGCCU-AG GUGA-G-GCC CG-AUCU--C C----(--UU 1801 CG-)----GG -AG-GUC-GG GUCGAGCCU- AGGCUC-CGU GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCC. ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Pc.furiosu 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrococcus furiosus. ACCESSION No information KEYWORDS No information. SOURCE Pyrococcus furiosus. ORGANISM Pyrococcus furiosus. REFERENCE 1 AUTHORS Robb,F.T. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: T12785|g410065 legacy_attribute= clone M4 BASE COUNT 38 a 53 c 76 g 39 t 1718 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(.UUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUCCCGGAU GCGGGCUA|G GUGUCGG--- --C-(U-UC- GA)---CUCG CCCGG-UGCC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAAUUCAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGG .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Pc.horiksh 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrococcus horikoshii str. JA-1. ACCESSION No information KEYWORDS No information. SOURCE Pyrococcus horikoshii str. JA-1. ORGANISM Pyrococcus horikoshii. REFERENCE 1 AUTHORS . Robb,F.T., Ammerman,J., Masuchi,Y., Gonzalez,J.M. and Kato,C TITLE Pyrococcus horikoshii sp. nov., extremely thermophilic archaeon isolated from the hydrothermal vent at Okinawa trough JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D87344|g1526455 isolate_name= JA-1 BASE COUNT 283 a 431 c 543 g 206 t 461 others ORIGIN 1 .......... .......... .......... .CCGGU(UGA )UCCC|-GCC GGAGGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAAGGG ---------- -GGCGUCCC( 121 -UU----CU) GGGACGCC-- -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCC-AUA--G 241 GCCU--GGGG UAC-(UGGAA G--)-GUC-C CCAG-GCC-- GAA-AGGGAG CC-------- 301 (--GUAA--- )------|-G GCUCCGCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGCGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------GUG CC--UCU--G 601 GC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCACUAUU AUUGGGC|CU AAAGCGGCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-GGCU -CGCUGGGGA 841 UACUGCGG-G CCUC-GGGAC CGGGAGAGGC CGGG|GGUAC CCCCGGGGUA CGG(GUGAAA 901 )UCCUAUAAU CCCGGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG CCGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCG CCCGG-UGCC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGGGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GCUGAAGG-U 1321 CUUGCC-GGA -CGCGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCAC (UUAAGU)GU GGUAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGUCC 1441 CUCCC----- (GCU--)--- CGGGAGGGA| GGCACU-CUG GGGGGACUGC CGGC(GA-UA 1501 A)GCCGGAGG AAGGGGCGGG CGACGGUAGG UCAGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGCGCUACA AUGGGCGGGA CAAUGGGA-C -CCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 CUAAACCCGC CCUCAGUUCG GAUCGCGGGC (UGCAACUC) GCCCGCGUGA AGCUGGAAUC 1681 CCUAGUACCC GCGCG(UCAU CAU)CGCGCG GCGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACU CCAUCCGAGC GGGGCCU-AG GUGA-G-GCC CG-AUCU--C C----(--UU 1801 CG-)----GG -AG-GUC-GG GUCGAGCCU- AGGCUC-CGU GAGGGGGAAG AAGUCGUAAC 1861 AAGGUAACC. ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Pc.furios2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrococcus furiosus str. DSM 3638. ACCESSION No information KEYWORDS No information. SOURCE Pyrococcus furiosus str. DSM 3638. ORGANISM Pyrococcus furiosus. REFERENCE 1 AUTHORS Achenbach,L.A. TITLE Pyrococcus furiosus 16S rRNA sequence JOURNAL Unpublished (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 3638 Sequence information (bases 1 to 1924) Corresponding GenBank entry: U20163|g643670 isolate_name= DSM 3638 BASE COUNT 291 a 438 c 551 g 215 t 429 others ORIGIN 1 .......... .......... ........AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAAGGG ---------- -GGCGUCCC( 121 -UU----CU) GGGACGCC-- -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GCCU--GGGG UAC-(UGGAA G--)-GUC-C CCAG-GCC-- GAA-AGGGAG CC-------- 301 (--GUAA--- )------|-G GC-CCGCCC- --GAGGAUGC |GGCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGCGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------GUG CC--UCU--G 601 GC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCACUAUU AUUGGGC|CU AAAGCGGCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-GGCU -CGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CCCCGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCGGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGCG CGGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCG CCCGG-UGCC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GCUGAAGG-U 1321 CUUGCC-GGA -CGCGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCAC (UUAAGU)GU GGUAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGUCC 1441 CUCCC----- (GCU--)--- CGGGA-GGA| GGCACU-CUG GGGGGACUGC CGGC(GA-UA 1501 A)GCCGGAGG AAGGGGCGGG CGACGGUAGG UCAGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGCGCUACA AUGGGCGGGA CAAUGGGA-C -CCGACCUC( GAAA)GGGGA AGGGAAUCCC 1621 CUAAACCCGC CCUCAGUUCG GAUCGCGGGC (UGCAACUC) GCCCGCGUGA AGCUGGAAUC 1681 CCUAGUACCC GCGUG(UCAU CAU)CGCGCG GCGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACU CCACCCGAGC GGAGUCC-GG GUGA-G-GCC UG-AUCU--C C----(--UU 1801 CG-)----GG -AG-GUC-AG GUCGAGCCC- GGGCUC-CGU GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAACCG UAGG(GGAA) CCUACGGCUC GAUCACCUCC U...|..... ........~~ 1921 ~~~| // LOCUS 1.1.4.3-TC 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.4.3 TC.CELER_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.1.4.3 TC.CELER_SUBGROUP. ORGANISM 1.1.4.3 TC.CELER_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Tc.peptph3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermococcus peptonophilus str. SM-2. ACCESSION No information KEYWORDS No information. SOURCE Thermococcus peptonophilus str. SM-2. ORGANISM Thermococcus peptonophilus. REFERENCE 1 AUTHORS Gonzalez,J.M., Kato,C. and Horikoshi,K. TITLE Thermococcus peptonophilus sp. nov., a fast-growing, extremely thermophilic archaebacterium isolated from deep-sea hydrothermal vents JOURNAL Arch. Microbiol. 164 (3), 159-164 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D37983|g1066013 isolate_name= SM-2 BASE COUNT 182 a 253 c 353 g 136 t 1000 others ORIGIN 1 .......... .......... .......... UCCGGU(UGA )UCCC|-GCC GGAAGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAUGGG ---------- ---GCGCGC( 121 -UC----U-) GCGCGC---- -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GUGGCUAAUC CCCCAUA--G 241 GCCU--GAGG UAC-(UGGAA G--)-GUC-C UCAG-GGC-- GGA-AGGGGC ---------- 301 (--AUCU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCCCA AUGCGG(GCA A)-CGCGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------GUG GA--AUA--G 601 CC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGGCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCGCUAUU AUUGGGC|CU AAAGCGCCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-GGCU -UGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CCCUGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCAGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCU CCCGG-UGCC 1081 GGAGG(GAAG )CCGUUAAGC CCCC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Tc.spSM2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermococcus sp. str. SM-2 JCM 9654. ACCESSION No information KEYWORDS No information. SOURCE Thermococcus sp. str. SM-2 JCM 9654. ORGANISM Thermococcus sp. REFERENCE 1 AUTHORS Gonzalez,J.M., Kato,C. and Horikoshi,K. TITLE Thermococcus peptonophilus sp. nov., a fast-growing, extremely thermophilic archaebacterium isolated from deep-sea hydrothermal vents JOURNAL Arch. Microbiol. 164, 159-164 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 9654 Sequence information (bases 1 to 1924) Corresponding GenBank entry: D37983|g1066013 Ref 1: Gonzalez didn't do & don't tell source of seq; dup of Tc.celer? isolate_name= SM-2 BASE COUNT 182 a 253 c 353 g 136 t 1000 others ORIGIN 1 .......... .......... .......... UCCGGU(UGA )UCCC|-GCC GGAAGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAUGGG ---------- ---GCGCGC( 121 -UC----U-) GCGCGC---- -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GUGGCUAAUC CCCCAUA--G 241 GCCU--GAGG UAC-(UGGAA G--)-GUC-C UCAG-GGC-- GGA-AGGGGC ---------- 301 (--AUCU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCCCA AUGCGG(GCA A)-CGCGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------GUG GA--AUA--G 601 CC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGGCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCGCUAUU AUUGGGC|CU AAAGCGCCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-GGCU -UGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CCCUGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCAGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCU CCCGG-UGCC 1081 GGAGG(GAAG )CCGUUAAGC CCCC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Tc.peptphl 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermococcus peptonophilus str. OG-1 JCM 9653 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermococcus peptonophilus str. OG-1 JCM 9653 (T). ORGANISM Thermococcus peptonophilus. REFERENCE 1 AUTHORS Gonzalez,J.M., Kato,C. and Horikoshi,K. TITLE Thermococcus peptonophilus sp. nov., a fast-growing, extremely thermophilic archaebacterium isolated from deep-sea hydrothermal vents JOURNAL Arch. Microbiol. 164 (3), 159-164 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 9653 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: D37982|g1066012 Former RDP Sids: Tc.spOG1 isolate_name= OG-1 BASE COUNT 182 a 254 c 354 g 134 t 1000 others ORIGIN 1 ~......... .......... .......... UCCGGU(UGA )UCCU|-GCC GGAAGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAUGGG ---------- ---GCGCGC( 121 -UC----U-) GCGCGC---- -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GCCU--GAGG UAC-(UGGAA G--)-GUC-C UCAG-GCC-- GAG-AGGGGC ---------- 301 (--AUCU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UCC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GGGACCC CCAGCG-CC- ---------- (----)---- -------GUG GA--AUA--G 601 CC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCGCUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-G-CU -UGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CCCUGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCAGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCG CCCGG-UGCC 1081 GGAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGAGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Pc.spKOD1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrococcus sp. str. KOD1. ACCESSION No information KEYWORDS No information. SOURCE Pyrococcus sp. str. KOD1. ORGANISM Pyrococcus sp. REFERENCE 1 AUTHORS Morikawa,M., Izawa,Y., Rashid,N., Hoaki,T. and Imanaka,T. TITLE Purification and characterization of thermostable thiol protease from a newly isolated hyperthermophile Pyrococcus sp. JOURNAL Appl. Environ. Microbiol. 60, 4559-4566 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D38650|g563776 isolate_name= KOD1 NB: 65r-90r are not well aligned BASE COUNT 288 a 428 c 547 g 219 t 442 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAUGGG ---------- ----GCGCG( 121 -CU----CU) CG-GAC---- -----|---G CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(GGAAA)CU GGGGCUAAUC CCCCAUA--G 241 GCCU--GAGG UAC-(UGGAA G--)-GUC-C UCAG-GCC-- GAA-AGGGGC ---------- 301 (--AUCU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| C-GAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(-CA A)CCG-GACG 541 GG|GGGACCC C-AGUG-CC- ---------- (----)---- -------GUG GC--AUA--G 601 CC--GACUU| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCGCUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-GGCU -UGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CC-UGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCAGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCG CCCGG-UGCC 1081 GGAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GCUGAAGG-U 1321 CUUGCC-GGA -CACGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCAC (UUAAGU)GU GGUAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGUCC 1441 UCCCC----- (GCU--)--- GGGGA-GGA| GGCACU-CUG GGGGGACCGC CGGC(GA-UA 1501 A)GCCGGAGG AAGGAGCGGG CGACGGUAGG UCAGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGCGCUACA AUGGGCGGGA CAAUGGGA-U -CCGACCCC( GAAA)GGGGA AGGGAAUCCC 1621 CUAAACCCGC CCUCAGUUCG GAUCGCGGGC (UGCAGCUC) GCCCGCGUGA AGCUGGAAUC 1681 CCUAGUACCC GCGUG(UCAU CAU)CGCGCG GCGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACU CCACCCGAGC GGGGUCC-GG GUGA-G-GCC UG-GUCU--C CC---(--UU 1801 CG-)---GG- -AG-GCC-GG GUCGAGCCU- GGGCUC-CGU GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(G-AA) CCUACGCUCC GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Tc.stetter 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermococcus stetteri.. ACCESSION No information KEYWORDS No information. SOURCE Thermococcus stetteri. ORGANISM Thermococcus stetteri. REFERENCE 1 AUTHORS Gonzalez,J.M., Kato,C. and Horikoshi,K. TITLE Thermococcus peptonophilus sp. nov., a fast-growing, extremely thermophilic archaebacterium isolated from deep-sea hydrothermal vents JOURNAL Arch. Microbiol. 164, 159-164 (1995) STANDARD No information COMMENTS Ref 1: Gonzalez didn't do & don't tell source of seq; dup of Tc.celer? NB: data hand entered from paper BASE COUNT 50 a 69 c 89 g 35 t 1681 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)..UC-C UCAG-GCC-- GAA-AGGGGC ---------- 301 (---UCU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- GUNN)GGUCC 481 AGUCCC(UAC N)GGGCNCNG CNGGCGCN-A ANNNUCCGCN AUGCGG(GCA A)CCNCGACG 541 GG|GGGACCC CCAGUN-NN- ---------- (----)---- -------NUG GN--AAU--N 601 CC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUNAN. .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Tc.celer2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermococcus celer.. ACCESSION No information KEYWORDS No information. SOURCE Thermococcus celer. ORGANISM Thermococcus celer. REFERENCE 1 AUTHORS Gonzalez,J.M., Kato,C. and Horikoshi,K. TITLE Thermococcus peptonophilus sp. nov., a fast-growing, extremely thermophilic archaebacterium isolated from deep-sea hydrothermal vents JOURNAL Arch. Microbiol. 164, 159-164 (1995) STANDARD No information COMMENTS Ref 1: Gonzalez didn't do & don't tell source of seq; dup of Tc.celer? NB: data hand entered from paper BASE COUNT 56 a 77 c 97 g 32 t 1662 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)..UC-C UCAG-GCC-- GAA-AGGGGC ---------- 301 (---UCU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GCA A)CC-CGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------GUG GC--AAC--G 601 CC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAG. .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Tc.celer 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermococcus celer str. VU 13 DSM 2476. ACCESSION No information KEYWORDS No information. SOURCE Thermococcus celer str. VU 13 DSM 2476. ORGANISM Thermococcus celer. REFERENCE 1 AUTHORS Achenbach-Richter,L., Gupta,R., Zillig,W. and Woese,C.R. TITLE Rooting the archaebacterial tree: The pivotal role of Thermococcus celer in archaebacterial evolution JOURNAL Syst. Appl. Microbiol. 10, 231-240 (1988) STANDARD No information COMMENTS Organism information Culture collection: DSM 2476 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M21529 isolate_name= VU 13 BASE COUNT 291 a 431 c 546 g 218 t 438 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGAGGCC-AC 61 UGCUAUGGGG GUCCGACUAA GCCAUGCGA- --GUCAUGGG ---------- -----GCGC( 121 -CU---UGC) GCGC------ -----|---A CCGGCGGACG GCUCAGUAAC ACGUCGGUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GCCU--GAGG UAC-(UGGAA G--)-GUC-C UCAG-GCC-- GAA-AGGGGC ---------- 301 (---UCU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GGGACCC CCAGUG-CC- ---------- (----)---- -------GUG GC--AAC--G 601 CC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCGCUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCCCACG GC(UC-A)AC CGUGG-GGCU -UGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC CGGG|GGUAC CCCUGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCAGGGGGA CCGCCAGUGG C(GAAG)GCG C-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG ACGAAGGCCA GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCUGGC 1021 UGUAAAGGAU GCGGGCUA|G GUGUCGGGCG AGC-(U-UC- GA)--GCUCG CCCGG-UGCC 1081 GAAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACUACAAG GGGUGGAGCG -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CGGC--AGGA UGAAGGCCAG GCUGAAGG-U 1321 CUUGCC-GGA -CACGCCGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|ACC(GUGA 1381 )GGCGUCCAC (UUAAGU)GU GGUAACGAGC GAGACCCGCG |CCCCCAG-U UGC-CAGUCC 1441 UUCCC----- (GCU--)--- GGGGA-GGA| GGCACU-CUG GGGGGACCGC CGGC(GA-UA 1501 A)GCCGGAGG AAGGAGCGGG CGACGGUAGG UCAGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGCGCUACA AUGGGCGGGA CAAUGGGA-U -CCGACCCC( GAAA)GGGGA AGGGAAUCCC 1621 CUAAACCCGC CCCCAGUUCG GAUCGCGGGC (UGCAACUC) GCCCGCGUGA AGCUGGAAUC 1681 CCUAGUACCC GCGUG(UCAU CAU)CGCGCG GCGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACU CCACCCGAGC GGGGUCC-GG AUGA-G-GCC UG-AUCU--C CC---(--UU 1801 CG-)---GGG -AG-GUC-GG GUCGAGUCU- GGGCUC-CGU GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUACGGCUC GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Tc.profun2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermococcus profundus str. DT5432. ACCESSION No information KEYWORDS No information. SOURCE Thermococcus profundus str. DT5432. ORGANISM Thermococcus profundus. REFERENCE 1 AUTHORS Kobayashi,T., Kwak,Y.S., Akiba,T., Kudo,T. and Horikoshi,K. TITLE Thermococcus profundus sp. nov., a new hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent JOURNAL Syst. Appl. Microbiol. 17, 232-236 (1994) STANDARD No information COMMENTS isolate_name= DT5432 NB: data hand entered from paper BASE COUNT 82 a 128 c 169 g 63 t 1482 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)..UC-C UCAG-GCC-- GAA-AGGGGC ---------- 301 (---UUU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GGGACCC CCAGUN-CC- ---------- (----)---- -------GUG GC--AUC--G 601 CC--ACGGC| UUUUCCGGAG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAGG GCUGGGCA-A GGCCG-GUG( GCA--GCCGC CGCGGUAA)U 721 ACCGG-|CGG CCCGAGUGGU GGCCGCUAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GGC 781 CCGUAAG|-- UCCCUGGCG- AAAUCUCACG GC(UC-A)AC CGUGG-GGCU -UGCUGGGGA 841 UACUGCGG-G CCUU-GGGAC CGGGAGAGGC CGGG|GGUAC C......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Tc.profund 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermococcus profundus.. ACCESSION No information KEYWORDS No information. SOURCE Thermococcus profundus. ORGANISM Thermococcus profundus. REFERENCE 1 AUTHORS Gonzalez,J.M., Kato,C. and Horikoshi,K. TITLE Thermococcus peptonophilus sp. nov., a fast-growing, extremely thermophilic archaebacterium isolated from deep-sea hydrothermal vents JOURNAL Arch. Microbiol. 164, 159-164 (1995) STANDARD No information COMMENTS Ref 1: Gonzalez didn't do & don't tell source of seq; dup of Tc.celer? NB: data hand entered from paper BASE COUNT 54 a 77 c 97 g 34 t 1662 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)..UC-C UCAG-GCC-- GAA-AGGGGC ---------- 301 (---UUU--- )------|-- GCCC-GCCC- --GAGGAUGG |GCCGGCGG| CCGAUUA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCGA-AGAU CGGUACGGG| CCAU(GAGA) 421 GUGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CACG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GGGACCC CCAGUN-CC- ---------- (----)---- -------GUG GC--AUC--G 601 CC--ACGGC| UUUUCCGGAG U--------- ------(GUA CAAA--)--- ---------- 661 ----GCUCCG GG-AAUAAG. .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.1.5-METH 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.1.5 METHANOPYRALES. ACCESSION No information KEYWORDS No information. SOURCE 1.1.5 METHANOPYRALES. ORGANISM 1.1.5 METHANOPYRALES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Mpy.kandl1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Methanopyrus kandleri str. av19 DSM 6324. ACCESSION No information KEYWORDS No information. SOURCE Methanopyrus kandleri str. av19 DSM 6324. ORGANISM Methanopyrus kandleri. REFERENCE 1 AUTHORS Burggraff,S., Stetter,K.O., Rouviere,P. and Woese,C.R. TITLE Methanopyrus kandleri: An archaeal methanogen unrelated to all other known methanogens JOURNAL Syst. Appl. Microbiol. 14, 346-351 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 6324 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M59932 isolate_name= av19 BASE COUNT 289 a 456 c 574 g 194 t 411 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGAGGCC-AC 61 CGCUAUCGGG GUCCGACUAA GCCAUGCAA- --GUCGAGGG ---------- ---CCGCCC( 121 -GGCAAUGG) GGGCGG---- -----|---C CCGGCGGACG GCUCAGUAAC ACGUGGGUAA 181 CCUACCCUCG GGACGGGGAU AACCC--CGG C(-GAAA)GU GGGGCUAAUC CCCGAUA--G 241 GCGG--GGCG GCC-(UGGAA C--)-GGU-C CUCC-GCC-- GAA-A-GGGC CC--GGGC-- 301 (CCAUGCC-- )--GCCC|GG GUCC-GCCC- --GAGGAUGG |GCCUGCGG| CCGAUUA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-UAAU CGGUACGGG| CGGU(GAGA) 421 GCCG------ ---------- ----GAGCCC G|GAGACGGG GA(CUGAGA- CAAG)GCCCC 481 GGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GGGACCC CGAGUG-CC- ---------- (----)---- -----GUCGG GG-CAAAG-C 601 CCCGGCGGC| UGUACCGGGG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCCCCG GGUAGAAAGC GGCGGGCA-A GACCG-CUG( CCA--GCCGC CGCGGUAA)U 721 AGCGG-|CGC CGCAAGUGGU GGCCGCUUUU AUUGGGC|CU AAAGGGGCCG UAGCCG|GUC 781 CCGUGGG|-- UCCCCGCCG- AAAGCCCGCG GC(UU-A)AC CGCGG-GAGU -CGGCGGGGA 841 AACUGCGG-G ACUU-GGGAC CGGGAGAGGC CGGA|GGUAC CCCCGGGGUA GGG(GUGAAA 901 )UCCUGUCAU CCCGGGGGGA CCGCCAGUGG C(GAAG)GCG U-CCGGCUGG AACGGGUCCG 961 ACGGUGAGGG CCGAAAGCCG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGACUA|G GUGUUGGGGC GGC-(C-AC- GA)--GCCGC CCCAG-UGCC 1081 GUAGG(GAAG )CCGUUAAGU CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAC CGGUGGAGCC -UGCGGUUUA AUUGG(AUUC 1201 AACG)CCGGA AA--CCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GUUGACGA-C 1321 CUUGCC-GGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGCC GUCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGU)CA GGUAACGAGC GAGACCCCCG |CCCGCAG-U UGC-CAGCGG 1441 GCCCC----- (GUAA-)--- GGGGCGCCG| GGCACU-CUG CGGGGAUCGC CGCC(GU-UA 1501 A)GGCGGAUG AAAGUGGGGG CGACGGCAGG UCCGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGGGCUACA AUGGCGGGGA CAAUGGGA-U -CCGACCCC( GAAA)GGGGG AGGAAAUCCC 1621 CUAAACCCCG UCGUAGUUCG GAUUGCGGGC (UGCAACUC) GCCCGCAUGA AGGUGGAAUC 1681 GGUAGUAACC GUGCC(UCAG AAU)GGCACG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCACG CCACCCGAGC CCCCCGG-GG GCAA-G-CCC CC-GGUC--C -----(--GC 1801 AA-)-----G -GG-CUG-GG GGCGAGCCC- CCGGGG-GGU GAGGGGGGCG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.2-CRENAR 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2 CRENARCHAEOTA. ACCESSION No information KEYWORDS No information. SOURCE 1.2 CRENARCHAEOTA. ORGANISM 1.2 CRENARCHAEOTA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.2.1-CREN 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.1 CRENARCHAEOTA_GROUP_I. ACCESSION No information KEYWORDS No information. SOURCE 1.2.1 CRENARCHAEOTA_GROUP_I. ORGANISM 1.2.1 CRENARCHAEOTA_GROUP_I. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.2.1.1-PY 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.1.1 PYB.ISLANDICUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.1.1 PYB.ISLANDICUM_SUBGROUP. ORGANISM 1.2.1.1 PYB.ISLANDICUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Pyb.island 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrobaculum islandicum str. geo3. ACCESSION No information KEYWORDS No information. SOURCE Pyrobaculum islandicum str. geo3. ORGANISM Pyrobaculum islandicum. REFERENCE 1 AUTHORS Burggraf,S., Larsen,N., Woese,C.R. and Stetter,K.O. TITLE Pyrobaculum aerophilum An intron within the 16S ribosomal RNA gene of the archaeon JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 2547-2550 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L07511 isolate_name= geo3 BASE COUNT 289 a 438 c 541 g 177 t 479 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .....CG-AC 61 CGCUAUCGGG GUAGGGCUAA GCCAUGCGA- --GUCNCGCG ---------- -----CCCG( 121 -GGC--GCG) CGGG------ -----|---A GCGGCGCACG GCUCAGUAAC ACGUGCCUAA 181 CCUACCCUCG GGAGGGGGAU ACCCC--CG- G(-GAAA)CU GGGGUCAAUC CCCCAUA--G 241 GGGA--GGGG UGC-(UGGAA G--)-GCC-C CCUC-CCC-- NAA-AGGGA- ----U-GC-- 301 (-CGAUCC-- )--GCCG|CC AUCC-GCCC- --GAGGAUGG |GGNCACGG| CCCAUCA-G- 361 GUAGUUGGCG GG(UUAAAGG )CCCGCCAA| GCCGA-AGAC GGGUAGGGG| CGGU(GAGA) 421 GCCGU----- ---------- ----GAGCCC C|GAGAUCGG CA(CUGAGA- CAAG)GGCCG 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AUACUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GCUACCC CGAGUG-CC- ---------- (----)---- --------GG GC-GAAGA-G 601 CC---CGGC| UUUUGCCCGG U--------- ------(CUA AAAC--)--- ---------- 661 ----GCCGGG CG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CAC CGCGAGUGGU CGGGGUGUUU AUUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CGGCAAG|-- UCGCUCCUG- AAAUCCCCGG GC(UC-A)AC CCGGG-GGC- -GGGGGGCGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGCC|GGUAC UCCGGGGGUA GGG(GCGAAA 901 )UCCGUUAAU CCCCGGAGGA CCACCAGUGG C(GAAA)GCG G-GCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCAAA GGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 CGUAAACGAU GCGGGCUA|G CUGUCGGCCG GGC-(U-UA- GG)--GCCCG GCCGG-UGGC 1081 GAAGG(GAAA )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUNAAACU 1141 UAAA-GGAAU UGGCGGGGGG GCACCACAAG GGGUGAAGCU -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUCAC CCGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GCUAACGA-C 1321 CUUGCC-GGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UACCCC 1441 GUCC------ (UACG-)--- -GGGCGGGG| GGCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGUAUGCC CCGAAACCCC GGGGCUGCAC 1561 GCGAGCUGCA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 GUAAACCCCG CCCCAGUAGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCCCCU UGCACACACC 1741 GCCCGUCGCA CCACCCNAGG GAGCCCC-CU CNGA-G-GCC CC-UCGC--C -----(-GAC 1801 GA-)-----G -GU-GGG-GG GACGAGCAG- GGGGCU-CCC AAGGGGGGUG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) C......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS P.aerophil 1924 bp RNA RNA 15-APR-1993 DEFINITION Pyrobaculum aerophilum. str. im2; 16S ribosomal RNA. ACCESSION L07510 KEYWORDS 16S ribosomal RNA. SOURCE Pyrobaculum aerophilum. str. im2. ORGANISM Pyrobaculum aerophilum. REFERENCE 1 (bases 1 to 2210) AUTHORS Burggraf,S., Larsen,N., Woese,C.R. and Stetter,K.O. TITLE An intron within thw 16S ribosomal RNA ge of the archaeon Pyrobaculum aerophilum JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 2547-2550 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L07510 BASE COUNT 292 a 446 c 558 g 188 t 440 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NN NCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAGGGCUAA GCCAUGCGA- --GUGGU-CG ---------- ---CGCCGG( 121 -GGG---GC) CCGGG----- -----|---A GCGGCGCACG GCUCAGUAAC ACGUGCCUAA 181 CCUAACCUCG GGAGGGGGAC ACCCC--CG- G(-GAAA)CU GGGGUCAAUC CCCCAUA--G 241 GGGA--AGGG CGC-(UGGAA G--)-GCC-C CUUC-CCC-- GAA-AGGGAU ----CGGC-- 301 (-CGAUCC-- )--GCCG|CC GUCC-GCCC- --GAGGGUGG |GGGCACGG| CCCAUCA-G- 361 GUAGUUGGCG GG(UUAAAGG )CCCGCCAA| GCCGA-AGAC GGGUAGGGG| CGGU(GAGA) 421 GCCGC----- ---------- ----GAGCCC C|GAGAUCGG CA(CUGAGA- CAAG)GGCCG 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AUACUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GCUACCC CGANNN-NN- ---------- (----)---- --------GG GC-GAAGA-G 601 CC--CCGGC| UUUUNCCCGG U--------- ------(CUA AAAC--)--- ---------- 661 ----GCCGGG CG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGUGUUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CGNNAAG|-- UCGCUCCUG- AAAUCCCCGG GC(UC-A)AC CCGGG-GGC- -GGGGGGCGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGCC|GGUAC UCCGGGGGUA GGG(GCGAAA 901 )UCCGUUAAU CCCCGGAGGA CCACCAGUGG C(GAAA)GCG G-GCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCAAA GGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 CGUAAACGAU GCGGGCUA|G CUGUCGGUCG GGC-(U-UA- GG)--GCCCG GCCGG-UGGC 1081 GAAGG(GAAA )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGG GCACCACAAG GGGUGAAGCU -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUCAC CCGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GCUAACGA-C 1321 CUUGCC-GGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCG |CCCCUAG-U UGC-UACCCC 1441 GUCC------ (UUCG-)--- -GGACGGGG| GGCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGUAUGCC CCGAAACCCC GGGGCUGCAC 1561 GCGAGCUGCA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 GUAAACCCCG CCCCAGUAGG GAUCGAGGGU (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCCCCU UGCACACACC 1741 GCCCGUCGCA CCACCCGAGG GAGCCCU-CU GCGA-G-GCC CC-UCGC--C -----(-GAA 1801 GA-)-----G -GU-GGG-GG GACGAGCAG- GGGGCU-CCC AAGGGGGGUG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUNN ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Pyb.aeroph 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrobaculum aerophilum str. IM2 DSM 7523. ACCESSION No information KEYWORDS No information. SOURCE Pyrobaculum aerophilum str. IM2 DSM 7523. ORGANISM Pyrobaculum aerophilum. REFERENCE 1 AUTHORS Trincone,A. and Stetter,K. Volkl,P., Huber,R., Drobner,E., Rachel,R., Burggraf,S., TITLE hyperthemophiic archaeum Pyrobaculum aerophium sp. nov., a novel nitrate-reducing JOURNAL Appl. Environ. Microbiol. 59, 2918-2926 (1993) STANDARD No information REFERENCE 2 AUTHORS Burggraf,S., Larsen,N., Woese,C.R. and Stetter,K.O. TITLE An intron within the 16S ribosomal RNA gene of the archaeon Pyrobaculum aerophilum JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 2547-2550 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 7523 Sequence information (bases 1 to 1924) Corresponding GenBank entry: L07510 isolate_name= IM2 NB: presumed primer sequence removed before release 4.0. BASE COUNT 288 a 433 c 547 g 180 t 476 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .....CG-AC 61 CGCUAUCGGG GUAGGGCUAA GCCAUGCGA- --GUGGU-CG ---------- ---CGCCGG( 121 -GGG---GC) CCGGG----- -----|---A GCGGCGCACG GCUCAGUAAC ACGUGCCUAA 181 CCUAACCUCG GGAGGGGGAC ACCCC--CG- G(-GAAA)CU GGGGUCAAUC CCCCAUA--G 241 GGGA--AGGG CGC-(UGGAA G--)-GCC-C CUUC-CCC-- GAA-AGGGAU ----CGGC-- 301 (-CGAUCC-- )--GCCG|CC GUCC-GCCC- --GAGGGUGG |GGGCACGG| CCCAUCA-G- 361 GUAGUUGGCG GG(UUAAAGG )CCCGCCAA| GCCGA-AGAC GGGUAGGGG| CGGU(GAGA) 421 GCCGC----- ---------- ----GAGCCC C|GAGAUCGG CA(CUGAGA- CAAG)GGCCG 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AUACUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GCUACCC CGANNN-NN- ---------- (----)---- --------GG GC-GAAGA-G 601 CC--CCGGC| UUUUNCCCGG U--------- ------(CUA AAAC--)--- ---------- 661 ----GCCGGG CG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGUGUUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CGNNAAG|-- UCGCUCCUG- AAAUCCCCGG GC(UC-A)AC CCGGG-GGC- -GGGGGGCGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGCC|GGUAC UCCGGGGGUA GGG(GCGAAA 901 )UCCGUUAAU CCCCGGAGGA CCACCAGUGG C(GAAA)GCG G-GCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCAAA GGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 CGUAAACGAU GCGGGCUA|G CUGUCGGUCG GGC-(U-UA- GG)--GCCCG GCCGG-UGGC 1081 GAAGG(GAAA )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGG GCACCACAAG GGGUGAAGCU -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUCAC CCGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GCUAACGA-C 1321 CUUGCC-GGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCG |CCCCUAG-U UGC-UACCCC 1441 GUCC------ (UUCG-)--- -GGACGGGG| GGCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGUAUGCC CCGAAACCCC GGGGCUGCAC 1561 GCGAGCUGCA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 GUAAACCCCG CCCCAGUAGG GAUCGAGGGU (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCCCCU UGCACACACC 1741 GCCCGUCGCA CCACCCGAGG GAGCCCU-CU GCGA-G-GCC CC-UCGC--C -----(-GAA 1801 GA-)-----G -GU-GGG-GG GACGAGCAG- GGGGCU-CCC AAGGGGGGUG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CC........ .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.pJP8 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25309 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 87 a 141 c 173 g 42 t 1481 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGACCCG-AC 61 CGCUAUCGGG GUAGGGCUAA GCCAUGCGA- --GUCG--CG ---------- ---CGCCCG( 121 -GGGGCSSC) CGGG------ -----|---A GCGGCGCACG GCUCAGUAAC ACGUGCCCAA 181 CCUACCCUCG GGAGGGGGAC ACCCC--CG- G(-GAAA)CU GGGGCCAAUN CCCCAUA--G 241 GGGA--AGGG CGC-(UGGAA G--)-GCC-C CUNN-CCC-- GAA-AGGGAC GG--CGGC-- 301 (-CGAUCC-- )--GCCG|CC GCNC-GCCC- --GAGGAUGG |GGGCACGG| CCCAUCA-G- 361 GUAGUUGGCG GG(UUAAAGG )CCCGCCAA| GCCGA-AGAC GGGUAGGGG| CGGU(GAGA) 421 GCCGC----- ---------- ----GAGCCC C|GAGAUCGG CA(CUGAGA- CAAG)GGCCG 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AUACUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GCUACCC CGAGUG-CC- ---------- (----)---- --------GG GC-GAAGA-G 601 CC---CGGC| UUUUGCCCGG U--------- ------(CUA AAAC--)--- ---------- 661 ----GCCGGG AG-AAUAAGC GGGGGG.... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS T.modestiu 1924 bp RNA RNA 03-SEP-1998 DEFINITION Thermocladium modestius.; 16S ribosomal RNA. ACCESSION AB0052 6 KEYWORDS 16S ribosomal RNA. SOURCE Thermocladium modestius. ORGANISM Thermocladium modestius. REFERENCE 1 (sites) AUTHORS Itoh,T., Suzuki,K. and Nakase,T. TITLE rod-shaped, extremely thermophilic crenarchaeote Thermocladium modestius gen. nov., sp. nov., a new genus of JOURNAL Int. J. Syst. Bacteriol. 48 Pt 3, 879-887 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1469) AUTHORS Itoh,T. TITLE Direct Submission JOURNAL Submitted (30-JUN-1997) to the DDBJ/EMBL/GenBank databases. Takashi Itoh, The Institute of Physical and Chemical Research, Japan Collection of Microorganisms; Hirosawa, Wako-shi, Saitama 351-0198, Japan (E-mail: ito@ulmus.riken.go.jp, Tel:048-467-9560, Fax:048-462-4617) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AB005296 BASE COUNT 305 a 404 c 535 g 225 t 455 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ )~~~~|~~~~ ~GACCCG-AC 61 CGCUAUCGGG GUGAGGCUUA GCCAUGCGA- --GUCGGAUG ---------- ---UCUUGG( 121 -GGA-ucCG) CCAGGG---- -----|---C AUGGCGGACG GCUCAGUAAC ACGUGGCCAA 181 CCUACCCUAG GGAGGGGAAU AACCC--CG- G(-GAAA)CU GGGGCUAAUU CCCCAUA--G 241 GAGA--GGGA AGC-(UGGAA G--)-GCU-C CCUC-CCC-- GAA-AGGAAC CG--CGUC-- 301 (-CGGCACCC )--GGCG|CG AUUC-GCCC- --UAGGAUGG |GGCUGCGG| UCCAUCAUG- 361 GUUGUUGGUG GG(GUAAUGG )CCCACCAA| GCCGA-AGAC GGAUGGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|GAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAU G)GGGUGCAG CAGGCGCG-A AACCUCCGCA AUGCAG(GAA A)CUGCGACG 541 GG|GUUACCC CGAGUG-CU- ---------- (----)---- --------AC CC-GAUGA-G 601 GG---UAGC| UUUUCCCCGG U--------- ------(GUA GAAA--)--- ---------- 661 ----GCCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGUGAUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGGCAAG|CC UUGCU-CUG- AAAUCCCCGG GC(UC-A)AC CCGGG-GGC- -UGGGGAAGG 841 UACUGCCG-G GCUU-GGGGG CGGGAGAGGC CGAG|GGUAC UCCUGGGGUA GGG(GCGAAA 901 )UCCGAUAAU CCCAGGAGGA CCACCAGUGG C(GGAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCUG GGGGAGCAAA GGGG(AUUAG AUAC)CCCUG UAGUCCCAGC 1021 UGUAAACUAU GCGGGCUA|G CUGUUGGGCG GGC-(U-UA- GA)--GCCCG CCCAG-UGGC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGG GCACCACAAG GGGUGAAGCU -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUUAC CCAGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AAGA UGAUGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -UGAGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GCU(GUGA 1381 )AGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CUUCUAG-U UGC-CACCCG 1441 GUUC------ (UUCG-)--- -GAAUCGGG| GGCACA-CUA GAGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGUAUGCC CCGAAACCCU GGGGCCGCAC 1561 GCGAGCUGCA AUGGCUGGAA CAGCGGGA-U -UCGACCCC( GAGA)GGGGG AGAUGAUCCC 1621 GUAAAUCCAG CCCCAGUAGG GAUCGAGGGU (UGCAAUUC) ACCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCCCCU UGCACACACC 1741 GCCCGUCGCG CCAUCCAAGG GAGUUUC-UA GCGA-G-GCU CC-UUGG--C -----(--UA 1801 GC-)-----G -CC-GGG-GA GUCGAGCUG- GGGGCU-CCC GAGGAGGGCG AAGUCGUAAC 1861 AAGGUGGCCG UAGG(GGAA) CCUG~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS C.maquilin 1924 bp RNA RNA 13-JAN-1999 DEFINITION Caldivirga maquilingensis.; 16S ribosomal RNA; 16S rRNA. ACCESSION AB0139 6 KEYWORDS 16S ribosomal RNA; 16S rRNA. SOURCE Caldivirga maquilingensis. ORGANISM Caldivirga maquilingensis. REFERENCE 1 (sites) AUTHORS Itoh,T., Suzuki,K., Sanchez,P.C. and Nakase,T. TITLE spring in the Philippines A new genus of the rod-shaped crenarchaeote, Caldivigra maquilingensis gen. nov., sp. nov., isolated from a hot JOURNAL Int. J. Syst. Bacteriol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1642) AUTHORS Itoh,T. TITLE Direct Submission JOURNAL Submitted (14-MAY-1998) to the DDBJ/EMBL/GenBank databases. Takashi Itoh, The Institute of Physical and Chemical Research, Japan Collection of Microorganisms; Hirosawa, Wako-shi, Saitama 351-0198, Japan (E-mail: ito@ulmus.riken.go.jp, Tel:048-467-9560, Fax:048-462-4617) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AB013926 BASE COUNT 288 a 428 c 544 g 205 t 459 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ )~~~~|~~~~ ~GACCCG-AC 61 CGCUAUCGGG GUGGGGCUUA GCCAUGCGA- --GUCAAGCG ---------- ---CCCCAG( 121 -GGA-CCCG) CUGGGG---- -----|---U GCGGCGCACG GCUCAGUAAC ACGUGGCCAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCCAUA--G 241 GGGA--AGGG UGC-(UGGAA G--)-GCC-C CCUC-CCC-- GAA-AAGAGC CA--CGUC-- 301 (-CGGUACCC )--GGCG|CG GCUC-GCCC- --GAGGAUGG |GGCUACGG| CCCAUCAUG- 361 GUAGCUGGCG GG(GUAACGG )CCCGCCAG| GCCGA-AGAC GGGUGGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|GAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAU G)GGGUGCAG CAGGCUCG-A AUACUCCGCA AUGCGG(UAA C)CCGCGACG 541 GG|GCCACCC CGAGUG-CC- ---------- (----)---- --------GC CC-GAUGA-G 601 GG---CGGC| UUUUCCCCCG U--------- ------(GUA AGUA--)--- ---------- 661 ----GCUGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGUGUUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGGUAAG|-- UCACCCCUG- AAAUCCAUGG GC(UC-A)AC CCAUG-GGC- -CGGGGGUGA 841 UACUGCCG-G GCUU-GGGGG UGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCGAUAAU CCCGGGAGGA CCACCAGUGG C(GGAA)GCG C-UCGGCUGG AACACGCCCG 961 ACGGUGAGGG GCGAAAGCUG GGGGAGCAAA GGGG(AUUAG AUAC)CCCUG UAGUCCCAGC 1021 UGUAAACGAU GCGGGCUA|G CUGUUGGGUG GGC-(U-UA- GU---GCCCG CCCAG-UGGC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGG GCACCACAAG GGGUGAAGCU -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUCAC CCGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GCUAACGA-C 1321 CUUGCC-GGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCAG (UUAAGU)CU GGCAACGAGC GCGACCCCCG |CUCCCUG-U UGC-UACCCU 1441 ACCC------ (UUCG-)--- -GGGUGGGG| GGCACA-CAG GGAGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGUAUGCC CCGAAACCCC GGGGCUGCAC 1561 GCGAGCUGCA AUGGCGGGGA CAGCGGGU-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 GUAAACCCCG CCCCAGUAGG AAUCGAGGGC (UGUAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCCCCU UGCACACACC 1741 GCCCGUCGCG CCACCCGAGG GGAUCCU-UA ACGA-G-GCC CC---c---- uggg-(---u 1801 aa-)------ -cu-ggg-gg guCGAGUUG- GGGG-U-CCC AAGGGGGGCG AAGUCGUAAC 1861 AAGGUGGCCG UAGG(GGAA) CCUG~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS T.sp.IC033 1924 bp RNA RNA 02-OCT-1998 DEFINITION Thermoproteus sp. IC-033.; 16S rRNA; 16S ribosomal RNA. ACCESSION AB0096 6 KEYWORDS 16S rRNA; 16S ribosomal RNA. SOURCE Thermoproteus sp. IC-033. ORGANISM Thermoproteus sp. IC-033. REFERENCE 1 (sites) AUTHORS Itoh,T., Suzuki,K. and Nakase,T. TITLE Occurrence of introns in the 16S rRNA genes of members of the genus thermoproteus JOURNAL Arch. Microbiol. 170 (3), 155-161 (1998) STANDARD No information REFERENCE 2 (bases 1 to 4179) AUTHORS Itoh,T. TITLE Direct Submission JOURNAL Submitted (09-DEC-1997) to the DDBJ/EMBL/GenBank databases. Takashi Itoh, The Institute of Physical and Chemical Research, Japan Collection of Microorganisms; Hirosawa, Wako-shi, Saitama 351-0198, Japan (E-mail: ito@ulmus.riken.go.jp, Tel:048-467-9560, Fax:048-462-4617) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AB009616 BASE COUNT 281 a 431 c 542 g 183 t 487 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ )~~~~|~~~~ ~GACCUG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGCGA- --GUCGCGCG ---------- ----CCCGG( 121 -GG----CG) CNGGG----- -----|---C GCGGCGCACG GCUCAGUAAC ACGUGCCCAA 181 CCUAACCUCG GGAGGGGGAC AACCC--CG- G(-GAAA)CU GGGGCUGAUC CCCCAUA--G 241 GGGA--AGGG CGC-(UGGAA G--)-GCC-C CUUC-CUC-- UAA-AGGGAU CU--CGGG-- 301 (-CGAUCU-- )--CCCG|AG GUCC-GCCC- --GAGGGUGG |GGGCACGG| CCUAUCA-G- 361 GUAGUCGGCG GG(GUAACGG )CCCGCCAA| GCCGA-AGAC GGGUAGGGG| CGGU(GAGA) 421 GCCGU----- ---------- ----GAGCCC C|GAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AUACUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GCCACCC CGAGUG-CC- ---------- (----)---- --------GG GC-GAAAA-G 601 CC---CGGC| UUUUGCCCGG U--------- ------(GUA AGGA--)--- ---------- 661 ----GCCGGG CG-AAUAAGC GGGGGGUA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CAGGGUGAUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CGGCAAG|-- UCGCUCCUG- AAAUCCCCGG GC(UC-A)AC CCGGG-GGC- -UGGGGGCGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGCC|GGUAC UCCGGGGGUA GGG(GCGAAA 901 )UCCUAUAAU CCCCGGAGGA CCACCAGUGG C(GAAA)GCG G-GCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCAAA GGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 CGUAAACGAU GCGGGCUA|G CUGUCGGCCG GGC-(U-UA- GG)--GCCCG GCCGG-UGGC 1081 GUAGG(GAAA )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGG GCACCACAAG GGGUGAAGCU -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUUAC CCGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GCUAACGA-C 1321 CUUGCC-GGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UUCCCC 1441 GCUC------ (UUCG-)--- -GGGCGGGG| GGCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGUAUGCC CCG-AACCCC GGGGCUGCAC 1561 GCGAGCUGCA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 GUAAACCCCG CCCCAGUAGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACAUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCCCCU UGCACACACC 1741 GCCCGUCGCA CCACCCGAGG GGGUUCU-CU GCGA-G-GCC CC-UCGC--U UGGG-(--GC 1801 AA-)-CCCAG -GU-GGG-GG GACGAGCAG- AGAACC-CCC GAGGGGGGUG AA~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS T.sp.IC061 1924 bp RNA RNA 02-OCT-1998 DEFINITION Thermoproteus sp. IC-061.; 16S rRNA; 16S ribosomal RNA. ACCESSION AB0096 7 KEYWORDS 16S rRNA; 16S ribosomal RNA. SOURCE Thermoproteus sp. IC-061. ORGANISM Thermoproteus sp. IC-061. REFERENCE 1 (sites) AUTHORS Itoh,T., Suzuki,K. and Nakase,T. TITLE Occurrence of introns in the 16S rRNA genes of members of the genus thermoproteus JOURNAL Arch. Microbiol. 170 (3), 155-161 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2923) AUTHORS Itoh,T. TITLE Direct Submission JOURNAL Submitted (09-DEC-1997) to the DDBJ/EMBL/GenBank databases. Takashi Itoh, The Institute of Physical and Chemical Research, Japan Collection of Microorganisms; Hirosawa, Wako-shi, Saitama 351-0198, Japan (E-mail: ito@ulmus.riken.go.jp, Tel:048-467-9560, Fax:048-462-4617) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AB009617 BASE COUNT 280 a 430 c 546 g 183 t 485 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~GACCUG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGCGA- --GUCGCGCG ---------- ----CCCGG( 121 -GG----CG) CCGGG----- -----|---C GCGGCGCACG GCUCAGUAAC ACGUGCCCAA 181 CCUAACCUCG GGAGGGGGAC AACCC--CG- G(-GAAA)CU GGGGCUGAUC CCCCAUA--G 241 GGGA--AGGG CGC-(UGGAA G--)-GCC-C CUUC-CUC-- UAA-AGGGAU CU--CGGG-- 301 (-CGAUCU-- )--CCCG|AG GUCC-GCCC- --GAGGGUGG |GGGCACGG| CCUAUCA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-AGAC GGGUAGGGG| CGGU(GAGA) 421 GCCGU----- ---------- ----GAGCCC C|GAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGUGCAG GAGGCGCG-A AUACUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GCCACCC CGAGUG-CC- ---------- (----)---- --------GG GC-GAAGA-G 601 CC---CGGC| UUUUGCCCGG U--------- ------(GUA AGGA--)--- ---------- 661 ----GCCGGG CG-AAUAAGC GGGGGGUA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CAGGGUGAUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CGGCAAG|-- UCGCUCCUG- AAAUCCCCGG GC(UC-A)AC CCGGG-GGC- -GGGGGGCGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGCC|GGUAC UCCGGGGGUA GGG(GCGAAA 901 )UCCUAUAAU CCCCGGAGGA CCACCAGUGG C(GAAA)GCG G-GCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCAAA GGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 CGUAAACGAU GCGGGCUA|G CUGUCGGCCG GGC-(U-UA- GG)--GCCCG GCCGG-UGGC 1081 GUAGG(GAAA )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGG GCACCACAAG GGGUGAAGCU -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUUAC CCGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GCUAACGA-C 1321 CUUGCC-GGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UUCCCC 1441 GCUC------ (UUCG-)--- -GGGCGGGG| GGCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGUAUGCC CCGAAACCCC GGGGCUGCAC 1561 GCGAGCUGCA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 GUAAACCCCG CCCCAGUAGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCCCCU UGCACACACC 1741 GCCCGUCGCA CCACCCGAGG GGGUUCU-CU GCGA-G-GCC CC-UCGC--U UGGG-(--GC 1801 AA-)-CCCAG -GU-GGG-GG GACGAGCAG- AGAACC-CCC GAGGGGGGUG AA~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS T.neutroph 1924 bp RNA RNA 02-OCT-1998 DEFINITION Thermoproteus neutrophilus.; 16S rRNA; 16S ribosomal RNA. ACCESSION AB0096 8 KEYWORDS 16S rRNA; 16S ribosomal RNA. SOURCE Thermoproteus neutrophilus. ORGANISM Thermoproteus neutrophilus. REFERENCE 1 (sites) AUTHORS Itoh,T., Suzuki,K. and Nakase,T. TITLE Occurrence of introns in the 16S rRNA genes of members of the genus thermoproteus JOURNAL Arch. Microbiol. 170 (3), 155-161 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2130) AUTHORS Itoh,T. TITLE Direct Submission JOURNAL Submitted (09-DEC-1997) to the DDBJ/EMBL/GenBank databases. Takashi Itoh, The Institute of Physical and Chemical Research, Japan Collection of Microorganisms; Hirosawa, Wako-shi, Saitama 351-0198, Japan (E-mail: ito@ulmus.riken.go.jp, Tel:048-467-9560, Fax:048-462-4617) STANDARD No information COMMENTS Organism information Culture collection: JCM 9278 Sequence information (bases 1 to 1924) Corresponding GenBank entry: AB009618 BASE COUNT 285 a 438 c 538 g 171 t 492 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ )~~~~|~~~~ ~GACCCG-AC 61 CGCUAUCGGG GUAGGGCUAA GCCAUGCGA- --GUCGCNCG ---------- ----CCCGG( 121 -GG--gcgc) CCGGG----- -----|---A GCGGCGCACG GCUCAGUAAC ACGUGCCCAA 181 CCUACCCUCG GGAGGGGGAC ACCCC--CG- G(-GAAA)CU GGGGCCAAUC CCCCAUA--G 241 GGGA--GGGG CGC-(UGGAA G--)-GCC-C CCUC-CCC-- CAA-AGGGAU GG--CGGC-- 301 (-CGAUCC-- )--GCCG|CC AUCC-GCCC- --GAGGAUGG |GGGCACGG| CCCAUCA-G- 361 GUAGUUGGCG GG(UUAAAGG )CCCGCCAA| GCCGA-AGAC GGGUAGGGG| CGGU(GAGA) 421 GCCGC----- ---------- ----GAGCCC C|GAGAUCGG CA(CUGAGA- CAAG)GGCCG 481 AGG-CC(UAC G)GGGUGCAG CAGGCGCG-A AUACUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GCUACCC CGAGUG-CC- ---------- (----)---- --------GG GC-GAAGA-G 601 CC---CGGC| UUUUGCCCGG U--------- ------(CUA AAAA------ ---------- 661 ----GCCGGG AG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGUGUUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CGGCAAG|-- UCGCUCCUG- AAAUCCCAGG GC-CCaac-c cuggg-g-c- -gGGGGGCGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGCC|GGUAC UCCGGGGGUA GGG(GCGAAA 901 )UCCGUUAAU CCCCGGAGGA CCACCAGUGG C(GAAA)GCG G-GCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCAAA GGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 CGUAAACGAU GCGGGCUA|G CUGUCGGCCG GGC-(U-UA- GG)--GCCCG GCCGG-UGGC 1081 GAAGG(GAAA )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGG GCACCACAAG GGGUGAAGCU -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUCAC CCGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GCUAACGA-C 1321 CUUGCC-GGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UACCCC 1441 GUCC------ (UACG-)--- -GGACGGGG| GGCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGUAUGCC CCGAAACCCC GGGGCUGCAC 1561 GCGAGCUGCA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 GUAAACCCCG CCCCAGUAGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCCCCU UGCACACACC 1741 GCCCGUCGCA CCACCCGAGG GAGCCCU-CU GCGA-G-GCC CC-UUGC--C --------ga 1801 cg------AG -GU-GGG-GG GACGAGCAG- GGGGCU-CCC AAGGGGGGUG AA~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Thp.tenax 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermoproteus tenax.. ACCESSION No information KEYWORDS No information. SOURCE Thermoproteus tenax. ORGANISM Thermoproteus tenax. REFERENCE 1 AUTHORS Leinfelder,W., Jarsch,M. and Bock,A. TITLE archaebacterium Thermoproteus tenax: Sequence of the 16S rRNA gene The phylogenetic position of the sulfur-dependent JOURNAL Syst. Appl. Microbiol. 6, 164-170 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M35966|g176260 NB: GB entry has 'U' at 1527r GB entry has extra 'G' between 1144-5r BASE COUNT 297 a 449 c 562 g 195 t 421 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA ACCGGU(UGA )UCCU|-GCC GGACCUG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGCGA- --GUCGCGCG ---------- ----CCCGG( 121 -GG----CG) CCGGG----- -----|---C GCGGCGCACG GCUCAGUAAC ACGUACCCAA 181 CCUAACCUCG GGAGGGGGAC AACCC--CG- G(-GAAA)CU GGGGCUGAUC CCCCAUA--G 241 GGGA--AGGG CGC-(UGGAA G--)-GCC-C CUUC-CUC-- CAA-AGGGAU CG--CGGG-- 301 (-CGAUCU-- )--CCCG|CG GUCC-GCCC- --GAGGGUGG |GGGUACGG| CCCAUCA-G- 361 GUUGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-AGAC GGGUAGGGG| CGGU(GAGA) 421 GCCGU----- ---------- ----GAGCCC C|GAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGUGCAG CAGGCGCG-A AUACUCCGCA AUGCGG(GCA A)CCGCGACG 541 GG|GCCACCC CGAGUG-CC- ---------- (----)---- --------GG GC-GAAGA-G 601 CC---CGGC| UUUUGCCCGG U--------- ------(GUA AGGA--)--- ---------- 661 ----GCCGGG CG-AAUAAGC GGGGGGUA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CAGGGUGAUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CGGCAAG|-- UCGCUCCUG- AAAUCCCCAG GC(UC-A)AC CUGGG-GGC- -AGGGGGCGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGCC|GGUAC UCCGGGGGUA GGG(GCGAAA 901 )UCCUAUAAU CCCCGGAGGA CCACCAGUGG C(GAAA)GCG G-GCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCAAA GGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 CGUAAACGAU GCGGGCUA|G CUGUCGGCCG GGC-(U-UA- GG)--GCCCG GCCGG-UGGC 1081 GUAGG(GAAA )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGG GCACCACAAG GGGUGAAGCU -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUUAC CCGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GCUAACGA-C 1321 CUUGCC-GGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGUC GUCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UACCCC 1441 GCUC------ (UUCG-)--- -GGGC-GGG| GGCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CGACGGCAGG UCAGUAUGCC CCGAAACCCC GGGGCUGCAC 1561 GCGAGCUGCA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 GUAAACCCCG CCCCAGUAGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCCCCU UGCACACACC 1741 GCCCGUCGCA CCACCCGAGG GAGUUCU-CU GCGA-G-GCC CC-UCGC--U UGGG-(--GC 1801 AA-)-CCCAG -GU-GGG-GG GACGAGCAG- AGAACU-CCC GAGGGGGGUG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.2.1.2-DC 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.1.2 DCO.MOBILIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.1.2 DCO.MOBILIS_SUBGROUP. ORGANISM 1.2.1.2 DCO.MOBILIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Hth.butyli 1924 bp RNA RNA 02-JUL-1998 DEFINITION Hyperthermus butylicus. ACCESSION No information KEYWORDS No information. SOURCE Hyperthermus butylicus. ORGANISM Hyperthermus butylicus. REFERENCE 1 AUTHORS Burggraf,S., Huber,H. and Stetter,K.O. TITLE Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data JOURNAL Int. J. Syst. Bacteriol. 47 (3), 657-660 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X99553|g1707464 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 249 a 385 c 484 g 159 t 647 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ....CCG-AC 61 CGCUAUCNNG GUNGGACUAA NCCAUGGGA- --GUCGUNCN ---------- ---CCCCCG( 121 -GA----UG) CGGGGG---- -----|---C NCGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCGAUA--G 241 GCGA--GGGG GCC-(UGGAA CG-)-GGU-C CCUC-GCC-- GAA-AGGNNG CG--CGGAG- 301 (---CUU--- )-CCCCG|CG CGCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGNCC(UAC G)GGGCGCAC CAGGCGCG-A AACCUCCGCA AUGCGG(GCA A)CCGUGACG 541 GG|GUCACCC CGAGUG-CC- ---------- (----)---- ---------G CC-GAUAA-G 601 GC----GGC| UGUUCCCCGC U--------- ------(GUA AGAA--)--- ---------- 661 ----GGCGGG GG-AGUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGCG-U CGGGAUGCUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGGUAAG|-- UCCCCCCCU- AAAGCCCCGG GC(UC-A)AC CCGG---AG- -UGGGGGGGA 841 UACUACCG-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCGAUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCAAA CCGG(AUUAG AUAC)C-GGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUG....... ..C-(U-UG- GA)--GCCCG CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGNNNN -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUGACGA-C 1321 CUUGCC-CGA -CGCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUNN U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UACNNN 1441 GGGG------ (CCA--)--- -CCCC-GGG| GGCACA-CUA GGGGGACUGC CGCC(GUCCA 1501 A)GGCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAUCCCC CGGGCUGCAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 UUAAACCCCG CCGCAGUUGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGCGGAAUC 1681 CCUAGUANNN NNNCG(UUAG CAU)CGCGCG GUGA...... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Pyr.abyssi 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrodictium abyssi. ACCESSION No information KEYWORDS No information. SOURCE Pyrodictium abyssi. ORGANISM Pyrodictium abyssi. REFERENCE 1 AUTHORS Burggraf,S., Huber,H. and Stetter,K.O. TITLE Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data JOURNAL Int. J. Syst. Bacteriol. 47 (3), 657-660 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X99559|g1707650 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 245 a 388 c 473 g 164 t 654 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... ......GGA- --GUCGUGCN ---------- ---CCCCCG( 121 -GA----CG) CG........ .....|.... ....CGGACG GCUGAGUAAC ACGUGGCCAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCGAUA--G 241 GCGA--GGGG GCC-(UGGAA CG-)-GGU-C CCUC-GCC-- GAA-AGGGCG CG--CGGAN- 301 (---NUU--- )-CCCCG|CG NNNN-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGG. ..(....... .AAN)GGNCC 481 ANGNCC(UAC G)G....... .......... AACCUNNNNA AUNNNN(NCA A)CCNUNACG 541 GN|NUCACCC CGAGUG-CC- ---------- (----)---- ---------G CC-GAUAA-G 601 GC----GGC| UGUUCCCCGC U--------- ------(GUA GGAA--)--- ---------- 661 ----GGCNNN GG-AGUAAGC NNGGGGCA-A NUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGCGGU CGGGAUGAUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGGUAAG|-- UCCCCCCCU- AAAGCCCCGG GC(UC-A)AC CCGGG-GAG- -UGGGGGGGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCGAUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGANNNAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUNNNNN NGC-(U-UG- GA)--GCCCG CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGNNNN -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUGACGA-C 1321 CUUGCC-CGA -CGCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UACCCC 1441 GGGGG----- (CCA--)--- -CCCC-GGG| GGCACA-CUA GGGGGACUGC CGCC(GUCCA 1501 A)GGCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAUCCCC CGGGCUGCAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 UUAAACCCCG CCGUAGUUGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGCGGAAUC 1681 CCUAGUAANN NCGCG(UUAG CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GGGGGAG-GG GUGA-G-GCC CU-G...... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Pyr.occult 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pyrodictium occultum str. PL-19 DSM 2709. ACCESSION No information KEYWORDS No information. SOURCE Pyrodictium occultum str. PL-19 DSM 2709. ORGANISM Pyrodictium occultum. REFERENCE 1 AUTHORS Kaine,B.P., Schurke,C. and Stetter,K.O. TITLE Genes for the 16S and 5S ribosomal RNAs and the 7S RNA of Pyrodictium occultum JOURNAL Syst. Appl. Microbiol. 12, 8-14 (1988) STANDARD No information COMMENTS Organism information Culture collection: DSM 2709 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M21087 isolate_name= PL-19 BASE COUNT 280 a 463 c 565 g 186 t 430 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGGCCCG-AC 61 CGCUAUCGGG GUGGGACUAA GCCAUGGGA- --GUCGUGCG ---------- ---CCCCCG( 121 -GA----CG) CGGGGG---- -----|---C GCGGCGGACG GCUGAGUAAC ACGUGGCCAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CCCGAUA--G 241 GCGA--GGGG GCC-(UGGAA CG-)-GGU-C CCUC-GCC-- GAA-AGGGCG CG--CGGAG- 301 (---CCU--- )-CCCCG|CG CGCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGNCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACCUCCGCA AUGCGG(GCA A)CCGUGACG 541 GG|GUCACCC CGAGUG-CC- ---------- (----)---- ---------G CC-GAUAA-G 601 GC----GGC| UGUUCCCCGC U--------- ------(GUA GGAA--)--- ---------- 661 ----GGCGGG GG-AGUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGCGGU CGGGAUGAUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGGUAAG|-- UCCCCCCCU- AAAGCCCCGG GC(UC-A)AC CCGGG-GAG- -UGGGGGGGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCGAUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUGGGCG GGC-(U-UG- GA)--GCCCG CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGNA GCACCACAAG GGGUGGAGCC -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUGACGA-C 1321 CUUGCC-CGA -CACGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UACCCC 1441 GGGG------ (CCA--)--- -CCCC-GGG| GGCACA-CUA GGGGGACUGC CGNC(GUCCA 1501 A)GGCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAUCCCC CGGGCUGCAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 UUAAACCCCG CCGCAGUUGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGCGGAAUC 1681 CCUAGUAACC GCGCG(UUAG CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GGGGGAG-GG GUGA-G-GCC CC-GUCC--- -----(CUCG 1801 CCA)------ -GG-GCG-GG GUCGAACCU- CUCCCC-CGC GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS A.pern.OH2 1924 bp RNA RNA 11-NOV-1998 DEFINITION Aeropyrum pernix strain OH2.; 16S rRNA; 23S rRNA; 16S ribosomal RNA; 23S ribosomal RNA; internal transcribed spacer region. ACCESSION AB0195 2 KEYWORDS 16S rRNA; 23S rRNA; 16S ribosomal RNA; 23S ribosomal RNA; internal transcribed spacer region. SOURCE Aeropyrum pernix strain OH2. ORGANISM Aeropyrum pernix strain OH2. REFERENCE 1 (sites) AUTHORS Nomura,N., Sako,Y., Morinaga,Y., Kogishi,T. and Uchida,A. TITLE the hyperthermophilic archaeon Aeropyrum pernix, implying the presence of multiple hotspots for intron homing Intraspecific genetic polymorphism in the rRNA gene locus of JOURNAL Unpublished (1998) STANDARD No information REFERENCE 2 (bases 1 to 4883) AUTHORS Nomura,N. TITLE Direct Submission JOURNAL Submitted (05-NOV-1998) to the DDBJ/EMBL/GenBank databases. Norimichi Nomura, Kyoto University, Lab. of Marine Microbiology, Graduate School of Agriculture; Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan (E-mail:j54718@sakura.kudpc.kyoto-u.ac.jp, Tel: 81-75-753-6219, Fax:81-75-753-6226) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AB019552 BASE COUNT 273 a 443 c 537 g 191 t 480 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAGG-CUAA GCCAUGGGA- --GUCGAACG ---------- ---CCCCGC( 121 -CG----CU) GCGGGG---- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCCCUCG- G(-GAAA)CU GGGGCUAAUC CCCGAUA--G 241 GCGGG-GGGU GCC-(UGGAA G--)-GGU-C CUCC-GCC-- GAA-AGGGGC CG--CGGGG- 301 (-GGUUAUCG )--CCCG|CG GUCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCACG- 361 GUAGUUGGCG GG(GUAAUGG )CCCGCCAA| GCCUA-CGAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AAACUCCGCA AUGCGG(GCA A)CCGUGACG 541 GG|GCUACCC CGAGUG-CC- ---------- (----)---- ---------C CC-CUUGG-G 601 GG----GGC| UCUUCCCCGC C--------- ------(GUA AGUA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGCGGU CGGGGUGCUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCU 781 CGACAAG|-- UCCCCGCCU- AAAGCCCCGG GC(UC-A)AC CCGGG-GAG- -UGGCGGGGA 841 UACUGUCG-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCAUUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|A GUGUUGGGCG GGC-(G-UGC GA)--ACCCG CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAGCC -UGCCGCUUA AUUGG(AGUC 1201 AACG)CCGGG AAcuCUCCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUGAAGG-C 1321 CUUGCC-CGA -CGCGCUGAG |GGGAGAUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCG |CCCCUAG-U UGCCAUCCCC 1441 GGGG------ (CGA--)--- -CCCG-GGG| GGCACA-CUA UGGGGACUGC CGCC(G-CUA 1501 A-GGCGGAGG AAGGAGGGGG CAACGGCAGG UCAGCAUGCC CCUAAACCCC CGGGCUGCAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGU-G -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 UCAAACCCCG CCUCAGUUGG GAUCGANGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGCG(UCAU CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACU 1741 GCCCGUCGCU CCCCCCGAG- ---------- ---------- ---------- -----(---- 1801 ---)------ ---------- ---------- ---------- ---GGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UACG(GGAA) CCUGCGGCUG GAUCACCUC~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS A.pern.TB7 1924 bp RNA RNA 11-NOV-1998 DEFINITION Aeropyrum pernix. str. TB7; 16S rRNA; 16S ribosomal RNA; 23S ribosomal RNA; 23S rRNA; internal transcribed spacer region. ACCESSION AB0195 4 KEYWORDS 16S rRNA; 16S ribosomal RNA; 23S ribosomal RNA; 23S rRNA; internal transcribed spacer region. SOURCE Aeropyrum pernix. str. TB7. ORGANISM Aeropyrum pernix. REFERENCE 1 (sites) AUTHORS Nomura,N., Sako,Y., Morinaga,Y., Kogishi,T. and Uchida,A. TITLE Intraspecific genetic polymorphism in the rRNA gene locus of the hyperthermophilic archaeon Aeropyrum pernix, implying the presence of multiple hotspots for intron homing JOURNAL Unpublished (1998) STANDARD No information REFERENCE 2 (bases 1 to 5324) AUTHORS Nomura,N. TITLE Direct Submission JOURNAL Submitted (05-NOV-1998) to the DDBJ/EMBL/GenBank databases. Norimichi Nomura, Kyoto University, Lab. of Marine Microbiology, Graduate School of Agriculture; Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan (E-mail:j54718@sakura.kudpc.kyoto-u.ac.jp, Tel: 81-75-753-6219, Fax:81-75-753-6226) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AB019554 BASE COUNT 276 a 441 c 534 g 193 t 480 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAGG-CUAA CCCAUGGGA- --GUCGAACG ---------- ---CCCCGC( 121 -CG----CU) GCGGGG---- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCCCUCG- G(-GAAA)CU GGGGCUAAUC CCCGAUA--G 241 GCGGG-GGGU GCC-(UGGAA G--)-GGU-C CUCC-CCC-- GAA-AGGGGC CG--CGGGG- 301 (-GGUUAUCG )--CCCG|CG GUCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCACG- 361 GUAGUUGGCG GG(GUAAUGG )CCCGCCAA| GCCUA-CGAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AAACUCCGCA AUGCGG(GCA A)CCGUGACG 541 GG|GCUACCC CGAGUG-CC- ---------- (----)---- ---------C CC-CUUGG-G 601 GG----GGC| UUUUCCCCGC U--------- ------(GUA AGUA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGAA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGCGGU CGGGGUGCUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCU 781 CGACAAG|-- UCCCCGCCU- AAAGCCCCGG GC(UC-A)AC CCGGG-GAG- -UGGCGGGGA 841 UACUGUCG-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCAUUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|A GUGUUGGGCG GGC-(G-UGC GA)--ACCCG CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAGCC -UGCCGCUUA AUUGG(AGUC 1201 AACG)CCGGG AAcuCUCCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUGAAGG-C 1321 CUUGCC-CGA -CGCGCUGAG |GGGAGAUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCG |CCCCUAG-U UGCCAUCCCC 1441 GGGG------ (CGA--)--- -CCCG-GGG| GGCACA-CUA UGGGGACUGC CGCC(G-CUA 1501 A-GGCGGAGG AAGGAGGGGG CAACGGCAGG UCAGCAUGCC CCUAAACCCC CGGGCUGCAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGU-G -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 UCAAACCCCG CCUCAGUUGG GAUCGANGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGCG(UCAU CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACU 1741 GCCCGUCGCU CCCCCCGAG- ---------- ---------- ---------- -----(---- 1801 ---)------ ---------- ---------- ---------- ---GGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UACG(GGAA) CCUGCGGAUG AAUCACCUC~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS A.pern.TB1 1924 bp RNA RNA 11-NOV-1998 DEFINITION Aeropyrum pernix strain TB1; 16S rRNA; 16S ribosomal RNA; 23S ribosomal RNA; 23S rRNA; internal transcribed spacer region. ACCESSION AB0195 3 KEYWORDS 16S rRNA; 16S ribosomal RNA; 23S ribosomal RNA; 23S rRNA; internal transcribed spacer region. SOURCE Aeropyrum pernix strain TB1. ORGANISM Aeropyrum pernix strain TB1. REFERENCE 1 (sites) AUTHORS Nomura,N., Sako,Y., Morinaga,Y., Kogishi,T. and Uchida,A. TITLE Intraspecific genetic polymorphism in the rRNA gene locus of the hyperthermophilic archaeon Aeropyrum pernix, implying the presence of multiple hotspots for intron homing JOURNAL Unpublished (1998) STANDARD No information REFERENCE 2 (bases 1 to 5268) AUTHORS Nomura,N. TITLE Direct Submission JOURNAL Submitted (05-NOV-1998) to the DDBJ/EMBL/GenBank databases. Norimichi Nomura, Kyoto University, Lab. of Marine Microbiology, Graduate School of Agriculture; Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan (E-mail:j54718@sakura.kudpc.kyoto-u.ac.jp, Tel: 81-75-753-6219, Fax:81-75-753-6226) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AB019553 BASE COUNT 274 a 440 c 536 g 193 t 481 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAUG-CUAA GCCAUGGGA- --GUCGAACG ---------- ---CCCCGC( 121 -CG----CU) GCGGGG---- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCCCUCG- G(-GAAA)CU GGGGCUAAUC CCCGAUA--G 241 GCGGG-GGGU GCC-(UGGAA G--)-GGU-C CUCC-GCC-- GAA-AGGGGC CG--CGGGG- 301 (-GGUUAUCG )--CCCG|CG GUCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCACG- 361 GUAGUUGGCG GG(GUAAUGG )CCCGCCAA| GCCUA-CGAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AAACUCCGCA AUGCGG(GCA A)CCGUGACG 541 GG|GCUACCC CGAGUG-CC- ---------- (----)---- ---------C CC-CUUGG-G 601 GG----GGC| UUUUCCCCGC U--------- ------(GUA AGUA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGAA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGCGGU CGGGGUGCUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCU 781 CGACAAG|-- UCCCCGCCU- AAAGCCCCGG GC(UC-A)AC CCGGG-GAG- -UGGCGGGGA 841 UACUGUCG-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCAUUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|A GUGUUGGGCG GGC-(G-UGC GA)--ACCCG CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAGCC -UGCCGCUUA AUUGG(AGUC 1201 AACG)CCGGG AAcuCUCCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUGAAGG-C 1321 CUUGCC-CGA -CGCGCUGAG |GGGAGAUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGC)CA GGCAACGAGC GAGACCCCCG |CCCCUAG-U UGCCAUCCCC 1441 GGGG------ (CGA--)--- -CCCG-GGG| GGCACA-CUA UGGGGACUGC CGCC(G-CUA 1501 A-GGCGGAGG AAGGAGGGGG CAACGGCAGG UCAGCAUGCC CCUAAACCCC CGGGCUGCAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGU-G -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 UCAAACCCCG CCUCAGUUGG GAUCGANGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGCG(UCAU CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACU 1741 GCCCGUCGCU CCCCCCGAG- ---------- ---------- ---------- -----(---- 1801 ---)------ ---------- ---------- ---------- ---GGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UACG(GGAA) CCUGCGGCUG GAUCACCU~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS A.perni.K1 1924 bp RNA RNA 07-AUG-1998 DEFINITION Aeropyrum pernix strain K1.. ACCESSION No information KEYWORDS No information. SOURCE Aeropyrum pernix strain K1. ORGANISM Aeropyrum pernix strain K1. REFERENCE 1 (sites) AUTHORS Nomura,N., Sako,Y. and Uchida,A. TITLE hyperthermophilic archaeon Aeropyrum pernix K1 Molecular characterization and postsplicing fate of three introns within the single rRNA operon of the JOURNAL J. Bacteriol. 180 (14), 3635-3643 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AB008745 LOCUS AB008745 10717 bp DNA BCT 07-AUG-1998 DEFINITION Aeropyrum pernix genes for 16S rRNA, 23S rRNA and rRNA intron-encoded homing endonuclease, complete cds. ACCESSION AB008745 NID g3355905 KEYWORDS 16S rRNA; 16S ribosomal RNA; 23S rRNA; 23S ribosomal RNA; rRNA intron-encoded homing endonuclease. SOURCE Aeropyrum pernix (strain:K1) DNA. ORGANISM Aeropyrum pernix Archaea; Crenarchaeota; Aeropyrum. REFERENCE 1 (sites) AUTHORS Nomura,N., Sako,Y. and Uchida,A. TITLE Molecular characterization and postsplicing fate of three introns within the single rRNA operon of the hyperthermophilic archaeon Aeropyrum pernix K1 JOURNAL J. Bacteriol. 180 (14), 3635-3643 (1998) MEDLINE 98324973 REFERENCE 2 (bases 1 to 10717) AUTHORS Nomura,N. TITLE Direct Submission JOURNAL Submitted (06-NOV-1997) to the DDBJ/EMBL/GenBank databases. Norimichi Nomura, Kyoto University, Lab. of Marine Microbiology, Graduate School of Agriculture; Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto, Kyoto 606-01, Japan (E-mail:j54718@sakura.kudpc.kyoto-u.ac.jp, Tel:075-753-6219, Fax:075-753-6226) FEATURES Location/Qualifiers source 1..10717 /organism="Aeropyrum pernix" /strain="K1" /db_xref="taxon:56636" promoter 3260..3265 promoter 3290..3294 exon 3378..4253 rRNA join(3378..4253,4953..5520) /product="16S rRNA" intron 4254..4952 RBS 4262..4267 gene 4285..5004 /gene="apeI" CDS 4285..5004 /gene="apeI" /codon_start=1 /transl_table=11 /product="rRNA intron-encoded homing endonuclease" /db_xref="PID:d1032949" /db_xref="PID:g3355906" /translation="MNGCDIVLQTLDSLGLQMDGYALFYLVGALRDGSVYRYSRNYYV IWYSSNKDYLERVIVSKLRILGFHNVRVYQYKRGAYRVRISSKQLFHILVNQFEHPLS TSSRKTPWPTPQRVKDGPLALQIEYVKGFVDAEGSVIKSSKGVQVDVSQQIMEPLKFL AQVLEKVGVKVTGIYLGSDGVWRLRIASLASLRRFAHYIGFRHPCKSKKLNELLGRPL PGPSKLKGIGGGAPQGVEPAA" exon 4953..5520 misc_feature 5521..5877 /note="internal transcribed spacer (ITS) region" exon 5878..7117 rRNA join(5878..7117,7320..8174,8750..9735) /product="23S rRNA" intron 7118..7319 exon 7320..8174 intron 8175..8749 RBS 8239..8243 gene 8253..8666 /gene="apeII" CDS <8253..8666 /gene="apeII" /note="the first amino asid is supposed to be valine" /codon_start=1 /transl_table=11 /product="rRNA intron-encoded homing endonuclease" /db_xref="PID:d1032950" /db_xref="PID:g3355907" /translation="VDQCLLEGYVAGIIDAEASLSVSIKIQEDLRCRVRVDPVFSITQ DSKDVLNVVKNYFGCGRLMPKPGQEHLTLYVVDRLEALADCLIPKLDRLPLIVKKRGF EMFREIVLTLTRMKYRRVECCVIRDLVLNRTPYLA" exon 8750..9735 BASE COUNT 2071 a 2991 c 3662 g 1989 t 4 others BASE COUNT 273 a 440 c 537 g 193 t 481 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAGG-CUAA GCCAUGGGA- --GUCGAACG ---------- ---CCCCGC( 121 -CG----CU) GCGGGG---- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCCCUCG- G(-GAAA)CU GGGGCUAAUC CCCGAUA--G 241 GCGGG-GGGU GCC-(UGGAA G--)-GGU-C CUCC-GCC-- GAA-AGGGGC CG--CGGGG- 301 (-GGUUAUCG )--CCCG|CG GUCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCACG- 361 GUAGUUGGCG GG(GUAAUGG )CCCGCCAA| GCCUA-CGAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AAACUCCGCA AUGCGG(GCA A)CCGUGACG 541 GG|GCUACCC CGAGUG-CC- ---------- (----)---- ---------C CC-CUUGG-G 601 GG----GGC| UUUUCCCCGC U--------- ------(GUA AGUA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGCGGU CGGGGUGCUU ACUGGGC|CU AAAGCG-CCG UAGCCG|GCU 781 CGACAAG|-- UCCCCGCCU- AAAGCCCCGG GC(UC-A)AC CCGGG-GAG- -UGGCGGGGA 841 UACUGUCG-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCAUUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|A GUGUUGGGCG GGC-(G-UGC GA)--ACCCG CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAGCC -UGCCGCUUA AUUGG(AGUC 1201 AACG)CCGGG AAcuCUCCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUGAAGG-C 1321 CUUGCC-CGA -CGCGCUGAG |GGGAGAUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCG |CCCCUAG-U UGCCAUCCCC 1441 GGGG------ (CGA--)--- -CCCG-GGG| GGCACA-CUA UGGGGACUGC CGCC(G-CUA 1501 A-GGCGGAGG AAGGAGGGGG CAACGGCAGG UCAGCAUGCC CCUAAACCCC CGGGCUGCAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGU-G -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 UCAAACCCCG CCUCAGUUGG GAUCGANGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGCG(UCAU CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACU 1741 GCCCGUCGCU CCCCCCGAG- ---------- ---------- ---------- -----(---- 1801 ---)------ ---------- ---------- ---------- ---GGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UACG(GGAA) CCUGCGGCUG GAUCACCUC~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Ap.pernix1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Aeropyrum pernix str. K1. ACCESSION No information KEYWORDS No information. SOURCE Aeropyrum pernix str. K1. ORGANISM Aeropyrum pernix. REFERENCE 1 AUTHORS Sako,Y., Nomura,N., Uchida,A., Ishida,Y., Morii,H., Koga,Y., Hoaki,T. and Maruyama,T. TITLE hyperthermophilic archaeon growing at temperatures up to 100 degrees C Aeropyrum pernix gen. nov., sp. nov., a novel aerobic JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1070-1077 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D83259|g1813372 isolate_name= K1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 283 a 454 c 562 g 201 t 424 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAGGGCUAA CCCAUGGGA- --GUCGAACG ---------- ---CCCCUC( 121 -CG----CU) GCGGGG---- -----|---C GUGGCGGACG CCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCCCUCG- G(-GAAA)CU GGGGCUAAUC CCCGAUA--G 241 GCGGG-GGGU GCC-(UGGAA G--)-GGU-C CUCC-CCC-- GAA-AGGGGC CG--CGGGG- 301 (-GGUUAUCG )--CCCG|CG GUCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCACG- 361 GUAGUUGGCG GG(GUAAUGG )CCCGCCAA| GCCUA-CGAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AAACUCCGCA AUGCGG(GCA A)CCGUGACG 541 GG|GCUACCC CGAGUG-CC- ---------- (----)---- ---------C CC-CUUGG-G 601 GG----GGC| UUUUCCCCGC U--------- ------(GUA AGUA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGCGGU CGGGGUGCUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCU 781 CGACAAG|-- UCCCCGCCU- AAAGCCCCGG GC(UC-A)AC CCGGG-GAG- -UGGCGGGGA 841 UACUGUCG-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCAUUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUGGGCG GGC-(G-UGC GA)--GCCCG CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAGCC -UGCGGCUUA AUUGG(AGUC 1201 AACG)CCGGG AAC-CUCCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUGAAGG-C 1321 CUUGCC-CGA -CGCGCUGAG |GGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCG |CCCCUAG-U UGCCAUCCCC 1441 GGGG------ (CGA--)--- -CCCG-GGG| GGCACA-CUA GGGGGACUGC CGCC(G-UUA 1501 A)GGCGGAGG AAGGAGGGGG CAACGG-AGG UCAGCAUGCC CCUAAACCCC CGGGCUGAAC 1561 GCGGGUUACA AUGGCGGGGA CAGCGGGU-G -CCGACCCC( GAAA)GGGGG AGGAAAUCCC 1621 UCAAACCCCG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGCG(UCAU CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACU 1741 GCCCGUCGCU CCACCCGAGG GGGGAGG-GG GUGAUGCACU CU-CCCC--- -----(--CG 1801 ---)------ -GG-GGG-GG GUCGAACCU- CCUCCA-CCC CAAGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG AAUCACCUC~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Sth.marinu 1924 bp RNA RNA 02-JUL-1998 DEFINITION Staphylothermus marinus str. F1 DSM 3639. ACCESSION No information KEYWORDS No information. SOURCE Staphylothermus marinus str. F1 DSM 3639. ORGANISM Staphylothermus marinus. REFERENCE 1 AUTHORS Burggraf,S., Huber,H. and Stetter,K.O. TITLE Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data JOURNAL Int. J. Syst. Bacteriol. 47 (3), 657-660 (1997) STANDARD No information COMMENTS Organism information Culture collection: DSM 3639 Sequence information (bases 1 to 1924) Corresponding GenBank entry: X99560|g1707676 isolate_name= F1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 274 a 432 c 540 g 194 t 484 others ORIGIN 1 .......... .......... .......... ......(... )....|..CC GGACCCG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ---CUCCGC( 121 -CG----CU) GCGGAG---- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGAGGGGGAU AACAC--CG- G(-GAAA)CU GGUGCUAAUC CCCCAUA--G 241 GGGA--GGAU GCC-(UGGAA G--)-GGU-U CCUC-CCC-- GAA-AGGGUG CG--GUGG-- 301 (GGGUUAUCG )--CCGC|CG CGCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCC-(UAC G)GGGUGCAC CAGGCGCG-A AACCUCCGCA AUGCGG(GCA A)CCGUGACG 541 GG|GUCACCC CGAGUG-CC- ---------- (----)---- ---------C CC-UAUAU-G 601 GG----GGC| UUUUCCCCGC U--------- ------(GUA GGAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACGAUU AUUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 UGGCAAG|-- UCCCCUCCU- AAAUCCCCGG GC(UC-A)AC CCGGG-GAG- -UGGAGGGGA 841 AACUGCCA-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCUAUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUGGGCG GGC-(U-UA- GA)--GCCCG CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAGCC -UGCGGUUUA AUUGG(AGUC 1201 AACG)CCGGG AA--CCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUAACGG-C 1321 CUUGCC-CGA -CGCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCG |CCCCUAG-U UGC-GACCCG 1441 GAGC------ (UCUG-)--- -GCUC-CGG| GGCACA-CUA GGGGGACUGC CGCC(GUAUA 1501 A)GGCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAUCCCC CGGGCUACAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GUAA)GGGGG AGGCAAUCCC 1621 UCAAACCCCG CCGCAGUUGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGCG(UCAU CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGG GAGGGGGUGA GUGA-G-GCC CG-GUCC--C CCGGG(--NA 1801 AA-)CCC-GG -GG-GNCGGG GUCGAACUC- UCCCCU-CCC AAGGGGG... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.pJP74 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25302 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 88 a 133 c 166 g 54 t 1483 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGACCCG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGGGA- --GUCGCACG ---------- ---CUCCGC( 121 -CG----CU) GCGGGG---- -----|---C GUGGCGCACG GCUGAGUAGC ACGUGGCUAA 181 CCUGCCCUCG GGAGGGGGAU AACAC--CG- G(-GAAA)CU GGUGCUAAUC CCCCAUA--G 241 GGAA--GGCC GCC-(UGGAA G--)-GGU-- CCUU-CCCUC GAAAAGGGCC CG--GCAGGG 301 (---UUAG-- )CCCUGC|CG AGCC-GCCC- --GAGGAUGG |GGCUACGG| CCCAUCA-G- 361 GUAGUUGGCG GS(GUAACGG )CCCGCCAA| GCCGA-UAAC GGGUGGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAA G)GGGCGCAC CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGUGACG 541 GG|GCUACCC CGAGUG-CC- ---------- (----)---- --------GG GC-GAAG--A 601 GC--CCGGC| UUUUGCCCGG U--------- ------(CUA AAAC--)--- ---------- 661 ----GMMGGG AG-AAUAA.. .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Dco.mobil2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Desulfurococcus mobilis.. ACCESSION No information KEYWORDS No information. SOURCE Desulfurococcus mobilis. ORGANISM Desulfurococcus mobilis. REFERENCE 1 AUTHORS Kjems,J., Garrett,R.A. and Ansorge,W. TITLE The sequence of the 16S RNA gene and its flanking region from the archaebacterium Desulfurococcus mobilis JOURNAL Syst. Appl. Microbiol. 9, 22-28 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M36474 BASE COUNT 293 a 440 c 551 g 211 t 429 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGUCCCG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGGGA- --GUCGCACG ---------- ---CUCCGC( 121 -CG----CU) GCGGGG---- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGAGGGGGAU AACAC--CG- G(-GAAA)CU GGUGCUAAUC CCCCAUA--G 241 GGGA--GGAG GCC-(UGGAA G--)-GGU-U CCUC-CCC-- GAA-AGGGUG UG--GCAG-- 301 (GGGUUAACG )--CUGC|UA CACC-GCCC- --GAGGAUGG |GGCUACGG| CCCAUUA-G- 361 GUUGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-UAAU GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGUGACG 541 GG|GCCACCC CGAGUG-CC- ---------- (----)---- ---------C CC-UUAC--G 601 GG----GGC| UUUUCCCCGC U--------- ------(GUA GGAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACGAUU AUUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGGCAAG|-- UCCCCUCCU- AAAUUCCCGG GC(UC-A)AC CCGGG-GAC- -UGGAGGGGA 841 UACUGCCG-G GCUA-GGGGG UGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCUAUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACACGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUGGGUG GGC-(U-UA- GA)--GCCCA CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 CAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAGCC -UGCGGUUCA AUUGG(AGUC 1201 AACG)CCGGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGGA UGACGGCCAG GUUAAAGG-C 1321 CUUGCC-UGA -CGCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GCU(GUGA 1381 )AGUGUCCGG (UUAAGU)CC GGAAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UACCCG 1441 GGGC------ (UACG-)--- -GCUC-CGG| GGCACA-CUA GGGGGACUGC CGCC(GUUUA 1501 A)GGCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAACCCCC CGGGCUACAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 UCAAACCCCG CCGUGGUUGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGCG(UCAA CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGG GGAGGGG-GA GUGA-G-GCC CG-GCCC--- -----(--CU 1801 U--)------ -GG-GUC-GG GUCGAACUC- CCCCUC-CCU GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UACC(GGAA) GGUGCGGCUG GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Dco.mobili 1924 bp RNA RNA 02-JUL-1998 DEFINITION Desulfurococcus mobilis. ACCESSION No information KEYWORDS No information. SOURCE Desulfurococcus mobilis. ORGANISM Desulfurococcus mobilis. REFERENCE 1 AUTHORS Kjems,J. and Garrett,R.A. TITLE Novel expression of the ribosomal RNA genes in the extreme thermophile and archaebacterium Desulfurococcus mobilis JOURNAL EMBO J. 6, 3521-3530 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X06188 NB: This sequence does not contain X06188 or X06189 Rel. 81 versions This sequence differs from Dco.mobil2 by only 1 bp- at the end BASE COUNT 293 a 440 c 551 g 212 t 428 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGUCCCG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGGGA- --GUCGCACG ---------- ---CUCCGC( 121 -CG----CU) GCGGGG---- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGAGGGGGAU AACAC--CG- G(-GAAA)CU GGUGCUAAUC CCCCAUA--G 241 GGGA--GGAG GCC-(UGGAA G--)-GGU-U CCUC-CCC-- GAA-AGGGUG UG--GCAG-- 301 (GGGUUAACG )--CUGC|UA CACC-GCCC- --GAGGAUGG |GGCUACGG| CCCAUUA-G- 361 GUUGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-UAAU GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACCUCCGCA AUGCGG(GAA A)CCGUGACG 541 GG|GCCACCC CGAGUG-CC- ---------- (----)---- ---------C CC-UUAC--G 601 GG----GGC| UUUUCCCCGC U--------- ------(GUA GGAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACGAUU AUUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGGCAAG|-- UCCCCUCCU- AAAUUCCCGG GC(UC-A)AC CCGGG-GAC- -UGGAGGGGA 841 UACUGCCG-G GCUA-GGGGG UGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCUAUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACACGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGGAGCGAA CCGG(AUUAG AUAC)CCGGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUGGGUG GGC-(U-UA- GA)--GCCCA CCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 CAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAGCC -UGCGGUUCA AUUGG(AGUC 1201 AACG)CCGGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGGA UGACGGCCAG GUUAAAGG-C 1321 CUUGCC-UGA -CGCGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GCU(GUGA 1381 )AGUGUCCGG (UUAAGU)CC GGAAACGAGC GAGACCCCCA |CCCCUAG-U UGC-UACCCG 1441 GGGC------ (UACG-)--- -GCUC-CGG| GGCACA-CUA GGGGGACUGC CGCC(GUUUA 1501 A)GGCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAACCCCC CGGGCUACAC 1561 GCGGGCUACA AUGGCGGGGA CAGCGGGA-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 UCAAACCCCG CCGUGGUUGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGCG(UCAA CAU)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGG GGAGGGG-GA GUGA-G-GCC CG-GCCC--- -----(--CU 1801 U--)------ -GG-GUC-GG GUCGAACUC- CCCCUC-CCU GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UACC(GGAA) GGUGCGGCUG GAUCACCUCC U~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.pJP7 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25307 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 86 a 127 c 166 g 62 t 1483 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGACCCG-AC 61 UGCNANCGGG GUGGCACUAA GCCAUGGGA- --GUCGCACA ---------- ---UCCCAC( 121 -CG----CU) GUGGGG---- -----|---U GUGGCGAACG GCUGGGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAC AACUC--CG- G(-GAAA)CU GGAGCUGAUC CCCGAUA--G 241 GUGG--GGAG UCC-(UGGAA C--)-GGU-U CUCC-GCC-- AAA-AAGGAC UA--GGAGGG 301 (---UUAA-- )CGCUUC|UA GUCC-GCCC- --GAGGAUGG |GGCUGCGC| CCCAUCA-G- 361 GUAGUUGGCG GG(GUAAUGG )CCCGCCAA| GCCGA-UAAC GGGUGGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAA G)GGGNGCAC CAGGCGCG-A AACCUCCGCA AUGCGG(GNA A)CCGUGACG 541 GG|GCCACCC CGAGUG-CC- ---------- (----)---- ---------C CC-UUUCC-G 601 GG----GGC| UUUUCCCCGC U--------- ------(GUA GGAA--)--- ---------- 661 ----GGCGGG GG-NAUANGC GGGGNG.... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.2.1.3-SU 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.1.3 SUL.SOLFATARICUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.1.3 SUL.SOLFATARICUS_SUBGROUP. ORGANISM 1.2.1.3 SUL.SOLFATARICUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Sul.solfa2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus solfataricus str. 98/2. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus solfataricus str. 98/2. ORGANISM Sulfolobus solfataricus. REFERENCE 1 AUTHORS Haseltine,C.A., Rolfsmeier,M.L. and Blum,P. TITLE Speciation of the genus Sulfolobus by rDNA sequencing and PCR analysis JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L36990|g559251 (bases 1 to 487) isolate_name= 98/2 BASE COUNT 102 a 148 c 166 g 71 t 1437 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......AAC ACGUGGCUAA 181 CCUACCCUGA GGAGGGAGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC UCCCAUA--G 241 GCGA--GGAG UCC-(UGGAA C--)-GGU-U CCUC-GCU-G AAC-AGGCUC AU--GGGC-- 301 (UAUUCCCC- )--GCUC|AU GAGC-GCCU- --CAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGGG GG(GUAAGGG )CCCCCCAA| GCCUA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGAG CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GGA A)GCGUGAGG 541 GC|GCCACCC CGAGUG-CU- ---------- (----)---- ---------C CC-GUAA--G 601 GG----AGC| UUUUCCCCGC U--------- ------(CUA CAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACUCUU AUCGGGC|CU AAAGCGCCCG UAGCC-|--- 781 CGACAAG|-- UCACUCCUU- AAAGACCCCG GC(UC-A)AC CGGGG..... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sul.solfa3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus solfataricus str. P2 DSM 1617. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus solfataricus str. P2 DSM 1617. ORGANISM Sulfolobus solfataricus. REFERENCE 1 AUTHORS Haseltine,C.A., Rolfsmeier,M.L. and Blum,P. TITLE Speciation of the genus Sulfolobus by rDNA sequencing and PCR analysis JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 1617 Sequence information (bases 1 to 1924) Corresponding GenBank entry: L36991|g559252 (bases 1 to 487) DSM 1617 = ATCC 35092 isolate_name= P2 BASE COUNT 102 a 148 c 166 g 71 t 1437 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......AAC ACGUGGCUAA 181 CCUACCCUGA GGAGGGAGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC UCCCAUA--G 241 GCGA--GGAG UCC-(UGGAA C--)-GGU-U CCUC-GCU-G AAC-AGGCUC AU--GGGC-- 301 (UAUUCCCC- )--GCUC|AU GAGC-GCCU- --CAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGGG GG(GUAAGGG )CCCCCCAA| GCCUA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGAG CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GGA A)GCGUGAGG 541 GC|GCCACCC CGAGUG-CU- ---------- (----)---- ---------C CC-GUAA--G 601 GG----AGC| UUUUCCCCGC U--------- ------(CUA CAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACUCUU ACUGGGC|CU AAAGCGCCCG UAGCC-|--- 781 CGACAAG|-- UCACUCCUU- AAAGACCCCG GC(UC-A)AC CGGGG..... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sul.solfa4 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus solfataricus str. P1 IFO 15331. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus solfataricus str. P1 IFO 15331. ORGANISM Sulfolobus solfataricus. REFERENCE 1 AUTHORS Kurosawa,N., Ohkura,K., Horiuchi,T. and Itoh,Y.H. TITLE Characterization of the 16s ribosomal RNA genes and phylogenetic relationships of sulfur-dependent thermoacidophilic archaebacteria JOURNAL J. Gen. Appl. Microbiol. 41, 75-81 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D26490|g1054618 (bases 728 to 2221) IFO 15331 = DSM 1616 = ATCC 35091 (T) isolate_name= P1 BASE COUNT 330 a 433 c 532 g 244 t 385 others ORIGIN 1 .AAGGGUGUG GUUAGCUUCC UACCCCCAAA UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCCC( 121 -GGG--CAA) GGGAG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUGA GGAGGGAGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC UCCCAUA--G 241 GCGA--GGAG UCC-(UGGAA C--)-GGU-U CCUC-GCU-- GAA-AGGCUC AU--GGGC-- 301 (UAUUCCCC- )--GCUC|AU GAGC-GCCU- --CAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGGG GG(GUAAGGG )CCCCCCAA| GCCUA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCC-(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GGA A)GCGUGAGG 541 GC|GCCACCC CGAGUG-CU- ---------- (----)---- ---------C CC-GUAA--G 601 GG----AGC| UUUUCCCCGC U--------- ------(CUA CAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACUCUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGACAAG|-- UCACUCCUU- AAAGACCCCG GC(UC-A)AC CGGGG-GAA- -UGGGGGUGA 841 UACUGUCG-G GCUA-GGGGG CGGGAGAGGC CAGC|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUCAGAU CUCGGGAGGA CCACCAGUGG C(GAAA)GCG G-CUGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGCAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACAAU GCAGGCUA|G GUGUCACAUG GGC-(U-UA- GA)--GCCCA UGUGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CUGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC UAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCA |CCACUAG-U UGG-UAUCCU 1441 GGUC------ (UCCG-)--- -GGCC-GGG| ACCACA-CUA GUGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AGGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC UGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U UCCGACCCC( GAAA)GGGGA AGGUAAUCCC 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCAGA(UCAA CAA)UCUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU AGGAGAG-GG GUGA-G-GCC CC-UUGC--C -----(--UU 1801 UG-)-----G -GU-GGG-GG GUCGAGCUU- CUCUCC-UGC AAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCA UAGU|UACAA ACUCCCCC~~ 1921 ~~~| // LOCUS Sul.solfa6 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus solfataricus str. P1 DSM 1616. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus solfataricus str. P1 DSM 1616. ORGANISM Sulfolobus solfataricus. REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as Acidianus ambivalems combs. nov. JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 1616 Sequence information (bases 1 to 1924) Corresponding GenBank entry: X90478 DSM 1616 = IFO 15331 = ATCC 35091 (T) isolate_name= P1 BASE COUNT 303 a 404 c 506 g 223 t 488 others ORIGIN 1 .......... .......... .......... ......(... )UCCU|-GCC GGUCCCG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCCC( 121 -GGG--CAA) GGGAG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUGA GGAGGGAGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC UCCCAUA--G 241 GCGA--GGAG UCC-(UGGAA C--)-GGU-U CCUC-GCU-- GAA-AGGCUC AU--GGGC-- 301 (UAUUCCCC- )--GCUC|AU GAGC-GCCU- --CAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGGG GG(GUAAGGG )CCCCCCAA| GCCUA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCC-(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GGA A)GCGUGAGG 541 GC|GCCACCC CGAGUG-CU- ---------- (----)---- ---------C CC-GUAA--G 601 GG----AGC| UUUUCCCCGC U--------- ------(CUA CAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACUCUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGACAAG|-- UCACUCCUU- AAAGACCCCG GC(UC-A)AC CGGGG-GAA- -UGGGGGUGA 841 UACUGUCG-G GCUA-GGGGG CGGGAGAGGC CAGC|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUCAGAU CUCGGGAGGA CCACCAGUGG C(GAAA)GCG G-CUGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGCAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACAAU GCAGGCUA|G GUGUCACAUG GGC-(U-UA- GA)--GCCCA UGUGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CUGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC UAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCA |CCACUAG-U UGG-UAUCCU 1441 GGUC------ (UCCG-)--- -GGCC-GGG| ACCACA-CUA GUGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AGGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC UGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U UCCGACCCC( GAAA)GGGGA AGGUAAUCCC 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCAGA(UCAA CAA)UCUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU AGGAGAG-GG GUGA-G-GCC CC-UUGC--C -----(--UU 1801 UG-)-----G -GU-GGG-GG GUCGAGCUU- CUCUCC-UGC AAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sul.shibat 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus shibatae str. B12 DSM 5389. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus shibatae str. B12 DSM 5389. ORGANISM Sulfolobus shibatae. REFERENCE 1 AUTHORS Grogan,D.W., Palm,P. and Zillig,W. TITLE Sulfolobus, Sulfolobus shibatae, sp. nov. Isolate B12, which harbours a virus-like element, represents a new species of the archaebacterial genus JOURNAL Arch. Microbiol. 154, 594-599 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 5389 Sequence information (bases 1 to 1924) Corresponding GenBank entry: M32504 isolate_name= B12 BASE COUNT 320 a 414 c 523 g 237 t 430 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCCC( 121 -GGG--CAA) GGGAG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUGA GGAGGGAGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC UCCCAUA--G 241 GCGA--GGAG UCC-(UGGAA C--)-GGU-U CCUC-GCU-- GAA-AGGUUC AU--GGGC-- 301 (UAUUUCCC- )--GCUC|AU GAGC-GCCU- --CAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGGG GG(GUAAGGG )CCCCCCAA| GCCUA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCC-(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GGA A)GCGUGAGG 541 GC|GCCACCC CGAGUG-CU- ---------- (----)---- ---------C CC-GUAA--G 601 GG----AGC| UUUUCCCCGC U--------- ------(CUA CAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACUCUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGACAAG|-- UCACUCCUU- AAAGACCUCG GC(UC-A)AC CGGGG-GAA- -UGGGGGUGA 841 UACUGUCG-G GCUA-GGGGG CGGGAGAGGC CAGC|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUCAGAU CUCGGGAGGA CCACCAGUGG C(GAAA)GCG G-CUGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGCAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCACAUG GGC-(U-UA- GA)--GCCCA UGUGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CUGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC UAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCA |CCAUUAG-U UGG-UAUCCU 1441 GGUC------ (UCCG-)--- -GGCC-GGG| ACCACA-CUA GUGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC UGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U UCCGACCCC( GAAA)GGGGA AGGUAAUCCC 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCAGA(UCAA CAA)UCUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU AGGAGAG-GG GUGA-G-GCC CC-UUGC--C -----(--UU 1801 UA-)-----G -GU-GGG-GG GUCGAGCUU- CUCUCC-UGC AAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUC~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Sul.spB12 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus sp. str. B12. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus sp. str. B12. ORGANISM Sulfolobus sp. REFERENCE 1 AUTHORS Reiter,W.D., Palm,P., Voos,W., Kaniecki,J., Grampp,B., Schulz ,W. and Zillig,W. TITLE Putative promoter elements for the ribosomal RNA genes of the thermoacidophilic archaebacterium Sulfolobus sp. strain B12 JOURNAL Nucleic Acids Res. 15, 5581-5595 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X05869|g47613 (bases 1583 to 1857) isolate_name= B12 BASE COUNT 55 a 73 c 98 g 49 t 1649 others ORIGIN 1 .......... .......... .......AAA UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCCC( 121 -GGG--CAA) GGGAG----- -----|---C -UGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUGA GGAGGGAGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC UCCCAUA--G 241 GCGA--GGAG UCC-(UGGAA C--)-GGU-U CCUC-GCU-- GAA-AGGUUC AU--GGGC-- 301 (UAUUUCCC- )--GCUC|AU GAGC-GCCU- --CAGGAUGG |GGCUGCGG| CC-AUCA-G- 361 GUAGUUGGGG GG(GUAAGGG )CCCCC...| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sul.solfa5 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus solfataricus str. Ron 12/III. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus solfataricus str. Ron 12/III. ORGANISM Sulfolobus solfataricus. REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as Acidianus ambivalems combs. nov. JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X90483 isolate_name= Ron 12/III BASE COUNT 305 a 392 c 497 g 225 t 505 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .........C 61 CGCUAUCGGG GUGGGGUUAA GCCAUGGGA- --GUUGUACG ---------- ----CUCCC( 121 -GGG--CAA) GGGAG----- -----|---C GUGGCAGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUGA GGAGGGAGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC UCCCAUA--G 241 GCGA--GGAG UCC-(UGGAA C--)-GGU-U CCUC-GCU-- GAA-AGGCUC AU--AGGC-- 301 (UAUUUCCC- )--GUCU|AU GAGC-GCCU- --CAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGGG GG(GUAAGGG )CCCCCCAA| GCCUA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCC-(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GAA A)GCGUGAGG 541 GC|GCCACCC CGAGUG-CU- ---------- (----)---- ---------C CC-GUAA--G 601 GG----AGC| UUUUCCCCGC U--------- ------(CUA CAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACUCUU ACUGGGC|CU AAAGCGCCCG UAGCCG|GCC 781 CGGCAAG|-- UCACCCCUU- AAAGACCUCG GC(UC-A)AC CGGGG-GAA- -UGGGGGUGA 841 UACUGUCG-G GCUA-GGGGG CGAGAGAGGC CAGC|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUCAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG G-CUGGCUAG AGCGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGCAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCACAUG GGC-(U-UA- GA)--GCCCA UGUGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CUGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC UAGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCA |CCACUAG-U UGG-UAUCUU 1441 GGCC------ (UCCG-)--- -GGCC-GGG| ACCACA-CUA GUGGGACUGC UGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUCC UAGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U UCCGACCCC( GAAA)GGGGA AGGUAAUCCC 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCAGA(UCAA CAA)UCUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU AGGAGAG-GG GUGA-G-GCC CC-UUGC--C -----(--UU 1801 UA-)-----G -GU-GGG-GG GUCGAGCUU- CUCUCC-UGC AAGGGGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sul.spLM 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus sp. str. LM. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus sp. str. LM. ORGANISM Sulfolobus sp. REFERENCE 1 AUTHORS Norris,P.R., Waterhouse,S. and Burton,N.P. TITLE Phylogeny of Thermoacidophilic Iron-oxidising Archaea JOURNAL FEMS Microbiol. Lett. in press (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U40813|g1117999 isolate_name= LM BASE COUNT 328 a 367 c 472 g 232 t 525 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ...CCCG-AU 61 CGCUAUCGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACA ---------- -----UCCC( 121 -GC----AA) GGGG------ -----|---U GUGGCGGACU GCUGAGUAAC ACGUGGUCAA 181 CCUAACCUAG GGAAGGGAAU AACCC--CG- G(-GAAA)CU GGGGAUAAUU CCCUAUA--G 241 CUGA--GGAG UCC-(UGGAA C--)-GGU-U UCUC-GGC-- GAA-A-GCCC ---------- 301 (--GCAA--- )------|-- GGGC-GCCC- --UAGGAUGG |GACUGCGG| CCCAUCA-G- 361 GUAGUUGGGG GG(UUAAAGG )CCCUCCAA| GCCGA-UAAC GGGUAGGGG| CCCU(GGGA) 421 GGGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAU)GGCCC 481 AGGUCC(UAC G)GGGCGCAC CAGGCGCG-C AACGUCUUCA AUGCAC(GAA A)GUGUGAAA 541 GC|GCUACCC CGAGUG-CC- ---------- (----)---- ---------- CC--UUU--G 601 G-----GGC| UUUUCUACGC U--------- ------(CUA AAAA--)--- ---------- 661 ----GGCGUG GG-AAUAAGC GGAGGGCA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGAU CGGGACUCUU AUUGGGC|CU AAAGCGCCCG UANCCG|GCA 781 CAGUAAG|-- UCACUGCUU- AAAGACCCGA GC(UC-A)AC UCGGG-GAA- -GGGUAGAGA 841 UACUACAG-A GCUA-GGGGG CGGGAGAGGU CGGG|GGUAC UCCUAGAGUA GGG(GCGAAA 901 )UCCGUAGAU CCUAGGAGGA CCACCAGAGG C(GGAG)GCG C-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCUG GGGUAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCAGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCACGUG AGC-(U-UA- GA)--GCCCA CGUGG-UGCC 1081 GCAGG(GAAG )CCUUUAAGC CCGC|C|GCC UGGGGAAUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGAA UGACGGCCAG GCUGAUGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCUCUA |CUCCUAG-U UGG-UAUCUG 1441 GGCC------ (UCCG-)--- -GGCU-UGG| ACCACA-CUA GGAGGACUGC CAGU(GU-UA 1501 A)ACUGGAGG AAGGUAGAGG CCACGGCAGG UCAGCAUGCC CCGAAACUCC CNGGCCGCAC 1561 GCGGGUUACA AUGGUAGGGA CAGCGGGA-U -CCAAGUCC( GAAA)GGAGG AGGCAAUCCC 1621 UUAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUA) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GUAAGAG-GC GUGA-G-GAU CC-CUGC--- -----(--GA 1801 AA-)------ -GU-GGG-GA UUCGAACUC- CUCUUA-CGU GAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sul.metall 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus metallicus. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus metallicus. ORGANISM Sulfolobus metallicus. REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as Acidianus ambivalems combs. nov. JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X90479 BASE COUNT 323 a 365 c 471 g 236 t 529 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .........U 61 CGCUAUCGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACA U--------- ------CCC( 121 -GC----AA) GGG------- -----|---U GUGGCGGACU GCUGAGUAAC ACGUGGUCAA 181 CCUAACCUAG GGAAGGGAAU AACCC--CG- G(-GAAA)CU GGGGAUAAUU CCCUAUA--G 241 CUGA--GGAG UCC-(UGGAA C--)-GGU-U CCUC-GGC-- GAA-A-GCCC ---------- 301 (--GCAA--- )------|-- GGGC-GCCC- --UAGGAUGG |GACUGCGG| CCCAUCA-G- 361 GUAGUUGGGG GG(UUAAAGG )CCCUCCAA| GCCGA-UAAC GGGUAGGGG| CCCU(GGGA) 421 GGGG------ ---------- ----GAGCCC C|CAGAUGGG CA(CUGAGA- CAAU)GGCCC 481 AGGUCC(UAC G)GGGCGCAC CAGGCGC-GC AACGUCUUCA AUGCAC(GAA A)GUGUGAAA 541 GC|GCUACCC CGAGUG-CC- ---------- (----)---- ---------- CC--UUU--G 601 G-----GGC| UUUUCUACGC U--------- ------(CUA AAAA--)--- ---------- 661 ----GGCGUG GG-AAUAAGC GGAGGGCA-A GACUG-GUG( UC--AGCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGAU CGGGACUCUU AUUUGGC|CU AAAGCGCCCG UAGCCG|GCU 781 CUGUAAG|-- UCACUGCUU- AAAGACCCGA GC(UC-A)AC UCGGG-GAA- -GGGUAGUGA 841 UACUACAG-A GCUA-GGGGG CGGGAGAGGU CGGG|GGUAC UCCUAGAGUA GGG(GCGAAA 901 )UCCGUAGAU CCUAGGAGGA CCACCAGUGG C(GGAG)GCG C-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCUG GGGUAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCAGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCACGUG AGC-(U-UA- GA)--GCCCA CGUGG-UGCC 1081 GCAGG(GAAG )CCUUUAAGC CCGC|C|GCC UGGGGAAUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGAA UGACGGCCAG GCUGAUGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCUCUA |CUCCUAG-U UGG-UAUCUG 1441 GGCC------ (UCCG-)--- -GGCU-UGG| ACCACA-CUA GGAGGACUGC CAGU(GU-UA 1501 A)ACUGGAGG AAGGUAGAGG CCACGGCAGG UCAGCAUGCC CCGAAACUCC CGGGCCGCAC 1561 GCGGGUUACA AUGGUAGGGA CAGCGGGA-U -CCAAGUCC( GAAA)GGAGG AGGCAAUCCC 1621 UUAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUA) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GUAAGAG-GC GUGA-G-GAU CC-CUGC--- -----(--GA 1801 AA-)------ -GU-GGG-GA UUCGAACUC- CUCUUA-CGU GAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.2.1.4-SU 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.1.4 SUL.ACIDOCALDARIUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.1.4 SUL.ACIDOCALDARIUS_SUBGROUP. ORGANISM 1.2.1.4 SUL.ACIDOCALDARIUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Sul.solfat 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus solfataricus str. P1 DSM 1616. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus solfataricus str. P1 DSM 1616. ORGANISM Sulfolobus solfataricus. REFERENCE 1 AUTHORS Olsen,G.J., Pace,N.R., Nuell,M., Kaine,B.P., Gupta,R. and Woese,C.R. TITLE Sequence of the 16S rRNA gene from thermoacidophilic archaebacterium Sulfolobus solfataricus and its evolutionary implications JOURNAL J. Mol. Evol. 22, 301-307 (1985) STANDARD No information COMMENTS Organism information Culture collection: DSM 1616 Sequence information (bases 1 to 1924) Corresponding GenBank entry: X03235 DSM 1616 = IFO 15331 = ATCC 35091 (T) isolate_name= P1 BASE COUNT 322 a 419 c 519 g 232 t 432 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAGGGAUAA GCCAUGGGA- --GUCUUACA ---------- ----CUCCC( 121 -GGG--UAA) GGGAG----- -----|---U GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC CCCGAUA--G 241 GGAA--GGAG UCC-(UGGAA U--)-GGU-U CCUU-CCC-- UAA-AGGGCU AU--AGGC-- 301 (UAUUUCCC- )--GUUU|GU AGCC-GCCC- --GAGGAUGG |GGCUACGG| CCCAUCA-G- 361 GCUGUCGGUG GG(GUAAAGG )CCCACCGA| ACCUA-UAAC GGGUAGGGG| CCGU(GGAA) 421 GCGG------ ---------- ----GAGCCU C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GAA A)GCGUGAGG 541 GC|GCUACCC CGAGUG-CC- ---------- (----)---- ---------U CC-GCAA--G 601 GA----GGC| UUUUCCCCGC U--------- ------(CUA AAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGUGAUU ACUGGGC|CU AAAGCGCCUG UAGCCG|GCC 781 CACCAAG|-- UCGCCCCUU- AAAGUCCCCG GC(UC-A)AC CGGGG-AAC- -UGGGGGCGA 841 UACUGGUG-G GCUA-GGGGG CGGGAGAGGC GGGG|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUUAGAU ACCGGGAGGA CCACCAGUGG C(GGAA)GCG C-CCCGCUAG AACGCGCCCG 961 ACGGUGAGAG GCGAAAGCCG GGGCAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCGAGUA GGC-(U-UA- GA)--GCCUA CUCGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGUA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGG-UAUUCU 1441 GGAC------ (UCCG-)--- -GUCC-AGA| ACCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAACGGGA-U -GCUACCUC( GAAA)GGGGG AGCCAAUC-C 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACCC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GCGAAAG-GG GUGA-G-GUC CC-UUGC--- -----(-GAU 1801 AA-)------ -GU-GGG-GG AUCGAACUC- CUUUCC-CGC GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUC~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Sul.acald2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus acidocaldarius.. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus acidocaldarius. ORGANISM Sulfolobus acidocaldarius. REFERENCE 1 AUTHORS Durovic,P. and Dennis,P.P. TITLE Separate pathways for excision and processing of 16S and 23S rRNA from the primary rRNA operon transcript from the hyperthermophilic archaebacterium Sulfolobus acidocaldarius: similarities to eukaryotic rRNA processing JOURNAL Mol. Microbiol. 13, 229-242 STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U05018|g460149 (bases 850 to 2341) BASE COUNT 321 a 419 c 519 g 232 t 433 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAGGGAUAA GCCAUGGGA- --GUCUUACA ---------- ----CUCCC( 121 -GGG--UAA) GGGAG----- -----|---U GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC CCCGAUA--G 241 GGAA--GGAG UCC-(UGGAA U--)-GGU-U CCUU-CCC-- UAA-AGGGCU AU--AGGC-- 301 (UAUUUCCC- )--GUUU|GU AGCC-GCCC- --GAGGAUGG |GGCUACGG| CCCAUCA-G- 361 GCUGUCGGUG GG(GUAAAGG )CCCACCGA| ACCUA-UAAC GGGUAGGGG| CCGU(GGAA) 421 GCGG------ ---------- ----GAGCCU C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GAA A)GCGUGAGG 541 GC|GCUACCC CGAGUG-CC- ---------- (----)---- ---------U CC-GCAA--G 601 GA----GGC| UUUUCCCCGC U--------- ------(CUA AAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGUGAUU ACUGGGC|CU AAAGCGCCUG UAGCCG|GCC 781 CACCAAG|-- UCGCCCCUU- AAAGUCCCCG GC(UC-A)AC CGGGG-AAC- -UGGGGGCGA 841 UACUGGUG-G GCUA-GGGGG CGGGAGAGGC GGGG|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUUAGAU ACCGGGAGGA CCACCAGUGG C(GGAA)GCG C-CCCGCUAG AACGCGCCCG 961 ACGGUGAGAG GCGAAAGCCG GGGCAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCGAGUA GGC-(U-UA- GA)--GCCUA CUCGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGUA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGG-UAUUCU 1441 GGAC------ (UCCG-)--- -GUCC-AGA| ACCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAACGGGA-U -GCUACCUC( GAAA)GGGGG AGCCAAUC-C 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACCC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GCGAAAG-GG GUGA-G-GUC CC-UUGC--- -----(-GAU 1801 AA-)------ -GU-GGG-GG AUCGAACUC- CUUUCC-CGC GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUC~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Sul.acalda 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus acidocaldarius str. 98-3 ATCC 33909 (T). ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus acidocaldarius str. 98-3 ATCC 33909 (T). ORGANISM Sulfolobus acidocaldarius. REFERENCE 1 AUTHORS Kurosawa,N. and Itoh,Y.H. TITLE Nucleotide sequence of the 16S rRNA gene from thermoacidophilic archaea Sulfolobus acidocaldarius ATCC33909 JOURNAL Nucleic Acids Res. 21, 357-357 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33909 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14876 ATCC 33909 (T) = ATCC 27360 = DSM 639 isolate_name= 98-3 BASE COUNT 323 a 418 c 519 g 232 t 432 others ORIGIN 1 .......... .......... ........AU UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAGGGAUAA GCCAUGGGA- --GUCUUACA ---------- ----CUCCC( 121 -GGG--UAA) GGGAG----- -----|---U GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC CCCGAUA--G 241 GGAA--GGAG UCC-(UGGAA U--)-GGU-U CCUU-CCC-- UAA-AGGGCU AU--AGGC-- 301 (UAUUUCCC- )--GUUU|GU AGCC-GCCC- --GAGGAUGG |GGCUACGG| CCCAUCA-G- 361 GCUGUCGGUG GG(GUAAAGG )CCCACCGA| ACCUA-UAAC GGGUAGGGG| CCGU(GGAA) 421 GCGG------ ---------- ----GAGCCU C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GAA A)GCGUGAGG 541 GC|GCUACCC CGAGUG-CC- ---------- (----)---- ---------U CC-GCAA--G 601 GA----GGC| UUUUCCCCGC U--------- ------(CUA AAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGUGAUU ACUGGGC|CU AAAGCGCCUG UAGCCG|GCC 781 CACCAAG|-- UCGCCCCUU- AAAGUCCCCG GC(UC-A)AC CGGGG-AAC- -UGGGGGCGA 841 UACUGGUG-G GCUA-GGGGG CGGGAGAGGC GGGG|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUUAGAU ACCGGGAGGA CCACCAGUGG C(GGAA)GCG C-CCCGCUAG AACGCGCCCG 961 ACGGUGAGAG GCGAAAGCCG GGGCAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCGAGUA GGC-(U-UA- GA)--GCCUA CUCGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGUA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGG-UAUUCU 1441 GGAC------ (UCCG-)--- -GUCC-AGA| ACCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAACGGGA-U -GCUACCUC( GAAA)GGGGG AGCCAAUC-C 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACCC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GAGAAAG-GG GUGA-G-GUC CC-UUGC--- -----(-GAU 1801 AA-)------ -GU-GGG-GG AUCGAACUC- CUUUCC-CGC GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUC~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Sul.thurng 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus "thuringiensis" str. Ron 12/I. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus "thuringiensis" str. Ron 12/I. ORGANISM Sulfolobus "thuringiensis". REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as Acidianus ambivalems combs. nov. JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X90485 isolate_name= Ron 12/I BASE COUNT 307 a 396 c 497 g 218 t 506 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 CGCUAUCGGG GUAGGGAUAA GCCAUGGGA- --GUCUUACA ---------- ----CUCCC( 121 -GGG--UAA) GGGAG----- -----|---U GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC CCCGAUA--G 241 GGAA--GGAG UCC-(UGGAA U--)-GGU-U CCUU-CCC-- UAA-AGGGCU AU--AGGC-- 301 (UAUUUCCC- )--GUUU|GU AGCC-GCCC- --GAGGAUGG |GGCUACGG| CCCAUCA-G- 361 GCUGUCGGUG GG(GUAAAGG )CCCACCGA| ACCUA-UAAC GGGUAGGGG| CCGU(GGAA) 421 GCGG------ ---------- ----GAGCCU C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GAA A)GCGUGAGG 541 GC|GCUACCC CGAGUG-CC- ---------- (----)---- ---------U CC-GCAA--G 601 GA----GGC| UUUUCCCCGC U--------- ------(CUA AAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGUGAUU ACUGGGC|CU AAAGCGCCUG UAGCCG|GCC 781 CACCAAG|-- UCGCCCCUU- AAAGUCCCCG GC(UC-A)AC CGGGG-AAC- -UGGGGGCGA 841 UACUGGUG-G GCUA-GGGGG CGGGAGAGGC GGGG|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUUAGAU ACCGGGAGGA CCACCAGUGG C(GGAA)GCG C-CCCGCUAG AACGCGCCCG 961 ACGGUGAGAG GCGAAAGCCG GGGCAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCGAGUA GGC-(U-UA- GA)--GCCUA CUCGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGUA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGG-UAUUCU 1441 GGAC------ (UCCG-)--- -GUCC-AGA| ACCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAACGGGA-U -GCUACCUC( GAAA)GGGGG AGCCAAUC-C 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACCC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GAGAAAG-GG GUGA-G-GUC CC-UUGC--- -----(-GAU 1801 AA-)------ -GU-GGG-GG AUCGAACUC- CUUUCC-CGC GAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sul.acald4 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus acidocaldarius str. 98-3 DSM 639. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus acidocaldarius str. 98-3 DSM 639. ORGANISM Sulfolobus acidocaldarius. REFERENCE 1 AUTHORS Ito,T., Yamasato,K. and Shioda,M. Takayanagi,S., Kawasaki,H., Sugimori,K., Yamada,T., Sugai,A., TITLE acidothermophilic archaeon Sulfolobus hakonensis sp. nov., a novel species of JOURNAL Int. J. Syst. Bacteriol. 46 (2), 377-382 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 639 Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14053|g1435060 DSM 639 = ATCC 27360 = ATCC 33909 (T) isolate_name= 98-3 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 317 a 399 c 501 g 225 t 482 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGU(UGA )UNCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUAGGGAUAA GCCAUGGGA- --GUCUUACA ---------- ----CUCCC( 121 -GGG--UAA) GGGAG----- -----|---U GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC CCCGAUA--G 241 GGAA--GGAG UCC-(UGGAA U--)-GGU-U CCUU-CCC-- UAA-AGGGCU AU--AGGC-- 301 (UAUUUCCC- )--GUUU|GU AGCC-GCCC- --GAGGAUGG |GGCUACGG| CCCAUCA-G- 361 GCUGUCGGUG GG(GUAAAGG )CCCACCGA| ACCUA-UAAC GGGUAGGGG| CCGU(GGAA) 421 GCGG------ ---------- ----GAGCCN C|CAGUUGGG NN(NNNAGA- CAAG)GGCCC 481 AGGCCC(UA. .)......AC CAGGCGCG-A AACGUCCCCA AUGCGC(GAA A)GCGUGAGG 541 GC|GCUACCC CGAGUN-NN- ---------- (----)---- ---------U CC-GCAA--G 601 GA----GGC| UUUUCCCCGC U--------- ------(CUA AAAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGNA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAN-|NUC CGCGAGUGGU CGGGGUGAUU ACUGGGC|CU AAAGCGCCUG UAGCCG|GCC 781 CACCAAG|-- UCGCCCCUU- AAAGUCCCCG GC(UC-A)AC CGGGG-AAC- -UGGGGGCGA 841 UACUGGUG-G GCUA-GGGGG CGGGAGAGGC GGGG|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUUAGAU ACCGGGAGGA CCACCAGUGG C(GGAA)GCG C-CCCGCUAG AACGCGCCCG 961 ACGGUGAGAG GCGAAAGCCG GGGCAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCGAGUA GGC-(U-UA- GA)--GCCUA CUCGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGUA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGG-UAUUCU 1441 GGAC------ (UCCG-)--- -GUCC-AGA| ACCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAACGGGA-U -GCUACCUC( GAAA)GGGGG AGCCAAUC-C 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACCC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GAGAAAG-GG GUGA-G-GUC CC-UUGC--- -----(-GAU 1801 AA-)------ -GU-GGG-GG AUCGAACUC- CUUUCC-CGC GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGC~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Sul.acald3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus acidocaldarius str. N8. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus acidocaldarius str. N8. ORGANISM Sulfolobus acidocaldarius. REFERENCE 1 AUTHORS Kurosawa,N. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D38777|g938030 isolate_name= N8 BASE COUNT 188 a 242 c 299 g 129 t 1066 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CUC CGCGAGUGGU CGGGGUGAUU ACUGGGC|CU AAAGCGCCUG UAGCCG|GCC 781 CACCAAG|-- UCGCCCCUU- AAAGUCCCCG GC(UC-A)AC CGGGG-AAC- -UGGGGGCGA 841 UACUGGUG-G GCUA-GGGGG CGGGAGAGGC GGGG|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUUAGAU ACCGGGAGGA CCACCAGUGG C(GGAA)GCG C-CCCGCUAG AACGCGCCCG 961 ACGGUGAGAG GCGAAAGCCG GGGCAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCGAGUA GGC-(U-UA- GA)--GCCUA CUCGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGUA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGG-UAUUCU 1441 GGAC------ (UCCG-)--- -GUCC-AGA| ACCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAACGGGA-U -GCUACCUC( GAAA)GGGGG AGCCAAUC-C 1621 UUAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACCC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sul.spB6 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus sp. str. B6/2. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus sp. str. B6/2. ORGANISM Sulfolobus sp. REFERENCE 1 AUTHORS Norris,P.R., Waterhouse,S. and Burton,N.P. TITLE Phylogeny of Thermoacidophilic Iron-oxidising Archaea JOURNAL FEMS Microbiol. Lett. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38360|g1063649 isolate_name= B6/2 BASE COUNT 303 a 401 c 506 g 210 t 504 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ...CCCG-AC 61 CGCUAUCGGG GUAGGGCUAA GCCAUGGGA- --GUCUUACA ---------- ----CCCCC( 121 -GGG---AA) GGGGG----- -----|---U GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC CCCGAUA--G 241 GGGA--AGAG UCC-(UGGAA C--)-GGU-U CUUC-CCC-- UAA-ACGGUU AU--GGGC-- 301 (-UGUUCCC- )--GCUC|AU AACC-GCCC- --GAGGAUGG |GGCCGCGG| CCCAUCA-G- 361 GCUGUUGGCG GG(GUAAAGG )CCCGCCAA| ACCUA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GGGCCC C|CAGUUGGA CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AAGCUCCCCA AUGCGC(GAA A)GCGUGAGG 541 GC|GCUACCC CGAGUG-CC- ---------- (----)---- ---------U CC-GAAA--G 601 GA----GGC| UUUUCCCCGC U--------- ------(CGA AUAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGNA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGCGCUU ACUGGGC|CU AAAGCGCCUG UAGCCG|GCC 781 CACCAAG|-- UUACCCCUU- AAAGACCCGA GC(UC-A)AC UCGGG-GAC- -UGGGGGUAA 841 UACUGGUG-G GCUA-GGGGG CGGGAGAGGC GGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCGUAGAU ACCGGGAGGA CCACCAGUGG C(GGAG)GCG U-CCCGCUAG AACGCGCCCG 961 ACGGUGAGAG GCGAAAGCCG GGGCAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCAGACG GGC-(U-UA- GG)--GCCUG UCUGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GGU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAA-U UGG-UAUCAC 1441 GGGC------ (UCCG-)--- -GCUC-GUG| ACCACA-UUA GGGGGACUGC CAGC(GU-UA 1501 A)GCUGGAGG AAGGAGGGGG CCACGGCAGG UCAACAUGUC CCGAAACCCC CGGGUCGUAC 1561 GCGGGUUACA AUGGCAGGGA CAGNGGGA-U -GCUACCCC( GAAA)GGGGG AGNCAAUCCC 1621 CCAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGGAACCC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGNACACACC 1741 GCCCGUCGCU CCACCCGAGC GGAAGAG-GG GUGA-G-GUU CC-CUGC--- -----(-GAU 1801 GA-)------ -GU-GGG-GA AACGAACUC- CUCUUC-CGC GAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sl.azoricu 1924 bp RNA RNA 02-JUL-1998 DEFINITION Stygiolobus azoricus. ACCESSION No information KEYWORDS No information. SOURCE Stygiolobus azoricus. ORGANISM Stygiolobus azoricus. REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE Acidianus ambivalems combs. nov. 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X90480 BASE COUNT 298 a 406 c 507 g 205 t 508 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .........C 61 CGCUAUCGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACA ---------- ----CCCCC( 121 -GGG---AA) GGGGG----- -----|---U GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC CCCGAUA--G 241 GGGA--AGAG UCC-(UGGAA C--)-GGU-U CUUC-CCC-- UAA-AGGGCU AU--GGGC-- 301 (-UGUUCCC- )--GCUC|AU AGCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GCUGUUGGCG GG(GUAAAGG )CCCGCCAA| ACCUA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGC(GAA A)GCGUGAGG 541 GC|GCUACCC CGAGUG-CC- ---------- (----)---- ---------U CC-GAAA--G 601 GA----GGC| UUUUCCCCGC U--------- ------(CUA AUAA--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGGCGCUU ACUGGGC|CU AAAGCGCCUG UAGCCG|GCC 781 CACCAAG|-- UUACCCCUU- AAAGACCCGA GC(UC-A)AC UCGGG-GAC- -UGGGGGUAA 841 UACUGGUG-G GCUA-GGGGG CGGGAGAGGC GGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCGUAGAU ACCGGGAGGA CCACCAGUGG C(GGAG)GCG U-CCCGCUAG AACGCGCCCG 961 ACGGUGAGAG GCGAAAGCCG GGGCAGCAAA CGGG(AUUAG AUAC)CCCGG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCAGACG GGC-(U-UA- GA)--GCCCG UCUGG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAAUGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGG-CAUCAU 1441 GGGC------ (UCCG-)--- -GCCC-GUG| ACCACA-CUA GGGGGACUGC CGGC(G--UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC CGGGUCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U -GCUACCCC( GAAA)GGGGG AGCCAAUCCC 1621 CCAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGGAACCC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGC GGAAGAG-GG GUGA-G-GUU CC-CUGC--- -----(-GAU 1801 GA-)------ -GU-GGG-GA AACGAACUC- CUCUUC-CGC GAGGGGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Adi.spTA1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Acidianus sp. str. TA1. ACCESSION No information KEYWORDS No information. SOURCE Acidianus sp. str. TA1. ORGANISM Acidianus sp. REFERENCE 1 AUTHORS Kurosawa,N. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D38775|g938019 isolate_name= TA1 BASE COUNT 189 a 245 c 300 g 125 t 1065 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CUC CGCGAGUGGU CGGGACGCUU ACUGGGC|CU AAAGCGCCUG UAGCCG|GCC 781 CACUAAG|-- UCGCCCCUU- AAAGACCCGG GC(UC-A)AC CCGGG-AAA- -CGGGGGCGA 841 UACUGGUG-G GCUA-GGGGG CGGGAGAGGC UAGG|GGUAC UCCCAGAGGA GGG(GCGAAA 901 )UCCGUAGAU CCUGGGAGGA CCACCAGUGG C(GGAG)GCG C-CUAGCUAG AACGCGCCCG 961 ACGGUGAGAG GCGAAAGCCG GGGCAGCAAA UGUG(AUUAG AUAC)CCCAG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUCAGGUG GGC-(U-UA- GA)--GCUCA CCUGG-UGCC 1081 GCA-G(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGUC(GCAA) GACUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCA |CCCCUAG-U UGG-UAUCCC 1441 CAUC------ (UCCG-)--- -GAUG-GGG| GCCACA-CUA GGGGGACUGC CGCC(G--UA 1501 A)GGCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U UGCGACCCC( GAAA)GGGGG AGCCAAUCCC 1621 CCAAACCCUG CCGCAGUUGG GAUCGAGGGC (UGAAACCC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.2.1.5-AC 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.1.5 ACIDIANUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.1.5 ACIDIANUS_GROUP. ORGANISM 1.2.1.5 ACIDIANUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.2.1.5.1 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.1.5.1 ADI.INFERNUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.1.5.1 ADI.INFERNUS_SUBGROUP. ORGANISM 1.2.1.5.1 ADI.INFERNUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Adi.infern 1924 bp RNA RNA 02-JUL-1998 DEFINITION Acidianus infernus. ACCESSION No information KEYWORDS No information. SOURCE Acidianus infernus. ORGANISM Acidianus infernus. REFERENCE 1 AUTHORS Kurosawa,N. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D38773|g938018 BASE COUNT 192 a 244 c 299 g 126 t 1063 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CCC CGCGAGUGGU CGGGACGCUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CUGCAAG|-- UCACUGCUU- AAAGACCCGG GC(UC-A)AC CCGGG-GAA- -GGGCAGUGA 841 UACUGCAG-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCACAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGC-G GGGUAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GA)--GCCUA CGCGG-UGCC 1081 GCAGG(GAAA )CCGGUAAGC CUGC|C|GCC UGGGGAGUAC GCCC(GCAA) GGGUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCUUAG-U UGG-UAUCCC 1441 GGUC------ (UCCG-)--- -GACC-GGG| ACCACA-CUA AGGGGACUGC CGGC(GU-UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGAUU UCCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 UCAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Adi.infer2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Acidianus infernus. ACCESSION No information KEYWORDS No information. SOURCE Acidianus infernus. ORGANISM Acidianus infernus. REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE Acidianus ambivalens comb. nov. 16S rDNA-based phylogeny of the Archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X89852|g1050424 BASE COUNT 304 a 413 c 504 g 207 t 496 others ORIGIN 1 .......... .......... .......... ......(... )....|..CC GGACCCG-AC 61 CGCUAUGGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CCCUC( 121 -GGG--UAA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACCCGGAU AACUC--CG- G(-GAAA)CU GGAGCUAAUC CGGGGCA--G 241 GCGA--AGGG UAC-(UGGAA C--)-GUC-C CUUC-GCC-- UAA-AGGGGC AU--GGGC-- 301 (UAUUUCCC- )--GCUC|AU GCCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GCUGUUGGCG GG(GUAACGG )CCCGCCAA| ACCGA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCC-(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GCUACCC CCAGUG-CU- ---------- (----)---- ---------C CC-GAAA--G 601 GG----AGC| UUUUCCCCGC U--------- ------(UUA AAAC--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACGCUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CUGCAAG|-- UCACUGCUU- AAAGACCCGG GC(UC-A)AC CCGGG-GAA- -GGGCAGUGA 841 UACUGCAG-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCACAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGUAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GA)--GCCUA C-CGG-UGCC 1081 GCAGG(GAAA )CCGGUAAGC CUGC|C|GCC UGGGGAGUAC GCCC(GCAA) GGGUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCUUAG-U UGG-UAUCCC 1441 GGUC------ (UCCG-)--- -GACC-GGG| ACCACA-CUA AGGGGACUGC CGGC(GU-UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U UCCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 UCAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GAGGAGG-AA GUGA-G-GCU CC-UUGC--U -----(--UC 1801 GG-)-----G -GU-GGG-GA GUCGAACUU- CCUCCU-CGC GAGGGGG... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Adi.ambiv2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Acidianus ambivalens. ACCESSION No information KEYWORDS No information. SOURCE Acidianus ambivalens. ORGANISM Acidianus ambivalens. REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as Acidianus ambivalems combs. nov. JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X90484 Former RDP Sids: Dfl.ambiv2 NB: former name Desulfurolobus ambivalens BASE COUNT 304 a 408 c 502 g 208 t 502 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .........C 61 CGCUAUGGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CCCUC( 121 -GGG--UAA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACCCGGAU AACUC--CG- G(-GAAA)CU GGAGCUAAUC CGGGGCA--G 241 GCGA--AGGG UAC-(UGGAA C--)-GUC-C CUUC-GCC-- UAA-AGGGGC AU--GGGC-- 301 (UAUUUCCC- )--GCUC|AU GCCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GCUGUUGGCA GG(GUAACGG )CCCGCCAA| ACCGA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCC-(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GCUACCC CCAGUG-CU- ---------- (----)---- ---------C CC-GAAA--G 601 GG----AGC| UUUUCCCCGC U--------- ------(UUA GAAC--)--- ---------- 661 ----GGCGGG GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACGCUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CUGCAAG|-- UCACUGCUU- AAAGACCCGG GC(UC-A)AC CCGGG-AAA- -GGGCAGUGA 841 UACUGCAG-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCACAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGUAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GG)--GCCUA CGCGG-UGCC 1081 GCAGG(GAAA )CCGGUAAGC CUGC|C|GCC UGGGGAGUAC GCCC(GCAA) GGGUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCUUAG-U UGG-UAUCCC 1441 GGUC------ (UCCG-)--- -GACC-GGG| ACCACA-CUA AGGGGACUGC CGGC(GU-UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U UCCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 UCAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GAGGAAG-AA GUGA-G-GCU CC-UUGC--C -----(-UUC 1801 GG-)-----G -GU-GGG-GA GUCGAACUU- CUUCCU-CGC GAGGGGGGA. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Adi.ambivl 1924 bp RNA RNA 02-JUL-1998 DEFINITION Acidianus ambivalens. ACCESSION No information KEYWORDS No information. SOURCE Acidianus ambivalens. ORGANISM Acidianus ambivalens. REFERENCE 1 AUTHORS Kurosawa,N. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D38774|g938022 Former RDP Sids: Dfl.ambivl NB: former name Desulfurolobus ambivalens BASE COUNT 192 a 244 c 299 g 125 t 1064 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CCC CGCGAGUGGU CGGGACGCUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CUGCAAG|-- UCACUGCUU- AAAGACCCGG GC(UC-A)AC CCGGG-AAA- -GGGCAGUGA 841 UACUGCAG-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCACAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGC-G GGGUAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GG)--GCCUA CGCGG-UGCC 1081 GCAGG(GAAA )CCGGUAAGC CUGC|C|GCC UGGGGAGUAC GCCC(GCAA) GGGUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCUUAG-U UGG-UAUCCC 1441 GGUC------ (UCCG-)--- -GACC-GGG| ACCACA-CUA AGGGGACUGC CGGC(GU-UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U UCCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 UCAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS str.ICHT 1924 bp RNA RNA 02-JUL-1998 DEFINITION str. ICHT. str. ICHT. ACCESSION No information KEYWORDS No information. SOURCE str. ICHT. str. ICHT. ORGANISM str. ICHT. REFERENCE 1 AUTHORS Norris,P.R., Waterhouse,S. and Burton,N.P. TITLE Phylogeny of Thermoacidophilic Iron-oxidising Archaea JOURNAL FEMS Microbiol. Lett. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38362|g1063651 isolate_name= ICHT BASE COUNT 304 a 410 c 506 g 209 t 495 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ...CCCG-AC 61 CGCUAUGGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CCCUC( 121 -GGG--UAA) GAGGG----- -----|---C GUGGGGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGACCCGGAU AACUC--CG- G(-GAAA)CU GGAGCUAAUC CGGGGCA--G 241 GCGA--AGGG UAC-(UGGAA C--)-GUC-C CUUC-GCC-- UAA-AGGGGC AU--GGGC-- 301 (UAUUUCCC- )--GCUC|AU GCCC-GCCC- --GAGGAUGG |GGCUGCGG| CCUAUCA-G- 361 GCUGUUGGCG GG(GUAACGG )CCCGCCAA| ACCGA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GCUACCC CCAGUG-CU- ---------- (----)---- ---------C CC-GAAA--G 601 GG----AGC| UUUUCCCCGC U--------- ------(UUA GAAC--)--- ---------- 661 ----GGNGGG GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UCA--GUCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACGCUU ACUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 CUGCAAG|-- UCACUGCGU- AAAGACCCGG GC(UC-A)AC CCGGG-AAA- -GGGCAGUGA 841 UACUGCAG-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCACAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCCAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGUAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GC)--GCCUA CGCGG-UGCC 1081 GCAGG(GAAA )CCGGUAAGC CUGC|C|GCC UGGGGAGUAC GCCC(GCAA) GGGUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCCUUAG-U UGG-UAUCCC 1441 GGUC------ (UCCG-)--- -GACC-GGG| ACCACA-CUA AGGGGACUGC CGGC(GU-UA 1501 A)GCCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACCCC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U UCCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 UCAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GAGGAAG-AA GUGA-G-GCU CC-UUGC--C C----(--UU 1801 CG-)----GG -GU-GGG-GA GUCGAACUU- CUUCCU-CGC GAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.2.1.5.2 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.1.5.2 METALLOSPHAERA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.1.5.2 METALLOSPHAERA_SUBGROUP. ORGANISM 1.2.1.5.2 METALLOSPHAERA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS Adi.brier3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Acidianus brierleyi. ACCESSION No information KEYWORDS No information. SOURCE Acidianus brierleyi. ORGANISM Acidianus brierleyi. REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE Acidianus ambivalems combs. nov. 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X90477 DSM 1651 = IFO 15269 BASE COUNT 331 a 387 c 495 g 247 t 464 others ORIGIN 1 .......... .......... .......... .CCGGU(UGA )UCCU|-GCC GGACCAG-AU 61 CGCUAUGGGG AUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCUC( 121 -GGU---AA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGUCAA 181 CCUAACCUCG GGACUUGGAU ACCUC--CG- G(-GAAA)CU GGAGCUAAUC CAAGAUA--G 241 GCAA--AGGA AUC-(UGGAA C--)-GAU-C CUUU-GCU-- UAA-AGGCCU CU--AGGC-- 301 (UAAUACU-- )--GUCU|AG AGGU-GCCC- --GAGGAUGG |GACUGCGG| CCCAUCA-G- 361 GCUGUUGGUG GG(GUAAUGG )CCCACCAA| ACCGA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAU)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGC-GA AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GCUAUCC CCAGUG-CC- ---------- (----)---- ---------U CC-GAUA--G 601 GA----GGC| UUUUCCCCAC U--------- ------(UUA GAAC--)--- ---------- 661 ----GGUGGG GG-AAUAAGC GGGGGGCA-A GGCUG-GUG( UC--AGCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGAU CUGGACGUUU AUUGGGC|UU GAAGCGCCCG UAGCCG|GCC 781 CAUAAAG|-- UCACUGUUU- AAAGACCCGG GC(UC-A)AC CCGGG-AAA- -GGGCAGUGA 841 UACUUAUG-G GCUA-GGGGG CGGGAAAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCGUAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGCAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUG GGU-(C-UA- GA)--GCCCG CGCGG-UGCC 1081 GCAGG(GAAA )CCGGUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGAGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGUG UGACGGUCAG GCUAAUGA-C 1321 CUUACC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCUCUAA-U UGG-CAUUCU 1441 CUCC------ (CCCG-)--- -GGAG-GGA| CCCACA-UUA GAGGGACUGC CGUC(G--UU 1501 A)AGACGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUUC UGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAACGGGA-G UCCAACCUC( GAAA)GGGGG AGGUAAUCCC 1621 UUAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAAUUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GGAGAAG-AA GUGA-G-GUU UC-UUGC--C -----(-UUC 1801 GG-)-----G -GU-GGG-GA AUCGAACUU- CUUCUC-CGC GAGGGGGGAG AAGUCGUAAC 1861 AAGGUA.... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Adi.brier2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Acidianus brierleyi. ACCESSION No information KEYWORDS No information. SOURCE Acidianus brierleyi. ORGANISM Acidianus brierleyi. REFERENCE 1 AUTHORS Kurosawa,N., Ohkura,K., Horiuchi,T. and Itoh,Y.H. TITLE Characterization of the 16s ribosomal RNA genes and phylogenetic relationships of sulfur-dependent thermoacidophilic archaebacteria JOURNAL J. Gen. Appl. Microbiol. 41, 75-81 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D26489|g1054563 (bases 303 to 1792) IFO 15269 = DSM 1651 BASE COUNT 341 a 400 c 508 g 258 t 417 others ORIGIN 1 .......... .......... .......... UCCGGU(UGA )UCCU|-GCC GGACCAG-AU 61 CGCUAUGGGG AUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCUC( 121 -GGU---AA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGUCAA 181 CCUAACCUCG GGACUUGGAU ACCUC--CG- G(-GAAA)CU GGAGCUAAUC CAAGAUA--G 241 GCAA--AGGA AUC-(UGGAA C--)-GAU-C CUUU-GCU-- UAA-AGGCCU CU--AGGC-- 301 (UAAUACU-- )--GUCU|AG AGGU-GCCC- --GAGGAUGG |GACUGCGG| CCCAUCA-G- 361 GCUGUUGGUG GG(GUAAUGG )CCCACCAA| ACCGA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAU)GGCCC 481 AGG-C-(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GCUAUCC CCAGUG-CC- ---------- (----)---- ---------U CC-GAUA--G 601 GA----GGC| UUUUCCCCAC U--------- ------(UUA GAAC--)--- ---------- 661 ----GGUGGG GG-AAUAAGC GGGGGGCA-A GGCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGAU CUGGACGUUU AUUGGGC|UU GAAGCGCCCG UAGCCG|GCC 781 CAUAAAG|-- UCACUGUUU- AAAGACCCGG GC(UC-A)AC CCGGG-AAA- -GGGCAGUGA 841 UACUUAUG-G GCUA-GGGGG CGGGAAAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCGUAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGCAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUG GGU-(C-UA- GA)--GCCCG CGCGG-UGCC 1081 GCAGG(GAAA )CCGGUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAAC- -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGAGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGUG UGACGGUCAG GCUAAUGA-C 1321 CUUACC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CCUCUAA-U UGG-CAUUCU 1441 CUCC------ (CCCG-)--- -GGAG-GGA| CCCACA-UUA GAGGGACUGC CGUC(GU-UA 1501 A)GACGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUUC UGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAACGGGA-G UCCAACCUC( GAAA)GGGGG AGGUAAUCCC 1621 UUAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAAUUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU -GAGAAG-AA GUGA-G-GUU UC-UUGC--C -----(-UUC 1801 GG-)-----G -GU-GGG-GA AUCGAACUU- CUUCUC-CGC GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCA CAUA|AAGCU CCCCUGUU~~ 1921 ~~~| // LOCUS Adi.brierl 1924 bp RNA RNA 02-JUL-1998 DEFINITION Acidianus brierleyi.. ACCESSION No information KEYWORDS No information. SOURCE Acidianus brierleyi. ORGANISM Acidianus brierleyi. REFERENCE 1 AUTHORS Norris,P.R., Waterhouse,S. and Burton,N.P. TITLE Phylogeny of Thermoacidophilic Iron-oxidising Archaea JOURNAL FEMS Microbiology Letters. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38359|g1063648 BASE COUNT 321 a 377 c 480 g 245 t 501 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ...CCAG-AU 61 CGCUAUGGGG AUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCUC( 121 -GGU---AA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGUCAA 181 CCUAACCUCG GGACUUGGAU ACCUC--CG- G(-GAAA)CU GGAGCUAAUC CAAGAUA--G 241 GCAA--AGGA AUC-(UGGAA C--)-GAU-C CUUU-GCU-- UAA-AGGCCU CU--AGGC-- 301 (UAAUACUG- )--UCUA|GA GGUG-CCCC- --GAGGAUGG |GACUGUGG| CCCAUCA-G- 361 GCUGUUGUUG GN(GUAAUGG )CCCACCAA| ACCGA-UAAC GGGUAGCGG| CCCU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAU)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-A AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GCUAUCC CCAGUG-CC- ---------- (----)---- ---------U CC-GAUA--- 601 GG----AG-| UUUUCCCCAC U--------- ------(UUA GAAC--)--- ---------- 661 ----GGUGGG GG-AAUANGC GGGGGGCA-A GGCUG-GUG( UCA--GNCGC GGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGAU CUGGACGUUU AUUGGGC|UU GAAGCGCCCG UAGCCG|GCC 781 CAUAAAG|-- UCACUGUUU- AAAGACCCGG GU(UC-A)AC CCGGG-AAA- -GGGCAGUGA 841 UACUUAUG-G UCUA-GGGGG CGGGAAAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCGUAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGCAGCAAA AGGG(AUUAG AUAC)CCCUG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUG GGU-(C-UA- GA)--GCCCG CGCGG-UGCC 1081 GCAGG(GAAA )CCGGUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUUAC CGGAGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGUG UGACGGUCAG GCUAAUGA-C 1321 CUUACC-UGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGUAACGAGC GAGACCCCCA |CCUCUAA-U UGG-CAUUCU 1441 CUCC------ (CCCG-)--- -GGAG-GGA| CCCACA-UUA GAGGGACUGC CGUC(GU-UA 1501 A)GACGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUUC UGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAACGGGA-G UCCAACCUC( GAAA)GGGGG AGGUAAUCCC 1621 UUAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAAUUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCACG(UCAA CAA)CGUGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GGAGAAG-AA GUGA-G-GUU UC-UUGC--C C----(--UU 1801 CG-)-----G -GU-GGG-GA AUCGAACUU- CUUCUC-CGC GAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Sul.hakons 1924 bp RNA RNA 02-JUL-1998 DEFINITION Sulfolobus hakonensis str. H. ACCESSION No information KEYWORDS No information. SOURCE Sulfolobus hakonensis str. H. ORGANISM Sulfolobus hakonensis. REFERENCE 1 AUTHORS Takayanagi,S., Kawasaki,H., Sugimori,K., Yamada,T., Sugai,A., Ito,T., Yamasato,K. and Shioda,M. TITLE Sulfolobus hakonensis sp. nov., a novel species of acidothermophilic archaeon JOURNAL Int. J. Syst. Bacteriol. 46 (2), 377-382 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D14052|g1434853 isolate_name= H NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 311 a 376 c 500 g 224 t 513 others ORIGIN 1 .......... .......... ........AU UCCGGU(UGA )UCCU|-GCC GGNNNNG-AU 61 NGCUAUAGGG GUAGGGAUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCUC( 121 -GGG--NAA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUGCCCUUG GNACCCGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CGGGGCA--G 241 AUAA--GGGG AUC-(UGGAA C--)-GAC-C UCUU-AUC-- UAA-AUGCCU CC--CGGC-- 301 (UGNAUCCC- )--GUCG|GG AGGU-GCCC- --AAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GCUGUUGGGG GA(GUAAAGG )UCCCCCAA| ACCGA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGNNC(UAC G)GNNNNCAC CAGGCGC-GG AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GUUACCC CUAGUN-NC- ---------- (----)---- ---------C UN-GCAA--G 601 AG----GGC| U........C N--------- ------(NNA GAAC--)--- ---------- 661 ----GGUGGA GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UC--AGCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGAU CGGGACGUUU AUUGGGC|UU AAAGCGCCNG UAGCCG|GCC 781 UGUAAAG|-- UCACCGUUU- AAAGACCCGG GC(UC-A)AC UCGGG-GAA- -CGGCGGUGA 841 UACUUACA-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GNGAAA 901 )UCCUUAGAU CCCGGGAGGA CNACCAGUGG C(GAAA)GCG U-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGUAGCAAA UAGG(AUUAG AUAC)CCUAG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GG)--GCCUA CGCGG-UGCC 1081 GCAGG(AAAA )CUGGUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CUUCUAG-U UGG-UAAUUG 1441 UCUC------ (UCUG-)--- -GAGA-CGG| UCCACA-CUA GAAGGACUGC CGGU(GU-UA 1501 A)ACCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUUC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U -CUGACCCC( GAAA)GGGG- AGGCAAUCCC 1621 ACAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GGAGGGG-AA GUGA-G-GCC UC-UUGN--N N----(---- 1801 -G-)----GG -GU-GGG-AG GUCGAGCUN- CUCCUC-CGC GAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mts.sedul2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Metallosphaera sedula.. ACCESSION No information KEYWORDS No information. SOURCE Metallosphaera sedula. ORGANISM Metallosphaera sedula. REFERENCE 1 AUTHORS Norris,P.R., Waterhouse,S. and Burton,N.P. TITLE Phylogeny of Thermoacidophilic Iron-oxidising Archaea JOURNAL FEMS Microbiol. Lett. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U38361|g1063650 BASE COUNT 309 a 394 c 501 g 223 t 497 others ORIGIN 1 .......... .......... .......... ......(... )....|.... ...CCCG-AU 61 CGCUAUAGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCUC( 121 -GGG--UAA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUGCCCUUG GGAUCUGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CGGAGCG--G 241 GCAG--GGGA AUC-(UGGAA U--)-GAU-C UCUU-GCC-- UAA-AAGCCU CU--CGGC-- 301 (UGAUCCCG- )--UCGA|GA GGCG-NCCC- --AAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GCUGUUGGGG GA(GUAAAGG )UCCCCCAA| ACCCA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-G AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GUUACCC CUAGUG-CC- ---------- (----)---- ---------C UC-GCAA--G 601 AG----GGC| UUUUCUCCAC U--------- ------(CCA GAAA--)--- ---------- 661 ----GGUGGA GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGAU CGGGACGUUU AUUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 UGUAAAG|-- UCACCGUUU- AAAGACCCGG GC(UC-A)AC UCGGG-GAA- -CGGCGGUGA 841 UACUUACA-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUCAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGUAGCAAA UAGG(AUUAG AUAC)CCUAG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GU)--GCCUG CGCGG-UGCC 1081 GCAGG(AAAA )CUGGUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGNUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGGAACGAGC GAGACCCCCA |CUUCUAG-U UGG-UAACCG 1441 UCUC------ (UCCG-)--- -GGAG-CGG| UCCACA-CUA GAAGGACUGC CGGU(GU-UA 1501 A)ACCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUUC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U -CCGACCCC( GAGA)GGGGA AGGCAAUCCC 1621 ACAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUAA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GGAGGGG-AA GUGA-G-GCC UC-UUGC--C C----(--CU 1801 CG-)----GG -GU-GGG-AG GUCGAGCUU- CUCCUC-CGC GAGGGGGGAG .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mts.sedula 1924 bp RNA RNA 02-JUL-1998 DEFINITION Metallosphaera sedula. ACCESSION No information KEYWORDS No information. SOURCE Metallosphaera sedula. ORGANISM Metallosphaera sedula. REFERENCE 1 AUTHORS Kurosawa,N., Ohkura,K., Horiuchi,T. and Itoh,Y.H. TITLE Characterization of the 16s ribosomal RNA genes and phylogenetic relationships of sulfur-dependent thermoacidophilic archaebacteria JOURNAL J. Gen. Appl. Microbiol. 41, 75-81 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D26491|g1054585 (bases 824 to 2316) IFO 15509 = DSM 5348 BASE COUNT 332 a 424 c 532 g 246 t 390 others ORIGIN 1 .......GGU GAAAGGUUAG CUGCCCUAAU UCCGGU(UGA )UCCU|-GCC GGACCCG-AU 61 CGCUAUAGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCUC( 121 -GGG---AA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUGCCCUUG GGAUCUGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CGGAGCG--G 241 GCAA--GGGA AUC-(UGGAA U--)-GAU-C UCUU-GCC-- UAA-AAGCCU CU--CGGC-- 301 (-UGAUCCC- )--GUCG|AG AGGC-GCCC- --AAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GCUGUUGGGG GA(GUAAAGG )UCCCCCAA| ACCGA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGCGCAC CAGGCGCG-G AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GUUACCC CUAGUG-CC- ---------- (----)---- ---------C UC-GCAA--G 601 AG----GGC| UUUUCUCCAC U--------- ------(CCA GAAA--)--- ---------- 661 ----GGUGGA GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGAU CGGGACGUUU AUUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 UGUAAAG|-- UCACCGUUU- AAAGACCCGG GC(UC-A)AC UCGGG-GAA- -CGGCGGUGA 841 UACUUACA-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUCAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGUAGCAAA UAGG(AUUAG AUAC)CCUAG UAGUCCCGGC 1021 UGUAGACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GU)--GCCUG CGCGG-UGCC 1081 GCAGG(AAAA )CUGGUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CUUCUAG-U UGG-UAACCG 1441 UCUC------ (UCCG-)--- -GAGA-CGG| UCCACA-CUA GAAGGACUGC CGGU(GU-UA 1501 A)ACCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUUC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U -CCGACCCC( GAGA)GGGGA AGGCAAUCCC 1621 GCAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GGAGGGG-AA GUGA-G-GCC UC-UUGC--C C----(--CU 1801 CG-)----GG -GU-GGG-AG GUCGAGCUU- CUCCUC-CGC GAGGGGGGAG AAGUCGUAAC 1861 AAGGUAGCCG UAGG(GGAA) CCUGCGGCUG GAUCACCUCA CAUU|UGUGC UCCCCACA~~ 1921 ~~~| // LOCUS Mts.sedul3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Metallosphaera sedula. ACCESSION No information KEYWORDS No information. SOURCE Metallosphaera sedula. ORGANISM Metallosphaera sedula. REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Teiner,K., Burggraf,S. and Stetter,K.O. TITLE Metallosphaera prunae, sp. nov., a novel metal-mobilizing, thermoacidophilic archeum, isolated from a uranium mine in Germany JOURNAL Syst. Appl. Microbiol. 18, 560-566 (1995) STANDARD No information REFERENCE 2 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as Acidianus ambivalems combs. nov. JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: X90481 DSM 5348 = IFO 15509 BASE COUNT 308 a 390 c 496 g 222 t 508 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .........U 61 CGCUAUAGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCUC( 121 -GGG---AA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUGCCCUUG GGAUCUGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CGGAGCG--G 241 GCAA--GGGA AUC-(UGGAA U--)-GAU-C UCUU-GCC-- UAA-AAGCCU CU--CGGC-- 301 (-UGAUCCC- )--GUCG|AG AGGC-GCCC- --AAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GCUGUUGGGG GA(GUAAAGG )UCCCCCAA| ACCGA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCC-(UAC G)GGGCGCAC CAGGCGCG-G AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GUUACCC CUAGUG-CC- ---------- (----)---- ---------C UC-GCAA--G 601 AG----GGC| UUUUCUCCAC U--------- ------(CCA GAAA--)--- ---------- 661 ----GGUGGA GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGAU CGGGACGUUU AUUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 UGUAAAG|-- UCACCGUUU- AAAGACCCGG GC(UC-A)AC UCGGG-GAA- -CGGCGGUGA 841 UACUUACA-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUCAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGUAGCAAA UAGG(AUUAG AUAC)CCUAG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GU)--G-CUG CGCGG-UGCC 1081 GCAGG(AAAA )CUGGUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CUUCUAG-U UGG-UAACCG 1441 UCUC------ (UCCG-)--- -GAGA-CG-| UCCACA-CUA GAAGGACUGC CGGU(GU-UA 1501 A)ACCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUUC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U -CCGACCCC( GAGA)GGGGA AGGCAAUCCC 1621 ACAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GGAGGGG-AA GUGA-G-GCC UC-UUGC--C C----(--CU 1801 CG-)----GG -GU-GGG-AG GUCGAGCUU- CUCCUC-CGC GAGGGGG... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mts.prunae 1924 bp RNA RNA 02-JUL-1998 DEFINITION Metallosphaera prunae str. Ron 12/II DSM 10039 (T). ACCESSION No information KEYWORDS No information. SOURCE Metallosphaera prunae str. Ron 12/II DSM 10039 (T). ORGANISM Metallosphaera prunae. REFERENCE 1 AUTHORS Fuchs,T., Huber,H., Teiner,K., Burggraf,S. and Stetter,K.O. TITLE Metallosphaera prunae, sp. nov., a novel metal-mobilizing, thermoacidophilic archeum, isolated from a uranium mine in Germany JOURNAL Syst. Appl. Microbiol. 18, 560-566 (1995) STANDARD No information REFERENCE 2 AUTHORS Fuchs,T., Huber,H., Burggraf,S. and Stetter,K.O. TITLE 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulfurolobus ambivalens as Acidianus ambivalems combs. nov. JOURNAL Syst. Appl. Microbiol. 19, 56-60 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 10039 (T) Sequence information (bases 1 to 1924) Corresponding GenBank entry: X90482 isolate_name= Ron 12/II BASE COUNT 308 a 391 c 499 g 222 t 504 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .........U 61 CGCUAUAGGG GUAGGGCUAA GCCAUGGGA- --GUCGUACG ---------- ----CUCUC( 121 -GGG---AA) GAGGG----- -----|---C GUGGCGGACG GCUGAGUAAC ACGUGGCUAA 181 CCUGCCCUUG GGAUCUGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUC CGGAGCG--G 241 GCAA--GGGA AUC-(UGGAA U--)-GAU-C UCUU-GCC-- UAA-AAGCCU CU--CGGC-- 301 (-UGAUCCC- )--GUCG|AG AGGC-GCCC- --AAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GCUGUUGGGG GA(GUAAAGG )UCCCCCAA| ACCGA-UAAC GGGUAGGGG| CCGU(GGGA) 421 GCGG------ ---------- ----GAGCCC C|CAGUUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGGCC(UAC G)GGGCGCAC CAGGCGC-GG AACGUCCCCA AUGCGG(GAA A)CCGUGAGG 541 GC|GUUACCC CUAGUG-CC- ---------- (----)---- ---------C UC-GCAA--G 601 AG----GGC| UUUUCUCCAC U--------- ------(CCA GAAA--)--- ---------- 661 ----GGUGGA GG-AAUAAGC GGGGGGCA-A GACUG-GUG( UC--AGCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGAU CGGGACGUUU AUUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 UGUAAAG|-- UCACCGUUU- AAAGACCCGG GC(UC-A)AC UCGGG-GAA- -CGGCGGUGA 841 UACUUACA-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUCAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCUAG AACGCGCCCG 961 ACGGUGAGGG GCGAAAGCCG GGGUAGCAAA UAGG(AUUAG AUAC)CCUAG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GU)--GCCUG CGCGG-UGCC 1081 GCAGG(AAAA )CUGGUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CUUCUAG-U UGG-UAACCG 1441 UCUC------ (UCCG-)--- -GAGA-CGG| UCCACA-CUA GAAGGACUGC CGGU(GU-UA 1501 A)ACCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUUC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U -CCGACCCC( GAGA)GGGGA AGGCAAUCCC 1621 ACAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGU GGAGGGG-AA GUGA-G-GCC UC-UUGC--C C----(--CU 1801 CG-)----GG -GU-GGG-AG GUCGAGCUU- CUCCUC-CGC GAGGGGGG.. .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Mts.spTA2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Metallosphaera sp. str. TA2. ACCESSION No information KEYWORDS No information. SOURCE Metallosphaera sp. str. TA2. ORGANISM Metallosphaera sp. REFERENCE 1 AUTHORS Kurosawa,N. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D38776|g938027 isolate_name= TA2 BASE COUNT 194 a 236 c 293 g 136 t 1065 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CCC CGCGAGUGGU CGGGACGUUU AUUGGGC|UU AAAGCGCCCG UAGCCG|GCC 781 UGUAAAG|-- UCACCGUUU- AAAGACCCGG GC(UC-A)AC UCGGG-GAA- -CGGCGGUGA 841 UACUUACA-G GCUA-GGGGG CGGGAGAGGU CGGA|GGUAC UCCCGGAGUA GGG(GCGAAA 901 )UCCUCAGAU CCCGGGAGGA CCACCAGUGG C(GAAA)GCG U-CCGGCUAG AACGCGCCCG 961 ACGGUGCGGG GCGAAAGCCG GGGUAGCAAA UAGG(AUUAG AUAC)CCUAG UAGUCCCGGC 1021 UGUAAACGAU GCAGGCUA|G GUGUCGCGUA GGC-(U-UU- GU)--GCCUG CGCGG-UGCC 1081 GCAGG(AAAA )CUGGUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGGAACC -UGCGGCUCA AUUGG(AGUC 1201 AACG)CCUGG AA--UCUCAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CCGC--AGGA UGACGGCCAG GCUAACGA-C 1321 CUUGCC-AGA -CUCGCGGAG |AGGAGGUGC AUG|GCCGUC GCCA|GCUCG U|GUU(GUGA 1381 )AAUGUCCGG (UUAAGU)CC GGCAACGAGC GAGACCCCCA |CUUCUAG-U UGG-UAACC- 1441 UCUC------ (UCCG-)--- -GAGA-CGG| UCCACA-CUA GAAGGACUGC CGGU(GU-UA 1501 A)ACCGGAGG AAGGAGGGGG CCACGGCAGG UCAGCAUGCC CCGAAACUUC CGGGCCGCAC 1561 GCGGGUUACA AUGGCAGGGA CAGCGGGA-U CU-GACCCC( GAGA)GGGGA AGGCAAUCCC 1621 ACAAACCCUG CCUCAGUUGG GAUCGAGGGC (UGAAACUC) GCCCUCGUGA ACGAGGAAUC 1681 CCUAGUAACC GCGGG(UCAA CAA)CCCGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.2.2-CREN 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.2 CRENARCHAEOTA_GROUP_II. ACCESSION No information KEYWORDS No information. SOURCE 1.2.2 CRENARCHAEOTA_GROUP_II. ORGANISM 1.2.2 CRENARCHAEOTA_GROUP_II. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.pJP89 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25305 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 281 a 373 c 473 g 209 t 588 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGACCCC-AC 61 UGCUAUCGGG GUGGGACUAA GACAUGCUA- --GUUGUGCG ---------- ---CCUCCA( 121 AGCC-ACGG) UGGAGG---- -----|---C GCGGCGCACA GCUCAGUAAC ACGUGGCUAA 181 CCUGCCCUUG GGACGGGGAU AACCC--CG- G(-GAAA)CU GGGGCUAAUA CCCGAUA--G 241 GCGA--GGAC UCC-(UGGAA U--)-GGG-U CUUC-GCC-- GAA-AGGGCG CC--UGGA-- 301 (-CCACGC-- )--UCUA|GG CGCC-GCCC- --AAGGAUGG |GGCCGCGG| CCGAUCA-G- 361 GUAGUUGGUG AG(GUAACGG )CUCACCAA| ACCUA-UAAC CGGUACGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC G|GAGAUGGA CA(CUGAGA- CAAG)GGUCC 481 AGGCCC(UAC G)GGGCGCAG CAGUCGCG-A AACCUCCGCA AUACGC(GAA A)GCGUGACG 541 GG|GUCACCC CGAGUG-CC- ---------- (----)---- ---------G CC-CGCUG-A 601 GG--GUGGC| UUUUCCCCAG U--------- ------(GUA GCAA--)--- ---------- 661 ----GCUGGG GG-AAUAAGG GGAGGGCA-A GUCGG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCCG-|CUC CCCGAGUGGU GGGGACGCUU AUUGGGC|CU AAAGCAUCCG UAGCCG|GCU 781 GGGUAAG|-- UCCCCUGUU- AAAUCCAGCG AU(UU-A)AU CGCUG-GAC- -UGCGGGGGA 841 UACUGCCC-A GCUA-GGGGG CGGGAGAGGC CGGC|GGUAU UCCCGGGGUA GGG(GUGAAA 901 )UCCUAUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCU G-CCGGCUGG AACGCGCCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCGAA CCGG(AUUAG AUAC)CCCCG UAGUCCCGGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUGGCAC GGC-(U-AU- GA)--GCCGU GCCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCU -UGCGGUUUA AUUGG(AGUC 1201 AACG)CCGGG AA--CCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGGA UGAAGGCCAG AUUGAAGG-U 1321 CUUGCC-AGA -CAAGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GUUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGU)CA GGCAACGAUC GAGACCCGCG |CCCCCUG-U UGC-CAUCGG 1441 C--------C (UCUGC)--- ----G-CCG| GGCACA-CUG GGGGGACUGC CGCC(GA-UA 1501 A)GGCGGAGG AAGGAGCGGG CCACGGCAGG UCAGUAUGCC CCGAAUCCCC CGGGCCACAC 1561 GCGAGCUGCA AUGGCAGGGA CAAUGGGU-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 U-AAACCCUG CCGUAGUUGG GAUCGAGGGC (UGCAACCC) GCCCUCGUGA ACAUGGAAUC 1681 CCUAGUAAUC GCGCG(UCAC CAU)CGCGCG GUGAAUACGU CCCUGCUCCU .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.pJP33 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25300 Former RDP Sids: env.pJP41 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 267 a 392 c 486 g 187 t 592 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGACCCG-AC 61 CGCUAUCGGG GUGGGGCUAA GCCAUGCGA- --GUCGUGCN ---------- ----CCCCG( 121 -GGC--UGG) CGGGG----- -----|---C GCGGCGCACG GCUCAGUAAC ACGUGGCCAA 181 CCUACCCUCG GGACGGGGAU GACCC--CG- G(-GAAA)CU GGGGCUAAUA CCCGAUA--G 241 GCGA--UGGC UCC-(UGGAA U--)-GGG-C CAUC-GCU-- GAA-AGGGGC CU--GGGG-- 301 (CCACGCU-- )--CUCC|AG GUCC-GCCC- --GAGGAUGG |GGCUGCGG| CCCAUCA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-UAAC GGGUACGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC G|GAGAUGGG CC(CUGAGA- CAAG)GGCCC 481 AGGCNN(UAC G)GGNNGCAG CAGGCGCG-A AACCUCCGCU AUGCGG(GAA A)CCGCGACG 541 GG|GUCACCC CGAGUG-CC- ---------- (----)---- ---------G CC-CGAAG-A 601 GG--GCGGC| UUUUCCCCAG U--------- ------(GUA ACAA--)--- ---------- 661 ----GCUGGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CCC CGCGAGUGGU CGGGACGCUU AUUGGGC|UU AAAGCGUCCG UAGCCG|GUC 781 CAGCAAG|-- UCUCCCCUC- AAAUCCCACG GC(CC-A)AC CGUGG-GGC- -UGGGGGAGA 841 UACUGCUG-G GCUA-GGGGG CGGGAGAGGC CGAG|GGUAC UCCCGGGGUA GGG(GCGAAA 901 )UCCUAUAAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCCAG AACGCGCCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGAGCAAA GGGG(AUUAG AUAC)CCCCG UAGUCCCAGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUGGGCG GAC-(U-UC- GA)--GUCCG CCCAG-UGCC 1081 GCAGG(GAAA )CCAUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAUGC -UGCGGUUUA AUUGG(AGUC 1201 AACG)CCGGG AA--CCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGACGGCCAG GCUGACGA-C 1321 CUUGCC-AGA -CGCGCUGAG |AGGAGGUAC AUC|GCCGUC GCCA|GUUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)UC GGCAACGAAC GAGACCCCCA |CCCCCAG-U UGC-UACCGC 1441 GUCC------ (UGCG-)--- -GGGC-GCG| GGCACU-CUG GGGGGACUGC CGGC(GC-UG 1501 A)GCCGGAGG AAGGGGGGGG CCACGGUAGG UCAGCAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGGCAUGCA AUGGUGGGGA CAAUGGGU-U -CCGACCCC( GAAA)GGGGG AGGCAAUCCC 1621 AUAAACCCCA CCUCAGUUGG GAUUGAGGGC (UGCAACUC) GCCCUCACGA ACAUGGAAUC 1681 CCUAGUAACC GCGCG(UCAC CAU)CGCGCG GUGNAUACGU CCCUGCUCCU .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.pJP41 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25301 Former RDP Sids: env.pJPB41 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 294 a 357 c 449 g 228 t 596 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGACCCG-AC 61 CGCUAUCGGG GUGAGGCUAA GCCAUGCGA- --GUCU-GCG ---------- ---UCCUCA( 121 -GC----CA) UGAGGGG--- -----|--GC GCGGCGCACG GCUCAGUAAC AUGUGGUUAA 181 CCUACCCUCA GGACGGGGAU ACCCU--CG- G(-GAAA)CU GAGGCUAAUC CCCGAUA--G 241 AUGA--GGGA UCC-(UGGAA U--)-GGU-U CCUC-AUC-- CAA-AAGGCA CG--CAUA-- 301 (-UCAUGC-- )--UAUG|CG UGUC-GCCU- --GAGGAUGG |GACCGCAU| CCUAUCA-G- 361 GUAGUUGGUG GG(GUAACGG )CCCACCAA| GCCUA-UAAC GGGUACGGG| CCCU(GAGA) 421 GGGG------ ---------- ----GAGCCC G|GAGAUGGG UA(CUGAGA- CAAG)GACCC 481 AGGCCC(UAC G)GGGCGCAG CAGGCGCG-A AACCUCCGCA AUGCGC(GGA A)GCGCGACG 541 GG|GCCACCC CGAGUG-CC- ---------- (----)---- -------AUC CG--CUG--A 601 GG--GUGGC| UUUUCCCUAG U--------- ------(GUA GUAA--)--- ---------- 661 ----GCUAGG GG-AAUAAGC GGGGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAG-|CUC CGCGAGUGGU CGGGACGAUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 UAACAAG|-- UCUCUGGUU- AAAUCUCAAG GC(UU-A)AC CUUGA-GAU- -CGCUGGAGA 841 UACUGUUA-G GCUA-GGGGG CGGGANAGGU UGAG|GGUAC UUCGCGGGUA GGG(NCGAAA 901 )UCCUAUAAU CCGCGAAGGA CCACCAGUGG C(GAAG)GCG C-UCAACUGG AACGCGCCCG 961 ACGGUGAGGG ACGAAAGCUA GGGNNGCAAA GGGG(NUUAG AUAC)CCCCG UAGUCCUAGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUGGGUU GGC-(U-UC- GU)--GCCAA CCCAG-UGCC 1081 GCAGC(GAAG )GCGAUAAGC CCGC|C|GCC UGGGAAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGCGGUUUA AUUGG(AGUC 1201 AACG)CCGGG AA--UCUUAC CGGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAA GCUGACGA-C 1321 UUUGCC-AGA -CAGGCUGAG |AGGAGGUGC AUG|GCCGUC GCCA|GUUCG U|GCC(GUGA 1381 )GGUGUCCGG (UUAAGU)CC GGCAACGAAC GAGACCCCCA |CCCCUAUNU UGC-UAGGUC 1441 CUCU------ (CUAC-)--- GGAGGGGAC| CGCACACGUA GGGGGACCGC CAGU(GU-UA 1501 A)ACUGGAGG NNNNNGGGGG CUACGGCAGG UCAGCAUGCC CCGAAUCUCC CGGNCCACAC 1561 GCGGGCUGCA AUGGCGAGGA CAGCGGGU-U -CCGACCCC( GAGA)GGGGA AGGC-AUCCC 1621 UUAAACCUCG CCGUAGUUGG GAUUGAGGGC (UGUAACCC) GCCCUCAUGA ACAUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAU)CACGCG GUGNAUACGU CCCUGCUCCU .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.pJP6 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25306 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 94 a 127 c 166 g 62 t 1475 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGACCCG-AC 61 CGCUAUCGGG GUGGGGCUAA CCCAUGGAA- --GUCUAGGA ---------- ----GCCGG( 121 -GGG-ACGG) CCGGC----- -----|---U CCGGCGGACG GCUCAGUAAC ACGUGGCUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAUC CCCCAUA--G 241 GUGU--AGAC UUC-(UGGAA U--)-GGG-U CUAC-GCC-- GAA-AGGGCU AC--GGCA-- 301 (CCAUCCC-- )--UGCC|GU AGCC-GCCC- --GAGGAUGG |GGCUGCGG| CCUAUCA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCUA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|GAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGUGCAC CAGGGGCG-A AACUUCCGCA AUGCGG(GAA A)CCGUGACG 541 GA|GUCACCC CGAGUG-CC- ---------- (----)---- -------ACC CG--AUG--A 601 GG--GUGGC| UUUUGCCCGG U--------- ------(CUA AAAA--)--- ---------- 661 ----GCCGGG CG-AAUAAGC GGGGG..... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS Tmf.penden 1924 bp RNA RNA 02-JUL-1998 DEFINITION Thermofilum pendens str. Hvv3 DSM 2475. ACCESSION No information KEYWORDS No information. SOURCE Thermofilum pendens str. Hvv3 DSM 2475. ORGANISM Thermofilum pendens. REFERENCE 1 AUTHORS Kjems,J., Leffers,H., Oleson,T., Ingelore,H. and Garrett,R.A . TITLE Sequence, organisation and transcription of the ribosomal RNA operon and the downstream tRNA and protein genes in the archaebacterium Thermofilum pendens JOURNAL Syst. Appl. Microbiol. 13, 117-127 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 2475 Sequence information (bases 1 to 1924) Corresponding GenBank entry: X14835 isolate_name= Hvv3 BASE COUNT 307 a 434 c 543 g 216 t 424 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGGU(UGA )UCCU|-GCC GGACCCG-AC 61 CGCUAUCGGG GUGGGGCUAA CCCAUGGAA- --GUCUAGGA ---------- ----GCCGG( 121 -GGCUACGG) CCGGC----- -----|---U CCGGCGGACG GCUCAGUAGC ACGUGGCUAA 181 CCUACCCUCG GGAGGGGGAU AACCC--CG- G(-GAAA)CU GGGGAUAAAC CCCCAUA--G 241 GCGC--GGAC ACC-(UGGAA U--)-GGG-U CCGC-GCU-- GAA-AGGGCC AC--GGUA-- 301 (CCAUGCU-- )--UACC|GU GGCC-GCCC- --GAGGAUGG |GGCUGCGC| CCUAUCA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCGA-UAAC GGGUGGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|GAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGUGCAC CAGGGGCG-A AACUUCCGCA AUGCGG(GAA A)CCGUGACG 541 GA|GUCACCC CGAGUG-CC- ---------- (----)---- -------ACC CG--AAG--A 601 GG--GUGGC| UUUUGCCCGG U--------- ------(CUA AAAA--)--- ---------- 661 ----GCCGGG CG-AAUAAGC GGGGGGCA-A GCUUG-GUG( UCA--GCCGC CGCGGUAA)U 721 ACCAA-|CCC CGCGAGUGGU CGGGACGUUU AUUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 CGGUAAG|-- UCCCUCCUU- AAAGCCCACG GC(UC-A)AC CGUGG-GAG- --CGGAGGGA 841 UACUGCCG-G GCUA-GGGGG CGGGAGAGGC CGGG|GGUAC UCCUGGGGUA GGG(GCGAAA 901 )UCCUAUAAU CCCAGGAGGA CCACCAGUGG C(GAAG)GCG C-CCGGCUAG CACGCGCCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGAGCAAA GGGG(AUUAG AUAC)CCCCG UAGUCCCAGC 1021 UGUAAACGAU GCGGGCUA|G GUGUUGGACG GGC-(U-UC- GA)--GCCCG UCCAG-UGCC 1081 GUAGG(GAAG )CCGUUAAGC CCGC|C|GCC UGGGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCU -UGCGGUUUA AUUGG(AGUC 1201 AACG)CCGGA AA--CCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGCCAG GCUGACGA-C 1321 CUUGCC-AGA -CGAGCUGAG |AGGAGGUGC AUG|GCCGUC GCCG|GCUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGU)CA GGGAACGAGC GAGACCCCCG |CCCCUAG-U UGC-UACCCA 1441 GCCC------ (UUCG-)--- -GGGC-UGG| GGCACU-CUA GGGGGACUGC CGGC(GA-UA 1501 A)GCCGGAGG AAGGUGGGGG CUACGGCAGG UCAGUAUGCC CCGAAACCCC CGGGCUACAC 1561 GCGAGCUGCA AUGGCGGGGA CAGCGGGU-U -CCGACCCC( GAAA)GGGGG AGGUAAUCCC 1621 UUAAACCCCG CCUCAGUAGG AAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACGUGGAAUC 1681 CCUAGUAACC GCGUG(UCAC CAA)CGCGCG GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGCU CCACCCGAGG GAGGCCU-AG GUGA-G-GCC UC-CUGC--C -----(-GAC 1801 GA-)-----G -GU-GGG-AG GUCGAACCU- GGGCCU-CCC AAGGGGGGAG AAGUCGUAAC 1861 AAGGUGGCCG UAGG(GGAA) CCUGCGGCCG GAUCACCUCC ~~~~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.pJP81 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25304 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 97 a 129 c 162 g 60 t 1476 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGACCCC-AC 61 UGCUAUCGGG GUGGGACUAA GCCAUGCAA- --GUCGAAGG ---------- ---UCCCCG( 121 -GC----UC) CGGGGG---- -----|---C CUGGCAGACG GCUCAGUAAC ACGUGGCCAA 181 CCUACCCUCG NGAGGGGGAU AACCC--CN- N(-NAAA)CU GGGGUUAAAC CCCCAUA--G 241 GCGG--CGGG CUC-(UGGAA G--)-GAC-C CGCC-GCU-- GAA-AGUGGU GU--ACGGG- 301 (--GAUGC-- )-UCCGU|AC ACCA-GCCC- --GAGGAUGG |GGCUGCGG| CCUAUCA-G- 361 GUAGUUGGCG GG(GUAACGG )CCCGCCAA| GCCUA-UAAC GGGUAGGGG| CCGU(GAGA) 421 GCGG------ ---------- ----GAGCCC C|GAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGUGCAC CAGGNGCG-A AACUUCCGCA AUGCGG(GAA A)CCGUGACG 541 GA|GUCACCC CGAGUG-CC- ---------- (----)---- -------ACC CG--AUG--A 601 GG--GUGGC| UUUUGCCCGG U--------- ------(CUA AAAA--)--- ---------- 661 ----GCCGGG CG-AAUAAGC AGGGGGCA-A G........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.2.3-PLAN 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.3 PLANKTONIC. ACCESSION No information KEYWORDS No information. SOURCE 1.2.3 PLANKTONIC. ORGANISM 1.2.3 PLANKTONIC. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS 1.2.3.1-EN 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.3.1 ENV.JM8_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.3.1 ENV.JM8_GROUP. ORGANISM 1.2.3.1 ENV.JM8_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.JM8 1924 bp RNA RNA 02-JUL-1998 DEFINITION deep-sea holothurian. ACCESSION No information KEYWORDS No information. SOURCE deep-sea holothurian. ORGANISM deep-sea holothurian. REFERENCE 1 AUTHORS McInerney,J.O., Wilkinson,M., Patching,J.W., Embley,T.M. and Powell,R. TITLE Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder JOURNAL Appl. Environ. Microbiol. 61, 1646-1648 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L24201|g438426 library_source= deep-sea holothurian (sea cucumber) midgut archaeobacterium DNA BASE COUNT 210 a 189 c 244 g 165 t 1116 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... ......C|CU AAAGCAUCCG UAGCCG|GAU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UC-A)AC GUACA-GGC- -UGCCGGGAA 841 UACUGCAG-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGGAGGAA GUG(GUAAAA 901 )UGCUUUGAU CUUUCGAUGA CCGCCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACUAU GCAAACUC|A GUGAUGCAUU GGC-(U-UG- UG)--GCCAA UCGAG-UGUU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGCG-UUCA AUUGG(AGUC 1201 AACG)CCAGA AA--UCUUAC CCGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGAA UGAAGGUCAA GCUGAAGA-C 1321 UUUACC-AGA -CAAGCUGAG |AGGUGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GAUGUCCUG (UUAAGU)CA GGUAACGAGC GAGAUCCCUG |CCUCUAG-U UGC------- 1441 -------CAC (CAUUA)CU- ---------| -----A-UUA GCGGGACCGC CGCA(GU-UA 1501 A)UGCGGAGG AGGA-AGGGG CCACGGCAGG UCAGUAUGCC CCGAAACUCU GGGGCCACAC 1561 GCGKGCUGCA AUGGUAAUGA CAACGGGU-C -CCGAAUCC( GAAA)GGAAG AGGUAAUCCU 1621 U-AAACAUUA CCACAGUUAU GACUGAGGGC (UGCAACUC) GCCCUCACGA AUAUGGAAUC 1681 CCUAGUAACU GCGUG(UCAU UAU)CGCGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.JM7 1924 bp RNA RNA 02-JUL-1998 DEFINITION deep-sea holothurian. ACCESSION No information KEYWORDS No information. SOURCE deep-sea holothurian. ORGANISM deep-sea holothurian. REFERENCE 1 AUTHORS McInerney,J.O., Wilkinson,M., Patching,J.W., Embley,T.M. and Powell,R. TITLE Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder JOURNAL Appl. Environ. Microbiol. 61, 1646-1648 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L24200|g438425 library_source= deep-sea holothurian (sea cucumber) midgut archaeobacterium DNA BASE COUNT 207 a 190 c 245 g 165 t 1117 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... ......C|CU AAAGCAUCCG UAGCCG|GCU 781 CAGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UC-A)AC GUACA-GGC- -UGCCGGGAA 841 UACUGCAG-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGGAGGAA GUG(GUAAAA 901 )UGCUUUGAU CCUUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACUAU GCAAACUC|A GUGAUGCAUU GGC-(U-UG- UG)--GCCAA UCGAG-UGUU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCANNNG GGGUGAAGCC -UGCGGUUCA AUUGG(AGUC 1201 AACG)CCAGA AA--UCUUAC CCGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGC CAGC--AGAA UGAAGGUCAA GCUGAAGA-C 1321 UUUACC-AGA -CAAGCUGAG |AGGUGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GAUGUCCUG (UUAAGU)CA GGUAACGAGC GAGAUCCCUG |CCUCUAG-U UGC------- 1441 -------CAC (CAUUA)CU- ---------| -----A-UUA GCGGGACCGC CGCA(GU-UA 1501 A)UGCGGAGG AGGA-AGGGG CCACGGCAGG UCAGUAUGCC CCGAAACUCU GGGGCCACAC 1561 GCGGGCUGCA AUGGUAACGA CAAUGUGU-U -CCGAAUCC( GAAA)GGAAG AGGUAAUCCU 1621 C-AAACGUUA CCACAGUUAU GACUGAGGGC (UGCAACUC) GCCCUCACGA AUAUGGAAUC 1681 CCUAGUAACU GCGUG(UCAU UAU)CGCGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.JM1 1924 bp RNA RNA 02-JUL-1998 DEFINITION deep-sea holothurian. ACCESSION No information KEYWORDS No information. SOURCE deep-sea holothurian. ORGANISM deep-sea holothurian. REFERENCE 1 AUTHORS McInerney,J.O., Wilkinson,M., Patching,J.W., Embley,T.M. and Powell,R. TITLE Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder JOURNAL Appl. Environ. Microbiol. 61, 1646-1648 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L24195|g438420 library_source= deep-sea holothurian (sea cucumber) midgut archaeobacterium DNA BASE COUNT 104 a 83 c 130 g 83 t 1524 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... ......C|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UC-A)AC GUACA-GGC- -UGCUGGGAA 841 UACUGCAG-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGGAGGAA GUG(GUAAAA 901 )UGCUUUGAC CUCUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACUAU GCAAACUC|A GGGAUGCAUU GGC-(U-UG- UG)--GCCAA UCGAG-UGUU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGC-GUUCA AUUGG(A... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.JM2 1924 bp RNA RNA 02-JUL-1998 DEFINITION deep-sea holothurian. ACCESSION No information KEYWORDS No information. SOURCE deep-sea holothurian. ORGANISM deep-sea holothurian. REFERENCE 1 AUTHORS McInerney,J.O., Wilkinson,M., Patching,J.W., Embley,T.M. and Powell,R. TITLE Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder JOURNAL Appl. Environ. Microbiol. 61, 1646-1648 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L24196|g438421 library_source= deep-sea holothurian (sea cucumber) midgut archaeobacterium DNA BASE COUNT 208 a 190 c 247 g 164 t 1115 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... ......C|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UC-A)AC GUACA-GGC- -UGCUGGGAA 841 UACUGCAG-A GCUA-GGGAG U-GGAGAGGU AGAC|GGUAC UCGGGAGGAA GUG(GUAAAA 901 )UGCUUUGAU CUCUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACGAU GCAGACUC|G GUGAUGCCCU GGC-(U-UG- UG)--GCCAG UGCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGC-GUUCA AUUGG(AGUC 1201 AACG)CCAGA AA--UCUUAC CCGAGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGAA UGAAGGUCAA GCUGGAGA-C 1321 UUUACC-AGA -CAAGCUGAG |AAGUGGAGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GAUGUCCUG (UUAAGU)CA GGUAACGAGC GAGAUCCCUG |CCUCUAG-U UGC------- 1441 -------CAC (CAUUA)CU- ---------| -----A-UUA GAGGGACCGC CACA(GU-UA 1501 A)UGUGGAGG AGGA-AGGGG CCACGGCAGG UCAGUAUGCC CUGAAACCUU GGGGCCACAC 1561 GCGGGCUGCA AUGGUAGUGA CAAUGAGU-U UCCGAAUCC( GAAA)GGAGG AGGCAAUCUU 1621 C-AAACGCUA CCACAGUUAU GAUUGAGGGC (UGCAACUC) GCCCUCAUGA AUAUGGAAUC 1681 CCUAGUAACC GCGUG(UCAU UAC)CGCGCA GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.JM6 1924 bp RNA RNA 02-JUL-1998 DEFINITION deep-sea holothurian. ACCESSION No information KEYWORDS No information. SOURCE deep-sea holothurian. ORGANISM deep-sea holothurian. REFERENCE 1 AUTHORS McInerney,J.O., Wilkinson,M., Patching,J.W., Embley,T.M. and Powell,R. TITLE Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder JOURNAL Appl. Environ. Microbiol. 61, 1646-1648 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L24199|g438424 library_source= deep-sea holothurian (sea cucumber) midgut archaeobacterium DNA BASE COUNT 106 a 81 c 127 g 85 t 1525 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... ......C|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UC-A)AC GUACA-GGC- -UGCUGGAAA 841 UACUGCAG-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGGAGGAA GUG(GUAAAA 901 )UGCUUUGAU CUCUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUC-G 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACUAU GCAAACUC|A GUGAUGCAUU GGC-(U-UG- AU)--GCCAA UGCAG-UGUU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGC-GUUCA AUUGG(A... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.JM4 1924 bp RNA RNA 02-JUL-1998 DEFINITION deep-sea holothurian. ACCESSION No information KEYWORDS No information. SOURCE deep-sea holothurian. ORGANISM deep-sea holothurian. REFERENCE 1 AUTHORS McInerney,J.O., Wilkinson,M., Patching,J.W., Embley,T.M. and Powell,R. TITLE Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder JOURNAL Appl. Environ. Microbiol. 61, 1646-1648 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L24198|g438423 library_source= deep-sea holothurian (sea cucumber) midgut archaeobacterium DNA BASE COUNT 211 a 187 c 242 g 169 t 1115 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... ......C|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UU-A)AC GUACA-GGC- -CGCCGGAAA 841 UACUGCAG-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGGAGGAA GUG(GUAAAA 901 )UGCUUUGAU CUCUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACUAU GCAAACUC|A GUGAUGCAUU GGC-(U-UG- UG)--GCCAA UGCAG-UGUU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGUGGGGGA GCACCACAAG GGGUGAAGCC -UGCG-UUCA AUUGG(AGUC 1201 AACG)CCAGA AA--UCUUAC CCGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGAA UGAAGGUCAA GCUGAAGA-C 1321 UUUACC-AGA -CAAGCUGAG |AGGUGGUGC AUG|GCCGCC GCCA|GCUCG U|GCC(GUGA 1381 )GAUGUCCUG (UUAAGU)CA GGUAACGAGC GAGAUCCCUG |CCUCUAG-U UGC------- 1441 -------CAC (CAUUA)CU- ---------| -----A-UUA GCGGGACCGC CACA(GU-UA 1501 A)UGUGGAGG -AGUAAGGGG CCACGACAGG UCAGUAUGCC CCGAAACUCU GGGGCCACAC 1561 GCGGGCUGCA AUGGUAGUGA CAAUGAGU-U -CCGAAACC( GAAA)GGUGG AGGUAAUCUU 1621 -CAAACGCUA UCACAGUUAU GAUUGAGGGC (UGCAACUC) GCCCUCAUGA AUAUGGAAUC 1681 CCUAGUAACU GCGUG(UCAU UAC)CGCGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.JM3 1924 bp RNA RNA 02-JUL-1998 DEFINITION deep-sea holothurian. ACCESSION No information KEYWORDS No information. SOURCE deep-sea holothurian. ORGANISM deep-sea holothurian. REFERENCE 1 AUTHORS McInerney,J.O., Wilkinson,M., Patching,J.W., Embley,T.M. and Powell,R. TITLE Recovery and phylogenetic analysis of novel archaeal rRNA sequences from a deep-sea deposit feeder JOURNAL Appl. Environ. Microbiol. 61, 1646-1648 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L24197|g438422 library_source= deep-sea holothurian (sea cucumber) midgut archaeobacterium DNA BASE COUNT 208 a 188 c 244 g 168 t 1116 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... ......C|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UC-A)AC GUACA-GGC- -UGCCGGGAA 841 UACUGCAG-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGGAGGAA GUG(GUAAAA 901 )UGCUUUGAU CUCUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUCCG 961 ACGGUGAGGG AUGAACGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACUAU GCAAACUC|A GUGAUGCAUU GGC-(U-UG- UG)--GCCAA UGCAG-UGUU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGUGGGGGA GCACCACAAG GGGUGAAGCC -UGCGGUUCA AUUGG(AGUC 1201 AACN)CCAGA AA--UCUUAC CCGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGAA UGAAGGUCAA GCUGAAGA-C 1321 UUUACC-AGA -CAAGCUGAG |AGGUGGUGC AUG|GCCGCC GCCA|GCUCG U|GCC(GUGA 1381 )GAUGUCCUG (UUAAGU)CA GGUAACGAGC GAGAUCCCUN |CCUCUAG-U UGC------- 1441 -------CAC (CAUUA)CU- ---------| -----A-UUA GCGGGACCGC CGCA(GU-UA 1501 A)UGCGGAGG AGGA-AGGGG CCACGGCAGG UCAGUAUGCC CCGAAACUCU GGGGCCACAC 1561 GCGGGCUGCA AUGGUAAUGA CAAUGAGU-U -CCGAAACC( GAAA)GGUGG AGGUAAUCUU 1621 C-AAACGCUA UCACAGUUAU GAUUGAGGGC (UGCAACUC) GCCCUCAUGA AUAUGGAAUC 1681 CCUAGUAACU GCGUG(UCAU UAC)CGCGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.ANT12 1924 bp RNA RNA 02-JUL-1998 DEFINITION clone ANTARCTIC12.. ACCESSION No information KEYWORDS No information. SOURCE clone ANTARCTIC12. ORGANISM clone ANTARCTIC12. REFERENCE 1 AUTHORS DeLong,E.F., Wu,K.Y., Prezelin,B.B. and Jovine,R.V.M. TITLE High abundance of Archaea in Antarctic marine picoplankton JOURNAL Nature 371, 695-697 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U11043|g551497 BASE COUNT 246 a 191 c 273 g 199 t 1015 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U UCCGGU(UGA )UCCU|-GCC GGACCUG-AC 61 UGCUAUCGGA UUGAUACUAA GCCAUGCGA- --GUCA-UU- ---------- ------GUA( 121 -GC----AA) UAC------- -----|---- AAGGCAUACG GCUCAGUAAC GCGUAGUCAA 181 CCUAACCUAU GGACGGGAAU AACCU--CG- G(-GAAA)CU GAGAAUAAUG CCCGAUA--G 241 AACA--CUAU ACC-(UGGAA U--)-GGU-U UGUG-UUC-- CAA-AUGA-- ---------- 301 (--UUUA--- )------|-- --UC-GCCA- --UAGGAUGG |GACUGCGG| CCUAUCA-G- 361 UUUGUUGGUG AG(GUAAUGG )CCCACCAA| GACUA-UUAC AGGUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----UAGCCC G|GAGAUGGG UA(CUGAGA- CACG)GACCC 481 AGGCCU(-AU G)GGGCGCAG CAGGCGAG-A AAACUUUGCA AUGUGC(GAA A)GCACGACA 541 AG|GUUAAUC CGAGUG-AU- ---------- (----)---- -------UUG UG--CUA--A 601 AC--GAAUC| UUUUGUUAGU C--------- ------(CUA GAAA--)--- ---------- 661 ----CACUAA CG-AAUAAGG GGUGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAUGAUU AUUGGGC|CU AAAGCAU-CG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UU-A)AC GUACA-GGC- -UGCCGGGAA 841 UACUGCAA-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GUG(GUAAAA 901 )UGCUUUGAU CUAUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACUAU GCAAACUC|A GUGAUGCAUU GGC-(U-UG- UG)--GCCAA UGCAG-UGCU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAG-C -UGCGGUUCA AUUGG(AGUC 1201 AACG)CCGG. ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.SBAR5 1924 bp RNA RNA 02-JUL-1998 DEFINITION Santa Barbara. ACCESSION No information KEYWORDS No information. SOURCE Santa Barbara. ORGANISM Santa Barbara. REFERENCE 1 AUTHORS DeLong,E.F. TITLE Archaea in coastal marine environments JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 5685-5689 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M88075 library_source= Santa Barbara Channel bacterioplankton DNA NB: method:PCR IDENT: psychroph. marine archae; distant rel. of Crenarchaeota BASE COUNT 242 a 187 c 272 g 200 t 1023 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U UCCGGU(UGA )UCCU|-GCC GGACCUG-AC 61 UGCUAUCGGA UUGAUACUAA GCCAUGCGA- --GUCAUGUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AAGGCAUACG GCUCAGUAAC GCGUAGUCAA 181 CCUAACCUAU GGACGGGAAU AACCU--CG- G(-GAAA)CU GAGAAUAAUG CCCGAUA--G 241 AACA--UUAU GCC-(UGGAA U--)-GGU-U UAUG-UUC-- CAA-AUGA-- ---------- 301 (--UUUA--- )------|-- --UC-GGCC- --GUAGAUGG |GACUGCGG| CCUAUCA-G- 361 UUUGUUGGUG AG(GUAAUGG )CCCACCAA| GACUA-UUAC AGGUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----UAGCCC G|GAGAUGGG UA(CUGAGA- CACG)GACCC 481 AGGGCC(UAU G)GGGCGCAG CAGGCGAG-A AAACUUUGCA AUGUGC(GAA A)GCACGACA 541 AG|GUUAAUC CGAGUG-AU- ---------- (----)---- -------UUG UG--CUA--A 601 AC--GAAUC| UUUUGUUAGU C--------- ------(CUA GAAA--)--- ---------- 661 ----CACUAA CG-AAUAAGG GGUGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAUGAUU AUUGGGC|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UU-A)AC GUACA-GGC- -UGCCGGGAA 841 UACUGCAG-A GCUC-GGGAG UGGGAGAAGU AGAC|GGUAC UCGGUAGGAA GUG(GUAAAA 901 )UGCUUUGAU CUAUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACUAG AACACGUCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACUAU GCAAACUC|A GUGAUGCAUU GGC-(U-UG- UG)--GCCAA UGCAG-UGCU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAG-C -UGCGGUUCA AUUGG(A... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.SBAR12 1924 bp RNA RNA 02-JUL-1998 DEFINITION Santa Barbara. ACCESSION No information KEYWORDS No information. SOURCE Santa Barbara. ORGANISM Santa Barbara. REFERENCE 1 AUTHORS DeLong,E.F. TITLE Archaea in coastal marine environments JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 5685-5689 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M88076 library_source= Santa Barbara Channel bacterioplankton DNA NB: IDENT: psychroph. marine archae; distant rel. of Crenarchaeota BASE COUNT 245 a 191 c 273 g 200 t 1015 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~UU UCCGGU(UGA )UCCC|-GCC GGACCUG-AC 61 UGCUAUCGGA UUGAUACUAA GCCAUGCGA- --GUCA-UUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AAGGCAUACG GCUCAGUAAC GCGUAGUCAA 181 CCUAACCUAU GGACGGGAAU AACCU--CG- G(-GAAA)CU GAGGAUAAUG CCCGAUA--G 241 AACA--UUAU ACC-(UGGAA U--)-GGU-U UAUG-UUC-- CAA-AUGA-- ---------- 301 (--UUUA--- )------|-- --UC-G-CC- --AUAGAUGG |GACUGCGG| CCUAUCA-G- 361 UUUGUUGGUG AG(GUAAUGG )CCCACCAA| GACUA-UUAC AGGUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----UAGCCC G|GAGAUGGG UA(CUGAGA- CACG)GACCC 481 AGGGCC(UAU G)GGGCGCAG -AGGCGAG-A AAACUUUGCA AUGUGC(GAA A)GCACGACA 541 AG|GUUAAUC UGAGUG-AU- ---------- (----)---- -------UUC UG--CUA--A 601 AG--AGAUC| UUUUGUUAGU C--------- ------(CUA GAAA--)--- ---------- 661 ----CACUAA CG-AAUAAGG GGUGGGCA-A GUCUG-GUG( UCA--GCCGC CGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAUGAUU AUUGGGC|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UC-A)AC GUACA-GGC- -UGCCGGGNA 841 UACUGCAG-A ACUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GUG(GUAAAA 901 )UGCUUUGAU CUAUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGUAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACUAU GCAAACUC|A GUGAUGCAUU GGC-(U-UG- UG)--GCCAA UGCAG-UGCU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGGGAAG-C -UGCGGUUCA AUUGG(ACUC 1201 AACG)CCGG. ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.WHARQ 1924 bp RNA RNA 02-JUL-1998 DEFINITION Woods Hole. ACCESSION No information KEYWORDS No information. SOURCE Woods Hole. ORGANISM Woods Hole. REFERENCE 1 AUTHORS DeLong,E.F. TITLE Archaea in coastal marine environments JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 5685-5689 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: M88079 library_source= Woods Hole bacterioplankton DNA NB: IDENT: psychroph. marine archae; distant rel. of Crenarchaeota BASE COUNT 243 a 187 c 269 g 201 t 1024 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~UU UCCGGU(UGA )UCCU|-GCC GGACCUG-AC 61 UGCUAUCGGA UUGAUACUAA GCCAUGCGA- --GUCA-UUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AAGGCAGACG GCUCAGUAAC GCGUAGUCAA 181 CCUAA-CUAU GGACGGGAAU AAC-U--CG- G(-GAAA)CU GAGAAUAAUG CCCGAUA--G 241 AACA--CUAU ACC-(UGGAA U--)-GGU-U UGUG-UUC-- CAA-AUGA-- ---------- 301 (--UUUA--- )------|-- --UC-GCCUG --UAGGAUGG |GACUGCGG| CCUAUCA-G- 361 UUUGUUGGUG AG(GUAAUGG )CCCACCAA| GACUA-UUAC AGGUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----UAGCCC G|GAGAUGGG UA(CUGAGA- CACG)GACCC 481 AGG-CC(UAU G)GGGCGCAG CAGGCGNN-A AAACUUUGCA AUGUGC(GAA A)GCACGACA 541 AG|GUUAAUC CGAGUG-AU- ---------- (----)---- -------UUG UG--CUA--A 601 AC--GAAUC| UUUUGUUAGU C--------- ------(CUA GAAA--)--- ---------- 661 ----CACUAA CG-AAUAAGG GGUGGGCA-A GUCUG-GUG( UCA--GC-NN NGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAUGAUU AUUGGGC|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUGUAC GC(UU-A)AC GUACA-GGC- -UGCCGGGAA 841 UACUGCAG-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUUGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUCCG 961 ACGGUGAGGG AUGAAAKCUK GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCACG 1021 UGUAAACUAU GCA-ACUC|A GUGAUGCAUU GAC-(U-UG- UG)--GUCAA UGCAG-UGCU 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAG-C -UGCGGUUCA AUUGG(ACUC 1201 AACG)CCG.. ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.2.3.2-EN 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.3.2 ENV.FIE16_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.3.2 ENV.FIE16_GROUP. ORGANISM 1.2.3.2 ENV.FIE16_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.FIE16 1924 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: D26266|g498384 library_source= unidentified soil bacterium from soybean field BASE COUNT 70 a 69 c 81 g 67 t 1637 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ......|... .......... .......... .......|.. .......... ......|... 781 .......|-- .......... .......... ..(..-.).. .......... .......... 841 .......... .......... .......... ....|..... .......... ...(...... 901 )......... .......... .......... .(....)... .......... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......CUG |CUUCUAG-U UGC-UACUUC 1441 UAUUC----- (UUCG-)--- GAGUAGAGG| GGCUAA-UUA GAAGGACUGC CGCC(GC-UA 1501 A)GGGGAGUG AAGGAGGGGG UUACGGCAGG UCAGUAUGCC CCGAAACCCU CGGGCCACAC 1561 GCGGGCUGCA AUGGUAAGUA CAAUAGGU-C -UCGAUUCC( GAAA)GGAGG AGGCAAUCCC 1621 GUAAAACUUA CCACAGUUAU GAUUGAGGGC (UGAAACUC) GUCCUCAUGA AUAUGGAAUC 1681 CCUAGUAAUC GCGUG(UCAU CAU)CGCGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.2.3.3-EN 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.3.3 ENV.NH49-8_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 1.2.3.3 ENV.NH49-8_GROUP. ORGANISM 1.2.3.3 ENV.NH49-8_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.NH49-8 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Novel major archaebacterial group from marine plankton JOURNAL Nature 356, 148-149 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z11572 (bases 1 to 862) library_source= Pacific Ocean station 49 500m depth bacterioplankton DNA NB: IDENT: psychroph. marine archae; distant rel. of Crenarchaeota BASE COUNT 54 a 38 c 58 g 50 t 1724 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CAC CUCAAGUGGU CAGGAGGAUU AUUGGGC|CU AAAGCAUCCG UAGCCU|GUU 781 CUAUAAG|-- UUUGCGGUU- AAAUCUAUAC GC(UC-A)AC GUAUA-GGC- -UGCCGUAAA 841 UACUGUAG-A ACUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGAUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUUGAUGA CCACCUGUGG C(GAAG)GCG G-UC...... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.PVA2 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U46678|g1208627 library_source= Pele's Vents Archaea DNA BASE COUNT 252 a 187 c 272 g 203 t 1010 others ORIGIN 1 .......... .......... .........U UCCGGU(UGA )UCCU|-GCC GGACCUG-AC 61 UGCUAUCGGA UUGAUACUAA GCCAUGCGA- --GUCU-UU- ---------- ------GUA( 121 -GU----AA) UAC------- -----|---- AAGGCAGACG GCUCAGUAAC ACGUAGUCAA 181 CCUACCCUAU GGACAAGAAU AAUCU--CG- G(-GAAA)CU GGGCAUAAUU CUUGAUA--G 241 AUCA--UAAU GCC-(UGGAA U--)-GGU-U UAUG-GUU-- AAA-AUGA-- ---------- 301 (--UUCG--- )------|-- --UC-GCCA- --UAGGAUGG |GACUGCGG| CCUAUCA-G- 361 CUUGUUGGUG AG(GUAAUGG )CCCACCAA| GGCGA-UUAC AGGUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----AAGCCC G|GAGAUGGG UA(CUGAGA- CACG)GACCC 481 AGGCCC(UAU G)GGGCGCAG CAGGCGAG-A AAACUUUGCA AUGUGC(GAA A)GCACGACA 541 AG|GUUAAUC CGAGUG-AU- ---------- (----)---- -------UUC UG--CUA--A 601 AG--AAAUC| UUUUGCCAGU U--------- ------(AUA AAAC--)--- ---------- 661 ----CACUGG UG-AAUAAGG GGUGGGCAAG UUCUG-GUG( UCA--GCCGC CGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAGGAUU AUUGGGC|CU AAAGCAUCCG UAGCCU|GUU 781 CUAUAAG|-- UUUGCGGUU- AAAUCUAUAC GC(UC-A)AC GUAUA-GGC- -UGCCGUAAA 841 UACUGUAG-A ACUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGAUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUUGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUUCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACGAU GCAGACUC|G AUGAUGCAAU GGC-(A-UA- GA)--GCUAU UGCAG-UAUC 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGCGGUUCA AUUGG(AGUC 1201 AACG)CCGGG ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.PVA3 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U46679|g1208628 library_source= Pele's Vents Archaea DNA BASE COUNT 252 a 187 c 273 g 202 t 1010 others ORIGIN 1 .......... .......... .........U UCCGGU(UGA )UCCU|-GCC GGACCUG-AC 61 UGCUAUCGGA UUGAUACUAA GCCAUGCGA- --GUCU-UUG ---------- -------UA( 121 -GU----AA) UA-------- -----|---C AAGGCAGACG GCUCAGUAAC ACGUAGUCAA 181 CCUACCCUAU GGACAAGAAU AAUCU--CG- G(-GAAA)CU GGGCAUAAUU CUUGAUA--G 241 AUCA--UAAU GCC-(UGGAA U--)-GGU-U UAUG-GUU-- AAA-AUGA-- ---------- 301 (--UUCG--- )------|-- --UC-GCCA- --UAGGAUGG |GACUGCGG| CCUAUCA-G- 361 CUUGUUGGUG AG(GUAAUGG )CCCACCAA| GGCGA-UUAC AGGUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----AGGCCC G|GAGAUGGG UA(CUGAGA- CAAG)GACCC 481 AGGCCC(UAU G)GGGCGCAG CAGGCGAG-A AAACUUUGCA AUGUGC(GAA A)GCACGACA 541 AG|GUUAGUC CGAGUG-AU- ---------- (----)---- -------UUC UG--CUA--A 601 AG--AAAUC| UUUUGCAAGU C--------- ------(AUA AAAC--)--- ---------- 661 ----CACUAG UG-AAUAAGG GGUGGGCAAG UUCUG-GUG( UCA--GCCGC CGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAGGAUU AUUGGGC|CU AAAGCAUCCG UAGCCU|GUU 781 CUAUAAG|-- UUUGCGGUU- AAAUCUAUAC GC(UC-A)AC GUAUA-GGC- -UGCCGUAAA 841 UACUGUAG-A ACUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGAUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUUGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUUCG 961 ACGGUGAGGG AUGAAGGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACGAU GCAGACUC|G AUGAUGCAAU GGC-(A-UA- GA)--GCUAU UGCAG-UAUC 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGCGGUUCA AUUGG(ACUC 1201 AACG)CCGGG ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.NH4914 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Novel major archaebacterial group from marine plankton JOURNAL Nature 356, 148-149 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z11569 library_source= Pacific Ocean station 49 500m depth bacterioplankton DNA NB: IDENT: psychroph. marine archae; distant rel. of Crenarchaeota BASE COUNT 53 a 39 c 59 g 49 t 1724 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CAC CUCAAGUGGU CAGGAGGAUU AUUGGGC|CU AAAGCAUCCG UAGCCU|GUU 781 CUAUAAG|-- UUUGCGGUU- AAAUCUAUAC GC(UC-A)AC GUAUA-GGC- -UGCCGUAAA 841 UACUGUAG-A ACUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUCGAUGA CCACCUGUGG C(GAAG)GCG G-UC...... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.NH49-9 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrmann,J.A., McCallum,K. and Davis,A.A. TITLE Novel major archaebacterial group from marine plankton JOURNAL Nature 356, 148-149 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z11573 library_source= Pacific Ocean station 49 500m depth bacterioplankton DNA NB: IDENT: psychroph. marine archae; distant rel. of Crenarchaeota BASE COUNT 233 a 195 c 253 g 177 t 1066 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CAC CUCAAGUGGU CAGGAGGAUU AUUGGGC|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUAUGU GC(UC-A)AC GCAUA-GGC- -UGCCGAAAA 841 UACUGCAU-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUUCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACGAU GCAGACUC|G AUAAUGCAUU GGC-(A-UA- UA)--GCCAG UGCAG-UGUC 1081 GCAGG(GAAG )CCGUUAAGU CUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCNNGGAA KCACCACAAG GGGUAAAGCC -UGCGAUUCA AUUGG(AGUC 1201 AACK)CCAGA AA--UCUAAC CCGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGAA UGAAGGUCAA GCUGAAGA-C 1321 UUUACC-AGA -CAAGCUGAG |AGGUGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GAUGUCCUG (UUAAGU)CA GGUAACGAGC GAGAUCCUCG |CCACUAG-U UGC-UAUCAU 1441 UAUUC----- (UCAG-)--- GAAUAGUGG| GGCGAA-UUA GUGGGACUGC CGUU(GU-UA 1501 A)AACGGAGG AAGGAGGGGG CUACGGCAGG UCAGUAUGCC CCGAAACUCU GGGGCCACAC 1561 GCGGGCUGCA AUGGUAGCGA CAAUGAGC-U -CCAAACUC( GAAA)GAGAG UGGCAAUCUC 1621 U-AAACGCUA CCACAGUUAU GACUGAGGGC (UGUAACUC) GCCCUCACGA AUAUGGAAUC 1681 CCUAGUAACC GCGUG(UCAU UAC)CGCGCG GUGAAUACGU CCCUGCUCCU U......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.NH25-1 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Novel major archaebacterial group from marine plankton JOURNAL Nature 356, 148-149 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z11570 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA NB: IDENT: psychroph. marine archae; distant rel. of Crenarchaeota BASE COUNT 50 a 43 c 62 g 45 t 1724 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CAC CUCAAGUGGU CAGGAGGAUU AUUGGGC|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCCAUGU GC(UC-A)AC GCAUG-GGC- -UGCCGAAAA 841 UACCGCAU-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUCGAUGA CCACCUGUGG C(GAAG)GCG G-UC...... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.NH49-4 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Novel major archaebacterial group from marine plankton JOURNAL Nature 356, 148-149 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z11571 library_source= Pacific Ocean station 49 500m depth bacterioplankton DNA NB: IDENT: psychroph. marine archae; distant rel. of Crenarchaeota BASE COUNT 50 a 42 c 62 g 46 t 1724 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CAC CUCAAGUGGU CAGGAGGAUU AUUGGGC|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCCAUGU GC(UC-A)AC GCAUG-GGC- -UGCCGAAAA 841 UACUGCAU-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUCGAUGA CCACCUGUGG C(GAAG)GCG G-UC...... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.PVA4 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U46680|g1208629 library_source= Pele's Vents Archaea DNA BASE COUNT 247 a 193 c 275 g 200 t 1009 others ORIGIN 1 .......... .......... .........U UCCGGU(UGA )UCCU|-GCC GGACCUG-AC 61 UGCUAUCGGA UUGAUACUAA GCCAUGCGA- --GUCU-UU- ---------- ------GUA( 121 -GU----AA) UAC------- -----|---- AAGGCAGACG GCUCAGUAAC ACGUAGUCAA 181 CCUACCCUAU GGACGAGAAU AAUCU--CG- G(-GAAA)CU GAGCAUAAUU CUCGAUA--G 241 AUCA--UAAU GCC-(UGGAA U--)-GGU-U UAUG-GUU-- AAA-AUGA-- ---------- 301 (--UUCG--- )------|-- --UC-GCCA- --UAGGAUGG |GACUGCGG| CCUAUCA-G- 361 CUUGUUGGUG AG(GUAAUGG )CCCACCAA| GGCGA-UUAC AGGUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----AAGCCC G|GAGAUGGG UA(CUGAGA- CACG)GACCC 481 AGGCCC(UAU G)GGGCGCAG CAGGCGAG-A AAACUUUGCA AUGUGC(GAA A)GCACGACA 541 AG|GUUAAUC CGAGUG-AU- ---------- (----)---- -------UUC UG--CUA--A 601 AG--AAAUC| UUUUGCCAGU C--------- ------(AUA AAAC--)--- ---------- 661 ----CACUGG UG-AAUAAGG GGUGGGCAAG UUCUG-GUG( UCA--GCCGC CGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAUGAUU AUUGGGC|CU AAAGCAUCCG UAGCCG|GCU 781 UUGUUAG|-- UUUUCGGUU- AAAUCCAUGU GC(UC-A)AC GCAUG-GGC- -UGCCGAAAA 841 UACUGCAU-G GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCAGUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUUGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUUCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACGAU GCAGACUC|G AUGAUGCAUU GGC-(A-UA- AU)A-GCCAG UGCAG-UGUC 1081 GCAGG(GAAG )CCGUUAAGU CUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGCGGUUCA AUUGG(AGUC 1201 AACG)CCGGA ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.NH2513 1924 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Novel major archaebacterial group from marine plankton JOURNAL Nature 356, 148-149 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: Z11568 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA NB: IDENT: psychroph. marine archae; distant rel. of Crenarchaeota BASE COUNT 50 a 41 c 62 g 47 t 1724 others ORIGIN 1 .......... .......... .......... ......(... )....|.... .......... 61 .......... .......... .......... .......... .......... .........( 121 -........) .......... .....|.... .......... .......... .......... 181 .......... .......... .......... .(.....).. .......... .......... 241 .......... ....(..... ...)...... ........-. ...-...... .......... 301 (......... )......|.. .......... .......... |........| .......... 361 .......... ..(....... )........| .......... .........| ....(....) 421 .......... .......... .......... .|........ ..(....... ....)..... 481 ......(... .)........ .......... .......... ......(... .)........ 541 ..|....... .......... .......... (....).... .......... .......... 601 .........| .......... .......... ......(... ......)... .......... 661 .......... .......... .......... .........( .......... ........). 721 ..CAG-|CAC CUCAAGUGGU CAGGAUGAUU AUUGGGC|CU AAAGCAUCCG UAGCCG|GCU 781 CUGUAAG|-- UUUUCGGUU- AAAUCCAUGU GC(UC-A)AC GCAUG-GGC- -UGCCGAAAA 841 UACUGCAU-A GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUCGAUGA CCACCUGUGG C(GAAG)GCG G-UG...... .......... 961 .......... .......... .......... ....(..... ....)..... .......... 1021 .......... ........|. .......... ....(.-..- ..)....... .......... 1081 .....(.... )......... ....|.|... .......... ....(....) .......... 1141 .......... .......... .......... .......... .......... .....(.... 1201 ....)..... ...-...... .......... ....|..... .........( ....)..... 1261 .......(.. ..)....|.. ......|... .......... .......... .......... 1321 .......... .......... |......... ...|...... ....|..... .|...(.... 1381 )......... (......).. .......... .......... |......... .......... 1441 .......... (.....)... .........| .......... .......... ....(..... 1501 .)........ .......... .......... .......... .......... .......... 1561 .......... .......... .......... .........( ....)..... .......... 1621 .......... .......... .......... (........) .......... .......... 1681 .......... .....(.... ...)...... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS 1.2.3.4-EN 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.3.4 ENVIRONMENTAL_CLONE_4B7. ACCESSION No information KEYWORDS No information. SOURCE 1.2.3.4 ENVIRONMENTAL_CLONE_4B7. ORGANISM 1.2.3.4 ENVIRONMENTAL_CLONE_4B7. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS C.symbio.A 1924 bp RNA RNA 06-OCT-1998 DEFINITION Cenarchaeum symbiosum A. str. A hypothetical protein 01 gene, complete cds; . ACCESSION AF0830 1 KEYWORDS . SOURCE Cenarchaeum symbiosum A. str. A hypothetical protein 01 gene, complete cds. ORGANISM Cenarchaeum symbiosum A. REFERENCE 1 (bases 1 to 32998) AUTHORS Schleper,C., DeLong,E.F., Preston,C.M., Feldman,R.A., Wu,K.Y. and Swanson,R.V. TITLE populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum Genomic analysis reveals chromosomal variation in natural JOURNAL J. Bacteriol. 180 (19), 5003-5009 (1998) STANDARD No information REFERENCE 2 (bases 1 to 32998) AUTHORS Feldman,R.A. TITLE Direct Submission JOURNAL Submitted (07-AUG-1998) Genomics, Diversa Corp., 10665 Sorrento Valley Rd., San Diego, CA 92121, USA STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AF083071 BASE COUNT 385 a 347 c 444 g 306 t 442 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~UGAA UCCGGU(UGA )UCCU|-GCC GGACCUG-AC 61 UGCUAUCGGA UUGAUACUAA GCCAUGCGA- --GUCA-UUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AAGGCAGACG GCUCAGUAAC ACGUAGUCAA 181 UCUAACCUAU GGACGGGGAU AACCU--CG- G(-GAAA)CU GAGAAUAAUA UCCGAUA--G 241 GCCA--CUAU GCC-(UGGAA U--)-GGU-U UGUG-GCC-- CAA-AUGA-- ---------- 301 (---UUUA-- )------|-- --UC-GCCG- --UAGGAUGG |GACUGCGG| UCUAUCA-G- 361 CUUGUUGGUG AG(GUAAUGG )CCCACCAA| GGCUA-UAAC AGAUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----AGGCCC G|GAGAUGGG UA(CUGAGA- CACG)GACCC 481 AGGCCC(UAU G)GGGCGCAG CAGGCGAG-A AAACUUUGCA AUGUGC(GAA A)GCACGACA 541 AG|GUUAAUC CGAGUG-UU- ---------- (----)---- -------UUC UG--CUA--A 601 AG--AAAUC| UUUUACCGGU C--------- ------(UUA AAAC--)--- ---------- 661 ----CACCGG CG-AAUAAGG GGUGGGCA-A GUUCUGGUG( UCA--GCCGC CGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAGGAUU AUUGGGC|CU AAAGCAUCCG UAGCCU|GCC 781 GUGUAAG|-- UUUUCGGUU- AAAUCUAUGC GC(UC-A)AC GCAUA-GGC- -UGCCGGAAA 841 UACUGCAC-G GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GGG(GUAAAA 901 )UCCUCUGAU CUAUCGAUGA CCCCCUGUGG C(GAAG)GCG G-UCUACUAG AACACGUCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACAAU GCAAACUC|A GUGAUGCAUU GGC-(GUAA- GA)--GCCAG UGCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAUACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGCGGUUCA AUUGG(AGUC 1201 AACG)CCAGA AA--UCUUAC CCGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGUG UGAAGGUCAA GCUGAAGA-C 1321 UCUACC-AGA -CAAGCUGAG |AGGUGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GAUGUCCUG (UUAAGU)CA GGUAACGAGC GAGAUCCUUG |CCUCUAG-U UGC-CACCAU 1441 UGCU----CU (CCGGA)--- -GCAG-UGG| GGCGAA-UUA GCGGGACCGC CGCA(GU-UA 1501 A)UGCGGAGG AAGGAAAGGG CCACGGCAGG UCAGUAUGCC CCGAAACUCU GGGGCCACAC 1561 GCGGGCUGCA AUGGUAGUGA CAAUGGGU-U -CCAUAUCC( GAAA)GGAGG AGGUAAUCCC 1621 C-AAACGCUA CCACAGUUAU GACUGAGGGC (UGCAACUC) GCCCUCACGA AUCUGGAAUC 1681 CCUAGUAACC GCGCG(UCAU UAC)CGCGCA GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGUU UCAUUGAAGU UUGCUUU-UA GUGA-G-GUG AC-GUC---- -----(-UAA 1801 UU-)------ --G-GCG-UU AUCGAACUU- GAGGUA-AGC GACAAGGGAA AAGUCGUAAC 1861 AAGGUGACCG UAGG(GGAA) CCUGCGGUCG GAUCACCUCC UUAG|aaacu ~~~~~~~~~~ 1921 ~~~| // LOCUS C.symbio.B 1924 bp RNA RNA 06-OCT-1998 DEFINITION Cenarchaeum symbiosum. str. B histone H1 DNA binding protein (hc2), hypothetical protein, lysyl tRNA synthetase (syk), and hypothetical protein 01 genes, complete cds; . ACCESSION AF0830 2 KEYWORDS . SOURCE Cenarchaeum symbiosum. str. B histone H1 DNA binding protein (hc2), hypothetical protein, lysyl tRNA synthetase (syk), and hypothetical protein 01 genes, complete cds. ORGANISM Cenarchaeum symbiosum. REFERENCE 1 (bases 1 to 42432) AUTHORS and Swanson,R.V. Schleper,C., DeLong,E.F., Preston,C.M., Feldman,R.A., Wu,K.Y. TITLE Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum JOURNAL J. Bacteriol. 180 (19), 5003-5009 (1998) STANDARD No information REFERENCE 2 (bases 1 to 42432) AUTHORS Feldman,R.A. TITLE Direct Submission JOURNAL Submitted (07-AUG-1998) Genomics, Diversa Corp., 10665 Sorrento Valley Rd., San Diego, CA 92121, USA STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: AF083072 BASE COUNT 383 a 344 c 442 g 305 t 450 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCCGGU(UGA )UCCU|-GCC GGACCUG-AC 61 UGCUAUCGGA UUGAUACUAA GCCAUGCGA- --GUCA-UUG ---------- -------UA( 121 -GC----AA) UA-------- -----|---C AAGGCAGACG GCUCAGUAAC ACGUAGUCAA 181 UCUAACCUAU GGACGGGGAU AACCU--CG- G(-GAAA)CU GAGAAUAAUA CCCGAUA--G 241 GCCA--CCAU GCC-(UGGAA U--)-GGU-U UGUG-GCC-- CAA-AUGA-- ---------- 301 (---UUUA-- )------|-- --UC-GCCG- --UAGGAUGG |GACUGCGG| UCUAUCA-G- 361 CUUGUUGGUG AG(GUAAUGG )CCCACCAA| GGCUA-UAAC AGAUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----AGGCCC G|GAGAUGGG UA(CUGAGA- CACG)GACCC 481 AGGCCC(UAU G)GGGCGCAG CAGGCGAG-A AAACUUUGCA AUGUGC(GAA A)GCACGACA 541 AG|GUUAAUC CGAGUG-UU- ---------- (----)---- -------UUC UG--CUA--A 601 AG--AAAUC| UUUUACCGGU C--------- ------(UUA AAAC--)--- ---------- 661 ----CACCGG CG-AAUAAGG GGUGGGCA-A GUUCUGGUG( UCA--GCCGC CGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAGGAUU AUUGGGC|CU AAAGCAUCCG UAGCCU|GCC 781 GUGUAAG|-- UUUUCGGUU- AAAUCUAUGC GC(UC-A)AC GCAUA-GGC- -UGCCGGAAA 841 UACUGCAC-G GCUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCAGUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUUGAUGA CCCCCUGUGG C(GAAG)GCG G-UCUACUAG AACACGUCCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACAAU GCAAACUC|G GUGAUGCAUU GGC-(GUAA- GA)--GCCAG UGCAG-UGCC 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGCGGUUCA AUUGG(AGUC 1201 AACG)CCUGA AA--UCUUAC CCGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGUG UGAAGGUCAA GCUGAAGA-C 1321 UUUACC-AGA -CAAGCUGAG |AGGUGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GAUGUCCUG (UUAAGU)CA GGUAACGAGC GAGAUCCUUG |CCUCUAG-U UGC-CACCAU 1441 UGCU----CU (CAGGA)--- -GCAG-UGG| GGCGAA-UUA GCGGGACCGC CGCA(GU-UA 1501 A)UGCGGAGG AAGGAAAGGG CCACGGCAGG UCAGUAUGCC CCGAAACUCU GGGGCCACAC 1561 GCGGGCUGCA AUGGUAGUGA CAAUGGGU-U -CCAUAUCC( GAAA)GGAGG AGGUAAUCCC 1621 C-AAACGCUA CCACAGUUAU GACUGAGGGC (UGCAACUC) GCCCUCACGA AUCUGGAAUC 1681 CCUAGUAACC GCGCG(UCAU UAC)CGCGCA GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGUU UCAUUGAAGU UUGCUUU-UA GUGA-G-GUG AC-GUC---- -----(-UAA 1801 UU-)------ --G-GCG-UU AUCGAACUU- GAGGUA-AGC GACAAGGGAA AAGUCGUAAC 1861 AAGGUGACCG UAGG(GGAA) CCUGCGGUCG GAUCACCUCC UUA~|~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.4B7 1924 bp RNA RNA 02-JUL-1998 DEFINITION clone 4B7.. ACCESSION No information KEYWORDS No information. SOURCE clone 4B7. ORGANISM clone 4B7. REFERENCE 1 AUTHORS Stein,J.L., Marsh,T.L., Wu,K.Y., Shizuya,H. and DeLong,E.F. TITLE Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase pair genome fragment from a planktonic marine Archaeon JOURNAL J. Bacteriol. 178, 591-599 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: U39635|g1127762 BASE COUNT 389 a 326 c 436 g 322 t 451 others ORIGIN 1 .......... .......... .......GAA UCCGUU(UGA )UCCU|-GAC GGACCUG-AC 61 UGCUAUCAGA UUGAUACUAA GCCAUGUUA- --GUCA-UUG ---------- -------UA( 121 -GU----AA) UA-------- -----|---C AAGGCAGACG GCUCAGUAAC GCGUAGUCAA 181 CCUAACUUAU GGACGGGGAU AACCU--CG- G(-GAAA)CU GAGAAUAAUA UCCGAUA--G 241 GUCA--UGAU GCC-(UGGAA U--)-GGU-U UAUG-ACU-- CAA-AUGA-- ---------- 301 (---UUUA-- )------|-- --UC-GCCG- --UAGGAUGG |GACUGCGA| GCUAUCA-G- 361 CUUGUUGGUG AG(GUAAUGG )CCCACCAA| GGCUA-UUAC AGCUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----UAGCCC G|GAGAUGGG UA(CUGAGA- CAAG)GACCC 481 AGGCCC(UAU G)GGGCGCAG CAGGCGAG-A AAACUUUGCA AUGCGC(GAA A)GCUCGACA 541 AG|GUUAAUC UGAGUG-GU- ---------- (----)---- -------UCC UG--CUA--A 601 AG--GAACC| UUUUGUUAGU C--------- ------(GUA GAAC--)--- ---------- 661 ----CACAAA CG-AAUAAGG GGUGGGCA-A GUUCUGGUG( UCA--GCCGC CGCGGUAA)A 721 ACCAG-|CAC CUCAAGUGGU CAGGAUGAUU AUUGGGC|CU AAAGCAUCCG UAGCCU|GUU 781 CUGUAAG|-- UUUUCGGUU- AAAUCUAUGC GC(UC-A)AC GUAUA-GGC- -UGCCGGAAA 841 UACUGCAG-A ACUA-GGGAG UGGGAGAGGU AGAC|GGUAC UCGGUAGGAA GGG(GUAAAA 901 )UCCUUUGAU CUAUCGAUGA CCACCUGUGG C(GAAG)GCG G-UCUACCAG AACACGUUCG 961 ACGGUGAGGG AUGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 UGUAAACGAU GCAAACUC|G AUGAUGCGUU GGC-(U-UA- UU)--GCUAG CGCAG-UGUC 1081 GCAGG(GAAG )CCGUUAAGU UUGC|C|GCC UGGGAAGUAC GUAC(GCAA) GUAUGAAACU 1141 UAAA-GGAAU UGGCGGGGGA GCACCACAAG GGGUGAAGCC -UGCGGUUCA AUUGG(AGUC 1201 AACG)CCUGA AA--CCUUAC CCGGAG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|AGA CAGC--AGAA UGAAGGUCAA GCUGAAGA-C 1321 UUUACC-AGA -CAAGCUGAG |AGGUGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GAUGUCCUG (UUAAGU)CA GGUAACGAGC GAGAUCCCUG |CCUCUAG-U UGC-CACUAU 1441 UACA----CC (CUGGU)--- -GUAG-UAG| GGCGAA-UUA GGGGGACCGC CGCA(GU-UA 1501 A)UGCGGAGG AAGGAAGGGG CCACGGCAGG UCAGUAUGCC CCGAAACUCU GGGGCCACAC 1561 GCGGGCUGCA AUGGUAGCGA CAAUGAGU-U -CCAAAAUC( GAAA)GAUGG AGGUAAUCCC 1621 U-AAACGCUA CCACAGUUGU GAUUGAGGGC (UGCAACUC) GCCCUCAUGA ACAUGGAAUC 1681 CCUAGUAACC GCGUG(UCAU UAU)CGCGCA GUGAAUACGU CCCUGCUCCU UGCACACACC 1741 GCCCGUCGUU UCAUUGAAGU UUGCCUU-UA GCGA-G-GUG AU-GUC---- -----(-UAA 1801 UU-)------ --G-GCA-UU AUCGAACUU- GGGGUA-AGU GACAAGGGAA AAGUCGUAAC 1861 AAGGUGACCG UAGG(GGAA) CCUGCGGUCG GAUCACCUCC UU..|..... ........~~ 1921 ~~~| // LOCUS 1.2.4-XENA 1924 bp RNA RNA 09-JAN-1999 DEFINITION 1.2.4 XENARCHAEA. ACCESSION No information KEYWORDS No information. SOURCE 1.2.4 XENARCHAEA. ORGANISM 1.2.4 XENARCHAEA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 1924 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~- ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~| // LOCUS env.pJP27 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25852 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 273 a 380 c 496 g 190 t 585 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGAGGGA-AC 61 CCCUAUCGGG CUCGCACUAA GCCAUGCGA- --GUCU-GCU ---------- ---GGGGGC( 121 -CCC---CU) GCCCCC---- -----|---G GUGGCGCACG GCUCCGUAAU ACACGGUCAA 181 CCUGUCCUGG GGACCGGGAU AACCU--CG- G(-GAAA)CU GAGGCCAAUA CCGGAUA--G 241 GGGU--GGAU UCC-(UGGAA UG-)-GGU-C CACC-CCU-- AAA-GUAGGC G---GGGG-- 301 (--GACGG-- )--CCCC|GC UGAG-GCCC- --CAGGGUGG |GACCGUGG| CCUAUCA-G- 361 GUAGUAGGUG GG(GUAACGG )CCCACCUA| GCCUA-AGAC GGGUACGGG| CUCU(GAGA) 421 GGAG------ ---------- ----GAGCCC G|GAGAUGGG CA(CUGAGA- CAAG)GGCCC 481 AGGCCC(UAC G)GGGNGCAG CAGGCGGG-A AACUUCCCCA AUGCGC(GCA A)GCGUGAGG 541 GA|GUGAGCC CGAGUG-CC- ---------- (----)---- ---------G CC-CGCUG-A 601 GG--GCGGC| UGUUCCCCUG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCAGGG GGUAGGAAGG GGAGGGUA-A GGCUG-GUG( CCA--GCCGC CGCGGUAA)A 721 ACCAG-|CUC CCCGAGGGGU UCCCACGCAU ACUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 CCGUAAG|-- UCCUCGGUU- AAAUCCGCCU G-(AA-G)AC AGGCG-GAC- -CGCCGAGGA 841 UACUGCGG-G GCUA-GGGAG CGGGAGGGGC CGAG|GGUAU UCCGGGGGGA GCG(GUAAAA 901 )UGCGUAGAU CCCCGGAGGA CCACCAGUGG C(GAAG)GCG C-UCGGCUGG AACGCGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCCGGCUA|G GUGCCGGCUG AGGU(--UU- CG)-GCCUCA GCCGG-UGUC 1081 GAAGC(GAAG )GCAUUAAGC CGGC|C|GCC UGAGGAGUAC AGCC(GCAA) GGCCGAAACU 1141 UAAA-GGAAU UGACGGGGGG GCACCACAAG GGGUGAAUGC CUGCGGCUCA AUUGG(ACUC 1201 AACG)CCGGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGUCAG GCUGAAGA-C 1321 CUUACC-UGA -CGCGCUGAG |GGGUGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCG |CCCUCAG-U UGC-CAGCGG 1441 GGCC------ (UUAC-)--G GCUGG-CCG| GGCAAA-CUG GGGGGACUGC CGGC(GA-AG 1501 A)GCCGGAGG AAGGAGGGGG CUACGGCAGG UCAGUAUGCC CCUAAUCCCC CGGGCCGCAC 1561 GCGGGCUGCA AUGGGCGGGA CAGCGGGA-U -GCGACCCC( GAGA)GGGGG AGCAAGUCCC 1621 UGAAACCCGC CCGUGGUUGG GAUCGAGGGU (UGCAACUC) GCCCUCGUGA ACCCGGAAUC 1681 CCUAGUAACC GCGGU(UCUC CAU)ACCGCG GUGAAUACGU CCCUGCCCCU .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| // LOCUS env.pJP78 1924 bp RNA RNA 02-JUL-1998 DEFINITION Mud Volcano. ACCESSION No information KEYWORDS No information. SOURCE Mud Volcano. ORGANISM Mud Volcano. REFERENCE 1 AUTHORS Barns,S.M., Fundyga,R.E., Jeffries,M.W. and Pace,N.R. TITLE Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1609-1613 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 1924) Corresponding GenBank entry: L25303 library_source= Mud Volcano area of Yellowstone NP ("Black Pool") hot spring DNA BASE COUNT 288 a 368 c 483 g 198 t 587 others ORIGIN 1 .......... .......... .......... ......(... )....|.... GGAGGGA-AC 61 CCCUAUCGGG UUCAGACUAA GCCAUGCAA- --GUCG-GCU ---------- ---GGGGGC( 121 -AC----UU) GCCCCU---- -----|---G GCGGCGCACG GCUCAGUAAU ACGCGGUCAA 181 CCUACCCUGG GGACCGGGAU AACCU--CG- G(-GAAA)CU GAGGCUAAUC CCGGAUA--G 241 GUGU--GGGG UGC-(UGAAA U--)-GCC-C UCAC-GC--- CAA-AAGUAG GC--GGGA-- 301 (--AAUG--- )--GACC|GC UGAG-GCCC- --CAGGAUGG |GACCGNGG| CCUAUCA-G- 361 GUAGUAGGUG GG(GUAACGG )CCCACCUA| GCCUA-CGAC GGGUACGGG| CCCU(GAGA) 421 GGGG------ ---------- ----GANCCC G|GAGAUGGG CA(CUGAGA- CAAG)GGUCU 481 AGGCCC(UAA G)GGGUGCAG CAGGCGCG-A AGAUUCCGCA AUGCCC(GAA A)GGGCGACG 541 GA|GUGAACC CGAGUG-CC- ---------- (----)---- -------ACC CG--CUG--A 601 GG--AUGGC| UGUUCCCCUG U--------- ------(GUA AAAA--)--- ---------- 661 ----GCAGGG GGUAGAAAGG GGAGGGCA-A GGCUG-GUG( GCA--GCCGC CGCGGUAA)A 721 ACCAG-|CUC CCCGAGGGGU UCCCACGCAU ACUGGGC|CU AAAGCGUCCG UAGCCG|GCC 781 CUGCAAG|-- UCUGCAGUU- AAAUCCGCCU GU(AG-A)CA GGCGG-GCU- --GCUGCAGA 841 UACUGCAG-G GCUA-GGGAG CGGGAGGAGC CGGG|GGUAU UCCCGGGGGA GCG(GUAAAA 901 )UGCGUAGAU CCCGGGAGGA CCACCAGUGG C(GAAG)GCG C-CCGGCUUG AACGCGUCCG 961 ACGGUGAGGG ACGAAAGCUG GGGGAGCAAA CCGG(AUUAG AUAC)CCGGG UAGUCCCAGC 1021 CGUAAACGAU GCCGGCUA|G GUGCUGGCCA AGGU(--UU- CG)-GCCUUG GCCAG-UGUC 1081 GAAGC(GAAG )GCAUUAAGC CGGC|C|GCC UGAGGAGUAC GGCC(GCAA) GGCUGAAACU 1141 UGAA-GGAAU UGACGGGGGG GCACCACAAG GGGUGAAUGC CUGCGGCUUA AUUGG(ACUC 1201 AACG)CCGGG AA--UCUUAC CGGGGG---- ----|----- ---------( ----)----- 1261 -------(-- --)----|-- ------|CGA CAGC--AGGA UGAAGGUCAG GCUGAAGA-C 1321 CUUACC-AGA -CGCGCUGAG |GGGUGGUGC AUG|GCCGUC GCCA|GCUCG U|GCC(GUGA 1381 )GGUGUCCUG (UUAAGU)CA GGCAACGAGC GAGACCCCCG |CCCCUAG-U UGC-CAGCGG 1441 CCUCC----- (UUCG-)--G GAGGGACCG| GGCAAA-CUA GGGGGACCGC CUCC(GA-AG 1501 A)GGAGGAGG AAGGUGGGGG CUACGGCAGG UCAGUAUGCC CCUAAUCCCC CGGGCCGCAC 1561 GCGGGCUGCA AUGGGCGGGA CAGCGGGA-U -GCGACCCC( GAGA)GGGGG AGCUAAUCCC 1621 UCAAACCCGC UCGUAGUUGG GAUCGAGGGC (UGCAACUC) GCCCUCGUGA ACCCGGAAUC 1681 CCUAGUAACC GCGGU(UCUC CAU)ACCGCG GUGAAUACGU CCCUGCCCCU .......... 1741 .......... .......... .......... .......... .......... .....(.... 1801 ...)...... .......... .......... .......... .......... .......... 1861 .......... ....(....) .......... .......... ....|..... ........~~ 1921 ~~~| //