LOCUS E.coli.ref 5903 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: J10695 Phylo:Eubacteria,Purple,gamma,3 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 4361 others ORIGIN 1 |--------- AAAUUGAAGA GUU(UGA)UC AU|GGCUCA- G-AU-UGAAC --GCUGGCGG 61 CAGG|-C-CU AA-CACAUGC A-AGUCG-AA CG|GUAACAG |GAAGAAG(C UUG)[----- 121 ---------- ---------- ---------- ---------- ---------- ---]CUUCUU 181 UGCUG|ACGA GU|GGCGGA- CGGGU-GAGU AAUG-UCUG- GGA--AAC-- ----UGCCUG 241 AUGG<----- ---------- ---------- ---------- ---------- ---------- 301 ->AGGGGG-A UAACUACUG( -G-A-AA)CG GUAGC-UAA- UACCGCAUAA CGUC(GCAA) 361 GACCAAAGAG GGGGACC(UU CG)GG|CCUC UU<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> GCCAUCGGAU -GU|GCCCAG AU|--GGG-A UUA--GCUA- --GUAGGUG- 1141 GG(-GUAACG G)CUC-ACCU A-|GGCGA-C GAU|CCCU-- A-GCUG|GUC -U-(GAGA-) 1201 GGA-UGACC- AGC|CACACU G-GAAC(U-G AGACAC)GGU CCAG-ACUCC (UACG-)GGA 1261 -GGCAGC-A- ---------| GUG-GG-GA- AUAUU-GCAC -AAUGGG-C( --GCAA--)G 1321 CCUG-A-UGC -|A|GCCAUG CCGC-GUGUA UGAAGAAGGC C(UUCG)GGU UGUAAAGUAC 1381 |UUUC|AGCG GGGAGGAAGG GAGUAAAG(U UAAUAC)CUU UGCUCAUUGA CGUUACCCGC 1441 AGAAG----- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ----->AAGC 1561 ACC-|GG-CU A-AC-U-CCG U-G(CCA-GC -AGCC|GC-G GU-AA)UACG GAG|-GGUGC 1621 A-AGCGUU|A AUCGG--AAU UACUG-GGC| GUA--AAGCG CACGCAGGCG |GUUUGUUAA 1681 G|UCAGAUGU GAAAUCCCCG GG(CUCAA)C CUGGGAACUG CAUCUGAUAC U|GGCAAGC< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- --------UU GAGUC|UCGU ---------- 3001 --AGAGGGGG GU|--AGAAU UCCAGGU-GU -AGCG(GU-G AAA---)UGC G-UAGA-G-A 3061 UCUGG-AGG- A-AUACCG-G UGGC(-GAAG )--GC|G--- GCCCCC-UG| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CGA ---AGACUGA -CGC-U|CA- G-GUGCGAAA 3301 GCGUGGGGA- GCAAACAGG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CC-U -GGUAG|UCC AC--GCC-GU AAACGAUGUC GAC|UU|--- 3421 --GGAGG-UU GUG-C-C--- ----(----- CUUGA----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------G G-CG-UGG-C -U-UCCG--- ---------- ----GAGC(- 3661 UAAC-)GCGU UAAGUC---- -GAC|-C|G- CCUGGGGAGU AC--GG-CC( --GCAA-)GG 3721 UUA-AAACUC -AAAU--GAA -UUG|AC-GG -GG-GCCCG- -C-AC-AAGC ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCAUGUG|G UU-UAAUUCG (AUGCAA-CG )CGAA--GAA CCUUACCUGG UC[------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- -]UUGACAUC |CACGGAAGU UUUCA(GAGA )UGAGAAUGU GCC(UUCG)G 4201 GAA|CCGUGA GAC|AG*GU- GCU-G-CAUG |GCU|GU-CG UCA|GCUCG- U|GUU(-GUG 4261 A-)AAUGUU- -GGG(UU-AA GU)CCCGCA- AC-GAGCGCA ACCCU-UA|U CCUUUGUUGC 4321 CAGCGG(UCC GG)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]C CG|----GGA ACUCAAAGGA GACU-GCC-A -G-U(----- 5041 --GAUAA-)A CUGG-A-GGA AGGU-GGGGA UGACGU--CA AGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAU-C- A|UGGC|CC- 5221 U-U-A-CGAC CAGG-GCUAC A-CACGUGCU ACAAU--G-G CGCAUACAAA GAGAAGCGAC 5281 CUC(-----G CGA-)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ------]GAG CAAGCGGACC 5461 UCAUAAAGUG CGU-C-G--- UAGU-C-CGG AUUGGAGUC( UGCAACUC)G ACUCCAUG-A 5521 AGUCGG-AAU C--GCUAGUA AU-CGU-GGA (-UCAGAAU- )GCCAC-G-G -UGAAUACG- 5581 U-UCCCGGGC CU|UGUA-CA CACCGCCCGU CACACC-A-U GG-GAG---U GG-GUUGCA- 5641 AAA-GAAG-- UA-GGUAG-C UUA-ACC--- ---------- ---------- ---------- 5701 -------(UU CG----)--- ---------- ---------- ---------- ---------- 5761 -------GGA -GGGC-|GCU -UACC-ACUU UG-UGA-U-U CAUG-ACUGG GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----A-A-C CGUAGG(GGA A)CCUGCGGU UGGAUCACCU 5881 CCUUA~~~~~ ~~~~~~~~|| ||| // LOCUS (1)-Eukary 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (2)-Amoebi 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (2)-Dictyo 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS D.discoi.1 5903 bp RNA RNA 10-APR-1991 DEFINITION Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Dictyostelium discoideum. ORGANISM Dictyostelium discoideum. REFERENCE 1 AUTHORS Olsen,G.J., McCarroll,R. and Sogin,M.L. TITLE Secondary structure of the Dictyostelium discoideum small subunit JOURNAL Nucleic Acids Res. 11, 8037-8049 (1983) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X00134 Phylo:Eukaryotes,Protozoan BASE COUNT 531 a 347 c 447 g 545 t 4033 others ORIGIN 1 |--------- -----UAACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaauuc--uu ---------- -gu-a-cgau gaa]------ 181 -----|---A CU|G-CAGA- CGGCU-CAUU ACAa-cagu- gau-aaac-- ----uaauag 241 acuu<----- ---------- ---------- -----ucggg uuuu-acc-- ---------- 301 ->UUUUGG-A UAACCGCAG( -U-AAAU)C- GGGGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -aagucuacu -gu|gucacu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-GUAUUG G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACUC -AAUCCC-A( ---aua--)C 1321 GGGG-A-AGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUA-CC-- uaUCC(---- --uuuuu)GG A---G-GGCA A-UUGAAAU- 1501 ------GAAC ----ACAAAU -UAAA--ACU C-----UU-A A-U-U-AACA C---->AAUU 1561 GnAG|GG-CA A-GU-C-UGG U-G(CCA-GC -NGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCAUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuuaagg u-uuac-cgg guuuau--g- uc-auuuacc acuucg-ugg ---------- 1801 ---------- ------u-u- aaaucg-a-- -caccgguau cucuuu-cuu aa-------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- -uaguucagc 2161 uuguauu--- ---------- ---------- ---aucuuug auag------ ---------- 2221 ----ugcuug uuuggaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUCACUG UG-AGAA--A 2461 AUUGUGGUGU UU-AA-AG-C AGGCguc--- ---------- ---------- ---------- 2521 --------uc gccu-g--au cuuuug-CAG CAUGGuA|UG -AUGAAA-CA -uGAC--au- 2581 uuua------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|--CgC 2821 --U-AUUGGU -UU-GC---- -----guuu- aaa--GuGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGA ---------- 3001 --UGGGGGUG UU|--CAUAU UGGUGGG-CG -AGAG(GU-G AAA---)UUC G-UUGA-C-C 3061 CUAUC-AAG- A-UGAACU-U CUGC(-GAAA )--GC|A--- UUCACC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UCCCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUUGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC AA--ACU-AU AAACUAUGUC GAC|CA|--- 3421 --gggau-cg guu-a-a-aa uuu-(----- uuuca----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----aaau-u u-aa-ucg-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCau -GAGUG-uuu aGAU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -C-ACAAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CU )CGGG--AAA ACUUACCAAG CU[aag-aua 4081 uagu-aagga uu-----gac aga(cuaaaa g-a)------ ucuuu----- cau-gauu-c 4141 uauaag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UC-AA UU)CCGAUA- AC-GGACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CcU-GC UAACUAGuag u--auuuauu agucgauaua gacg-auagc 4381 uuu--ucugg g---guuugg aaugau(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------g ucaucuccug 4621 cuucaaggag uguguagucu gacucgauag guacgaau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaaAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Acc-u -g-c(----- 5041 --cucaa-)g cagg-C-GGA AGUC-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UACC UUGG-GCCGC A-CGCGCGCU ACAAU--G-U AGGAA----- ---------- 5281 ---(------ ----)[acaa aaag------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gcuccu-gg ucc(ggaa-) ggauu----g gguaau-cau uugaau]--- ---------- 5461 -------uuc cua-c-g--- uAAC-U-GGG CUUGAUCUU( UGUAAUUA)U UGAUCAUA-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGU-AAG (-UCAUUAC- )CUUAU-G-C -UGAAUAUG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-UGAuac- 5641 ggu-aaag-- uua-acgga- ucgu-uuua- ucug-ug--- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- --ca-cug-- 5761 auauaa-auu -aaaa-|guu -auuuaaauc uc-auu-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCA--- 5881 -UUUU~~~~~ ~~~~~~~~|| ||| // LOCUS D.discoi.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Dictyostelium discoideum. ORGANISM Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: K02641 LOCUS DDIRGSS 1872 bp ds-DNA INV 15-JUN-1989 DEFINITION Slime mold (D.discoideum) 17S small subunit ribosomal RNA gene, complete coding sequence. ACCESSION K02641 KEYWORDS . SOURCE Slime mold (D.discoideum) rDNA. ORGANISM Dictyostelium discoideum Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Eumycetozoa; Dictyostelia; Dictyosteliida; Dictyosteliidae. REFERENCE 1 (bases 1 to 1872) AUTHORS McCarroll,R., Olsen,G.J., Stahl,Y.D., Woese,C.R. and Sogin,M.L. TITLE Nucleotide sequence of the Dictyostelium discoideum small-subunit ribosomal ribonucleic acid inferred from the gene sequence: Evolutionary implications JOURNAL Biochemistry 22, 5858-5868 (1983) STANDARD full staff_review COMMENT Base 542 is a purine in a highly conserved region in all eukaryotic small subunit rRNA sequences. By comparison with other sequences [1] concluded that this base is probably "g". By the same reasoning base 562 is probably "a". [1] compares the sequence presented here with eukaryotic 17S small subunit rRNA gene sequences of other organisms, to obtain phylogenetic information. FEATURES from to/span description rRNA 1 1872 17S small subunit rRNA BASE COUNT 531 a 347 c 447 g 545 t 2 others ORIGIN 9 bp upstream of Sau3A site. BASE COUNT 531 a 347 c 447 g 545 t 4033 others ORIGIN 1 |--------- -----UAACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaauuc--uu ---------- -gu-a-cgau gaa]------ 181 -----|---A CU|G-CAGA- CGGCU-CAUU ACAa-cagu- gau-aaac-- ----uaauag 241 acuu<----- ---------- ---------- -----ucggg uuuu-acc-- ---------- 301 ->UUUUGG-A UAACCGCAG( -U-AAAU)C- GGGGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -aagucuacu -gu|gucacu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-GUAUUG G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACUC -AAUCCC-A( ---aua--)C 1321 GGGG-A-AGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUA-CC-- uaUCC(---- --uuuuu)GG A---G-GGCA A-UUGAAAU- 1501 ------GAAC ----ACAAAU -UAAA--ACU C-----UU-A A-U-U-AACA C---->AAUU 1561 GRAG|GG-CA A-GU-C-UGG U-G(CCA-GC -RGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCAUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuuaagg u-uuac-cgg guuuau--g- uc-auuuacc acuucg-ugg ---------- 1801 ---------- ------u-u- aaaucg-a-- -caccgguau cucuuu-cuu aa-------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- -uaguucagc 2161 uuguauu--- ---------- ---------- ---aucuuug auag------ ---------- 2221 ----ugcuug uuuggaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUCACUG UG-AGAA--A 2461 AUUGUGGUGU UU-AA-AG-C AGGCguc--- ---------- ---------- ---------- 2521 --------uc gccu-g--au cuuuug-CAG CAUGGUA|UG -AUGAAA-CA -UGAC--au- 2581 uuua------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|--CgC 2821 --U-AUUGGU -UU-GC---- -----guuu- aaa--GUGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGA ---------- 3001 --UGGGGGUG UU|--CAUAU UGGUGGG-CG -AGAG(GU-G AAA---)UUC G-UUGA-C-C 3061 CUAUC-AAG- A-UGAACU-U CUGC(-GAAA )--GC|A--- UUCACC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UCCCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUUGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC AA--ACU-AU AAACUAUGUC GAC|CA|--- 3421 --gggau-cg guu-a-a-aa uuu-(----- uuuca----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----aaau-u u-aa-ucg-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCau -GAGUG-uuu aGAU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -C-ACAAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CU )CGGG--AAA ACUUACCAAG CU[aag-aua 4081 uagu-aagga uu-----gac aga(cuaaaa g-a)------ ucuuu----- cau-gauu-c 4141 uauaag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UC-AA UU)CCGAUA- AC-GGACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGuag u--auuuauu agucgauaua gacg-auagc 4381 uuu--ucugg g---guuugg aaugau(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------g ucaucuccug 4621 cuucaaggag uguguagucu gacucgauag guacgaau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaaAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Acc-u -g-c(----- 5041 --cucaa-)g cagg-C-GGA AGUC-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UACC UUGG-GCCGC A-CGCGCGCU ACAAU--G-U AGGAA----- ---------- 5281 ---(------ ----)[acaa aaag------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gcuccu-gg ucc(ggaa-) ggauu----g gguaau-cau uugaau]--- ---------- 5461 -------uuc cua-c-g--- uAAC-U-GGG CUUGAUCUU( UGUAAUUA)U UGAUCAUA-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGU-AAG (-UCAUUAC- )CUUAU-G-C -UGAAUAUG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-UGAuac- 5641 ggu-aaag-- uua-acgga- ucgu-uuua- ucug-ug--- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- --ca-cug-- 5761 auauaa-auu -aaaa-|guu -auuuaaauc uc-auu-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCA--- 5881 -UUUU~~~~~ ~~~~~~~~|| ||| // LOCUS D.discoi.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE Dictyostelium discoideum. ORGANISM Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X00601 LOCUS DDIRGA 7972 bp ds-DNA INV 15-JUN-1989 DEFINITION Slime mold (D.discoideum) ribosomal RNA gene. ACCESSION X00601 KEYWORDS 17S ribosomal RNA; 26S ribosomal RNA; 5.8S ribosomal RNA; ribosomal RNA. SOURCE Slime mold (D.discoideum) DNA. ORGANISM Dictyostelium discoideum Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Eumycetozoa; Dictyostelia; Dictyosteliida; Dictyosteliidae. REFERENCE 1 (bases 1 to 7972) AUTHORS Ozaki,T., Hoshikawa,Y., Iida,Y. and Iwabuchi,M. TITLE Sequence analysis of the transcribed and 5' non-transcribed regions of the ribosomal RNA gene in Dictyostelium discoideum JOURNAL Nucleic Acids Res. 12, 4171-4184 (1984) STANDARD simple staff_review COMMENT EMBL features not translated to GenBank features: key from to description SITE 1 998 NTS (non-transcribed spacer) SITE 999 1793 ETS (external transcribed spacer) SITE 3665 3994 ITS 1 (internal transcribed spacer) SITE 4157 4731 ITS 2 FEATURES from to/span description rRNA 1794 3664 17S rRNA rRNA 3995 4156 5.8S rRNA rRNA 4732 > 7972 26S rRNA BASE COUNT 2277 a 1504 c 1943 g 2248 t ORIGIN BASE COUNT 531 a 348 c 448 g 544 t 4032 others ORIGIN 1 |--------- -----UAACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaauuc--uu ---------- -gu-a-cgau gaa]------ 181 -----|---A CU|G-CAGA- CGGCU-CAUU ACAa-cagu- gau-aaac-- ----uaauag 241 acuu<----- ---------- ---------- -----ucggg uuuu-acc-- ---------- 301 ->UUUUGG-A UAACCGCAG( -U-AAAU)C- GGGGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -aagucuacu -gu|gucacu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-GUAUUG G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACUC -AAUCCC-A( ---aua--)C 1321 GGGG-A-AGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUACCU-- A-UCC(---- --uuuuu)GG A---G-GGCA A-UUGAAAU- 1501 ------GAAC ----ACAAAU -UAAA--ACU C-----UU-A A-U-U-AACA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 UuAGCAUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuuaagg u-uuac-cgg guuuau--g- uc-auuuacc acuucg-ugg ---------- 1801 ---------- ------u-u- aaaucg-a-- -caccgguau cucuuu-cuu aa-------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- -uaguucagc 2161 uuguauu--- ---------- ---------- ---aucuuug auag------ ---------- 2221 ----ugcuug uuuggaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUCACUG UG-AGAA--A 2461 AUUGUGGUGU UU-AA-AG-C AGGCguc--- ---------- ---------- ---------- 2521 --------uc gcc--g---u cuuuug-CAG CAUGGuA|UG -AUGAAA-CA -uGAC--au- 2581 uuua------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|--CgC 2821 --U-AUUGGU -UU-GC---- -----guuu- aaa--GuGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGA ---------- 3001 --UGGGGGUG UU|--CAUAU UGGUGGG-CG -AGAG(GU-G AAA---)UUC G-UUGA-C-C 3061 CUAUC-AAG- A-UGAACU-U CUGC(-GAAA )--GC|A--- UUCACC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACC ---UCCCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUUGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC AA--ACU-AU AAACUAUGUC GAC|CA|--- 3421 --gggau-cg guu-a-a-aa uuu-(----- uuuca----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----aaau-u u-aa-ucg-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCau -GAGUG-uuu aGAU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -C-ACAAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CU )CGGG--AAA ACUUACCAAG CU[aag-aua 4081 uagu-aagga uu-----gac aga(cuaaaa g-a)------ ucuuu----- cau-gauu-c 4141 uaugag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UC-AA UU)CCGAUA- AC-GGACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGuag u--auuuauu agucgauaua gacg-auagc 4381 uuu--ucugg g---guuugg aaugau(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------g ucaucuccug 4621 cuucaaggag uguguagucu gacucgauag guacgaau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaaAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Acc-u -g-c(----- 5041 --cucaa-)g cagg-C-GGA AGUC-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UACC UUGG-GCCGC A-CGCGCGCU ACAAU--G-U AGGAA----- ---------- 5281 ---(------ ----)[acaa aaag------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gcuccu--g ucc(ggaa-) ggauu----g gguaau-cau uugaau]--- ---------- 5461 -------uuc cua-c-g--- uAAC-U-GGG CUUGAUCUU( UGUAAUUA)U UGAUCAUA-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGU-AAG (-UCAUUAC- )CUUAU-G-C -UGAAUAUG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-UGAuac- 5641 ggu-aaag-- uua-acgga- ucgu-uuua- ucug-ug--- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- --ca-cug-- 5761 auauaa-auu -aaaa-|guu -auuuaaauc uc-auu-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCA--- 5881 -UUUU~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Diplom 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Hexami.sp. 5903 bp RNA RNA 11-JAN-191 DEFINITION Hexamita sp.. ACCESSION No information KEYWORDS No information. SOURCE Hexamita sp. ORGANISM Hexamita sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z17224 LOCUS HSRRNAA 1550 bp RNA INV 03-MAR-1993 DEFINITION Hexamita sp. gene encoding rRNA. ACCESSION Z17224 KEYWORDS rRNA. SOURCE Hexamita sp. ORGANISM Hexamita sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Zoomastigophora; Diplomonadida; Diplomonadina; Hexamitidae. REFERENCE 2 (bases 1 to 1550) AUTHORS van Keulen,H. TITLE Direct Submission JOURNAL Submitted (07-OCT-1992) Van Keulen H., Cleveland State University, Biology, 1983 East 24th street, Cleveland, Ohio, U.S.A., 44115 STANDARD full automatic REFERENCE 3 (bases 1 to 1550) AUTHORS van Keulen,H., Gutell,R.R., Gates,M.A., Campbell,S.R., Erlandsen,S.L., Jarroll,E.L., Kulda,J. and Meyer,E.A. TITLE Unique phylogenetic position of Diplomonadida based on the complete small subunit ribosomal RNA sequence of Giardia ardeae, G. muris, G. duodenalis and Hexamita sp JOURNAL FASEB J. 7, 223-231 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..1550 /organism="Hexamita sp." /germline /dev_stage="Trophozoite" /cell_line="culture" rRNA 1..1550 /function="constituent of small ribosomal subunit" /product="rRNA" /gene="rRNA" /standard_name="16S rRNA" /citation=[1] BASE COUNT 391 a 348 c 449 g 362 t ORIGIN BASE COUNT 391 a 348 c 449 g 362 t 4353 others ORIGIN 1 |--------- -----UACCU GGU(UGA)AC CU|GCCAGA- A-GG-G-CAA --GCUAAGAU 61 UAAG|-GAUU AA-GCCAUGC A-UGCC--AG GU|------- |-------(- ---)[----- 121 ---------- ---------- auaagcuaau ---------- -acac-aggu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAu-cagu- uga-aaug-- ----ucucgu 241 gcuu<----- ---------- ---------- ---------- ---------- ----uauucg 301 u>agucgg-c uaauacggg( -c-a-ac)uc ucuua-cua- aucgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ----cuucgu u--acaucgg uagugaga(- ---------- ---------- ---------- 721 -----gcga- -)ucucg--- ---------- ---------- -------ggu ug--auuuau 781 g-uuguaaaa auga------ ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- -----cuguu aggc------ ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -aggcacgau -ca|gcuucu ga|--CGC-A UCA--UUAA- --GUAGGAG- 1141 AA(-GUAAAG G)UUA-UCCU A-|UGAGU-U CAC|GCGU-A C-CGGA|GAA -U-(UAGG-) 1201 GUU-CGACU- CCG|GAGAAU G-AGCA(U-G AGAGAC)GGC UCAU-AGUUC (UAAG-)GGA 1261 -GGCAGC-A- ---------| GGC-GC-GG- AAAUU-GCCC -AAUGUA-C( --aaac--)G 1321 UACG-A-GGC -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---cuugag- ccggc(---- ---uuag)gc cggua-uuaa g--------- 1501 ----cuGAgc ----gagg-c -gcac--aca c-----cc-u cgcga-acgc ----->AAUU 1561 AGUG|GG-AG A-GC-A-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AU-|CACUGA 1621 U-AGCUUU|C UCUUA--CGU UGUUG-CAG| UUA--AAAAG CUCGUAGCCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 uu----guua g-cccc-gcg ugucac--u- uu-gagaaaa ucggag-ugu ---------- 1801 ---------- ------u-c- auuaca-g-- -ggaaaccgc ugcaca-gua ca-------- 1861 gcaaagaaug a-cauugcuc cccggcgacg ggggguacgg aguaua---- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -UGGC|GGCG ---------- 3001 --CGGGACUG AU|--AGUAU UUGGUGG-GG -ACAG(GU-G AAA---)UAG G-AUGA-U-C 3061 CACCA-AGG- A-CUUUCA-A CAGC(-GAAG )--GC|A--- GUCGGU-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCC ---GUCCAGU -UGG-U|CA- A-GAGCGAAA 3301 GUGUGAGGA- UAGACGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAAAC)CG-U -UUUAU|UUC AC--GCC-UU AAACGAUACC AUC|UC|--- 3421 --agaag-cg ggc-u----- ----(----- caga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-gu-ccg-c -a-ucuc--- ---------- ----aaGG(- 3661 GAAA-)CCGc -aAGUU--uc gGGU|-U|C- UGGGGGAAGU AU--GA-UU( --GCAA-)GA 3721 UUG-AAACUU -GAAG--GUA -UUG|AC-GG -AA-AGAUA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUUUG (ACUCAA-CA )CGCA--AA- UCUUACCAGA CC[cag-aug 4081 cuuu-acgga gc-----aac aga(uuaaga g-u)------ ucuuu----- ugc-gauu-g 4141 ggcagu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UC CUA|GUUCG- U|GGU(-GUA 4261 A-)ACUGUC- -UGC(CU-UA UU)GCGUUA- AC-GAGCGAG ACAAC-CA|- ---------- 4321 ------(--- --)[ccccca ---------- ---------- ---------g cc-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --uggggg]- --|------- ---------- GAGC-Gcc-u -g-c(----- 5041 --guuga-)g cagg-A-CGA ACGU-GGUUG CUCUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CACU CUGG-GCCGC A-CGCGUACU ACAAU--G-U CGGCU----- ---------- 5281 ---(------ ----)[gcac agcg------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucgcc-c- gcc(ugaa-) ggcccg--gc cauu---cgu gugaac]--- ---------- 5461 -------cgc cga-C-G--- UGGU-A-GGG AUCGGAGAU( UGGAAU-U)U UUCUCGUG-A 5521 ACGAGG-AAU G--UCUUGUA GG-UCU-GCG (-UUAUUAG- )CGCGGGG-C -UGACUAUG- 5581 U-CCCUGUCU UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC-UUG GA-UGuuuu- 5641 ggu-gagu-- ugu-ccaga- gugc-gcgu- ---------- ---------- ---------- 5701 -------(cg cg----)--- ---------- ---------- ---------- ---------- 5761 --gcau-gca -cgaa-|guu -cugcgaacc cc-aau-g-u cugg-AGGAA GG-AGAA-G- 5821 UCAUAACAAG GC-------- -----U-G-C UGUAGG(GGA A)CCUGCAGC CGGAUCA--- 5881 --uuagugcc -------~|| ||| // LOCUS G.ardeae 5903 bp RNA RNA 11-JAN-191 DEFINITION Giardia ardeae. ACCESSION No information KEYWORDS No information. SOURCE Giardia ardeae. ORGANISM Giardia ardeae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z17210 Giardia ardeae 18S rRNA gene. BASE COUNT 240 a 474 c 548 g 173 t 4468 others ORIGIN 1 |--------- -----CAUCC GGU(UGA)UC CU|GCCGGA- G-CG-C-GAC --GCUCGCCC 61 CAAG|-GACA CAaGCCAUGC A-CGCcg-gc gc|------- |-------(- ---)[----- 121 ---------- ---------- ---------g ---------- -gc-a-cggc gaa]------ 181 -----|---g gg|G-CGGA- CGGCU-CAGU ACAc-cggu- ugc-accc-- ----ugcgcg 241 gcgg<----- ---------- ---------- ---------- ---------- ---ucggggc 301 u>agccgg-a cacCGCUGG( -c-a-ac)CC AGCGa-caa- gacgag---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- --------cg cucaa----- ---------- ---------- ---------- 721 -------gcg cg-gccgggg a-gccgg--c gcga-cgcag cgaa------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -uggccgccu -gg|gcuucc gc|--GGC-A UCA--CCCC- --GCGGGCA- 1141 CG(-GUCGCG G)CGU-GCCC G-|GGGUC-U CAC|GCCU-G G-CGGA|GGA -U-(CAGG-) 1201 GUU-CGACU- CCG|GAGAGC G-GGCC(U-G AGAGAC)GGC CCGC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-C( ---ggg--)G 1321 CGCG-A-GGC -|A|GCGACG GGGC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- gccgg(---- ----gac)cc ggc------- ---------- 1501 ----gcgggc ----gugg-c -guac--agc c-----cc-a cgcgu-g--- ----->GAGU 1561 CGAG|GG-AA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 A-GGCGUC|G CGCGG--CGC UGCUG-CAG| UUA--AAACG UCCGGCGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ggccg-cccu g-ccgg-gag gaaagg--g- ga-gcgcucg aggcag-gcu ---------- 1801 ---------- ------c--- ---------- ---------- ---------- ---------- 1861 ---------- -----guugg accuaccgcc cgggacggcg ----agg--- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGAG|UGGG ---------- 3001 --CGGGGGCA UU|--AGUAC CGGACGG-GG -ACGG(GU-G AAA---)CAG G-AUGA-U-C 3061 CCUCC-GAG- A-CUCCCC-G CGGC(-GCAG )--GC|G--- UCUGCC-AG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCA ---CCUCUGU -CGA-U|CC- A-GGGCGAAG 3301 GCCGGGGGC- GAGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GGC-GU AAACGGUGCC GCC|CC|--- 3421 --ggcgc-cg gc-------- ----(----- gucg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---g-ucg-g -c-gccc--- ---------- ----caGG(- 3661 GAAA-)CCGG ucAGGC--uc cGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-GAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGUCUGCG|G CU-CAAUUUG (ACUCAA-CG )CGAA--CA- CCUUACCAGG CC[cgg-acg 4081 cgcg-gagga uc-----gac agc(c-gggu g-c)------ gcuuu----- cgu-gauc-g 4141 cgcggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UC CCA|GCCCG- U|GGC(-GCG 4261 A-)GCCGUC- -UGC(UU-CA CU)GCGACA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[ccacac ---------- ---------- ---------c cgc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --gugugg]- --|------- ---------- GACC-Gcc-g -c-c(----- 5041 --gggga-)g gcgg-A-GGA -AGG-CGGGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG-GCCGC A-CGCGUACU ACACU--G-G GCCGG----- ---------- 5281 ---(------ ----)[gcag cgcg------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---cgcg-cg gcc(gcga-) ggccgg--gc gacc---cgc --caag]--- ---------- 5461 -------ccg gcc-C-G--- UGGU-U-GGG AUCGCGGGC( UGGAA--C)G CCCCCGUG-A 5521 ACCCGG-AAU A--UCUCGUA GG-CGC-GUG (-UCCCCAA- )CGCGC-G-C -CGGAUGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCcgc- 5641 ggc-gagu-- ccc-cggga- gc-------- ---------- ---------- ---------- 5701 -------(cc cc---g)--- ---------- ---------- ---------- ---------- 5761 ---------g -ugaa-|cgg -cgacgagcc cu-ggc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --cuag~~~~ ~~~~~~~~|| ||| // LOCUS G.intest.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Giardia intestinalis. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X52949 ID GIRRNATR standard; DNA; INV; 5566 BP. XX AC X52949; XX DT 25-JUN-1990 (annotation) XX DE Giardia intestinalis DNA for rRNA tandem repeat unit XX KW 16S ribosomal RNA; 28S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal RNA; unidentified reading frame. XX OS Giardia intestinalis OC Eukaryota; Protozoa; Flagellata; Polymastigina. XX RN [1] (bases 1-5566) RA Upcroft P.; RT ; RL Submitted (03-MAY-1990) on tape to the EMBL Data Library by: RL Upcroft P., Queensland Institute of Medical Research, Bramston RL Terrace, Herston, Brisbane,, Queensland, Australia 4006. XX RN [2] (bases 1-5566) RA Healey A., Mitchell R., Upcroft J.A., Boreham P.F.L., Upcroft P.; RT "Complete nucleotide sequence of the ribosomal RNA tandem repeat RT unit from Giardia Intestinalis"; RL Nucleic Acids Res. 18:4006-4006(1990). XX CC *source: developmental stage=trophozoite; CC *source:cell line=BRIS/83/HEPU/106; CC *source: clone=pKG1, pKG2, pMG1, pMG2; CC The stop codon at position 3581-3583 in the coding region is CC believed exhibit alternative codon usage, since a protein has CC been identified from this ORF. XX FH Key From To Description FH FT RRNA 1 814 16S rRNA FT SITE 786 772 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 856 993 5.8S-like rRNA FT RRNA 1049 ? 28S rRNA FT SITE 1083 1092 put. yeast A box FT SITE 1085 1095 put. yeast autonomously replicating FT segment FT SITE 1095 1086 (C) put. drosophila T box FT SITE 1109 1118 put. drosophila A box FT SITE 1109 1118 put. yeast A box FT SITE 2676 2685 put. drosophila A box FT SITE 2676 2685 put. yeast A box FT SITE 2676 2667 (C) put. drosophila A box FT SITE 2680 2667 (C) put. yeast A box FT SITE 2682 2668 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 2683 2674 (C) put. drosophila T box FT SITE 2789 2799 put. yeast autonomously replicating FT segment FT SITE 2813 2799 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 2847 2856 put. drosophila A box FT SITE 2847 2856 put. yeast A box FT SITE 2855 2841 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 3277 3268 (C) put. drosophila T box FT SITE 3326 3338 put. drosophila T box FT SITE 3338 3329 (C) put. drosophila A box FT SITE 3338 3329 (C) put. yeast A box FT SITE 3396 3382 (C) put. drosophila topoisomerase II FT binding FT site FT SITE 3426 3417 (C) put. yeast A box FT SITE 3440 3451 put. drosophila T box FT SITE 3451 3441 (C) put. yeast A box FT SITE 3802 3816 put. drosophila topoisomerase II FT binding FT site FT SITE 3808 3799 (C) put. drosophila T box FT SITE 4127 4136 put. drosophila A box FT SITE 4127 4136 put. yeast A box FT SITE 4296 4309 put. drosophila topoisomerase II FT binding FT site FT CDS 4306 3448 (C) unidentified reading frame FT SITE 4310 4301 (C) put. drosophila T box FT PRM 4331 4326 (C) put. TATA box FT SITE 4367 4364 (C) 18bp proximal sequence element I FT SITE 4375 4371 (C) 18bp proximal sequence element II FT SITE 4407 4398 (C) put. upstream promoter FT SITE 4534 4548 put. drosophila topoisimerase II FT binding FT site FT SITE 4626 4637 put. yeast A box FT SITE 4642 4626 (C) put. drosophila T box FT SITE 4758 4768 put. yeast autonomously replicating FT segment FT SITE 4758 4768 put. yeast A box FT SITE 4758 4767 put. drosophila A box FT SITE 4772 4758 (C) put. drosophila T box FT RRNA 4929 5566 16S rRNA XX SQ Sequence 5566 BP; 842 A; 2040 C; 2151 G; 530 T; 3 other; BASE COUNT 228 a 531 c 553 g 139 t 4452 others ORIGIN 1 |--------- -----CAUCC GGU(CGA)UC CU|GCCGGA- G-CG-C-GAC --GCUCUCCC 61 CAAG|-GACG AA-GCCAUGC A-UGCcc-gc uc|------- |-------(- ---)[----- 121 ---------- ---------- ---------- ---------- --a-c-ccgg gac]------ 181 -----|---g cg|G-CGGA- CGGCU-CAGG ACAa-cggu- ugc-accc-- ----cccgcg 241 gcgg<----- ---------- ---------- ---------- ---------- ---ucccugc 301 u>agccgg-a caccgcugg( -c-a-ac)cc ggcgc-caa- gacgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- -----cgcgc aagggcgg-- ---------- ---------- ---------- 721 -----gcgc- --ccgcgggc g-agcag--c guga-cgcag cgac------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -ggcccgccc -gg|gcuucc gg|--GGC-A UCA--CCCG- --GUCGGCG- 1141 CG(-GUCGCG G)CGC-GCCG A-|GGGCC-C GAC|GCCU-G G-CGGA|GAA -U-(CAGG-) 1201 GUU-CGACU- CCG|GAGAGC G-GGCC(U-G CGAGAC)GGC CCGC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-C( ---ggc--)G 1321 CGCG-A-GGC -|A|GCGACG GGGA-GC--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- ---gc(---- ---gcga)gc ---------- ---------- 1501 ------GAgg ----cggg-c -ccac--agc c-----cc-c gccgc-g--- ----->GAGC 1561 CGAG|GG-CA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 G-AGCGUC|G CGCGG--CGC UGCUG-CAG| UUG--AAACG CCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gccccccgcc g-ccac-gag gaaacg--g- ga-gcgcucc aggcag-gcc ---------- 1801 ---------- ------c--- ---------- ---------- ---------- ---------- 1861 ---------- -----guugg acccgccgcg ugggaccgcg cagcgggc-c g--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- -------gc- gcgccgcggc a--gccccga gg--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGAG|CGGG ---------- 3001 --CGGGGGCA CC|--GGUAC CGGCCGG-GG -ACGG(GU-G AAA---)CAG G-AUGA-U-C 3061 CCGCC-GAG- A-CCGCCG-G CCGC(-GCAG )--GC|G--- CCUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCG ---CCUCUGU -CAA-U|MA- A-GGGCGAAG 3301 GCCGGGGGC- UAGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GCC-GU AAACGGUGCC GCC|CC|--- 3421 --gcggc-cg gcg------- ----(---cg cgcgucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --cg-ccg-g -c-cgcc--- ---------- ----caGG(- 3661 GAAA-)CCGG -gAGGC-ucc gGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-AAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUCUG (ACUCAA-CG )CGCG--CA- CCUCACCAGG CC[cgg-acg 4081 cgcg-gagga cc-----gac agc(c-gggc g-c)------ gcuuu----- cgc-gauc-g 4141 cgcggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GC-UC CCA|GCCCG- U|GGC(-GCG 4261 A-)GCCGUC- -UGC(UC-CA UU)GCGACA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[ccgcg- ---------- ---------- ---------g gcgc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---cgcgg]- --|------- ---------- GACG-Gcc-c -g-c(----- 5041 ---gcga-)g cggg-A-GGA -CGG-CGGGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG-GCCGC A-CGCGCGCU ACACU--G-G CGGGG----- ---------- 5281 ---(------ ----)[ccag ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---ccgg-cg cgc(gcga-) ggacgc--gc gg-------- ---agc]--- ---------- 5461 -------ccc cgc-C-G--- UGGC-C-GGG ACCGCGGGC( UGGAA--C)G CCCCCGCG-C 5521 ACCAGG-AAU G--UCUUGUA GG-CGC-CCG (-CCCCCAC- )CGCGC-G-C -CGGACGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCggc- 5641 ggc-gagc-- gcc-ccgga- ---------- ---------- ---------- ---------- 5701 -------(cg cg--c-)--- ---------- ---------- ---------- ---------- 5761 ---------- --gaa-|ggg -ccgcgagcc cc-cgc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----AuU-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --cuc~~~~~ ~~~~~~~~|| ||| // LOCUS G.intest.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Giardia intestinalis subsp. was Giardia lamblia. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis subsp. was Giardia lamblia. ORGANISM Giardia intestinalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09491 BASE COUNT 229 a 532 c 554 g 139 t 4449 others ORIGIN 1 |--------- -----CAUCC GGU(CGA)UC CU|GCCGGA- G-CG-C-GAC --GCUCUCCC 61 CAAG|-GACG AA-GCCAUGC A-UGCcc-gc uc|------- |-------(- ---)[----- 121 ---------- ---------- ---------- ---------- --a-c-ccgg gac]------ 181 -----|---g cg|G-CGGA- CGGCU-CAGG ACAa-cggu- ugc-accc-- ----cccgcg 241 gcgg<----- ---------- ---------- ---------- ---------- ---ucccugc 301 u>agccgg-a caccgcugg( -c-a-ac)cc ggcgc-caa- gacgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- -----cgcgc aagggcgg-- ---------- ---------- ---------- 721 -----gcgc- --ccgcgggc g-agcag--c guga-cgcag cgac------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -ggcccgccc -gg|gcuucc gg|--GGC-A UCA--CCCG- --GUCGGCG- 1141 CG(-GUCGCG G)CGC-GCCG A-|GGGCC-C GAC|GCCU-G G-CGGA|GAA -U-(CAGG-) 1201 GUU-CGACU- CCG|GAGAGC G-GGCC(U-G CGAGAC)GGC CCGC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-C( ---ggc--)G 1321 CGCG-A-GGC -|A|GCGACG GGGA-GC--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- ---gc(---- ---gcga)gc ---------- ---------- 1501 ------GAgg ----cggg-c -ccac--agc c-----cc-c gccgc-g--- ----->GAGC 1561 CGAG|GG-CA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 G-AGCGUC|G CGCGG--CGC UGCUG-CAG| UUG--AAACG CCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gccccccgcc g-ccac-gag gaaacg--g- ga-gcgcucc aggcag-gcc ---------- 1801 ---------- ------c--- ---------- ---------- ---------- ---------- 1861 ---------- -----guugg acccgccgcg ugggaccgcg cagcgggcgc g--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- -------gc- gcgccgcggc a--gccccga gg--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGAG|CGGG ---------- 3001 --CGGGGGCA CC|--GGUAC CGGCCGG-GG -ACGG(GU-G AAA---)CAG G-AUGA-U-C 3061 CCGCC-GAG- A-CCGCCG-G CCGC(-GCAG )--GC|G--- CCUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCG ---CCUCUGU -CAA-U|CA- A-GGGCGAAG 3301 GCCGGGGGC- UAGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GCC-GU AAACGGUGCC GCC|CC|--- 3421 --gcggc-cg gcg------- ----(---cg cgcgucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --cg-ccg-g -c-cgcc--- ---------- ----caGG(- 3661 GAAA-)CCGG -gAGGC-ucc gGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-AAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUCUG (ACUCAA-CG )CGCG--CA- CCUCACCAGG CC[cgg-acg 4081 cgcg-gagga cc-----gac agc(c-gggc g-c)------ gcuuu----- cgc-gauc-g 4141 cgcggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GC-UC CCA|GCCCG- U|GGC(-GCG 4261 A-)GCCGUC- -UGC(UC-CA UU)GCGACA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[ccgcg- ---------- ---------- ---------g gcgc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---cgcgg]- --|------- ---------- GACG-Gcc-c -g-c(----- 5041 ---gcga-)g cggg-A-GGA -CGG-CGGGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG-GCCGC A-CGCGCGCU ACACU--G-G CGGGG----- ---------- 5281 ---(------ ----)[ccag ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---ccgg-cg ccc(gcga-) ggacgc--gc gg-------- ---agc]--- ---------- 5461 -------ccc cgc-C-G--- UGGC-C-GGG ACCGCGGGC( UGGAA--C)G CCCCCGCG-C 5521 ACCAGG-AAU G--UCUUGUA GG-CGC-CCG (-CCCCCAC- )CGCGC-G-C -CGGACGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCggc- 5641 ggc-gagc-- gcc-ccgga- ---------- ---------- ---------- ---------- 5701 -------(cg cg--c-)--- ---------- ---------- ---------- ---------- 5761 ---------- --gaa-|ggg -ccgcgagcc cc-cgc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --UCUAG~~~ ~~~~~~~~|| ||| // LOCUS G.intest.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Giardia intestinlis (strain Portland 1) subsp. was G.lamblia (strain Portland 1). ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinlis (strain Portland 1) subsp. was G.lamblia (strain Portland 1). ORGANISM Giardia intestinlis (strain Portland 1). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M54878 LOCUS GIARRDAA 1453 bp ss-rRNA RNA 05-JUN-1991 DEFINITION G.lamblia small subunit ribosomal (16S-like) RNA. ACCESSION M54878 M19500 KEYWORDS 16S-like ribosomal RNA; ribosomal RNA small subunit. SOURCE G.lamblia (strain Portland 1) rRNA. ORGANISM Giardia lamblia Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Zoomastigophora; Diplomonadida; Diplomonadina; Hexamitidae. REFERENCE 1 (bases 1 to 1453) AUTHORS Sogin,M.L., Gunderson,J.H., Elwood,H.J., Alonso,R.A. and Peattie,D.A. TITLE Phylogenetic meaning of the kingdom concept: An unusual ribosomal RNA from Giardia lamblia JOURNAL Science 243, 75-77 (1989) STANDARD full automatic COMMENT NCBI gi: 174684 FEATURES Location/Qualifiers rRNA 1..1453 /product="16S-like ribosomal RNA" source 1..1453 /organism="Giardia lamblia" BASE COUNT 229 a 532 c 553 g 139 t ORIGIN BASE COUNT 229 a 532 c 553 g 139 t 4450 others ORIGIN 1 |--------- -----CAUCC GGU(CGA)UC CU|GCCGGA- G-CG-C-GAC --GCUCUCCC 61 CAAG|-GACG AA-GCCAUGC A-UGCcc-gc uc|------- |-------(- ---)[----- 121 ---------- ---------- ---------- ---------- --a-c-ccgg gac]------ 181 -----|---g cg|G-CGGA- CGGCU-CAGG ACAa-cggu- ugc-accc-- ----cccgcg 241 gcgg<----- ---------- ---------- ---------- ---------- ---ucccugc 301 u>agccgg-a caccgcugg( -c-a-ac)cc ggcgc-caa- gacgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- -----cgcgc aagggcgg-- ---------- ---------- ---------- 721 -----gcgc- --ccgcgggc g-agcag--c guga-cgcag cgac------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -ggcccgccc -gg|gcuucc gg|--GGC-A UCA--CCCG- --GUCGGCG- 1141 CG(-GUCGCG G)CGC-GCCG A-|GGGCC-C GAC|GCCU-G G-CGGA|GAA -U-(CAGG-) 1201 GUU-CGACU- CCG|GAGAGC G-GGCC(U-G CGAGAC)GGC CCGC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-C( ---GGC--)G 1321 CGCG-A-GGC -|A|GCGACG GGGA-GC--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- ---gc(---- ---gcga)gc ---------- ---------- 1501 ------gagg ----cggg-c -ccac--agc c-----cc-c gccgc-g--- ----->GAGC 1561 CGAG|GG-CA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 G-AGCGUC|G CGCGG--CGC UGCUG-CAG| UUG--AAACG CCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gccccccgcc g-ccac-gag gaaacg--g- ga-gcgcucc aggcag-gcc ---------- 1801 ---------- ------c--- ---------- ---------- ---------- ---------- 1861 ---------- -----guugg acccgccgcg ugggaccgcg cagcgggcgc g--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- -------gc- gcgccgcggc a--gccccga gg--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -agag|cggg ---------- 3001 --CGGGGGCA CC|--GGUAC CGGCCGG-GG -ACGG(GU-G AAA---)CAG G-AUGA-U-C 3061 CCGCC-GAG- A-CCGCCG-G CCGC(-GCAG )--GC|G--- CCUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCG ---CCUCUGU -CAA-U|CA- A-GGGCGAAG 3301 GCCGGGGGC- UAGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GCC-GU AAACGGUGCC GCC|CC|--- 3421 --gcggc-cg gcg------- ----(---cg cgcgucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --cg-ccg-g -c-cgcc--- ---------- ----caGG(- 3661 GAAA-)CCGG -gAGGC-ucc gGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-AAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUCUG (ACUCAA-CG )CGCG--CA- CCUCACCAGG CC[cgg-acg 4081 cgcg-gagga cc-----gac agc(c-gggc g-c)------ gcuuu----- cgc-gauc-g 4141 cgcggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GC-UC CCA|GCCCG- U|GGC(-GCG 4261 A-)GCCGUC- -UGC(UC-CA UU)GCGACA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[ccgcg- ---------- ---------- ---------g gcgc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---cgcgg]- --|------- ---------- gacg-gcc-c -g-c(----- 5041 ---gcga-)g cggg-A-GGA -CGG-CGGGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG-GCCGC A-CGCGCGCU ACACU--G-G CGGGG----- ---------- 5281 ---(------ ----)[ccag ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---ccgg-cg ccc(gcga-) ggacgc--gc gg-------- ---agc]--- ---------- 5461 -------ccc cgc-C-G--- UGGC-C-GGG ACCGCGGGC( UGGAA--C)G CCCCCGCG-C 5521 ACCAGG-AAU G--UCUUGUA GG-CGC-CCG (-CCCCCAC- )CGCGC-G-C -CGGACGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCggc- 5641 ggc-gagc-- gcc-ccgga- ---------- ---------- ---------- ---------- 5701 -------(cg cg--c-)--- ---------- ---------- ---------- ---------- 5761 ---------- --gaa-|ggg -ccgcgagcc cc-cgc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --ucua~~~~ ~~~~~~~~|| ||| // LOCUS G.intest.4 5903 bp RNA RNA 06-JAN-1988 DEFINITION Giardia intestinalis subsp. was Giardia lamblia. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis subsp. was Giardia lamblia. ORGANISM Giardia intestinalis. REFERENCE 1 AUTHORS No information JOURNAL June 6, 1988 STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X05396 LOCUS GLARRN58S 651 bp ds-DNA INV 15-MAR-1988 DEFINITION Giardia lamblia rDNA for 5.8S rRNA and part of LSRNA and SSRNA. ACCESSION X05396 Y00331 KEYWORDS 5.8S ribosomal RNA; ribosomal DNA ; ribosomal RNA large subunit; ribosomal RNA small subunit. SOURCE Giardia lamblia. ORGANISM Giardia lamblia Eukaryota; Protozoa; Flagellata; Polymastigina. REFERENCE 1 (bases 1 to 651; enum. 1 to 651) AUTHORS Boothroyd,J. TITLE ; JOURNAL Unpublished (1987) Standford U, Standford CA 94305, U.S.A.. STANDARD simple automatic REFERENCE 2 (bases 1 to 651; enum. 1 to 651) AUTHORS Boothroyd,J.C., Wang,A., Campbell,D.A. and Wang,C.C. TITLE An unusually compact ribosomal DNA repeat in the protozoan Giardia lamblia JOURNAL Nucl Acid Res 15, 4065-4084 (1987) STANDARD simple automatic COMMENT *source: strain=Portland 1; FEATURES from to/span description rRNA < 1 339 put. small subunit rRNA (3'end) rRNA 381 518 5.8S rRNA rRNA 574 > 651 large subunit rRNA BASE COUNT 91 a 261 c 246 g 53 t ORIGIN BASE COUNT 50 a 128 c 126 g 36 t 5563 others ORIGIN 1 |--------- n......... ...(...).. ..|......- .-........ --........ 61 ....|-.... ..-....... .-.....-.. ..|....... |.......(. ...)[..... 121 .......... .......... .......... ---------- -....-.... ...]...... 181 .....|.... ..|......- .....-.... ....-....- ...-....-- ----...... 241 ....<----- ---------- -----..... .......... .......... .......... 301 .>......-. .........( -......).. .........- .......... ....(....) 361 .......... .......(.. ..)..|.... ..<....... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... --........ --------.. .......... 601 ...------- ---------- ---....-.. ....--|... .........- -........- 661 .......... .--....... .........- ---------- ---------- ---------- 721 -----..... .......... .-.....--. ....-..... -----..... ..--...... 781 .......... ....------ ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- -----..... .......... ........-. .....----- 1021 -|...-.... -...-..... ........-- ---------- --........ .....-.... 1081 .........> .......... -..|...... ..|....... ...--..... .-.......- 1141 ..(....... .)........ .-|.....-. ...|....-. ......|... ..-(.....) 1201 ...-.....- ...|...... .-....(.-. ......)... ....-..... (....-)... 1261 .......-.- ---------| .......... .....-.... -........( ........). 1321 ....-.-... -|.|...... ....-..... .......... .(....)... .......... 1381 |....|.... .......... ........(. ......)... .......... .......... 1441 .......... .........- .....(..-- --.....).. .....-.... .-........ 1501 .......... ----...... -....-.... .-----..-. .-........ .---->.... 1561 ....|..-.. .-..-..... .-.(...-.. -....|..-. ..-..).... ..-|...... 1621 .-......|. .....--... .....-...| .......... .......... |......... 1681 .|........ .......... ..(.....). .......... .......... .|.......< 1741 .......... .-....-... ......--.- ..-....... ......-... ---------- 1801 ---------- ------.-.- ......-.-- -......... ......-... ..-------- 1861 .......... .-........ .......... .......... .......... .....----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------.... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .........- .......-.. .......... 2161 .......--- ---------- ---------- ---....... ....------ ---------- 2221 ----...... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... ....------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----...... .......... ..-....--. 2461 .......... ........-. .........- -------.-- ---------- -......... 2521 .......... ....-.--.. ......-... .......|.. .......-.. .......... 2581 ....------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------.... .......... ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --..|..... 2821 --.-...... .......... .--......- .......... .--....... ..--->.... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... ---------- 3001 -......... ..|--..... .......... -....(..-. ...---)... ........-. 3061 .....-...- .-......-. ....(-.... )--..|.... ......-..| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... ---....... -...-.|... .......... 3301 .........- .........( ....------ ---------- ---------- ---------- 3361 ---------- .....)..-. -.....|... .......-.. .......... ...|..|--- 3421 --........ ...-.-.-.. ...-(..... .........) .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... -----..... .......... .....----- ---....... 3601 .......... .......... ....-..... .......... .......... ........(- 3661 ....-).... .......... ....|-.|.- .......... ..--.....( --.....).. 3721 ...-...... -....--... ....|..-.. -..-.....- -....-.... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --.-..|-.. 4021 ........|. ..-....... (......-.. )....--... .......... ..[...-... 4081 ....-..... ..-----... ...(...... .-.)------ .....----- ...-....-. 4141 .......... .]........ |......... .....(.... )......... ...(....). 4201 ...|...... ...|...... ...-.-.... |...|..... ...|.....- .|...(.... 4261 .-)......- -...(..-.. ..)....... ..-....... ........|. .......... 4321 ......(... ..)[...-.. .......... .--....... .......... .......... 4381 ...--..... .---...... .......... ...-...... .......... -......... 4441 --........ .......... .......... .......... ..-------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ------.... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .........- ..-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------. ........]. ..|----... .......... ....-...-. ..-.(----- 5041 -......-). ...G-G-AGG ACGG-CGGGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-CGCC CUGG--C-GC A-CGCGCGCU ACACU--G-G CGGGG----- ---------- 5281 ---(------ ----)[ccag ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---ccgg-cg -cc(gcga-) ggacgc--gc gg-------- ---agc]--- ---------- 5461 -------ccc cgc-C-G--- UGGC-C-GGG ACGCG-GGC( UGGAA--C)G CCCCCGCG-C 5521 ACCAGG-AAU G--UCUUGU- GG-CGC-CCG (-CCCCCAC- )CGCGC-G-C -CGGACGCG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-CGCggc- 5641 ggc-gagc-- gcc-ccgga- ---------- ---------- ---------- ---------- 5701 -------(cg cg--c-)--- ---------- ---------- ---------- ---------- 5761 ---------- --gaa-|ggg -ccgcgagcc cc-cgc-g-c cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --CUCG.... .......~|| ||| // LOCUS G.muris1 5903 bp RNA RNA 30-JUN-1993 DEFINITION Giardia muris. ACCESSION No information KEYWORDS No information. SOURCE Giardia muris. ORGANISM Giardia muris. REFERENCE 1 AUTHORS van Keulen,H., Gutell,R.R., Campbell,S.R., Erlandsen,S.L. and TITLE The nucleotide sequence of the entire ribosomal DNA operon and JOURNAL J. Mol. Evol. 35, 318-328 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X65063 Sequence of Giardia muris rDNA repeat. H. van Keulen small subunit: 2098 - 3527 5.8S: 3555 ~ 3676 large subunit:3733 - 6421 BASE COUNT 350 a 345 c 501 g 236 t 4471 others ORIGIN 1 |--------- -----CAUCC GGU(UGA)UC CU|GCCGGA- G-UA-C-UAC --GCUA-CCC 61 CAAG|-GACA AAAGCCAUGC A-AGCgg-ac ac|------- |-------(- ---)[----- 121 ---------- ---------- ---------- ---------- -ga-g-guau gaa]------ 181 -----|---g ug|G-CGGA- CGGCU-CGGU ACAa-cggu- acg-aguc-- ----ugaccg 241 gggg<----- ---------- ---------- ---------- ---------- ---ugaaggc 301 u>agacgg-a uacCGCUGG( -c-a-ac)CC AGCGc-caa- gacgag---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- --------ug cucaa----- ---------- ---------- ---------- 721 -------gag cg-gggaagg a-aagca--c gcga-uggag cgaa------ ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -ugcccggau -ga|gguucc ga|--GGU-A UUA--CCUA- --GUCGGUA- 1141 GA(-GUAGUG G)UCU-ACGG A-|GGGGA-U GAU|GCCU-G G-CGGA|GGA -U-(CAGG-) 1201 GUU-UGACU- CCG|GAGAAC G-GGCC(U-G AGAGAC)GGC CCGU-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GG- AACUU-GCCC -AAUGCG-U( --gaag--)G 1321 CGUG-A-GGC -|A|GCAACG GGGG-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---------- cccau(---- ----gaa)au ggg------- ---------- 1501 ----aaGAcu ----gggg-g -guag--aug a-----cc-c cagca-c--- ----->AAGU 1561 CGAG|GG-AA AGGU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCGGC 1621 A-GGCGUC|G UACGG--CGC UGUUG-CAG| UUA--AAACG UCCGGAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 agacg-ucca g-ccgg-gag gaaaga--g- ga-gcgcuua aggcgg-gag ---------- 1801 ---------- ------u--- ---------- ---------- ---------- ---------- 1861 ---------- -----gagua cgagaaagcc cgggacggac augaagg--- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|----- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -UGAA|UGGG ---------- 3001 --UAAGGGCA UG|--UGUAU UGGUGGG-GG -ACGG(GU-G AAA---)UAG G-AUGA-U-C 3061 CGACC-AAG- A-CAGACA-A AGGC(-GUAG )--GC|A--- CUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CCA ---UAUCAGU -CGA-A|CC- A-GGACGAAG 3301 CCCGGGGGC- GAGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CA-C -CGUAU|UCC CG--GGC-GU AAACGAUGCC ACC|GA|--- 3421 --gagac-ug gc-------- ----(----c agguc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---g-uca-g -g-aucg--- ---------- ----aaGG(- 3661 GAAA-)CCGA ucAGGG-uac gGGC|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GG 3721 CUG-GAACUU -GAAG--GCA -UUG|AC-GG -AG-GGGUA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUUUG (ACUCAA-CG )CGAA--CA- CCUUACCAGG CC[cag-acg 4081 uacg-gagga uc-----gac ggu(u-gaga g-g)------ accuu----- cgu-gauc-g 4141 uacgag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC ACA|GCCCG- U|GGC(-UUG 4261 A-)GCCGUC- -UGC(UU-GA CU)GCGACA- AC-GAGCGAG ACCCU-AA|- ---------- 4321 ------(--- --)[cc---- ---------- ---------- ---------u ggau------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------gg]- --|------- ---------- GACC-Gcc-a -a-u(----- 5041 --gguga-)a uugg-A-GGA -AGG-UGGGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGCC CUGG-GCUGC A-CGCGUACU ACACU--G-U GGGGA----- ---------- 5281 ---(------ ----)[ugaa acca------ ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---cguc-ga guu(guga-) agcuug--au g--------a gaucaa]--- ---------- 5461 -------ccc cca-C-G--- UGGU-U-GGG AUCGUGGAC( UGGAA--C)G UCCUCGUG-A 5521 ACCUGG-AAU G--UCUAGUA GG-CGU-AGG (-UCAUCAA- )UCUAC-G-C -CGGAUACG- 5581 U-CCCUGCCC CU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC--UG GG-UCUucu- 5641 ggc-gagc-- ucc-uggga- gg-------- ---------- ---------- ---------- 5701 -------(ga ug--aa)--- ---------- ---------- ---------- ---------- 5761 ---------c -cgaa-|cag -ggacgaacc gc-gag-g-c uugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCGGA UGGAUCC--- 5881 --aucg~~~~ ~~~~~~~~|| ||| // LOCUS H.inflata 5903 bp RNA RNA 11-JAN-191 DEFINITION Hexamita inflata. ACCESSION No information KEYWORDS No information. SOURCE Hexamita inflata. ORGANISM Hexamita inflata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07836 LOCUS HXM16RR 1544 bp ss-rRNA RNA 01-JUN-1993 DEFINITION Hexamita inflata small subunit (16S-like) ribosomal RNA sequence. ACCESSION L07836 KEYWORDS 16S ribosomal RNA; small subunit ribosomal RNA. SOURCE Hexamita inflata (library: ATCC 50268) rRNA. ORGANISM Hexamita inflata Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Zoomastigophora; Diplomonadida; Diplomonadina; Hexamitidae. REFERENCE 1 (sites) AUTHORS Leipe,D.D., Gunderson,J.H., Nerad,T.A. and Sogin,M.L. TITLE Small subunit ribosomal RNA of Hexamita inflata and the quest for the first branch in the eukaryotic tree JOURNAL Mol. Biochem. Parasitol. 59, 41-48 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..1544 /organism="Hexamita inflata" /sequenced_mol="rRNA" /tissue_lib="ATCC 50268" BASE COUNT 389 a 341 c 447 g 359 t 8 others ORIGIN BASE COUNT 389 a 341 c 447 g 359 t 4367 others ORIGIN 1 |--------- -----AACCU GGU(CGA)UC CU|GCCAGR- A-GG-G--AA --GCUAAGAU 61 UAAG|-GAUU AA-GCCAUGC A-UGCC--AG GU|------- |-------(- ---)[----- 121 ---------- ---------- auaagcuaau ---------- -acac-aggu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAu-cagu- uga-aaug-- ----ucucgu 241 gcuu<----- ---------- ---------- ---------- ---------- ----uauucg 301 u>agucgg-c uaauacggg( -c-a-ac)uc ucuua-cua- aucgug---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ----cuucgu u--acaucgg uagugaga(- ---------- ---------- ---------- 721 -----gcga- -)ucucg--- ---------- ---------- -------ggu ug--auuuay 781 g-uuguaaaa auga------ ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- -----cuguu aggc------ ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -aggcacgau -ca|gcuucu ga|--CGC-A UCA--UUAA- --GUAGGAG- 1141 AA(-GUAAAG G)UUA-UCCU A-|UGAGU-U CAC|GCGU-A C--GGA|GAA -U-(UAGG-) 1201 GUU-CGACU- CCG|GAGAAU G-AGCA(U-G AGAGAC)GGC UCAU-AGUUC (UAAG-)GGA 1261 -GGCAGC-A- ---------| GGC-GC-GG- AAAUU-GCCC -AAUGUA-C( --aaac--)G 1321 UACG-A-GGC -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- ---cuugu-- ccggc(---- ---uuag)gc cggua-uuaa g--------- 1501 ----cugagy ----gaag-g -ygy---acc a-----ca-u cgcga-acgc ----->AAUU 1561 AGUG|GG-AG A-GC-A-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AU-|CACUGA 1621 U-AGCUUU|C UCUUA--CGU UGUUG-CAG| UUA--AAAAG CUCGUAGCCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 uu----guua g-cccc-gcg ugucac--u- uu-gagaaaa ucggag-ugu ---------- 1801 ---------- ------u-c- auuaca-g-- -ggaaaccgc ugcaca-gua ca-------- 1861 gcaaagaaug a-cauugcuc cccggcgacg ggggguacgg aguaua---- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -UGGC|GGCG ---------- 3001 --CGGGACUG AU|--AGUAU UUGGUGG-GG -ACAG(GU-G AAA---)UAG G-AUGA-U-C 3061 CACCA-AGG- A-CUUUCA-A CAGC(-GAAG )--GC|A--- GUCGGU-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCC ---GUCCAGY -UGG-U|CA- A-GAGCGAAA 3301 GUGUGAGGA- UAGACGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAAAC)CG-U -UUUAU|UUC AC--GCC-UU AAACGAUACC AUC|UC|--- 3421 --agaag-cg ggc-u----- ----(----- caga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-gu-ccg-c -a-ucuc--- ---------- ----aagg(- 3661 gaaa-)ccgc -aAGGU-uuc gGGU|-U|C- UGGGGGAAGU AU--GA-UU( --GCAA-)GA 3721 UUG-AAACUU -GAAG--GUA -UUG|AC-GG -AA-AGAUA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUCUGCG|G CU-CAAUUUG (ACUCAA-CA )CGCA--AA- UCUUACCAGA CC[cag-aug 4081 cuuu-acgga gc-----aac aga(uuaaga g-u)------ ucuuu----- ugc-gauu-g 4141 ggcagu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UC CUA|GUUCG- U|GGU(-GUA 4261 A-)ACUGUC- -UGC(CU-UA UU)GCGUUA- AC-GAGCGAG ACAAC-CA|- ---------- 4321 ------(--- --)[ccccca ---------- ---------- ---------g cc-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --uggggg]- --|------- ---------- GAGC-Gcc-u -g-c(----- 5041 --guuga-)g cagg-A-CGA AYGU-GGUUG CUCUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CACU CUGG-GCCGC A-CGCGUACU ACAAU--G-U CGGCU----- ---------- 5281 ---(------ ----)[rcac agccggu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucgcc-cg gcc(ugaa-) ggcccg--gc cauu---cgu gugaac]--- ---------- 5461 -------cgc cga-c-g--- UGGU-A-GGG AUCGGAGAU( UGGAAUUU)U UCUCCGUG-A 5521 ACGAGG-AAU G--UCUUGUA GG-UCU-GCG (-UUAUUAG- )CGCGG-G-C -UGACUAUG- 5581 U-CCCUGUCU UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAC-UUG GA-UGUUuu- 5641 ggu-gagu-- ugu-ccaga- gugc-gcgc- c--------- ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- ---------- ---------- 5761 -ggcau-gca -cgaa-|guu -cugcgaacc cc-aau-g-u cugg-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GC-------- -----U-G-C UGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Entamo 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS E.histol.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X65163 ID EHRRNA standard; RNA; INV; 6331 BP. XX AC X65163; XX DT 25-APR-1993 (Rel. 35, Created) DT 25-APR-1993 (Rel. 35, Last updated, Version 2) XX DE E.histolytica rRNA XX KW 18S ribosomal RNA; 28S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal RNA. XX OS Entamoeba histolytica OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Entamoebidae. XX RN [1] RP 1-6331 RA Bhattacharya S.; RT ; RL Submitted (17-MAR-1992) on tape to the EMBL Data Library by: RL S. Bhattacharya, Jawaharlal Nehru University, School of RL Enviromental Sciences, New Dehli, 110067, INDIA XX RN [2] RP 1-6331 RA Ramachandran S., Bhattacharya A., Bhattacharya S.; RT "Nucleotide sequence analysis of the rRNA transcription unit of a RT pathogenic Entamoeba histolytica strain HM-EIMSS"; RL Nucleic Acids Res. 21:2011-2011(1993). XX FH Key Location/Qualifiers FH FT source 1..6331 FT /organism="Entamoeba histolytica" FT /strain="HM 1-IMSS" FT /dev_stage="trophozoites" FT /clone="p(ssrnag),pHM-a,pLSrnaE1,plsrnaE2,plsrnaE3" FT /isolate="Clone-6" FT rRNA 522..2467 FT /product="18S ribosomal RNA" FT misc_feature 2468..2590 FT /note="transcribed spacer sequence 1" FT rRNA 2591..2740 FT /product="5.8S ribosomal RNA" FT misc_feature 2741..2865 FT /note="transcribed spacer sequence 2" FT rRNA 2866..6331 FT /product="28S ribosomal RNA" XX SQ Sequence 6331 BP; 2415 A; 813 C; 1302 G; 1792 T; 9 other; BASE COUNT 662 a 294 c 441 g 546 t 3960 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-UU-A-UAU --GCUGAUGU 61 UAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaagacc-aa ---------- -gu-a-ggau gaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAA-cagu- aau-aguu-- ----ucuuug 241 guua<----- ---------- ---------- ---------- ---------- ----guaaaa 301 u>ACAAGG-A UAGCUUUGU( -g-aaug)AU AAAGA-UAA- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaccaauga -ga|auuucu ga|--UCU-A UCA--AUCA- --GUUGGUA- 1141 GU(-AUCGAG G)ACU-ACCA A-|GAUUA-U AAC|GGAU-A A-CGAG|GAA -U-(UGGG-) 1201 GUU-CGACA- UCG|GAGAGG G-AGCU(U-U ACAGAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-SC-GU- AAAUU-ACCC -ACUUUC-G( ---aau--)U 1321 GAAG-A-GGU -|A|GUGACG ACAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUcuagagu- --uga(---- -guaaaa)uc a--au-ucuu g-aAGGAAU- 1501 ------GAgu ----aggag- -guaa-a-uu c-----uc-c uacGA-AAUC ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--AGU UGCUG-UGA| UUA--AAACG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaaaaug u-gguu-uua uacauu--uu ga-agacuuu auguaa-gua ---------- 1801 ---------- -----aa-g- uuucua-gaa -auguuaaau uaaaau-caa ag-------- 1861 aaggaaacaa u-ucaaguaa uugaguuguu auuacuuuga auaaaauaag guguu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaaa gcaaaacauu auguuaauga auauucaagc augggacaau gcugagggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gucaaua-ag acauuuc--- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---g-agaga a--ggauuaa aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAAU ---------- 3001 --UGGGGUGA UU|--CAGAA AAUAACG-GG -AGAG(GU-G AAA---)AUC C-AUGA-U-C 3061 GCUAU-AAG- A-UGCACG-A GAGC(-GAAA )--GC|A--- UUUCAC-UC| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUG ---UGUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACU-AU AAACGAUGUC AAC|CA|--- 3421 --aggau-ug gau-g-a--- ----(----- ---------) aauucagaug uacaaagaua 3481 gagaagc(au u)guuucuag aucugaguau aucaauauua cc-------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u u-gu-uca-g aa-cuua--- ---------- ----aaGA(- 3661 GAAA-)UCu- ugAGUU-uau gGAC|-u|u- caGGGGGAGU AU--GG-UC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAAG AC[cga-aca 4081 guag-aagga au-----gac aga(uuaaga g-u)------ ucuuu----- cau-gauu-u 4141 auuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -AGG(UU-AA UU)CCGGUA- AC-GAACGAG ACUGA-AA|- ---------- 4321 ------(--- --)[CCU-AU UAAUUAGuuu u--cugccua uaagacagaa augu-ucgca 4381 aga--acagg u---gc-gua a--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------g uaccacuucu uaaagggaca cauuucaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uugucc uau------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u uuaauugu]a gu|uaucuaa uuucgguua> GACC-Ucu-u -u-u(aacgu 5041 gggaaaaa)g aaaa-A-GGA AGCA-UUCAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CAUC UUGG-GCCGC A-CSCSCGCU ACAAU--G-g aguua----- ---------- 5281 ---(------ ----)[cuag agaguau--- ---------- -----uu--- --uaucauuu 5341 -acaccuuau uuauuaggc( --uuu)gucu aauaauuaag gauaguaagu ggug------ 5401 --uaccg-ag auu(gaaau) aguuaa--gg aaaa---cuc a--aaa]--- ---------- 5461 -------gaa cguac-a--- uGAC-A-GGG AUAAAUGAU( UGGAAUUA)U UUGUUUUG-A 5521 ACGAGG-AAU U--CCUUGUA AU-AUC-GAG (-UCAUUAA- )CUCGA-G-A -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug aa-uaaaga- 5641 ggu-gaaa-- uuc-uagga- uucu-gucu- ---------- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- ---------- 5761 ---agauaga -aaaa-|ugg -auuuaaauc uc-cuu-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS E.histol.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X64142 ID EHGRNA standard; DNA; INV; 1946 BP. XX AC X64142; XX DT 25-APR-1993 (Rel. 35, Created) DT 25-APR-1993 (Rel. 35, Last updated, Version 2) XX DE E.histolytica gene for small subunit rRNA XX KW small subunit ribosomal RNA gene. XX OS Entamoeba histolytica OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Entamoebidae. XX RN [1] RP 1-1946 RA Bhattacharya S.; RT ; RL Submitted (17-JAN-1992) on tape to the EMBL Data Library by: RL S. Bhattacharya, Jawaharlal Nehru University, School of RL Environmental Sciences, New Delhi 110 067, INDIA XX RN [2] RP 1-1946 RA Ramachandran S., Bhattacharya A., Bhattacharya S.; RT "Nucleotide sequence analysis of the rRNA transcription unit of a RT pathogenic Entamoeba histolytica strain HM-EIMSS"; RL Nucleic Acids Res. 21:2011-2011(1993). XX FH Key Location/Qualifiers FH FT source 1..1946 FT /organism="Entamoeba histolytica" FT /strain="HM1:IMSS" FT /dev_stage="Trophozoite" FT /clone="p(ssrnag), pHM-a" FT /isolate="6" FT rRNA 1..1946 FT /product="small subunit rRNA" XX SQ Sequence 1946 BP; 662 A; 294 C; 441 G; 546 T; 3 other; BASE COUNT 662 a 294 c 441 g 546 t 3960 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-UU-A-UAU --GCUGAUGU 61 UAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaagacc-aa ---------- -gu-a-ggau gaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAA-cagu- aau-aguu-- ----ucuuug 241 guua<----- ---------- ---------- ---------- ---------- ----guaaaa 301 u>ACAAGG-A UAGCUUUGU( -g-aaug)AU AAAGA-UAA- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaccaauga -ga|auuucu ga|--UCU-A UCA--AUCA- --GUUGGUA- 1141 GU(-AUCGAG G)ACU-ACCA A-|GAUUA-U AAC|GGAU-A A-CGAG|GAA -U-(UGGG-) 1201 GUU-CGACA- UCG|GAGAGG G-AGCU(U-U ACAGAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-SC-GU- AAAUU-ACCC -ACUUUC-G( ---aau--)U 1321 GAAG-A-GGU -|A|GUGACG ACAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUcuagagu- --uga(---- -guaaaa)uc a--au-ucuu g-aAGGAAU- 1501 ------GAgu ----aggag- -guaa-a-uu c-----uc-c uacGA-AAUC ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--AGU UGCUG-UGA| UUA--AAACG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaaaaug u-gguu-uua uacauu--uu ga-agacuuu auguaa-gua ---------- 1801 ---------- -----aa-g- uuucua-gaa -auguuaaau uaaaau-caa ag-------- 1861 aaggaaacaa u-ucaaguaa uugaguuguu auuacuuuga auaaaauaag guguu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaaa gcaaaacauu auguuaauga auauucaagc augggacaau gcugagggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gucaaua-ag acauuuc--- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---g-agaga a--ggauuaa aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAAU ---------- 3001 --UGGGGUGA UU|--CAGAA AAUAACG-GG -AGAG(GU-G AAA---)AUC C-AUGA-U-C 3061 GCUAU-AAG- A-UGCACG-A GAGC(-GAAA )--GC|A--- UUUCAC-UC| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUG ---UGUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACU-AU AAACGAUGUC AAC|CA|--- 3421 --aggau-ug gau-g-a--- ----(----- ---------) aauucagaug uacaaagaua 3481 gagaagc(au u)guuucuag aucugaguau aucaauauua cc-------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u u-gu-uca-g aa-cuua--- ---------- ----aaGA(- 3661 GAAA-)UCu- ugAGUU-uau gGAC|-u|u- caGGGGGAGU AU--GG-UC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAAG AC[cga-aca 4081 guag-aagga au-----gac aga(uuaaga g-u)------ ucuuu----- cau-gauu-u 4141 auuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -AGG(UU-AA UU)CCGGUA- AC-GAACGAG ACUGA-AA|- ---------- 4321 ------(--- --)[CCU-AU UAAUUAGuuu u--cugccua uaagacagaa augu-ucgca 4381 aga--acagg u---gc-gua a--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------g uaccacuucu uaaagggaca cauuucaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uugucc uau------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u uuaauugu]a gu|uaucuaa uuucgguua> GACC-Ucu-u -u-u(aacgu 5041 gggaaaaa)g aaaa-A-GGA AGCA-UUCAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CAUC UUGG-GCCGC A-CSCSCGCU ACAAU--G-g aguua----- ---------- 5281 ---(------ ----)[cuag agaguau--- ---------- -----uu--- --uaucauuu 5341 -acaccuuau uuauuaggc( --uuu)gucu aauaauuaag gauaguaagu ggug------ 5401 --uaccg-ag auu(gaaau) aguuaa--gg aaaa---cuc a--aaa]--- ---------- 5461 -------gaa cguac-a--- uGAC-A-GGG AUAAAUGAU( UGGAAUUA)U UUGUUUUG-A 5521 ACGAGG-AAU U--CCUUGUA AU-AUC-GAG (-UCAUUAA- )CUCGA-G-A -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug aa-uaaaga- 5641 ggu-gaaa-- uuc-uagga- uucu-gucu- ---------- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- ---------- 5761 ---agauaga -aaaa-|ugg -auuuaaauc uc-cuu-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS E.histol.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56991 ID EH16SRRNA standard; DNA; INV; 1947 BP. XX AC X56991; XX DT 29-OCT-1992 (Rel. 33, Created) DT 29-OCT-1992 (Rel. 33, Last updated, Version 1) XX DE E.histolytica gene for small subunit ribosomal RNA (16S-like) XX KW 16S ribosomal RNA homologue; ribosomal RNA; KW small subunit ribosomal RNA. XX OS Entamoeba histolytica OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Entamoebidae. XX RN [1] RP 1-1947 RA Sogin M.L.; RT ; RL Submitted (14-DEC-1990) on tape to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LAB, CENTER FOR MOL EVOLUTION, WOODS RL HOLE MA 02543, U S A XX RN [2] RA Sogin M.L., Edman U., Elwood H.E., Agabian N.; RT "Small subunit ribosomal RNA from Entamoeba histolytica"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA 1..1947 FT /product="small subunit ribosomal RNA (16S-like)" XX SQ Sequence 1947 BP; 662 A; 294 C; 445 G; 546 T; 0 other; BASE COUNT 662 a 294 c 445 g 546 t 3956 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-UU-A-UAU --GCUGAUGU 61 UAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaagacc-aa ---------- -gu-a-ggau gaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAA-cagu- aau-aguu-- ----ucuuug 241 guua<----- ---------- ---------- ---------- ---------- ----guaaaa 301 u>ACAAGG-A UAGCUUUGU( -g-aaug)AU AAAGA-UAA- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaccaauga -ga|auuucu ga|--UCU-A UCA--AUCA- --GUUGGUA- 1141 GU(-AUCGAG G)ACU-ACCA A-|GAUUA-U AAC|GGAU-A A-CGAG|GAA -U-(UGGG-) 1201 GUU-CGACA- UCG|GAGAGG G-AGCU(U-U ACAGAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -ACUUUC-G( ---aau--)U 1321 GAAG-A-GGU -|A|GUGACG ACAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUcuagagu- --uga(---- -guaaaa)uc a--au-ucuu g-aAGGAAU- 1501 ------GAgu ----aggag- -guaa-a-uu c-----uc-c uacGA-AAUC ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--AGU UGCUG-UGA| UUA--AAACG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaaaaug u-gguu-uua uacauu--uu ga-agacuuu auguaa-gua ---------- 1801 ---------- -----aa-g- uuucua-gaa -auguuaaau uaaaau-caa ag-------- 1861 aaggaaacaa u-ucaaguaa uugaguuguu auuacuuuga auaaaauaag guguu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaaa gcaaaacauu auguuaauga auauucaagc augggacaau gcugagggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gucaaua-ag acauuuc--- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---g-agaga a--ggauuaa aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAAU ---------- 3001 --UGGGGUGA UU|--CAGAA AAUAACG-GG -AGAG(GU-G AAA---)AUC C-AUGA-U-C 3061 GCUAU-AAG- A-UGCACG-A GAGC(-GAAA )--GC|A--- UUUCAC-UC| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUG ---UGUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACU-AU AAACGAUGUC AAC|CA|--- 3421 --aggau-ug gau-g-a--- ----(----- ---------) aauucagaug uacaaagaua 3481 gagaagc(au u)guuucuag aucugaguau aucaauauua cc-------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u u-gu-uca-g aa-cuua--- ---------- ----aaGA(- 3661 GAAA-)UCu- ugAGUU-uau gGAC|-u|u- caGGGGGAGU AU--GG-UC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAAG AC[cga-aca 4081 guag-aagga au-----gac aga(uuaaga g-u)------ ucuuu----- cau-gauu-u 4141 auuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -AGG(UU-AA UU)CCGGUA- AC-GAACGAG ACUGA-AA|- ---------- 4321 ------(--- --)[CCU-AU UAAUUAGuuu u--cugccua uaagacagaa augu-ucgca 4381 aga--acagg u---gc-gua a--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------g uaccacuucu uaaagggaca cauuucaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uugucc uau------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u uuaauugu]a gu|uaucuaa uuucgguua> GACC-Ucu-u -u-u(aacgu 5041 gggaaaaa)g aaaa-A-GGA AGCA-UUCAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CAUC UUGG-GCCGC A-CGCGCGCU ACAAU--G-g aguua----- ---------- 5281 ---(------ ----)[cuag agaguau--- ---------- -----uu--- --uaucauuu 5341 -acaccuuau uuauuaggc( --uuu)gucu aauaauuaag gauaguaagu ggug------ 5401 --uaccg-ag auu(gaaau) aguuaa--gg aaaa---cuc a--aaa]--- ---------- 5461 -------gaa cguac-a--- uGAC-A-GGG AUAAAUGAU( UGGAAUUA)U UUGUUUUG-A 5521 ACGAGG-AAU U--CCUUGUA AU-AUC-GAG (-UCAUUAA- )CUCGA-G-A -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug aa-uaaaga- 5641 ggu-gaaa-- uuc-uagga- uucu-gucu- ---------- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- ---------- 5761 ---agauaga -aaaa-|ugg -auuuaaauc uc-cuu-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS E.histol.4 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X61116 LOCUS ENH18SRRNA 1496 bp ss-mRNA INV 23-OCT-1991 DEFINITION E.histolytica mRNA for small subunit ribosomal RNA ACCESSION X61116 KEYWORDS small subunit ribosomal RNA. SOURCE Entamoeba histolytica RNA. ORGANISM Entamoeba histolytica Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; Entamoebidae. REFERENCE 1 (bases 1 to 1496) AUTHORS Que,X. and Reed,S.G. TITLE Nucleotide sequence of a small subunit ribosomal RNA (16S-like rRNA) gene from Entamoeba histolytica: differentiation of pathogenic from nonpathogenic isolates JOURNAL Nucleic Acids Res. 19, 5438-5438 (1991) STANDARD full automatic COMMENT *source: strain=SD4; From EMBL entry EH18SRRNA; dated 11-OCT-1991. FEATURES Location/Qualifiers prim_transcript 1..1496 /evidence=EXPERIMENTAL rRNA 1128..1136 /product="small subunit ribosomal RNA" BASE COUNT 520 a 223 c 345 g 408 t ORIGIN BASE COUNT 520 a 223 c 345 g 408 t 4407 others ORIGIN 1 |--------c caccg----- ---(---)UC C-|G-CAGU- A-UU-A-UAU --GCUGAUGU 61 UAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaagacc-aa ---------- -gu-a-ggau gaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAA-cagu- aau-aguu-- ----ucuuug 241 guua<----- ---------- ---------- ---------- ---------- ----guaaaa 301 u>ACAAGG-A UAGCUUUGU( -g-aaug)AU AAAGA-UAA- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aacca-uga -ga|auuucu ga|--UCU-A UCA--AUCA- --GUUGGUA- 1141 GU(-AUCGAG G)ACU-ACCA A-|G-UUA-U AAC|GGAU-A A-CGAG|GAA -U-(UGGC-) 1201 GUU-CGACA- UCG|GAGAGG G-AGCU(UUA CAGAUCGGAU UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -ACUUUC-G( ---aau--)U 1321 GAAG-A-GGU -|A|GUGACG ACAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUcuagagu- --uga(---- -guaaaa)uc a--au-ucuu g-aAGGAAU- 1501 ------GAGU ----AGGAG- -guaa-a-uu c-----uc-c uacGA-AAUC ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--AGU UGCUG-UGA| UUA--AAACG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaaaaug u-gguu-uua uacauu--uu ga-agacuuu auguaa-gua ---------- 1801 ---------- -----aa-g- uuucua-gaa -auguuaaau uaaaau-caa ag-------- 1861 aaggaaacaa u-ucaaguaa uugaguuguu auuacuuuga auaaaauaag guguu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaaa gcaaaacauu auguuaauga auauucaagc augggacaau gcugagggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gucaaua-ag acauuuc--- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---g-agaga a--ggauuaa aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAAU ---------- 3001 --UGGGGUGA UU|--CAGAA AAUAACG-GG -AGAG(GU-G AAA---)AUC C-AUGA-U-C 3061 GCUAU-AAG- A-UGCAgcgA GAGC(-GAAA )--GC|A-GA UUUCAC-UC| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUG ---UGUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACU-AU AAACGAUGUC AAC|CA|--- 3421 --aggau-ug gau-g-a--- ----(----- ---------) aauucagaug uacaaagaua 3481 gagaagc(au u)guuucaug aucugaguau aucaauauua cc-------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u u-gu-uca-g aa-cuua--- ---------- ----aaGA(- 3661 GAAA-)UCu- ugaGUU-uau ggac|-u|u- caGGGGGGAG UA--UGGUC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-G- 4021 AGCCUGC-|G CU-UAAUUUG (ACACAA-CA )CGGG--AAA -CU-ACCAAG AC[cga-aca 4081 guag-aagga au-----gaa cagauauaag g-ag------ uucuu----- uca-ugauuu 4141 auuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |--C|G--UC -UA|GU-GG- U|GGA(-GUG 4261 A-)UU-GUC- -AGG(UU-AA UU)CCGGUA- AC-GAACGAG ACUGA-AA|- ---------- 4321 ------(--- --)[CCU-AU UAAUUAGuuu u--cugccua uaagacagaa augu-ucgca 4381 aga--acagg u---gc-gua a--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------g uaccacuucu uaaagggaca cauuucaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uugucc uau------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u uuaauugu]a gu|uaucuaa uuucgguua> gacc-ucu-u -u-u(aacgu 5041 gggaaaa~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~--- ---------- -----~~~~~ ~~~~~~~~~~ 5341 -~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Euglen 5903 bp RNA RNA 29-JAN-1996 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS C.fascicul 5903 bp RNA RNA 11-JAN-1985 DEFINITION Crithidia fasciculata. ACCESSION No information KEYWORDS No information. SOURCE Crithidia fasciculata. ORGANISM Crithidia fasciculata. REFERENCE 1 AUTHORS No information JOURNAL Oct. 11 1985 STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Y00055 Phylo:Eukaryotes,Protozoan BASE COUNT 547 a 503 c 594 g 562 t 3697 others ORIGIN 1 |~~~~~~~~~ ~~~~~GAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUGG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG aguUGUCAG- --UCC(---- ---aucu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -ccca--ucc a-----aU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-uag guuugu--uc cu-ggucguc ccgucc-a-u ---------- 1801 ---------- -----gu-c- ggauu---ug -guggcccag gcccuu-gca gc-------- 1861 cc---gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagugu-ga cuaaagcagu 2161 cauccga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgaccagug cuuucacauc ---------- 2341 -------gua cuuucgugcg gugu------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----guggug cCUUUG-GAG G--GGUU-UA 2461 GUGCguuc-G G--Cucgggc u--------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -|-------- --------uc -gg-uCcg-- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uc|cgggc 2821 --g-uaacgc -cu-cuucaa cucacggcc- uc-----uag g--aaugaag GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuuugggucg gcu-gcggca 3481 ggguuuaccc cugugucuug cgccgugc-- ---ccgcuuu uaccaa-cuu acguaucuuu 3541 uccau----- ---------- ---------- ----ccggcc uuuaccggcc accuacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu UGAGGu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC Ag--uaggau u--caga-au ugcccauagg aaag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U Cucugcgg]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -auuugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uucu)gucg aa-------- ---------- ---------- 5401 -ccuacu-ug auc(aaaa-) gagug----g ggaaaccacg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGcA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgga- ug-------- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ---------- 5761 caucug-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-G-C UGUAGG(UGA A)CCUGCAGC UGGAUCA--- 5881 --UUUU~~~~ ~~~~~~~~|| ||| // LOCUS Lepto.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Leptomonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Leptomonas sp. ORGANISM Leptomonas sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53914 LOCUS TRLPSSRRG 2136 bp ds-DNA INV 22-MAY-1992 DEFINITION Leptomonas sp. small subunit ribosomal RNA gene ACCESSION X53914 KEYWORDS small subunit ribosomal RNA. SOURCE Leptomonas sp. DNA. ORGANISM Leptomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2136) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: stage=promastigote; *source: cell_line=L.Simpson line; From EMBL entry LSPSSRRG; dated 27-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2136 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 532 a 489 c 570 g 545 t ORIGIN BASE COUNT 532 a 489 c 570 g 545 t 3767 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaua<----- ---------- ---------- --aucuugcg gucu-ccgca a--------- 301 ->UAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUUG C-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-uggg c-ugug-uag guuugu--uc cu-gguaguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -gcccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcaugcca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagugu-ga cuaaagcagu 2161 cauucga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc guacc----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- -----uagug cggugugug- -------g-- ---------- -cgccuuug- 2521 --ggggguuu agug-c-guu cgguucgggc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ccgu 2821 -cu-gggcgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGCU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuuugggucg g-uugcggca 3481 ggguuuaccc ugugucuugc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 ccauuc---- ---------- ---------- ------ggcc uuuaccggcc acccaaggga 3601 auauccucag cac------g u-uu-ucu-u -u-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au uguccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -auuugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cag-- aug------- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ---------- 5761 caucug-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS E.monterog 5903 bp RNA RNA 11-JAN-191 DEFINITION Endotrypanum monterogei subsp. was Endotrypanum monterogeii. ACCESSION No information KEYWORDS No information. SOURCE Endotrypanum monterogei subsp. was Endotrypanum monterogeii. ORGANISM Endotrypanum monterogei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53911 ID EMSSRRNA standard; DNA; INV; 2135 BP. XX AC X53911; XX DT 24-APR-1992 (Rel. 31, Created) DT 24-APR-1992 (Rel. 31, Last updated, Version 1) XX DE E.monterogeii small subunit rRNA gene XX KW small subunit ribosomal RNA. XX OS Endotrypanum monterogeii OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; OC Kinetoplastida; Trypanosomatina; Trypanosomatidae. XX RN [1] RP 1-2135 RA Nelson K.; RT ; RL Submitted (11-JUL-1990) on tape to the EMBL Data Library by: RL Nelson K., Penn. State University, 208 Mueller Labs, Dept. of RL Biology, University Park, PA 16802, USA. XX RN [2] RA Nelson K., Beverley S.M.; RT "Evolution of nuclear small subunit ribosomal RNAs in RT kinetoplastid protozoans: New perspectives on the evolution of RT vertebrate parasitism"; RL Unpublished. XX CC *source: strain=LV88; CC *source: stage=promastigote; CC *source: cell_line=LV 88; XX FH Key Location/Qualifiers FH FT misc_feature 1..2135 FT /gene="nuclear small subunit ribosomal RNA" FT /note="transcribed region" XX SQ Sequence 2135 BP; 530 A; 494 C; 572 G; 539 T; 0 other; BASE COUNT 530 a 494 c 572 g 539 t 3768 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--ac ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUUG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaac)- 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUAGUCAG- --UCC(---- ---auuu)GG A--UU-GUCU --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--cc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagugu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagcg cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uccgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --ggugguuu agug-c-guu cggugggggc uccggc---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uccc 2821 -cc-ggucgu -ua-cgccau cccaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGGG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AU--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggucg gcuugcggca 3481 ggguuuaccc ugugcc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuaucu---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au uguacauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GCGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 cauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.donovani 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M80295 LOCUS LEIRRSSD 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania donovani small subunit ribosomal RNA. ACCESSION M80295 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania donovani (strain NLB065) rRNA. ORGANISM Leishmania donovani Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to those of Leishmania infantum and Leishmania chagasi" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 207 a 203 c 239 g 233 t ORIGIN BASE COUNT 207 a 203 c 239 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---cucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cgguacgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS E.gracilis 5903 bp RNA RNA 08-APR-1987 DEFINITION Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE Euglena gracilis. ORGANISM Euglena gracilis. REFERENCE 1 AUTHORS Sogin,M.L., Elwood,H.J. and Gunderson,J.H. TITLE Evolutionary diversity of eukaryotic small-subunit rRNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 83, 1383-1387 (1986) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: M12677 Phylo:Eukaryotes,Protozoan BASE COUNT 491 a 627 c 688 g 499 t 3598 others ORIGIN 1 |~~~~~~~~~ ~~~~~AAUCU GGU(UGA)UC CU|GCCAGC- A-GUCA-UAU --GCUUUGUU 61 CAAG|-GGCU AA-GCCAUGC A-CGUCU-CA Gc|------- |-------(- ---)[----- 121 ---------- --------gc aaacgg--ag ---------- -ug-a-cagu gga]------ 181 -----|---U CU|G-UGAA- UGGCU-CCUU ACAu-cagc- agu-cauc-- ----uacgug 241 auag<----- ---------- -----agugu gcuc-ggucc accugcaagg acc------- 301 c>CAUUGG-A CAUCCACCA( -A-AACC)UU GUGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ugaucgcaa -ga|gcuucu ga|--CCU-A UCA--GCUU- --GACUGUG- 1141 GU(-GUAUCG G)ACC-ACAG U-|GGCCU-U GAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACUAC (CAAG-)GUG 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-GCCC -CAUGCA-A( a-gacagu)C 1321 UGUG-A-GGC -|A|GCGACG AACA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAACCCCGU- -CGGC(---- cuuacgu)GC CG-AU-GGGG C-UUGGAAU- 1501 ------GGAC ----GCUAUC -CAAA--gac a-----gc-c G-UGA-GUAU C---->AACC 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCU|GC-G GU-AA)UUCC AG-|CUCCGA 1621 G-GGCGUA|U ACUAA--CAU UGCUG-CUG| UUA--AAACA CUUGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gccua-cggg c-ugca-ggu cugcug--g- gu-ggccggu uuguug-uuu ---------- 1801 ---------- ------c-u- cuggcc-a-- -gggaaggac cucggu-ucg ac-------- 1861 ccuguguugg g-cugcaacg gcuggacuca acccccagug guacgucccu gcgcc----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------cacc ucucagucga uggugagauc ugcuccu-gc caaaagucUG CUUCAcuGCA 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------G- GCcaaag-cg guuuaugccu 2161 cccgcac--- ---------- ---------- ---uggcaac ggac------ ---------- 2221 ----accaac aggggaccca gccucgagcu ggguagucua ccucuggucc accaccggag 2281 cccaccgucu ucgacacccu gGAAAACuca -gugugcuca aagcaucccc gcgacggcug 2341 aauguccauc cauggaaugu caag------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----gcaucg accaagugug gc-auug-ga 2461 ---guugugc ug-ccuuggg gcccacucug -------g-- ---------- -a-------- 2521 -caaccug-g uggu-g--ug uuccug-cag gaucaac|ag -gaucgu-ug -cccu----- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------g ccuggccuuc gggucucguc a--------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --gg|cuucg 2821 --u-ccccug -uc-ccugca g--cuugca- cccaucgauc g--uaagugA UG--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAC|UGUU ---------- 3001 --CGGGGUGA AA|--GAUAC GGGAGCG-CC -AGAG(GU-G AAA---)UUC U-UAGA-U-C 3061 GCUGC-CAG- A-UCCACU-G CAGC(-GAAG )--GC|G--- UUCUGC-AA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCA ---CGUCCGU -CGA-U|CA- A-GAAUGAGA 3301 GUUCGGGGA- GCAAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GACAC)CG-U -CGUAG|UCC GGccACU-GU AAACGAUGCC GGC|CA|--- 3421 --ggccuugg cag-a-g--- ----(-caag aauccuaga) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------c u-cu-guc-a gg-gcc---a cuccucccac a---acGA(- 3661 GAAA-)UCca -CAGCC-ugu gGGU|-U|C- AGGGGGGAGU AC--UG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUAUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GAA UGUUACCAGG UC[agg-acg 4081 caac-uggga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauc-u 4141 ugugga---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GC-UC CUG|AUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-GA UU)CCGAUA- AC-GAGUGAG ACAUC-UG|- ---------- 4321 ------(--- --)[CCUCCC Ac--uagccu g--aggcucg cauuugguag gguu-cggcu 4381 gcu--cggug g---cag--c ccccug(gca a)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- -------cag 4621 ggggagaugu accggugcau gcucccgaga gccuccag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucag- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGAGG]- --|------- ---------- UGCU-Gug-u -c-c(----- 5041 gccacaaa)g ggca-u-gcA UGcU-AGAGC CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 C-AGA-UGUC CUGG-GCCGC A-CGCGCACU ACAUU--G-U CACAG----- ---------- 5281 ---(------ ----)[ugaa ggugucg--- ---------- ---------- ---------- 5341 ---------- -acaugccc( -acuc)cggu g--------- ---------- ---------- 5401 -ggcccu-gg ccu(gaag-) aggcu----g ggaaauccug -caagc]--- ---------- 5461 -------cug uga-c-g--- uACU-G-GGG AUAGAUGGU( UGCAACUG)U CUGCCUUG-A 5521 ACGUGG-AAU G--CCUAGUA UG-CCU-GGG (-UCAUCAG- )CCCAG-A-C -CGAUUGUG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGC-U-A CC-GAU--GG UG-GCUgg-- 5641 aua-gagu-- cau-cagga- gguu-gugg- aggc-ggccu cu-------- ---------- 5701 ------c(gg ggca--)-g- ---------- ---------- ---------- --ua-gag-- 5761 cauccc-agc -cgaa-|auu -ggacgaugu cc-agc-c-a cuag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-G-C UGUAGG(UGA A)CCUGCAGC AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS B.caudatus 5903 bp RNA RNA 11-JAN-191 DEFINITION Bodo caudatus. ACCESSION No information KEYWORDS No information. SOURCE Bodo caudatus. ORGANISM Bodo caudatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53910 LOCUS BODSSRRNA 2012 bp ds-DNA INV 02-MAY-1992 DEFINITION B.caudatus small subunit rRNA gene ACCESSION X53910 KEYWORDS small subunit ribosomal RNA. SOURCE Bodo caudatus DNA. ORGANISM Bodo caudatus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae; Bodoninae. REFERENCE 1 (bases 1 to 2012) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=J. Hajduk; From EMBL entry BCSSRRNA; dated 24-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2012 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 514 a 463 c 534 g 501 t ORIGIN BASE COUNT 514 a 463 c 534 g 501 t 3891 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU AA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au aacugc--au ---------- -u--g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAU-caga- cgu-aauc-- ----ugccgc 241 aaua<----- ---------- ---------- --gcuuugcg gucu-ccgca ---------- 301 u>UAUUGG-A UAACUUGGC( -G-AAAC)GU CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- --cuuuugac -ga|acaacu gc|--CCU-A UCA--GCUug u-GUUGGCA- 1141 GU(-GUAGUG G)ACU-GCCA A-|GGCUU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaa-a)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG GGccugcag- -acgg(---- ---uuua)cc gu-au-gugg g-auacAAUG 1501 ---GGGGAUA ----UUUAAU -gcca--ucc a-----aU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--CGC UGCUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-uggc u-ugcg-aau ccgcug--cc cc-guccccu uuuuug-ggg ---------- 1801 ---------- -----gg-c- gccagc-gcu -cgcuugccg ugaaca-uuc ga-------- 1861 aacacaaaac a-cgggaaug guuccuuucc acccucgcau gccaugcaug cggaa----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------aggc gcccgugauu uuuacuguga cuaaaaaagc gcgaccaaag cagucguucg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ccuguau-uu ucaagcaugg 2161 gauaaca--- ---------- ---------- --aagcuaac cuuc------ ---------- 2221 ---ggauauu uccgguuucg gcuuuuguug guuuuaacag uccguacgag auuauaagug 2281 agugcgacac gcccuucacg ggggcuuccg ggcccgcaag gugcccgguu cauuucgcuu 2341 cagaaugaaa ga-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|UGU- ---------- 3001 --CGGGGGAG AA|--CGUAC UGAGGCG-UG -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCCUU-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACC-AC AAACGGUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-u--- ----(----- ---------) -uuuugguug uucgcggu-u 3481 gggcuugccc agcuuu--gc gauc------ ---gccaaua uuucaaauuu acgugcacgu 3541 uca------- ---------- ---------- ------acac cccucacggg gauuacggga 3601 acauccucag cac------g u-cu-uuu-a -u-uccuuc- ---------- ----acGC(- 3661 GAAA-)GCuu UGAGgu-uau aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aga 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 cuucaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaaa c--cagg-au uguccaaaag acag-caa-u 4381 ------cuuc u---guccug c-----(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------gcag u-caggaguu cc-------- auccaguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguuu- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCAG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 --uuugc-)a caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagauu--- ---------- ---------- ---------- 5341 ---------- ----cccgua acaaggagu- ---------- ---------- ---------- 5401 -ccugcu-ug auu(caaaa) gagcg----g ggaaccaccg gaauca]--- ---------- 5461 -------cau aga-c-c--- CGAU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU-gGA UG-GCGaa-- 5641 aua-cagg-- uug-uugga- cugg-c---- ---------- ---------- ---------- 5701 -------(uc cg--u-)--- ---------- ---------- ---------- ---------- 5761 -----g-ccg -ggaa-|gau -aaccgauau uu-aau-c-a uuag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.borreli 5903 bp RNA RNA 11-JAN-191 DEFINITION Trypanoplasma borreli. ACCESSION No information KEYWORDS No information. SOURCE Trypanoplasma borreli. ORGANISM Trypanoplasma borreli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L14840 ID TBRRSS standard; RNA; INV; 2025 BP. XX AC L14840; XX DT 27-APR-1993 (Rel. 35, Created) DT 27-APR-1993 (Rel. 35, Last updated, Version 1) XX DE Trypanoplasma borreli ribosomal RNA small subunit. XX KW ribosomal RNA small subunit. XX OS Trypanoplasma borreli OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; OC Kinetoplastida; Bodonidae. XX RN [1] RP 1-2025 RA Maslov D.A., Simpson L.; RT "Phylogenetic analysis of fresh water fish parasites Trypanoplasma RT borreli and Trypanosoma sp. El-CP based on the sequences of small RT subunit ribosomal RNA"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA 1..2025 FT /standard_name="SSU rRNA" FT /product="ribosomal RNA small subunit" FT /label=SSUrRNA FT source 1..2025 FT /organism="Trypanoplasma borreli" FT /strain="Pg-JH" FT /sequenced_mol="rRNA" XX SQ Sequence 2025 BP; 530 A; 456 C; 524 G; 515 T; 0 other; BASE COUNT 530 a 456 c 524 g 515 t 3878 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnCA-UAU --GCUUGUUU 61 CAAG|-GACU AA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au aacugc---u ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU AUCu-caga- uau-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AACUGG-A UAACUUGGC( -G-AAAA)GU CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|auaacu gc|--UCU-A UCA--GCUAG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGAA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaaaa)A 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG GCCUCCCAG- --Ac-(---- ---uucg)-G U--UU-GGGA ---GACAAUG 1501 ---GGGGAUA ----UUUAAU -GCCA--UCC A-----AA-A U-CGA-GUAU C---->AAUU 1561 GGAG|GA-CA A-GU-C-UG- U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--CGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-uggg c-uaug-uga ga-------- ---------- gcuucg-auc ---------- 1801 ---------- -----cg-u- ccuuca-ugg -gccucgacu cuucua-gcu c--------- 1861 -----gugaa c-auuc---g aaacaaguaa cacgggagug guuccuuccc uaucu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------cg-- ---cauguaa ugcaugcagg ggggcgcccg ugauuuuu-a cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugu-ga ccaaagcagu 2161 cauccga--- ---------- ---------- --ccugaauu acca------ ---------- 2221 ---agcaugg gauaacaaag cagcaa--cc uacgguacuu uaccguuaug gcuuuuguug 2281 guuuuaauag ucugugggac auuguaggaa ugugugacaa guggcgcucu uu-------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ugcg 2821 -cg-ccgccu -cc-ugggca accgggcuc- acuuuucucg g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAGU|UGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UUGAACG-UG -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCUCA-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACC-AC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg ggu-u-u--- ----(----- ---------) uuuugguggu ggcgugug-- 3481 ggguuuaccu cucacg--uc uc-------- ---cccaaau uuucaaauuu acgugcauuu 3541 ucaacu---- ---------- ---------- -------agc cuucaccggc uuuaacggga 3601 auauccucag cac------g u-uu-uuu-a -u-uucuucc ---------- ----acGC(- 3661 GAAA-)GCuu -GAGuu-aua -GUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 cuugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uaggaa c--cagg-au uguccaaaag acag-caa-u 4381 -------cuu u---cgcgua c-----(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------guac aaggaagcua c--------- cuccaguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguuu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCAG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 --cucuc-)g caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagauu--- ---------- ---------- ---------- 5341 ---------- ---c-c-cu( -uacc)ggag u--------- ---------- ---------- 5401 -ccugcu-ug auu(caaaa) gagcg----g ggaaucaccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cAAU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGU (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cugu-gcg-- ggu------- ---------- ---------- 5701 -------(uc ua--u-)--- ---------- ---------- ---------- ---------- 5761 au-ccg-ccg -gaaa-|gac -caccgauau uu-cuu-c-a uuag-AGGAA GC-AAAA-G- 5821 Unnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.cruzi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53917 LOCUS TRBSSRRNA 2240 bp ds-DNA INV 22-MAY-1992 DEFINITION T.cruzi small subunit ribosomal RNA gene ACCESSION X53917 KEYWORDS small subunit ribosomal RNA. SOURCE Trypanosoma cruzi DNA. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2240) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=Peru; *source: stage=promastigote; From EMBL entry TCSSRRNA; dated 27-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2012 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 563 a 504 c 587 g 586 t ORIGIN BASE COUNT 563 a 504 c 587 g 586 t 3663 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- --u-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg gucu-ccgca a--------- 301 ->CAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCCAG C-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaaaa)A 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGCCGACAG- --UGC(---- ---uuuu)GC A--UU-GUCG U-UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AA-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-aggg c-cucu-aag gc--gc--aa ug-guuuagu cccauc-cac ---------- 1801 ---------- -----uu-c- ggauug-gug -acccaugcc cuugug-guc c--------- 1861 ---gugaaca g-acauucag aaacaaaaaa cacgggagug guaccuuuuc ucuga----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uua- ucgcauguca ugcaugccag agggcgcccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugu-ga ccaaagcagu 2161 cauucga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucugggccac cguuucggcu uuuguugguu 2281 uuaaaagucc auuggagauu auggggcagu gugacaagcg gcuggguggu uauuccacac 2341 acauacacac ucccuuuuuu uugg------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----gacgug uuuguaugug uguggcacuc 2461 gucgccuuug ---ugggaaa uccgugugg- -------c-- ---------- -acuguuugu 2521 guuguuggca gacu-u-cgg ucuuacccuu cgcauc---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucac 2821 -au-guguca -ug-ccuucc cucaacuca- cggcauccag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGUGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-g-u--- ----(----- ---------) uuuuggucgu aggcgugguc 3481 ggguuugauu auuuuuuuuc aucccguucc ucgucucgcc aaugaauauu aaaauuuacg 3541 ugcauauucu uuuugguccu cguuuuu--- ------uuac gacgagggcc uuuaacggga 3601 auauccucag cac------g uuau-cug-a -c-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uaggau u--caga-au ugcccauagg auag-caa-u 4381 -----cccuu c---cgcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------acca agggggggcg gu-------- auucgcuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guauc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 --uuugc-)g caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -ucuu)gucg g--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g gaaaaccccg gaauca]--- ---------- 5461 -------cgu aga-c-c--- cACU-U-GGG ACCGAGUAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagu-cga-- gug------- ---------- ---------- 5701 -------(cu u-----)--- ---------- ---------- ---------- ---------- 5761 cacuug-acc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.cruzi.la 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M31432 LOCUS TRCRGSS 2319 bp ds-DNA INV 19-SEP-1990 DEFINITION T.cruzi ribosomal RNA small subunit gene. ACCESSION M31432 KEYWORDS ribosomal RNA. SOURCE T.cruzi (strain La Cruz, jalisco) DNA, clones pRTC[20,42]. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2319) AUTHORS Hernandez,R., Rios,P., Valdes,A.M. and Pinero,D. TITLE Primary structure of Trypanosoma cruzi small subunit ribosomal RNA coding region: Comparison with other trypanosomatids JOURNAL Mol. Biochem. Parasitol. 41, 207-212 (1990) STANDARD full staff_entry COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by R.Hernandez, 18-JAN-1990. FEATURES from to/span description rRNA 1 2319 ribosomal RNA small subunit BASE COUNT 583 a 512 c 612 g 612 t ORIGIN BASE COUNT 583 a 512 c 612 g 612 t 3584 others ORIGIN 1 |~~~~~~~~~ ~~~~~GAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -u--g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg gucu-ccgaa ---------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAG)CC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCCAG C-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaaaa)A 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGCCGACAG- --UGC(---- ---uuuu)GC A--UU-GUCG U-UUUCAAUG 1501 ---GGGGAUA ----UU-AAA -ccca--ucc A-----AA-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-aggg c-cucu-aag gcgcaa--u- g---guuuag ucccau-cca ---------- 1801 ---------- -----cu-u- cggauu-ggu -gacccaugc ccuugu-ggu cc-------- 1861 gugaacagac a-uauucaga aacaaaaaac acgggagugg uaccuuuucu gauua----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------u--- -cgcauguca ugcaugccag agggcgcccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugu-ga ccaaagcagu 2161 cauucga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag-ccu cuggggccac cguuucggcu uuuguugguu 2281 uuaaaagucc auuggagauu auggggcagu gugacaagcg gcuggguggu uauuccacac 2341 acacacgcac acuccuuuuu ugga------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----uguugu gucuucugug ugugugcgaa 2461 cucgucgccu uu-gugggaa auccaggug- -------u-- ---------- -ggcacuugu 2521 uugguguugu uggc-a-ga- cuucggucuu |gccuuccaa -uguuuc--- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|acaug 2821 --u-gucaug -cc-uucccu c--aacuca- cggcauccag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGUGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-g-u--- ----(----- ---------) uuuuggucgu aggcgugguc 3481 gggcuugauu auauuauuuu ucaucccguu ccucgucucg ccaaugaaua uauuaaauuu 3541 acgugcauau ucuuuuuggu cuucguuuuu -----uuuac ggcgaggacc uuuaacggga 3601 auauccucag cac------g uuau-cug-a -c-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu UGAGGu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC Ag--uaggau u--caga-au ugcccauagg auag-caa-u 4381 -----cccuu c---cgcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aagggggggc gg-------u auucgcuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guauc- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CucugCGG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 --uuugc-)g caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ----acgac( -ucuu)gucg a--------- ---------- ---------- 5401 -ccuacu-ug auc(aaaa-) gagug----g gaaaaccccg gaauca]--- ---------- 5461 -------cgu aga-c-c--- cACU-U-GGG ACCGAGUAU( UGCAAUUA)U UGGUCGCGcA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--ga ug-gugca-- 5641 aua-cagg-- uga-ucgga- cagu-cgag- ug-------- ---------- ---------- 5701 -------(cu u-----)--- ---------- ---------- ---------- ---------- 5761 cacuug-acc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-G-C UGUAGG(UGA A)CCUGCAGC UGGAUCA--- 5881 --UUUU~~~~ ~~~~~~~~|| ||| // LOCUS T.brucei 5903 bp RNA RNA 13-JAN-1985 DEFINITION Trypanosome brucei. ACCESSION No information KEYWORDS No information. SOURCE Trypanosome brucei. ORGANISM Trypanosome brucei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M12676 Phylo:Eukaryotes,Protozoan BASE COUNT 526 a 552 c 606 g 567 t 3652 others ORIGIN 1 |~~~~~~~~~ ~~~~~GAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -u--g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 caaa<----- ---------- ---------- --auuuugcg gucu-ccgca ---------- 301 u>UACUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuacugac -ga|acaacu gc|--CCU-A UCA--GCCAG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-G( aaaaaaua)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG agcCGACCG- --UGC(---- -ccuagu)GC A--UG-GUUG u-UUUCAAUG 1501 ---GGGGAUA ----CUCAAA -ccca--ucc a-----aU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-cacg-uag uuuugu--gc cg-ugccagu cccguc-cac ---------- 1801 ---------- -----cu-c- ggacgu-guu -uugacccac gcccuc-gug gc-------- 1861 cc---gugaa c-acacucag auacaagaaa cacgggagcg guuccuccuc acuuu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ca-- -cgcauguca ugcaugcgag ggggcguccg ugaauuuu-a cugugaccaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugc-ga ccaaagcagu 2161 cugccga--- ---------- ---------- --cuugaauu acaa------ ---------- 2221 ---agcaugg gauaacgaag caucag--cc cuggggccac cguuucggcu uuuguugguu 2281 uuagaagucc uugggagauu auggggccgc gugccuuggg ucgguguuuc ---------- 2341 ---------- ---gugucuc auuu------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----uugugg cgcgcacauu cggcucuucg 2461 ugauguuuuu u--------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---|------ ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------u -ac-auucau ugcgacgcg- cggcuuccag g--aaugaag GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGUGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGGGA- UCAAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACCAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-a-c--- ----(----- ---------) aucauugggu gcccgugugg 3481 cggccuuuug ugccgacccu cggccccaau uuauuuauca auuuacgugc cuauucuauc 3541 acccccgguu cccucuuuug a--------- -----gguuc uuccgggguu uuuuacggga 3601 auauccucag cac------g u-uu-cuu-a -c-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu GGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uggagu g-u)------ ucuuu----- cuc-gauc-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC Ag--uaggug c--cggg-au uguccacaca ggac-agcag 4381 uc----ccuc c---ggcggg ga----(uuu u)u------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 -----ucccc aacggugguc gucauccuuc uuuuuaca-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggccc- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CucugCGG]- --|------- ---------- GAuu-ccu-u -g-c(----- 5041 uuuucgc-)g caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagagu--- ---------- ---------- ---------- 5341 ------ccga gcggcacuu( --cac)aaug ucgcuc---- ---------- ---------- 5401 --ccgcu-ug auc(aaaa-) gagcg----g ggaaaccacg gaauca]--- ---------- 5461 -------cgu aga-c-c--- cACU-U-GGG ACCGAGUAU( UGCAAUUA)U UGGUCGCGcA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- ccgu-cgcu- cg-------- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ---------- 5761 cgggcg-acc -gaaa-|guu -caccgauau ug-cuu-c-a auag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-G-C UGUAGG(UGA A)CCUGCAGC UGGAUCA--- 5881 --UUU~~~~~ ~~~~~~~~|| ||| // LOCUS H.muscarum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L18872 LOCUS HEMRRSSU 2112 bp ss-rRNA RNA 01-JUN-1993 DEFINITION Herpetomonas muscarum muscarum ribosomal RNA small subunit. ACCESSION L18872 KEYWORDS ribosomal RNA small subunit. SOURCE Herpetomonas muscarum (sub_species muscarum) rRNA. ORGANISM Herpetomonas muscarum Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae. REFERENCE 1 (bases 1 to 2112) AUTHORS Maslov,D.A. and Simpson,L. TITLE Phylogenetic relationships among kinetoplastid protozoa JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..2112 /product="ribosomal RNA small subunit" /gene="rRNA SSU" /label=SSUrRNA /note="putative" source 1..2112 /organism="Herpetomonas muscarum" /sub_species="muscarum" /sequenced_mol="rRNA" BASE COUNT 530 a 473 c 567 g 542 t ORIGIN BASE COUNT 530 a 473 c 567 g 542 t 3791 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--ac ---------- -uu-g-cag- gag]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --auuuugcg gucu-ccgca a--------- 301 ->CAUUGG-A UAACUUGGC( -G-AAAA)GC -AAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCU-G U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaaaaaac)- 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG GGUUGUCAG- --UCC(---- ---aauu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauugagggc c-guga-agg gcuauu--uu cu-cugguaa guccug-ucc ---------- 1801 ---------- -----aa-a- ccggau-uag -gacccagac ccuugc-ggu cc-------- 1861 --gugaacga a-guuuucgg auacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuu-a cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagugu-ga cuaaagcagu 2161 cguucga--- ---------- ---------- --cuugaauu agca------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc uuuaggcuac cguuucggcu uuuguugguu 2281 uuagaugucu auuggagauu augagaccgu gcgacaagcg uuccgugcuu gc-------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- acug-g-cgc cugugucugg guucaa---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ccgg 2821 -gu-uuucuc -gg-cgccca gucacuucg- cggucuucag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGU- ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UG -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGCGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC GC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-g-u--- ----(----- ---------) uugguugcgc uccggaggcu 3481 uccuugugaa guccuucggg ccaccguuac uaauuuacgu gcauauuccu uauaggcccu 3541 gccuuc---- ---------- ---------- ------acgg guaggugucc uccuacgcga 3601 auauccucag cac------g u-uu-cuu-c -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu -GAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au uguccauaga auag-caa-u 4381 ------cuug c---cacuag g-----(uuc u)u------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------ccua gcgguaagca gc-------- auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u -g-u(----- 5041 uucuugc-)a caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuc)gucg g--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccacg gaauca]--- ---------- 5461 -------cau aga-c-cc-- gUUU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACUAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-ugga- -cg------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 cguccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a uuag-AGGAA GC-AAAA-G- 5821 Unnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.adleri 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania adleri. ACCESSION No information KEYWORDS No information. SOURCE Leishmania adleri. ORGANISM Leishmania adleri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M80291 LOCUS LEIRRSSA 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania adleri small subunit ribosomal RNA. ACCESSION M80291 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania adleri (strain NLB148) rRNA. ORGANISM Leishmania adleri Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania tarentolae" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 203 c 242 g 232 t ORIGIN BASE COUNT 205 a 203 c 242 g 232 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaaggc uuucccaucg caac------ 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuuga 2521 --ggggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccagcuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.aethiopi 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania aethiopica subsp. was Leishmania aethiopia. ACCESSION No information KEYWORDS No information. SOURCE Leishmania aethiopica subsp. was Leishmania aethiopia. ORGANISM Leishmania aethiopica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81428 LOCUS LEIRRSSAE 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania aethiopia small subunit ribosomal RNA. ACCESSION M81428 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania aethiopia (strain NLB161) rRNA. ORGANISM Leishmania aethiopia Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania Leishmania tropica, strain NLB162, and Leishmania major, strain NLB765." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 204 c 240 g 233 t ORIGIN BASE COUNT 205 a 204 c 240 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaccuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.amazonen 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania amazonensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania amazonensis. ORGANISM Leishmania amazonensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53912 LOCUS LEINSSRRNA 2138 bp ds-DNA INV 02-MAY-1992 DEFINITION L.amazonensis nuclear small subunit ribosomal RNA gene ACCESSION X53912 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania amazonensis DNA. ORGANISM Leishmania amazonensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2138) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=LTB0016; *source: stage=promasigote; *source: cell_line=LTB0016; From EMBL entry LANSSRRNA; dated 24-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2138 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 536 a 495 c 571 g 536 t ORIGIN BASE COUNT 536 a 495 c 571 g 536 t 3765 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --accuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUGG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 -gagggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au ugcccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.brazil.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania braziliensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania braziliensis. ORGANISM Leishmania braziliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53913 LOCUS LEISSRRNA 2139 bp ds-DNA INV 02-MAY-1992 DEFINITION L.braziliensis small subunit ribosomal rRNA gene ACCESSION X53913 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania brasiliensis DNA. ORGANISM Leishmania brasiliensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2139) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=m4147; *source: stage=promastigote; *source: cell_line=m4147; From EMBL entry LBSSRRNA; dated 24-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2139 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 535 a 495 c 572 g 536 t 1 others ORIGIN BASE COUNT 535 a 495 c 572 g 536 t 3765 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUGG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA U-UUNCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--cc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauucga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 -gagggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au uguccauagg auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.brazil.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania braziliensis subsp. was Leishmania brasiliensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania braziliensis subsp. was Leishmania brasiliensis. ORGANISM Leishmania braziliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81416 LOCUS LEIRRSSBG 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania brasiliensis guanensis small subunit ribosomal RNA. ACCESSION M81416 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania brasiliensis (sub_species guanensis) rRNA. ORGANISM Leishmania brasiliensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to that of Leishmania brasiliensis brasiliensis, strain WR675, and Leishmania brasiliensis panamensis" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 204 a 205 c 243 g 231 t ORIGIN BASE COUNT 204 a 205 c 243 g 231 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagcg cucucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgggc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccagcuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~--- -|----|--- 5221 -------~~~ ~~~~~~~~~~ ~-~-~~~~~- ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~------~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 -~~~~~--~~ ~--~~~~~~- ~--~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~-~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~-~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.brazil.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania braziliensis subsp. was Leishmania brasiliensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania braziliensis subsp. was Leishmania brasiliensis. ORGANISM Leishmania braziliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81421 LOCUS LEIRRSSBP 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania brasiliensis panamensis small subunit ribosomal RNA. ACCESSION M81421 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania brasiliensis (sub_species panamensis) rRNA. ORGANISM Leishmania brasiliensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to that of Leishmania brasiliensis brasiliensis, strain WR675, and Leishmania brasiliensis guanensis" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 204 a 205 c 243 g 231 t ORIGIN BASE COUNT 204 a 205 c 243 g 231 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagcg cucucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgggc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccagcuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.brazil.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Leishmania braziliensis subsp. was Leishmania brasiliensis. ACCESSION No information KEYWORDS No information. SOURCE Leishmania braziliensis subsp. was Leishmania brasiliensis. ORGANISM Leishmania braziliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M80292 LOCUS LEIRRSSB 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania brasiliensis brasiliensis small subunit ribosomal RNA. ACCESSION M80292 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania brasiliensis (strain WR675, sub_species basiliensis) rRNA. ORGANISM Leishmania brasiliensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to the sequences of Leishmania brasiliensis guanensis and Leishmania brasiliensis panamensis." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 204 a 205 c 243 g 231 t ORIGIN BASE COUNT 204 a 205 c 243 g 231 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagcg cucucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgggc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccagcuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.chagasi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81430 LOCUS LEIRRSSCH 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania chagasi small subunit ribosomal RNA. ACCESSION M81430 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania chagasi rRNA. ORGANISM Leishmania chagasi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania donovani, strain NLB065, and Leishmania infantum." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 207 a 203 c 239 g 233 t ORIGIN BASE COUNT 207 a 203 c 239 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---cucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cgguacgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.infantum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81429 LOCUS LEIRRSSIN 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania infantum small subunit ribosomal RNA. ACCESSION M81429 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania infantum rRNA. ORGANISM Leishmania infantum Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania donovani, strain NLB065, and Leishmania chagasi." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 207 a 203 c 239 g 233 t ORIGIN BASE COUNT 207 a 203 c 239 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---cucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cgguacgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.major.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53915 LOCUS LEISSRRNB 2137 bp ds-DNA INV 22-MAY-1992 DEFINITION L.major small subunit ribosomal RNA gene ACCESSION X53915 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania major DNA. ORGANISM Leishmania major Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2137) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=LT252; *source: stage=promastigote; From EMBL entry LMSSRRNA; dated 27-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2137 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 536 a 494 c 570 g 537 t ORIGIN BASE COUNT 536 a 494 c 570 g 537 t 3766 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUGG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au ugcccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc cg-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.major.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81427 LOCUS LEIRRSSMJ 882 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania major small subunit ribosomal RNA. ACCESSION M81427 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania major (strain NLB765) rRNA. ORGANISM Leishmania major Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 882) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..882 /note="This sequence is identical to that of Leishmania tropica, strain NLB162, and Leishmaniaaethiopia, starin NLB161." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 204 c 240 g 233 t ORIGIN BASE COUNT 205 a 204 c 240 g 233 t 5021 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaccuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.mexica.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M80293 LOCUS LEIRRSSM 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania mexicana amazonensis small subunit ribosomal RNA. ACCESSION M80293 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania mexicana (strain LTB16, sub_species amazonensis) rRNA. ORGANISM Leishmania mexicana Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to that of Leismania mexicana mexicana" /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 204 c 241 g 233 t ORIGIN BASE COUNT 205 a 204 c 241 g 233 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaccuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.mexica.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81422 LOCUS LEIRRSSMA 883 bp ss-rRNA RNA 31-MAR-1992 DEFINITION Leishmania mexicana mexicana small subunit ribosomal RNA ACCESSION M81422 KEYWORDS ribosomal RNA small subunit. SOURCE Leishmania mexicana (sub_species mexicana) rRNA. ORGANISM Leishmania mexicana Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 883) AUTHORS Ebeling,S.B., Kroon,C., Schoone,G.J. and Van Eys,G. TITLE Sequence analysis of small subunit ribosomal RNA genes and its use for detection and identification of Leishmania parasites JOURNAL Mol. Biochem. Parasitol. 51, 133-142 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..883 /note="This sequence is identical to that of Leishmania mexicana amazonensis, strain LTB16." /product="small subunit ribosomal RNA" /gene="small subunit rRNA" BASE COUNT 205 a 204 c 241 g 233 t ORIGIN BASE COUNT 205 a 204 c 241 g 233 t 5020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~CC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--uc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuugg 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccugcggca 3481 ggguuuaccc uguguccagc accgcgc--- ---ccgcuuu uaccaccuua cguauccuuu 3541 cuauuc---- ---------- ---------- ------ggcc uuuaccggcc acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-G~ -~~-~~~~~- -~~~~-~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|-~~ 4021 ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~~~~~ ~~[~~~-~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~(~~~~~~ ~-~)------ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~- ~|~~~(~~~~ 4261 ~-)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~(~~~ ~)~-~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~-~~ ~~~(~~~~~) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.tarent.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M84225 LOCUS LEIRGSSRRA 2195 bp ds-DNA INV 14-JAN-1992 DEFINITION L.tarentolae small subunit rRNA gene. ACCESSION M84225 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania tarentolae DNA. ORGANISM Leishmania tarentolae Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2195) AUTHORS Briones,M.R., Nelson,K., Beverley,S.M., Affonso,H.T., Camargo,E.P. and Floeter-Winter,L.M. TITLE Leishmania tarentolae taxonomic relatedness inferred from phylogenetic analysis of the small subunit ribosomal RNA gene JOURNAL Unpublished (1992) STANDARD full staff_review FEATURES Location/Qualifiers prim_transcript 1..2195 /function="small subunit rRNA" /product="small subunit rRNA" /evidence=EXPERIMENTAL /citation=[1] /partial rRNA 1..2195 /product="small subunit rRNA" /evidence=EXPERIMENTAL BASE COUNT 550 a 502 c 588 g 555 t ORIGIN BASE COUNT 550 a 502 c 588 g 555 t 3708 others ORIGIN 1 |~~~~~~~~~ ~~~~~GAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUUG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--cc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccagcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuu---- ---------- ---------- ------ggcc uuuaccggcu acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au ugcccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc ug-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-G-C UGUAGG(UGA A)CCUGCAGC UGnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.tarent.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53916 LOCUS LEISSRRNC 2137 bp ds-DNA INV 22-MAY-1992 DEFINITION L.tarentolae small subunit ribosomal RNA gene ACCESSION X53916 KEYWORDS small subunit ribosomal RNA. SOURCE Leishmania tarentolae DNA. ORGANISM Leishmania tarentolae Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2137) AUTHORS Nelson,K. and Beverley,S.M. TITLE Evolution of nuclear small subunit ribosomal RNAs in kinetoplastid protozoans: New perspectives on the evolution of vertebrate parasitism JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=LTC-1; *source: stage=promastigote; *source: cell_type=LRC-1; From EMBL entry LTSSRRNA; dated 27-APR-1992. FEATURES Location/Qualifiers misc_feature 1..2137 /note="transcribed region" /gene="nuclear small subunit ribosomal RNA" BASE COUNT 536 a 491 c 570 g 540 t ORIGIN BASE COUNT 536 a 491 c 570 g 540 t 3766 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--au ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaaa<----- ---------- ---------- --aucuugcg guuu-ccgca a--------- 301 ->AAUUGG-A UAACUUGGC( -G-AAAC)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCUUG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaaa)C 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGUUGUCAG- --UCC(---- ---auuu)GG A--UU-GUCA --UUUCAAUG 1501 ---GGGGAUA ----UUUAAA -CCCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacug-uggg c-ugug-cag guuugu--cc cu-ggucguc ccgucc-aug ---------- 1801 ---------- -----uc-g- gauuug-gug -acccaggcc cuugca-gcc c--------- 1861 -----gugaa c-auucaaag aaacaagaaa cacgggagug guuccuuucc ugauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ua-- -cgcauguca ugcaugccag ggggcguccg ugauuuuuua cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- gaagcgu-ga cuaaagcagu 2161 cauuuga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc ucuaggcuac cguuucggcu uuuguugguu 2281 uuaaaggucu auuggagauu auggagcugu gcgacaagug cuuucccauc gcaac----- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---uucgguu cggugugug- -------g-- ---------- -cgccuuug- 2521 --agggguuu agug-c-guc cggugcgagc uccggu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ucgu 2821 -cc-ggccgu -aa-cgccuu uucaacuca- cggccucuag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGGGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGAGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-u-c--- ----(----- ---------) uuaugggccg gccagcggca 3481 ggguuuaccc uguguc-agc accgcgc--- ---ccgcuuu uaccaacuua cguaucuuuu 3541 cuauuu---- ---------- ---------- ------ggcc uuuaccggcu acccacggga 3601 auauccucag cac------g u-uu-ucu-g -u-uuuuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 ggau-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauu-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uagaau u--caga-au ugcccauaga auag-caa-a 4381 -----cucau c---ggcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accc aacggugggc ug-------c auucgguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaauu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u ug-u(----- 5041 -aauugc-)a caag-g-ugA AAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg a--------- ---------- ---------- 5401 accuacu-ug auc(aaaa-) gagug----g ggaaaccccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGGAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagg-cgg-- -ug------- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ---------- 5761 uauccg-ccc -gaaa-|guu -caccgauau uu-cuu-c-a auag-AGGAA GC-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Try.El-CP 5903 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma sp. (strain El-CP). ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma sp. (strain El-CP). ORGANISM Trypanosoma sp. (strain El-CP). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L14841 LOCUS TRBRRSS 2130 bp ss-rRNA RNA 26-APR-1993 DEFINITION Trypanosoma sp. ribosomal RNA small subunit. ACCESSION L14841 KEYWORDS ribosomal RNA small subunit. SOURCE Trypanosoma sp. (strain El-CP) rRNA. ORGANISM Trypanosoma sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2130) AUTHORS Maslov,D.A. and Simpson,L. TITLE Phylogenetic analysis of fresh water fish parasites Trypanoplasma borreli and Trypanosoma sp. El-CP based on the sequences of small subunit ribosomal RNA JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..2130 /standard_name="SSU rRNA" /product="ribosomal RNA small subunit" /label=SSUrRNA /note="putative" source 1..2130 /organism="Trypanosoma sp." /strain="El-CP" /sequenced_mol="rRNA" BASE COUNT 541 a 476 c 571 g 542 t ORIGIN BASE COUNT 541 a 476 c 571 g 542 t 3773 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnCA-UAU --GCUUGUUU 61 CAAG|-GACU UA-GCCAUGC A-UGCCU-CA GA|------- |-------(- ---)[----- 121 ---------- --------au cacugc--ac ---------- -uu-g-cag- gaa]------ 181 -----|---U CU|G-CGCA- UGGCU-CAUU ACAu-caga- cgu-aauc-- ----ugccgc 241 aaac<----- ---------- ---------- --auguugcg guua-ccgca u--------- 301 ->UAUUGG-A UAACUUGGC( -G-AAAA)GC CAAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucuuuugac -ga|acaacu gc|--CCU-A UCA--GCCAG U-GAUGGCC- 1141 GU(-GUAGUG G)ACU-GCCA U-|GGCGU-U GAC|GGGA-G --CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACUUC (UACG-)GAG 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUGUC-A( aaacaaac)- 1321 GAUG-A-GGC -|A|GCGAAA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG AGCCGACAG- --UCC(---- -caauug)GG A--UU-GUCG U-AUUCAAUG 1501 ---GGGGUUA ----UUUAAU -ACCA--UCC A-----AU-A U-CGA-GUAA C---->AAUU 1561 GGAG|GA-CA A-GU-C-UG- U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--UGC UGUUG-CUG| UUA--AAGGG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauug-aggg c-cucu-gag gc---g--ca cu-gguaugu cccguu-cac ---------- 1801 ---------- -----uu-c- gaauug-gug -acccaggcc cuugug-guc c--------- 1861 -----gugaa c-auuc--ag aaacaagaaa cacgggagug guuccuuccu -gauu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uu-- -cgcauguca ugcaugccag ggggcgcccg ugauuuuu-a cugugacuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aaagugu-ga ccaaagcagu 2161 cauccga--- ---------- ---------- --cuugaauu agaa------ ---------- 2221 ---agcaugg gauaacaaag gagcag--cc uaugggcuac cguuucggcu uuuguugguu 2281 uuaaaagcuc auuggagauu augggguugu gcgacaagcg gcugggug-- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ----ccuauu guguacccg- -------u-- ---------- -cgccuuugu 2521 gggaaauccg uacc-g-aug cggggcggcu ucggcu---- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ugcu 2821 -cc-ucgcgg -ug-ccuucc cucaacuca- cugcuuccag g--aaugaag ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|AGUU ---------- 3001 --CGGGGGAG AA|--CGUAC UGGUGCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-C-C 3061 GCACC-AAG- A-CGAACU-A CAGC(-GAAG )--GC|A--- UUCUUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CCUUCCU -CAA-U|CA- A-GAACCAAA 3301 GUGUGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CA-U -UGUAG|UCC AC--ACU-GC AAACGAUGAC ACC|CA|--- 3421 -ugaauu-gg gga-g-u--- ----(----- ---------) uuuuggucgc aggcgauguc 3481 ggguucaucu cgcucaucac cucaccaa-- --ugauauca auuuacgugc auauucuuuu 3541 cggucc---- ---------- ---------- -------ucg caagggggcc uuuuacggga 3601 auauccucag cac------g uuuu-cuu-a -c-uucuuc- ---------- ----acGC(- 3661 GAAA-)GCuu uGAGgu-uac aGUC|-U|C- AGGGGGGAGU AC--GU-UC( --GCAA-)GA 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-AAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--GAA CUUUACCAGA UC[cgg-aca 4081 gggu-gagga uu-----gac aga(uugagu g-u)------ ucuuu----- cuc-gauc-c 4141 ccugaa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GC-UU UUG|GUCGG- U|GGA(-GUG 4261 A-)UUUGUU- -UGG(UU-GA UU)CCGUCA- AC-GGACGAG AUCCA-AG|- ---------- 4321 ------(--- --)[CUGCCC AG--uaagau u--caga-au ugcccauagg auag-caa-u 4381 -----cccuu c---cgcggg u-----(uuu -)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ------accu aagggggggc gg-------u auucguuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guauc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUCUGCGG]- --|------- ---------- GAuu-ccu-u -g-a(----- 5041 -cuuugc-)a caag-g-ugA GAUU-UUGGG CAACAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CC- 5221 U-CAA-UGUU CUGG-GCGAC A-CGCGCACU ACAAU--G-U CAGUG----- ---------- 5281 ---(------ ----)[agaa caagaaa--- ---------- ---------- ---------- 5341 ---------- ---aacgac( -uuuu)gucg u--------- ---------- ---------- 5401 accuacu-ug acc(aaaa-) gagug----g gaaaacaccg gaauca]--- ---------- 5461 -------cau aga-c-c--- cACU-U-GGG ACCGAGUAU( UGCAAUUA)U UGGUCGCGCA 5521 ACGAGG-AAU G--UCUCGUA GG-CGC-AGC (-UCAUCAA- )ACUGU-G-C -CGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGUUGU-U-U CC-GAU--GA UG-GUGca-- 5641 aua-cagg-- uga-ucgga- cagu-cga-- --g------- ---------- ---------- 5701 -------(ug uu--u-)--- ---------- ---------- ---------- ---------- 5761 cacuua-acu -gaaa-|guu -caccgauau ug-cuu-c-a uuag-AGGAA GC-AAAA-G- 5821 Unnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Hetero 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS N.gruberi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M18732 LOCUS M18732 2019 bp UNA 15-DEC-1988 DEFINITION Naegleria gruberi, small subunit ribosomal RNA. ACCESSION M18732 REFERENCE 1 (bases 1 to 2019) AUTHORS Clark,C. and Cross,G. TITLE Small subunit ribosomal RNA serquence from naegleria gruberi JOURNAL Mol Biol Evol (1988) In press STANDARD unannotated staff_entry COMMENT Submitted in computer readable form by the C.Clark 06-APR-1988 BASE COUNT 516 a 429 c 535 g 539 t ORIGIN BASE COUNT 516 a 429 c 535 g 539 t 3884 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-CU-A-UAU --GCUUGUCU 61 CAAA|-GCCU AA-GCCAUGC A-AAUGU-AA GA|------- |-------(- ---)[ucaau 121 cauaugc--- -------ggu uucggccgug ---------- -uaua-auga uag]------ 181 -----|---U CU|G-UGGA- AGGCU-CAUU AUAa-cagu- uau-acuc-- ----cuagcc 241 acug<----- ---------- ---------- ---------g aaaguuu--- ---------- 301 ->ACAAGG-A UACCACCGU( -U-AACU)GC AGCGA-UA-- UACUUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -caggcagag -ga|guuucu ua|--CCU-A UCA--GCUC- --GUUGUUU- 1141 GU(-UUAAAG G)ACA-AACC A-|GGCUU-U GAC|GGGU-A --CGGG|GAA -U-(CAGU-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)CGC UACC-ACAUC (UAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCUC-A( ---aua--)C 1321 GAGG-A-GGU -|A|GUGACA AGCU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- -------agu 1441 gacuccacac cauucggu-- gggga(---- gguauug)uc uucug-acga u-uuuccau- 1501 ------gauu ----ugggu- -guag-aUAA C-----CC-U U-AGA-GUAG C---->CAUU 1561 GGAG|GA-AA A-GU-C-UGG U+G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 G-AGCGUA|U AUUAA--UAC UGCUG-UAG| UUA--AAACG CCCGUAGUAU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 accuaagagu g-ggug-ugu aguaau--u- ag-uuuuacc agagga-cgg ---------- 1801 ---------- ------u-u- ggcgag-a-- -guuuaucac ucuugu-uug cc-------- 1861 uacuuuuggu a-gacuuuag ucgggcugga ucuuuggucc ucgucugaca guugc----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uacg uacuuacuua ccacgguuca uccgugagg- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------c 2161 ccuug----- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------g cuugcaacug ua-aaua--a 2461 aucguugugc uu-aa-ag-c gggcuaug-- -------a-- ---------- -ua------- 2521 ------cucu gcc--a--ga gcgauu-uag cauggga|cu -gcagag-ua -gcug----- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- uauuugagcg aa-------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --gg|uugca 2821 --c-cucggu -gu-ggcug- ---gagcuu- gguacagcgc u--uguaaug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCUC|AGGG ---------- 3001 --UGAGGCCC CG|--GGUAC CAUGAGG-CU -AGAG(GU-G AAA---)UUC U-GAGA-C-C 3061 CUCAU-GUG- A-CCAACU-A AGGC(-GAAA )--GC|Uguc GUGGGC-CA| CC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---AGCUCGU -CUA-U|CA- G-GGACAAAA 3301 GUUGGGGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC CA--ACU-AU AAACGAUACC AAC|CG|--- 3421 --aguau-uu ggg-a-a-ga ----(cacua ucccagcca) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------uc-u u-cu-cag-a ---acuc--- ---------- ----aaGG(- 3661 GAAA-)CCuu -aaguc-uuu GGGU|-U|C- UGGGGGGAGU AU--AG-UC( --GCAA-)GA 3721 CCG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-AGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUCUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[agg-aca 4081 caag-uuuga uu-----gac agg(uuaaua g-c)------ ccuuu----- cuu-gauu-g 4141 uguggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GG-GU- AGU-G-CAUG |GCC|GU-UU CCA|GUUCG- U|GGA(-GUG 4261 A-)UCUGUC- -UUG(UU-AA UU)CAGAUA- AC-GAACGAG ACCUA-AG|- ---------- 4321 ------(--- --)[CCU--U UAACUAGCcg [--uaggccu uuuc(cuucg )ggg-aaggg 4381 uua--]-guu u---gucgga acaggu(uuc g)-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- -------gcc 4621 uguuccaaaa c--------- ---cu[acga gacuuuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u]caG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAAAGG]- --|------- ---------- GACU-Uca-u -u-c(----- 5041 guaaacua)g gaug-A-GGA AGAU-UUAGG CCAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCU|CU- 5221 U-AGA-UGUC CUGG-GCUGC A-CGCGUACU ACAAU--A-A CGGUA----- ---------- 5281 ---(------ ----)[ccag cgagcgc--- ---------- ---------- ---------- 5341 ---------- -----uaug( -guuu)uaua a--------- ---------- ---------- 5401 -ccccuu-au ccu(-aau-) aggau----u gggaaaacuu uucaaa]--- ---------- 5461 -------cac cgu-u-a--- uGAC-A-GGG AUCGAGGAU( UGGAAC--)A UCCUCGUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GGU (-UCAUCAU- )ACCAC-A-U -UGAUUACG- 5581 U-CCCUGCCU UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--GG GA-Cgaag-a 5641 gau-g-aac- cug-gcgga- ccga-acc-- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 ---ggu-aag -ggaa-|acc -aguuaaauc uc-uuc-g-u cugu-AGGAA GG-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-U CGUAGG(UGA A)CCUGCGUA GGGAUCA--- 5881 --UUU~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Micros 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS N.necatrix 5903 bp RNA RNA 11-JAN-191 DEFINITION Nosema necatrix. ACCESSION No information KEYWORDS No information. SOURCE Nosema necatrix. ORGANISM Nosema necatrix. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U11051 LOCUS NNECSRRN 1247 bp DNA INV 06-JUL-1994 DEFINITION Nosema necatrix ATCC 30460 16S ribosomal RNA gene. ACCESSION U11051 KEYWORDS . SOURCE Nosema necatrix ORGANISM Nosema necatrix Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1247) AUTHORS Da Silva,A.J., Slemenda,S.B. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Nosema necatrix (Microsporida), ATCC 30460 JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1247) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (20-JUN-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 507916 FEATURES Location/Qualifiers rRNA 1..1247 /product="16S ribosomal RNA" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA; putative" primer_bind complement(1221..1247) /note="PCR primer based on V. necatrix SSU-rRNA; putative" source 1..1247 /strain="ATCC 30460" /organism="Nosema necatrix" BASE COUNT 405 a 171 c 291 g 380 t ORIGIN BASE COUNT 405 a 171 c 291 g 380 t 4656 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------- -------uau gga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UAAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 a>AUUAGU-A UAACUGCGU( -U-A-AA)GU GUAGCaUAA- GAC------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AUAUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u ucuau)uguu ---------- ---------- 1501 ---------u -cau---auu -----guaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|AAUA ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-agau--- ---------- ----gaUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-ucaga ga-------- aga(uuuau- a-a)------ ucu------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------u uaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 ---AAUCA)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--A-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS Ent.bien.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Enterocytozoon bieneusi. ACCESSION No information KEYWORDS No information. SOURCE Enterocytozoon bieneusi. ORGANISM Enterocytozoon bieneusi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07123 LOCUS ENZEB 1250 bp ds-DNA INV 15-MAR-1993 DEFINITION Enterocytozoon bienusi DNA sequence. ACCESSION L07123 KEYWORDS . SOURCE Enterocytozoon bienusi (individual_isolate PL) DNA. ORGANISM Enterocytozoon bienusi Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblasina; Enterocytozoonidae. REFERENCE 1 (bases 1 to 1250) AUTHORS Zhu,X., Tanowitz,H.B., Cali,A., Wittner,M. and Weiss,L.M. TITLE Small subunit rRNA sequences of Entercytozoon bienusi and its potential diagnostic role JOURNAL Unpublished (1993) STANDARD full automatic COMMENT *natural host = Human tissue type = intestinal epithelial lining cell type = enterocyte. BASE COUNT 346 a 245 c 361 g 298 t ORIGIN BASE COUNT 346 a 245 c 361 g 298 t 4653 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CA GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagcc- ---------- --uua-cggu gga]------ 181 -----|---A CG|G-CGAA- CGGCU-CAGU AAUG-UUGC- GGU-AAUU-- ----UGGUCU 241 CUGU<----- ---------- ---------- ---------- ---------- ---------- 301 g>uguaaa-C UAACCACGG( -U-A-AC)CU GUGGC-uaa- aa-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GCGGGGAAU -AA|GGCGCA AC|--CCU-A UCA--GCUU- --GUUGGUA- 1141 GU(-GUAAAG G)ACU-ACCA A-|GGCCA-U GAC|GGGU-A A-CGGG|AAA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GUCC -ACUCCU--( --uac---)- 1321 AGGAGA-GAC -|A|GUCAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---auaac-- -acc-ugagu -----guaaa g-------ac cuuaggguga agc-->AAUU 1561 GGAG|GG-CA A-GCUU-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AA-|CUCCAA 1621 G-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAGGG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---ugaaaug --c-guuguu caauagcg-a ugaguuugcu --aaucuuug c---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAa|cGga ---------- 3001 --UAGGGAGU GU|--AGUAU AGACUGG-CG -AAGA(AU-G AAA---)UCU C-AAGA-C-C 3061 CAGUU-UAG- G-ac--ua-C GAGC(-GAAG )--GC|G--- ACACUC-UU| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UAUCUUA -GGA-U|CA- A-GGACGAAG 3301 GCAGGAGUA- CCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CG-C -UGUAG|UUC CU--GCA-GU AAACUAUGCC GAC|AG|--- 3421 --ccugu-gu gu-------- ----(----- gaga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---a-uac-g -u-gggc--- ---------- ----GGGA(- 3661 GAAA-)UCU- -uAGUGU-UC GGGC|-U|C- UGGGGAUAGU AC--GC-UC( --GCAA-)GG 3721 GUG-AAACUU -AAAGcgAAA -UUG|AC-GG -AA-GGACA- -CUAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCU|G CU-UAAUUUA (ACUCAA-CG )CGGG--AAA ACUUACCAGG GU[caa--gu 4081 cauucg---- -------uu- gg--aucgaa u--------a cgu------- ----gag--a 4141 auggcag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UG GAA|AUUGA- U|Gg-(-gc- 4261 a-)-cc-UU- -UAG(CU-UA AA)UGCUUA- AC-CAGUGAG ACCUC-CU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -u-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GCAC-GGU-G -U-U(----- 5041 ---cugu-)A ACAC-A-GGA GGGU-GGAGG CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UG A|UGCC|CU- 5221 U-AGA-UAUC CUGG-GCAGC A-AGCGCAAU ACAAU--A-- cucuuca--- ---------- 5281 ---(guagac aaag)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 --ugauuuga --gaU----- -GAG-U-AGG AUCUACGUU( UGUAA--A)U ACGUAGUG-A 5521 AUAAGG-AAU U--CCUAGUA AC-GGU-GCC (-UCAUCAA- )GGCAU-U-G -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CACUAU-U-U CA-GAU---G GU-CAUA--- 5641 ggg-augaa- -gagc----- ---------- ---------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauau c--uau-g-g cUAG-AUAAA GU-ACAA-G- 5821 UCGUAACAAG GU-------- -----A-A-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Ent.bien.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Enterocytozoon bieneusi. ACCESSION No information KEYWORDS No information. SOURCE Enterocytozoon bieneusi. ORGANISM Enterocytozoon bieneusi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L16868 LOCUS EZORGA 1294 bp ds-DNA INV 02-AUG-1993 DEFINITION Enterocytozoon bieneusi ribosomal RNA gene sequence. ACCESSION L16868 KEYWORDS ribosomal RNA. SOURCE Enterocytozoon bieneusi (individual_isolate M6) DNA. ORGANISM Enterocytozoon bieneusi Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1294) AUTHORS Hartskeerl,R.A., Schuitema,A.R., Van Gool,T. and Terpstra,W.J. TITLE Genetic evidence for the occurrence of extra-intestinal Enterocytozoon bieneusi infections JOURNAL Unpublished (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1294) AUTHORS Hartskeerl,R.A. TITLE Direct Submission JOURNAL Submission received (May 18 1993) via Authorin E-mail by Genbank STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..23 /note="based on V. necatrix srRNA sequence; putative" rRNA 1..1294 /note="putative" primer_bind complement(1271..1294) /note="based on V. necatrix srRNA sequence; putative" source 1..1294 /organism="Encephalitozoon bieneusi" /isolate="M6" /sequenced_mol="DNA" BASE COUNT 361 a 247 c 375 g 311 t ORIGIN BASE COUNT 361 a 247 c 375 g 311 t 4609 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CA GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagcc- ---------- --uua-cggu gga]------ 181 -----|---A CG|G-CGAA- CGGCU-CAGU AAUG-UUGC- GGU-AAUU-- ----UGGUCU 241 CUGU<----- ---------- ---------- ---------- ---------- ---------- 301 g>uguaaa-C UAACCACGG( -U-A-AC)CU GUGGC-uaa- aa-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GCGGAGAAU -AA|GGCGCA AC|--CCU-A UCA--GCUU- --GUUGGUA- 1141 GU(-GUAAAG G)ACU-ACCA A-|GGCCA-U GAC|GGGU-A A-CGGG|AAA -U-(CAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GUCC -ACUCCU--( --uacg--)- 1321 GGGG-A-GAC -|A|GUCAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---auaag-- -acc-ugagu -----guaaa g-------ac cuuaggguga agc-->AAUU 1561 GGAG|GG-CA A-GCUU-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AA-|CUCCAA 1621 G-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAGGG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ugaau--gca 2821 -a-uuaaaug -uc-guuguu caauagcg-a ugaguuugcu --aauguuug c---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAa|cGga ---------- 3001 --UAGGGAGU GU|--AGUAU AGACUGG-CG -AAGA(AU-G AAA---)UCU C-AAGA-C-C 3061 CAGUU-UGG- A-CUAACG-G AGGC(-GAAG )--GC|G--- ACACUC-UU| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UAUCUUA -GGA-U|CA- A-GGACGAAG 3301 GCAGGAGUA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CG-C -UGUAG|UUC CU--GCA-GU AAACUAUGCC GAC|AG|--- 3421 --ccugu-gu gu-------- ----(----- gaga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---a-uac-g -u-gggc--- ---------- ----GGGA(- 3661 GAAA-)UCU- -uAGUGU-UC GGGC|-U|C- UGGGGAUAGU AC--GC-UC( --GCAA-)GG 3721 GUG-AAACUU -AAAGcgAAA -UUG|AC-GG -AA-GGACA- -CUAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCU|G CU-UAAUUUA (ACUCAA-CG )CGGG--AAA ACUUACCAGG GU[caa--gu 4081 cauucg---- -------uu- g---aucgaa u--------a cgu------- ----gag--a 4141 auggcag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UG GAA|AUUGA- U|GGG(-GCG 4261 A-)CCU-UU- -AGC(UU-AA AU)GCUUAA- AC-CAGUGAG ACCUC-CU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -u-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GGU-G -U-U(----- 5041 ---cugu-)A ACAC-A-GGA GGGU-GGAGG CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UG A|UGCC|CU- 5221 U-AGA-UAUC CUGG-GCAGC A-AGCGCAAU ACAAU--A-u cucuuca--- ---------- 5281 ---(guagac aaag)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 --ugauuuga g-a-u----- -GAG-U-AGG AUCUACGUU( UGUAA--A)U ACGUAGUG-A 5521 AUAAGG-AAU U--CCUAGUA AC-GGU-GCC (-UCAUCAA- )GGCAU-G-G -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CACUAU-U-U CA-GAU---G GU-CAUA--- 5641 ggg-augaa- -gagc----- ---------- ---------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauau c--uau-g-g cUAG-AUAAA GU-ACAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C AGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Nos.apis.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Nosema apis. ACCESSION No information KEYWORDS No information. SOURCE Nosema apis. ORGANISM Nosema apis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73894 ID NARRNA standard; DNA; INV; 1198 BP. XX AC X73894; XX DT 30-JUN-1994 (Rel. 40, Created) DT 13-JUL-1994 (Rel. 40, Last updated, Version 4) XX DE N.apis gene for small subunit rRNA XX KW small subunit ribosomal RNA. XX OS Nosema apis OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Microsporida; Apansporoblastina; Nosematidae. XX RN [1] RA Malone L.A., Broadwell A.H., McIvor C.A., Lindridge E.T., RA Ninham J.; RT "Ribosomal RNA genes of two of two microsporidian species, Nosema RT apis and Varaia oncoperae are very variable"; RL J. Invertebr. Pathol. 64:0-0(1994). XX RN [2] RP 1-1198 RA Malone L.A.; RT ; RL Submitted (05-JUL-1993) to the EMBL/GenBank/DDBJ databases. RL L.A. Malone, Horticulture & Food Research Institute of NZ Ltd, MT RL Albert Research Centre, Private Bag 92169, Auckland, NEW ZEALAND XX RN [3] RP 1-1198 RA Malone L.A., Broadwell A.H., Lindridge E.T., McIvor C.A., RA Ninham J.; RT "Ribosomal RNA genes of two microsporidia, Nosema apis and Vavraia RT oncoperae are very variable"; RL J. Invertebr. Pathol. 64:0-0(1994). XX FH Key Location/Qualifiers FH FT source 1..1198 FT /organism="Nosema apis" FT /dev_stage="spore" XX SQ Sequence 1198 BP; 372 A; 173 C; 288 G; 365 T; 0 other; BASE COUNT 372 a 173 c 288 g 365 t 4705 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN NNN(NNN)NN NN|NNNNGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU GG-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- --gacguac- ---------- --uau-guac uga]------ 181 -----|---A AG|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UGAUGU 241 ACCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uauac--A UAACUACGU( -U-A-AA)GU GUAGC-UAA- CAu------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AUGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U AAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( --auu---)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ----aacaua 1501 ---guuguuu -cac---auu -----uuaaa c--------g uaugugagca gauu->AAUU 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuauua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACU-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----- -gaug----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----UAUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uugu-ucugc ga-------- gga(--uaug a--)------ ucu------- -ga-gga--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- auua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACU-GAC-A -C-U(----- 5041 ----auu-)A GUGU-A-GGA AGGA-AAGGA CUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UU A|UGCC|CU- 5221 C-UGA-CAUU UUGG-GCAGC A-CGCGCAAU ACAAU--a-g a--------- ---------- 5281 ---(-cuuua a---)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------- u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gcu acuugaacaa u--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUNNN(NNN N)NNNNN-NN NNNNNNN--- 5881 --NNN~~~~~ ~~~~~~~~|| ||| // LOCUS Nos.apis.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Nosema apis. ACCESSION No information KEYWORDS No information. SOURCE Nosema apis. ORGANISM Nosema apis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U26534 LOCUS NAU26534 1242 bp DNA INV 12-JUN-1995 DEFINITION Nosema apis small subunit ribosomal RNA gene. ACCESSION U26534 KEYWORDS . SOURCE Nosema apis. ORGANISM Nosema apis Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1242) AUTHORS Pieniazek,N.J., Kurtti,T.J., Fries,I., da Silva,A.J., Slemenda,S.B., Gutell,R.R., Ditrich,O. and Lom,J. TITLE Molecular taxonomy of Nosema apis (Microsporidia, Nosematidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1242) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (08-MAY-1995) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA COMMENT NCBI gi: 857487 FEATURES Location/Qualifiers source 1..1242 /isolate="UMSP, received from Dr. Timothy J. Kurtti, and Uppsala, received from Dr. Ingemar Fries" /organism="Nosema apis" /specific_host="Apis mellifera" /note="sequence for isolates UMSP and Uppsala was identical" rRNA 1..1242 /note="small subunit ribosomal RNA, SSU-rRNA" /product="16S ribosomal RNA" primer_bind 1..21 /note="sequence derived from PCR primer binding region" primer_bind complement(1216..1242) /note="sequence derived from PCR primer binding region" BASE COUNT 387 a 183 c 297 g 375 t ORIGIN BASE COUNT 387 a 183 c 297 g 375 t 4661 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---CU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---gacguac ---------- --uau-guac uga]------ 181 -----|---A AG|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UGAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->-uauac-A UAACUACGU( -U-A-AA)GU GUAGC-UAA- caua------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --UGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U AAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---auu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aca(------ ua-gu)uguu ---------- ---------- 1501 ---------u -cac---auu -----uuaaa --------cg uaugugagca gauu->AAUU 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuguua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACU-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----- gaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----uaUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uugu-ucugc ga-------- gga(-uauga ---)------ ucu------- -ga-gga--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[a----- ---------- ---------- ---------u uaga-c---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -------u]- --|------- ---------- GACA-C---- -U-A(----- 5041 ---uuag-)U G--U-A-GGA AGGA-AAGGA CUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UU A|UGCC|CU- 5221 C-UGA-CAUU UUGG-GCAGC A-CGCGCAAU ACAAU--a-g a--------- ---------- 5281 ---(-cuuua a---)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------- u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---gc-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Nos.bomb.1 5903 bp RNA RNA 29-MAY-1996 DEFINITION Nosema bombycis.; . ACCESSION D85504 KEYWORDS . SOURCE Nosema bombycis. ORGANISM Nosema bombycis. REFERENCE 1 (bases 1 to 1232) AUTHORS Inoue,T. TITLE Direct Submission JOURNAL Kanagawa 252, Japan (E-mail:tinoue@ddbj.nig.ac.jp, Tel : 0466-83-2563(ex.401), Fax:0466-83-2573) Submitted (21-MAY-1996) to the DDBJ/EMBL/GenBank databases. Tadashi Inoue, Lab. Nucleic Acid Science,, College of Bioresource Sciences, Nihon Univ.; Kameino 1866, Fujisawa, STANDARD No information REFERENCE 2 (sites) AUTHORS Hatakeyama,Y., Kawakami,Y., Iwano,H., Inoue,T. and Ishihara,R. TITLE Comparison of secondary strucutres of smal subunit ribosomal RNA from five microsporidia pathogenic to the silk worm, Bombyx mori JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D85504 BASE COUNT 428 a 156 c 267 g 381 t 4671 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUACU 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- --ugaauaua ---------- --------aa gaa]------ 181 -----|---a ag|a-cgaa- CAGCU-CAGU AACu-cuUA- UUU-GAUU-- ----UGAUGU 241 auua<----- ---------- ---------- ---------- ---------- ---------- 301 ->ggauu--C UAACUAUGU( -U-A-AA)UU AUAGG-UAA- CA-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> AUAAUACAAU -AA|GAAUAA GA|--UCU-A UCA--GUUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GACUA-U GAC|GGAU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGAUU)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGAU-A( --UUA---)U 1321 AUUG-A-GGC -|A|GUUAUG AGUA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- -auuuuauaa 1501 ---uuauugu -agu---auu -----guaag u--------a cauauuacaa gaua->AAUC 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCGA 1621 U-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCUGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuuaua au--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|auug ---------- 3001 --UAAGGUAU AC|--UGUAU GGUUAGG-AG -AGAG(AU-G AAA---)UGU G-AUAA-C-C 3061 CUAAC-UGG- A-UGAACA-G AAGC(-GAAA )--GC|U--- GUAUAC-UU| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUAUU -AGA-A|CA- A-GGACGUAA 3301 GCUAGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC UA--GCA-GU AAACUAUGUU GAA|UC|--- 3421 --auaga-ua uau------- ----(----u uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --au-aua-u -u-uaug--- ---------- ----UAGA(- 3661 GAAA-)UUAA -GAUUAU-AU UGAC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GUA AUUUACCAGG UA[uaa---- 4081 caugaua--- ---------- ---(uaauau u-u)------ ---------- ----uau--c 4141 aug-a----- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU CCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-AA- -UGA(UU-AA UU)UCAACA- AG-AUGUGAG ACCCU-CA|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- uuua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAU-G -U-A(----- 5041 ----GUGA)U ACAU-A-UGA AGGA-GAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 A-AGA-UAAU CUGG-GUUGC A-CGCGCAAU ACAAU--a-a ua-------- ---------- 5281 ---(-uuuga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------u a-u-u----- -AUA-A-GGG AUAAUAUAA( UGUAA--G)A UAUAUUUG-A 5521 ACAUGG-AAU U--GCUAGUA AA-UUU-UAU (-UUAAUAA- )GUAGA-A-U -UGAAUGAG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G GU-AUUA--- 5641 ucu-augaa- -caaa----- ---------- ---------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|-ua aagugaauag a--uag-u-a cUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUUGG(UGA A)CCAGCAGA GGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Nos.bomb.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39111 LOCUS NMERGOA 1234 bp DNA INV 24-AUG-1995 DEFINITION Nosema bombycis small subunit ribosomal RNA gene. ACCESSION L39111 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Nosema bombycis DNA. ORGANISM Nosema bombycis Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1234) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954762 FEATURES Location/Qualifiers source 1..1234 /organism="Nosema bombycis" /sequenced_mol="DNA" rRNA 1..1234 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" primer_bind complement(1214..1234) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix" BASE COUNT 429 a 155 c 268 g 382 t ORIGIN BASE COUNT 429 a 155 c 268 g 382 t 4669 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUACU 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- --uga----- ---------- --aua-uaaa gaa]------ 181 -----|---A AG|A-CGAA- CAGCU-CAGU AACU-CUUA- UUU-GAUU-- ----UGAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 g>-gauu--C UAACUAUGU( -U-A-AA)UU AUAGg-uaa- ca-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> AUAAUACAAU -AA|GAAUAA GA|--UCU-A UCA--GUUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GACUA-U GAC|GGAU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGAUU)GC UUACUAAGUC (AUAAG)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGAU-A( --uua---)U 1321 AUUG-A-GGC -|A|GUUAUG AGUA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- -auuuuauaa 1501 ---uuauugu -agu---auu -----guaag u--------a cauauuacaa gaua->AAUC 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCGA 1621 U-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCUGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuuaua au--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagg|auug ---------- 3001 --UAAGGUAU AC|--UGUAU GGUUAGG-AG -AGAG(AU-G AAA---)UGU G-AUAA-C-C 3061 CUAAC-UGG- A-UGAACA-G AAGC(-GAAA )--GC|U--- GUAUAC-UU| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUAUU -AGA-A|CA- A-GGACGUAA 3301 GCUAGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC UA--GCA-GU AAACUAUGUU GAA|CC|--- 3421 --auaga-ua uau------- ----(----u uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --au-aua-u -u-uaug--- ---------- ----UAGA(- 3661 GAAA-)UUAA -GAUUAU-AU UGAC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -GUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CC )CGGG--GUA AUUUACCAGG UA[uaa---- 4081 cauggua--- ---------- ---(uaauau u-u)------ ---------- ----uau--c 4141 aug-a----- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU CCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-AA- -UGA(UU-AA UU)UCAACA- AG-AUGUGAG ACCCU-CA|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- uuua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAU-G -U-A(----- 5041 ----GUGA)U ACAU-A-UGA AGGA-GAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 A-AGA-UAAU CUGG-GUUGC A-CGCGCAAU ACAAU--a-a ua-------- ---------- 5281 ---(-uuuga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------u a-u-u----- -AUA-A-GGG AUAAUAUAA( UGUAA--G)A UAUAUUUG-A 5521 ACAUGG-AAU U--GCUAGUA AA-UUU-UAU (-UUAAUAA- )GUAGA-A-U -UGAAUGAG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G GU-AUUA--- 5641 ucu-augaa- -caaa----- ---------- ---------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|-ua aaguGAauag a--uag-u-a cUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS N.ceranae 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U26533 LOCUS NSU26533 1259 bp DNA INV 12-JUN-1995 DEFINITION Nosema ceranae small subunit ribosomal RNA gene. ACCESSION U26533 KEYWORDS . SOURCE Nosema ceranae. ORGANISM Nosema ceranae Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1259) AUTHORS Fries,I., da Silva,A.J., Slemenda,S.B., Feng,F. and Pieniazek,N.J. TITLE Nosema ceranae sp. nov. (Microsporidia, Nosematidae), morphological and molecular characterization of a microsporidian parasite of the Asian honey bee Apis cerana (Hymenoptera, Apidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1259) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (08-MAY-1995) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA COMMENT NCBI gi: 857489 FEATURES Location/Qualifiers source 1..1259 /organism="Nosema ceranae" /specific_host="Apis cerana" /note="This species name was unpublished at the time of submission" rRNA 1..1259 /note="small subunit ribosomal RNA, SSU-rRNA" /product="16S ribosomal RNA" primer_bind 1..21 /note="sequence derived from PCR primer binding region" primer_bind complement(1233..1259) /note="sequence derived from PCR primer binding region" BASE COUNT 403 a 169 c 288 g 399 t ORIGIN BASE COUNT 403 a 169 c 288 g 399 t 4644 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- -----gaca- ---------- --------uu uga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UUAUGU 241 AAAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uuuuaa-u UAACUACGU( -U-A-AA)GU GUAGa-UAA- gau------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -guUUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCUG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-AGG-C -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua------u uauau-uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- --auuuuuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua ugg-a----- ----(---aa auauuaa--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- u-uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga-------- gaa(cgguuu uuug)----- uuu------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCUuauu- ---------- 4321 ------(--- --)[uuu--- ---------- ---------- ---------u auu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -----aaa]- --|------- ---------- GACA-GAC-A -C--(----- 5041 --aauca-)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-UGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuuaaacAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAacAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS N.furnacal 5903 bp RNA RNA 11-JAN-191 DEFINITION Nosema furnacalis. ACCESSION No information KEYWORDS No information. SOURCE Nosema furnacalis. ORGANISM Nosema furnacalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U26532 LOCUS NFU26532 1232 bp DNA INV 12-JUN-1995 DEFINITION Nosema furnacalis small subunit ribosomal RNA gene. ACCESSION U26532 KEYWORDS . SOURCE Nosema furnacalis. ORGANISM Nosema furnacalis Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1232) AUTHORS Pieniazek,N.J., da Silva,A.J., Slemenda,S.B., Gutell,R.R., Yasunaga,C., Munderloh,U.G. and Kurtti,T.J. TITLE Interrelationship among Nosema furnacalis, Nosema pyrausta, and Nosema bombycis as revealed by their small subunit ribosomal RNA JOURNAL Unpublished REFERENCE 2 (bases 1 to 1232) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (08-MAY-1995) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA COMMENT NCBI gi: 857488 FEATURES Location/Qualifiers source 1..1232 /lab_host="Helicoverpa zea" /strain="Ankeny, obtained from Dr. L. Lewis" /organism="Nosema furnacalis" /specific_host="Ostrinia furnacalis" rRNA 1..1232 /note="small subunit ribosomal RNA, SSU-rRNA" /product="16S ribosomal RNA" primer_bind 1..28 /note="sequence derived from PCR primer binding region" primer_bind complement(1206..1232) /note="sequence derived from PCR primer binding region" BASE COUNT 431 a 155 c 263 g 383 t ORIGIN BASE COUNT 431 a 155 c 263 g 383 t 4671 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUACU 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---uga---- ---------- --aua-uaaa gaa]------ 181 -----|---A AG|A-CGAA- CAGCU-CAGU AACU-CUUA- UUU-CAUU-- ----UGAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 ->-ggauu-A UAACUAUGU( -U-A-AA)UU AUAGa-UAA- caau------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --aAUACAAU -AA|GAAUAA GA|--UCU-A UCA--GUUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GACUA-U GAC|GGAU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGAUU)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUG-A-U( ---aug--)A 1321 UAUUGAGG-C -|A|GUUAUG AGUA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --auuuuuaa 1501 ---uuauugu -agu---auu -----guaag --------ua uauacuacaa gaua->AAUC 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCGA 1621 U-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCUGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuauua au--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aUug ---------- 3001 --UGAGGUAU AU|--UGUAU GGUUAGG-AG -AGAG(AU-G AAA---)UGU G-AUAA-C-C 3061 CUAAC-UGG- A-UGAACA-G AAGC(-GAAA )--GC|U--- AUAUAC-UU| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUAUU -AGA-A|CA- A-GGACGUAA 3301 GCUAGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC UA--GCA-GU AAACUAUGUU aaa|u----- 3421 --cauag-au aca-a----- ----(----u auuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-uaug--- ---------- ----uaGA(- 3661 GAAA-)UUAA -GAUUAU-AU UGAC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GUA AUUUACCAGA UA[u---cac 4081 ---------- -------aug gua--uaaua uuu------- uaucau---- -ga------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU CCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-AA- -UGA(UU-AA UU)UCAACA- AG-AUGUGAG ACCCU-CU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------a uuaa------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAU-G -U-A(----- 5041 ---guga-)U ACAU-A-UGA AGGA-GAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 A-AGA-UAAU CUGG-GUUGC A-CGCGCAAU ACAAU--a-a uau------- ---------- 5281 ---(-uua-- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 --------au a-u-u----- -AUA-A-GGG AUAAUAUAA( UGUAA--G)A UAUAUUUG-A 5521 ACAUGG-AAU U--GCUAGUA AA-UUU-UAU (-UUAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G GU-AUUA--- 5641 ucu-augaa- -c-aaa---- ---------- ---------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- ----u-|aa- -agugaauAG A--uag-u-a cUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS N.oulemae 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U27359 LOCUS NSU27359 1251 bp DNA INV 07-JUN-1995 DEFINITION Nosema oulemae small subunit ribosomal RNA gene. ACCESSION U27359 KEYWORDS . SOURCE Nosema oulemae. ORGANISM Nosema oulemae Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1251) AUTHORS Ditrich,O., Hostounsky,Z., Lom,J., da Silva,A.J., Slemenda,S.B. and Pieniazek,N.J. TITLE Nosema oulemae sp.nov. (Microsporidia, Nosematidae), morphological and molecular characterization of a microsporidian parasite of Oulema melanopus L. (Coleoptera, Chrysomelidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1251) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (17-MAY-1995) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA COMMENT NCBI gi: 849158 FEATURES Location/Qualifiers source 1..1251 /lab_host="Gastrophysa viridula or Oulema lichenis" /organism="Nosema oulemae" /isolate="isolated by Dr. Zdenek Hostounsky" /specific_host="Oulema melanopus L." /note="This species name was unpublished at the time of submission" rRNA 1..1251 /note="SSU-rRNA" /product="small subunit ribosomal RNA" primer_bind 1..21 /note="sequence derived from PCR primer binding region" primer_bind complement(1225..1251) /note="sequence derived from PCR primer binding region" BASE COUNT 400 a 170 c 291 g 390 t ORIGIN BASE COUNT 400 a 170 c 291 g 390 t 4652 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-UAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---gacauuu ---------- -------auu uga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UGAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uugaug-A UAACUACGU( -U-A-AA)GU GUAGa-UAA- aaug------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --UGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u uauau)uguu ---------- ---------- 1501 ---------u -cau---auu -----guaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-acau--- ---------- ----gaUA-- 3661 GAAA--UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-ucaga ga-------- gaa(uuuuu- a-a)------ uuu------- -ga-gga--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[uu---- ---------- ---------- ---------u ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ----uaua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 ---AAUCA)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS N.portugal 5903 bp RNA RNA 11-JAN-1997 DEFINITION Nosema portugal subsp. was Vairimorpha "portugal". ACCESSION No information KEYWORDS No information. SOURCE Nosema portugal subsp. was Vairimorpha "portugal". ORGANISM Nosema portugal. REFERENCE 1 (bases 1 to 1232) AUTHORS Charlie Vossbrinck JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF033316 LOCUS AF033316 1393 bp DNA INV 02-JAN-1999 DEFINITION Nosema portugal small subunit ribosomal RNA gene sequence. ACCESSION AF033316 NID g4104170 KEYWORDS . SOURCE Nosema portugal. ORGANISM Nosema portugal Eukaryota; Microsporidia; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1393) AUTHORS Maddox,J.V., Baker,M.D., Jeffords,M.R., Kuras,M., Linde,A., Solter,L.F., McManus,M.L., Vavra,J. and Vossbrinck,C.R. TITLE Nosema portugal, N. sp., isolated from gypsy moths (Lymantria dispar L.) collected in Portugal JOURNAL Unpublished REFERENCE 2 (bases 1 to 1393) AUTHORS Vossbrinck,C.R. TITLE Direct Submission JOURNAL Submitted (06-NOV-1997) Soil and Water, Connecticut Agricultural Experimental Station, 123 Huntington Street, New Haven, CT 06504, USA FEATURES Location/Qualifiers source 1..1393 /organism="Nosema portugal" /specific_host="Lymantria dispar (gypsy moth)" /db_xref="taxon:72706" /note="gypsy moth parasite" rRNA 1..1393 /product="small subunit ribosomal RNA" BASE COUNT 463 a 190 c 308 g 432 t BASE COUNT 405 a 172 c 285 g 383 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---gac---- ---------- --auu----- uga]------ 181 -----|---a aa-A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-AAUU-- ----UUAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->-uugaaac UAACUACGU( -U-A-AA)GU GUAGa-uaa- gaug------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --UGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a a---uauuau a---u-uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------aa uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga-------c gau(u-uuu- --a)------ auca------ -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[uauua- ---------- ---------- --------ua ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAC-A -C-A(----- 5041 ---aucag)U GU---A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-cgcgcaau acaau--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS N.trichopl 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09282 LOCUS NTU09282 1233 bp DNA INV 15-MAY-1994 DEFINITION Nosema trichoplusiae ATCC 30702 small subunit rRNA gene. ACCESSION U09282 KEYWORDS . SOURCE Nosema trichoplusiae ORGANISM Nosema trichoplusiae Eucaryotae; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1233) AUTHORS Da Silva,A.J., Slemenda,S.B. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Nosema trichoplusiae (Microsporida), ATCC 30702 JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1233) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (29-APR-1994) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 487398 FEATURES Location/Qualifiers rRNA 1..1233 /product="small subunit ribosomal RNA" misc_feature 1..21 /note="PCR primer based on Vairimorpha necatrix SSU-rRNA, putative" misc_feature 1207..1233 /note="PCR primer based on Vairimorpha necatrix SSU-rRNA, putative" source 1..1233 /strain="ATCC 30702" /organism="Nosema trichoplusiae" BASE COUNT 429 a 154 c 267 g 383 t ORIGIN BASE COUNT 429 a 154 c 267 g 383 t 4670 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUACU 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- --uga----- ---------- --aua-uaaa gaa]------ 181 -----|---a ag|a-CGAA- CAGCU-CAGU AACU-CUUA- UUU-GAUU-- ----UGAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 ->ggauu--C UAACUAUGU( -U-A-AA)UU AUAGg-uaa- ca-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> auaAUACAAU -AA|GAAUAA GA|--UCU-A UCA--GUUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GACUA-U GAC|GGAU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGAUU)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGAU-A( --uua---)U 1321 AUUG-A-GGC -|A|GUUAUG AGUA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- --------au uuuauaauua 1501 ------uugu -agu---auu -----guaag u--------a cauauuacaa gaua->AAUC 1561 GGAG|GG-CA A-AU-C-GAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCGA 1621 U-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCUGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auuuuau aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -uaag|cauu g--------- 3001 --UAAGGUAU AC|--UGUAU GGUUAGG-AG -AGAG(AU-G AAA---)UGU G-AUAA-C-C 3061 CUAAC-UGG- A-UGAACA-G AAGC(-GAAA )--GC|U--- GUAUAC-UU| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUAUU -AGA-A|CA- A-GGACGUAA 3301 GCUAGAGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC UA--GCA-GU AAACUAUGUU GAA|UC|--- 3421 --auaga-ua uau------- ----(----u uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --au-aua-u -u-uaug--- ---------- ----UAGA(- 3661 GAAA-)UUAA -GAUUAU-AU UGAC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GUA AUUUACCAGG UA[uaa---- 4081 cauggua--- ---------- ---(uaauau u-u)------ ---------- ----uau--c 4141 auga------ -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU CCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-AA- -UGA(UU-AA UU)UCAACA- AG-AUGUGAG ACCCU-CA|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- uaua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAU-G -U-A(----- 5041 ---guga-)U ACAU-A-UGA AGGA-GAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 A-AGA-UAAU CUGG-GUUGC A-CGCGCAAU ACAAU--a-a ua-------- ---------- 5281 ---(-uuuga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------u a-u-u----- -AUA-A-GGG AUAAUAUAA( UGUAA--G)A UAUAUUUG-A 5521 ACAUGG-AAU U--GCUAGUA AA-UUU-UAU (-UUAAUAA- )GUAGA-A-U -UGAAUGAG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G GU-AUUA--- 5641 ucu-augaa- -caaa----- ---------- ---------- ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|-ua aagugaauag a--uag-u-a cUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS N.vespul.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U11047 LOCUS NVESSRRN 1245 bp DNA INV 06-JUL-1994 DEFINITION Nosema vespula small subunit ribosomal RNA gene. ACCESSION U11047 KEYWORDS . SOURCE Nosema vespula ORGANISM Nosema vespula Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1245) AUTHORS Da Silva,A.J., Maleszka,R., Slemenda,S.B. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Nosema vespula (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1245) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (20-JUN-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 507913 FEATURES Location/Qualifiers rRNA 1..1245 /product="small subunit ribosomal RNA" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA; putative" primer_bind complement(1219..1245) /note="PCR primer based on V. necatrix SSU-rRNA; putative" source 1..1245 /organism="Nosema vespula" BASE COUNT 403 a 172 c 286 g 384 t ORIGIN BASE COUNT 403 a 172 c 286 g 384 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- --gac----- ---------- --auu-u--- -ga]------ 181 -----|---a aa|a-uGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UUAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uugaaa-C UAACUACGU( -U-A-AA)GU GUAGa-uaa- ga-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> uguGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( --uuu---)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------a auauuauauu 1501 ------guuu -cau---auu -----uuaaa a--------g uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aaua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----AAUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga-------c ga-(-uuuuu a-a)------ uca------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------- -uua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 ---aauca)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|acu acuugaacaa u--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA----- -------~|| ||| // LOCUS N.vespul.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L31842 L31842 LOCUS NSE18SRRA 831 bp ds-DNA INV 20-APR-1994 DEFINITION Nosema vespula 18S ribosomal RNA gene, partial. ACCESSION L31842 KEYWORDS 18S ribosomal RNA. SOURCE Nosema vespula DNA. ORGANISM Nosema vespula Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae. REFERENCE 1 (bases 1 to 831) AUTHORS Ninham,J.A. TITLE Phylogenetic analysis of five protoctist parasites of insects JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 473763 FEATURES Location/Qualifiers rRNA <1..>831 /product="18S ribosomal RNA" /note="position 1 corresponds to position 581 of Plasmodium falciparum 18S rRNA" source 1..831 /organism="Nosema vespula" /sequenced_mol="DNA" /note="undescribed species" BASE COUNT 273 a 113 c 188 g 257 t ORIGIN LOCUS NSE18SRRA 831 bp ds-DNA INV 20-APR-1994 DEFINITION Nosema vespula 18S ribosomal RNA gene, partial. ACCESSION L31842 KEYWORDS 18S ribosomal RNA. SOURCE Nosema vespula DNA. ORGANISM Nosema vespula Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae. REFERENCE 1 (bases 1 to 831) AUTHORS Ninham,J.A. TITLE Phylogenetic analysis of five protoctist parasites of insects JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 473763 FEATURES Location/Qualifiers rRNA <1..>831 /product="18S ribosomal RNA" /note="position 1 corresponds to position 581 of Plasmodium falciparum 18S rRNA" source 1..831 /organism="Nosema vespula" /sequenced_mol="DNA" /note="undescribed species" BASE COUNT 273 a 113 c 188 g 257 t ORIGIN BASE COUNT 273 a 113 c 188 g 257 t 5072 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN NNN(NNN)NN NN|NNNNNN- N-NN-N-NNN --NNNNNNNN 61 NNNN|-NNNN NN-NNNNNNN N-NNN---NN NN|------- |-------(- ---)[----- 121 ---------- ---------- ---nnnnnn- ---------- -nnnn-nnnn nnn]------ 181 -----|---N NN|N-NNNN- NNNNN-NNNN NNNN-NNNN- NNN-NNNN-- ----NNNNNN 241 NNNN<----- ---------- ---------- ---------- ---------- ---------- 301 N>NNNNN--N NNNNNNNNN( -N-N-NN)NN NNNNN-NNN- NNN------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -NNNNNNNNN -NN|NNNNNN NN|--NNN-N NNN--NNNN- --NNNNNNN- 1141 NN(-NNNNNN N)NNN-NNNN N-|NNNNN-N NNN|NNNN-N N-NNNN|NNN -N-(NNNNN) 1201 NNN-NNNNN- NNN|NNNNNN N-NNN(NN-N NNNNNNN)NN NNNN-NNNNN (NNNN-)NNN 1261 -NNNNNN-N- ---------| NNN-NN-NN- NNNNN-NNNN -NNNNNN-N( --NNNN--)N 1321 NNNN-N-NNN -|N|NNNNNN NNNN-NN--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ----->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----AAUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-A|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uu-ga ga-------c ga-(-uuuuu a-a)------ uca------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------- uuua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 ---aauca)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|acu acuugaacaa u--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-U-C CGUAGG(UGA A)CCUGC-GN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS Nosema.sp. 5903 bp RNA RNA 29-MAY-1996 DEFINITION Nosema sp.; . ACCESSION D85501 KEYWORDS . SOURCE Nosema sp. ORGANISM Nosema sp. REFERENCE 1 (bases 1 to 1247) AUTHORS Inoue,T. TITLE Direct Submission JOURNAL Bioresource Sciences, Nihon Univ.; Kameino 1866, Fujisawa, Kanagawa 252, Japan (E-mail:tinoue@ddbj.nig.ac.jp, Tel : 0466-83-2563(ex.401), Fax:0466-83-2573) Submitted (21-MAY-1996) to the DDBJ/EMBL/GenBank databases. Tadashi Inoue, Lab. Nucleic Acid Science,, College of STANDARD No information REFERENCE 2 (sites) AUTHORS Hatakeyama,Y., Kawakami,Y., Iwano,H., Inoue,T. and Ishihara,R. TITLE Comparison of secondary structures of small subunit ribosomal RNA from five microsporidia pathogenic to the silk worm, Bombyx mori JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D85501 BASE COUNT 404 a 168 c 290 g 385 t 4656 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- --gacauuu- ---------- ---------- -ga]------ 181 -----|---a aa|a-ugga- CUGCU-CAGU AAUA-CUUA- CUU-UAUU-- ----UAAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 u-ugaaa--A UAACUACGU( -U-A-AA)GU GUAGA-UAA- GA-------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> UGUGUACAGU -AA|GAGUAA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( --UUU---)U 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --aauauuau 1501 ---auuguuu -cau---auu -----guaaa a--------g uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---augauua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aaua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC AAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-acau--- ---------- ----GAUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga------ga auu(---uuc u--)-----a auuc------ -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GC-|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[uu---- ---------- ---------- ---------- -uua-uau-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------aa]- --|------- ---------- GACA-GAC-A -C-A(----- 5041 ----auc-)A GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g a--------- ---------- 5281 ---(uauaua a---)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------- u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCC-GU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|acu acuugaacaa u--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAAG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UGA----- -------~|| ||| // LOCUS E.cunicu.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon cunuculi. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cunuculi. ORGANISM Encephalitozoon cunuculi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07255 LOCUS EZOSRRNA 1299 bp ds-DNA INV 01-DEC-1992 DEFINITION Encephalitozoon cunuculi small ribosomal RNA gene. ACCESSION L07255 KEYWORDS small ribosomal RNA. SOURCE Encephalitozoon cunuculi DNA. ORGANISM Encephalitozoon cunuculi Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Apansporoblastina. REFERENCE 1 (bases 1 to 1299) AUTHORS Hartskeerl,R.A., Schuitema,A.R., Van Gool,T. and Terpstra,W.J. TITLE Nucleotide sequence of the small ribosomal RNA gene from Encephalitozoon cuniculi JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..23 /note="PCR primer based on V. necatrix srRNA sequence; putative" rRNA 1..1299 /product="small ribosomal RNA" primer_bind complement(1276..1299) /note="PCR primer based on V.necatrix srRNA sequence; putative" BASE COUNT 296 a 231 c 448 g 324 t ORIGIN BASE COUNT 296 a 231 c 448 g 324 t 4604 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---u ua|g-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCGG( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ugugugu -gcg---agu -----gcaaa --------gg ggucgcaugu ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---AAUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac a--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-gucc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUGGAAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 -augccu-gu ga-------g ugc(---aug ---)-----g cau------- --g-agg--c 4141 augcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---uacg-)G AGCA-A-GGA GGGG-AUGGA AAAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCACU ACGAU--a-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-U----- -GUG-A-GGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 ugg-acgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-aUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS E.cunicu.2 5903 bp RNA RNA 17-AUG-1998 DEFINITION Encephalitozoon cuniculi.. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 (bases 1 to 1247) AUTHORS Peyretaillade,E., Biderre,C., Peyret,P., Duffieux,F., Metenier ,G., Gouy,M., Michot,B. and Vivares,C.P. TITLE Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote, with a unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core JOURNAL Nucleic Acids Res. 26, 3513-3520 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AJ005581 LOCUS ECU5581 8871 bp DNA INV 17-AUG-1998 DEFINITION Encephalitozoon cuniculi complete rDNA unit (16S, 5.8S, 23S, ITS1 and IGS). ACCESSION AJ005581 NID g3426080 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; IGS; intergenic spacer; internal transcribed spacer 1; ITS1; large subunit; small subunit. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi Eukaryota; Microsporidia; Unikaryonidae; Encephalitozoon. REFERENCE 1 (bases 1 to 8871) AUTHORS Peyretaillade,E., Biderre,C., Peyret,P., Duffieux,F., Metenier,G., Gouy,M., Michot,B. and Vivares,C.P. TITLE Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote, with a unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core JOURNAL Nucleic Acids Res. 26, 3513-3520 (1998) REFERENCE 2 (bases 1 to 8871) AUTHORS Peyretaillade,E. TITLE Direct Submission JOURNAL Submitted (16-APR-1998) Peyretaillade E., LBCP UPESA CNRS 6023, Laboratoire de Protistologie Mol. et Cell., Universite Blaise Pascal Clermont Ferrand II, 63177 Aubiere cedex, FRANCE FEATURES Location/Qualifiers source 1..8871 /organism="Encephalitozoon cuniculi" /db_xref="taxon:6035" misc_feature 1..1748 /note="intergenic spacer, IGS" rRNA 1749..3048 /product="small subunit ribosomal RNA" misc_feature 3049..3083 /note="internal transcribed spacer 1, ITS1" rRNA 3084..5570 /note="5.8S and large subunit genes" /product="5.8S ribosomal RNA and large subunit ribosomal RNA" misc_feature 5571..8871 /note="integenic spacer, IGS" BASE COUNT 1480 a 1799 c 2994 g 2597 t 1 others BASE COUNT 294 a 231 c 451 g 324 t 4603 others ORIGIN 1 |~~~~~~~~~ ~~~~~CAUCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---U UA|G-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCGG( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ugugugu -gcg---agu -----gcaaa --------gg ggucgcaugu ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---AAUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac a--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-gucc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 -augccu-gu ga-------g ugc(---aug ---)-----g cau------- --g-agg--c 4141 augcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---uacg-)G AGCA-A-GGA GGGG-AUGGA AGAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCACU ACGAU--a-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-U----- -GUG-A-GGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 ugg-acgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-aUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAGCAGC AGGAUCA--- 5881 --guau~~~~ ~~~~~~~~|| ||| // LOCUS E.cunicu.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon cuniculi. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L17072 LOCUS EZORGSMALL 1299 bp ds-DNA INV 27-MAY-1993 DEFINITION Encephalitozoon cuniculi small ribosomal RNA gene, complete. ACCESSION L17072 KEYWORDS 18S ribosomal RNA; small ribosomal RNA; srRNA. SOURCE Encephalitozoon cuniculi DNA. ORGANISM Encephalitozoon cuniculi Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1299) AUTHORS Pieniazek,N.J., Moura,H., Slemenda,S.B. and Visvesvara,G.S. TITLE Differentiation of microsporidial opportunistic parasites Encephalitozoon cuniculi and E. hellem by amplification of the small ribosomal RNA coding region JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /standard_name="PCR primer based on V. necatrix srRNA" /note="putative" rRNA 1..1299 /standard_name="srRNA; 18S rRNA-like" /product="small ribosomal RNA" /note="putative" primer_bind complement(1273..1299) /standard_name="PCR primer based on V. necatrix srRNA" /note="putative" source 1..1299 /organism="Encephalitozoon cuniculi" /sequenced_mol="DNA" /note="rabbit isolate provided by J.A. Shadduck and E.S. Didier" BASE COUNT 295 a 231 c 449 g 324 t ORIGIN BASE COUNT 295 a 231 c 449 g 324 t 4604 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---U UA|G-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCGG( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ugugugu -gcg---agu -----gcaaa g-------gg gucgcaugu- ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---AAUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac a--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-gucc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 -augccu-gu ga-------g ugc(---aug ---)-----g cau------- --g-agg--c 4141 augcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---uacg-)G AGCA-A-GGA GGGG-AUGGA AGAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 ugg-acgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS E.cunicu.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon cuniculi. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 (bases 1 to 1247) AUTHORS Charlie Vossbrinck JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39107 LOCUS EZORGOA 1298 bp DNA INV 24-AUG-1995 DEFINITION Encephalitozoon cuniculi small subunit ribosomal RNA gene. ACCESSION L39107 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Encephalitozoon cuniculi DNA. ORGANISM Encephalitozoon cuniculi Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Unikaryonidae; Encephalitozoon. REFERENCE 1 (bases 1 to 1298) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954753 FEATURES Location/Qualifiers source 1..1298 /organism="Encephalitozoon cuniculi" /sequenced_mol="DNA" rRNA 1..1298 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" primer_bind complement(1278..1298) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" BASE COUNT 295 a 231 c 447 g 325 t ORIGIN BASE COUNT 295 a 231 c 447 g 325 t 4605 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---U UA|G-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCgg( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ugugugu -gcg---agu -----gcaaa g-------gg gucgcaugu- ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GGA UGCUG-CAG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---AAUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-gucc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUACG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 -augccu-gu ga-------g ugc(---aug ---)-----g cau------- --g-agg--c 4141 augcg----- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---UACG-)G AGCA-A-GGA GGGG-AUGGA AGAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCACU ACGAU--a-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 ugg-acgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS E.cunicu.5 5903 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon cuniculi. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z19563 ID ECSRRNAX standard; DNA; INV; 1273 BP. XX AC Z19563; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE E.cuniculi gene for small ribosomal RNA XX KW small ribosomal RNA. XX OS Encephalitozoon cuniculi OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Microsporida; Apansporoblastina. XX RN [1] RP 1-1273 RA Tanowitz H., Zhu X., Wittner M., Cali A., Weiss L.; RT "Nucleotide sequences of the small ribosomal RNA of RT Encephalitozoon cuniculi"; RL Nucleic Acids Res. 21:1315-1315(1993). XX RN [2] RP 1-1273 RA Weiss L.; RT ; RL Submitted (11-JAN-1993) on tape to the EMBL Data Library by: RL Weiss L., Albert Einstein College of Medicine, Pathology, 1300 RL Morris Park Avenue, Bronx, New York, N.Y, U.S.A, 10461 XX CC *source: clone=Ec7, Ec8; XX FH Key Location/Qualifiers FH FT allele replace(1..1273,"") FT rRNA 1..1273 FT /product="small ribosomal RNA" XX SQ Sequence 1273 BP; 291 A; 224 C; 438 G; 320 T; 0 other; BASE COUNT 291 a 224 c 438 g 320 t 4630 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAG --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGC---UU GU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaacuc- ---------- -uuug-uggg gga]------ 181 -----|---U UA|G-CGGA- CGGCU-CAGU GAUA-GCAC- GAU-GAUU-- ----UGUUUG 241 CGGG<----- ---------- ---------- ---------- ---------- ---------- 301 a>ugagca-G UAGCUGCGG( -G-A-AA)CU GCAGa-uag- ugguc----- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGGCAAGU -AA|GUUGUG GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGC-A GAC|GGGA-U A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGGUU- CCG|GAGAAG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---ug-gugu -gcg---agu ----gcaaag gga--auggc uauuguu--g uau-->G-UU 1561 GGAG|GG-CA A-GCUC-GGG U-G(CCA-GC -AGCC|GC-G GU-UA)AUUG AA-|UCCUGC 1621 C-AAUUGG|G UUGAU--GGA UGCUG-CCG| UUA--AAAUG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------guug uguaugucuu 2821 -uguguguga -ug-uuugug guugugug-u ggauguagug --augugugu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGAG(GU-G AAA---)UGC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAGCG-G AA--(-GA-G )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU aauguUGUUG -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacggguc a--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----ugugu -u-g-cc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GC GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGC UC[uga-agg 4081 aaugccu-gu ga-------- ggc(---aug ---)-----g cauu------ -----gg--c 4141 augcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GGC|CU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)-CU-UU- -GUC(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACG-GUG-U -U-C(----- 5041 ---uac--)G AAGC-A-AGG AGGG-AUGGA AGAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAG GCGG-GCUGC A-CGCGCAAC UAGAU--A-g auggcg---- ---------- 5281 ---(-cuuc- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----ugccu g-c-u----- -GUG-AgGGG AUGAAGCUG( UGUAA--G)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AGC-GGC (-UGACGAA- )GCUGC-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAC--- 5641 uggaacgaa- -gauc----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--gag-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAAG GU-------- -----A-A-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS E.hellem.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19070 LOCUS EZOSRRNAX 1314 bp ds-DNA INV 03-JUN-1993 DEFINITION Encephalitozoon hellem small ribosomal RNA gene sequence. ACCESSION L19070 KEYWORDS 18S-like rRNA; small ribosomal RNA. SOURCE Encephalitozoon hellem (library: CDC 0291.V213; from Dr. E.S. Didier) DNA. ORGANISM Encephalitozoon hellem Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1314) AUTHORS Pieniazek,N.J., Moura,H., Slemenda,S.B. and Visvesvara,G.S. TITLE Differentiation of microsporidial opportunistic parasites Encephalitozoon cuniculi and E. hellem by amplification of the small ribosomal RNA coding region JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="PCR primer based on V. necatrix srRNA; putative" rRNA 1..1314 /product="small ribosomal RNA" /note="18S rRNA-like srRNA; putative" primer_bind complement(1288..1314) /note="PCR primer based on V. necatrix srRNA; putative" source 1..1314 /organism="Encephalitozoon hellem" /sequenced_mol="DNA" /tissue_lib="CDC 0291.V213; from Dr. E.S. Didier" BASE COUNT 323 a 208 c 423 g 360 t ORIGIN BASE COUNT 323 a 208 c 423 g 360 t 4589 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagcc- ---------- -uuua-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGAUUG 241 GGAG<----- ---------- ---------- ---------- ---------- ---------- 301 c>cuggau-G UAACUGUGG( -G-A-AA)CU GCAGg-uaa- guucu----- ----(----) 361 ---------- -------(-- --)--|---- -- -GUACCGAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCCU--( --uauu--)- 1321 GGGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------aaga 1501 ---uguuua- -gca---agu -----auaaa u-------uu guugugauu- ----->UACU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAG 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAUG UCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------uu uguaugucuu 2821 -uu-gaguga -ug-uuuaug guuuuuag-u ggauguaguu --uuauugua ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAAGA-G AAGC(-GAAG )--GC|U--- GUGUUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UUUGUGG -UGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- guuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gucc--- ---------- ----GAGA(- 3661 GAAA-)UCUU -AAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-ag- 4081 ugagugu-ga ga-------g ugu(--uuuu ---)-----a cau------- --g-aug--c 4141 uuacgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UACGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -uu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACU-GUG-C -U-C(----- 5041 ---uaug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--a-g augccu---- ---------- 5281 ---(-augu- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----gggcu a-c-U----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AG-AAU-GAU (-UGAACAA- )GUUAU-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(ga ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucu u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS E.hellem.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39108 LOCUS EZORGOB 1314 bp DNA INV 24-AUG-1995 DEFINITION Encephalitozoon hellem small subunit ribosomal RNA gene. ACCESSION L39108 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Encephalitozoon hellem DNA. ORGANISM Encephalitozoon hellem Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Unikaryonidae; Encephalitozoon. REFERENCE 1 (bases 1 to 1314) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954754 FEATURES Location/Qualifiers source 1..1314 /organism="Encephalitozoon hellem" /sequenced_mol="DNA" rRNA 1..1314 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" primer_bind complement(1294..1314) /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" BASE COUNT 324 a 209 c 422 g 359 t ORIGIN BASE COUNT 324 a 209 c 422 g 359 t 4589 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GGCU AA-GCCAUGC A-UGU---UU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagcc- ---------- -uuua-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGAUUG 241 GGAG<----- ---------- ---------- ---------- ---------- ---------- 301 c>cuggau-G UAACUGUgg( -G-A-AA)CU GCAGg-uaa- guucu----- ----(----) 361 ---------- -------(-- --)--|---- -- -GUACCGAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuauu-)- 1321 -GGGGA-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------aaga 1501 ---uguuua- -gca---agu -----auaaa u-------uu guugugauu- ----->UACU 1561 GGAG|GG-CA ACGU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAG 1621 U-AGAGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAUG UCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------uu uguaugucuu 2821 -u-ugaguga -ug-uuuaug guuuuuag-u ggauguaguu --uuauugua ----->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--UGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGAAGA-G AAGC(-GAAG )--GC|U--- GUGUUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UUUGUGG -UGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac ---------- ----(----u guuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gucc--- ---------- ----gaGA(- 3661 GAAA-)UCUU -AAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-ag- 4081 ugagugu-ga ga-------g ugu(--uuuu ---)-----a cau------- --g-aug--c 4141 uuacgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU UAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UACGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -uu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACU-GUG-C -U-C(----- 5041 ---UAUG-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG--CGGC A-CGCGCACU ACGAU--a-g augccu---- ---------- 5281 ---(-augu- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----gggcu a-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AG-AAU-GAU (-UGAACAA- )GUUAU-U-U -UGAAUGUG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(ga ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucu u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Encep.sp.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L16867 LOCUS EZORGSSB 1295 bp ds-DNA INV 02-AUG-1993 DEFINITION Encephalitozoon sp. small subunit ribosomal RNA gene. ACCESSION L16867 KEYWORDS small subunit ribosomal RNA. SOURCE Encephalitozoon sp. (individual_isolate HEL17B1d) DNA. ORGANISM Encephalitozoon sp. Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1295) AUTHORS Hartskeerl,R.A., Schuitema,A.R., Van Gool,T. and Terpstra,W.J. TITLE Sequence heterogeneity between various microsporidial small subunit ribosomal RNA genes JOURNAL Unpublished (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1295) AUTHORS Hartskeerl,R.A. TITLE Direct Submission JOURNAL Submission received (May 18 1993) via Authorin E-mail by Genbank STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..23 /note="based on V.necatrix srRNA sequence; putative" rRNA 1..1295 /product="small subunit ribosomal RNA" primer_bind 1272..1295 /note="based on V.necatrix srRNA sequence; putative" source 1..1295 /organism="Encephalitozoon sp." /isolate="HEL17B1d" /germline /sequenced_mol="DNA" BASE COUNT 318 a 222 c 441 g 314 t ORIGIN BASE COUNT 318 a 222 c 441 g 314 t 4608 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUGUUCU 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCGG( -G-A-AA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- CGAGCCAAGU -AA|GCUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CGGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---guuuuuu -ucg---agu -----guaaa g-------ga gucgagau-u ----->GAUU 1561 GGAG|GG-CA A-GU-C-GCG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---uuuguau 2821 -gucuuuguu -ug-ggggau uauguccuga uguggaugua --agagguuu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----AUGA(- 3661 GAAA-)UCUU -GAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-a-g 4081 cgggcag-ga ga-------- -ac(-gagg- ---)-----a cgg------- --g-aug--c 4141 gugcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---uuug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-aggg- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----agccu g-c-u----- -gug-a-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-C AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Encep.sp.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L16866 LOCUS EZORGSSA 1295 bp ds-DNA INV 02-AUG-1993 DEFINITION Encephalitozoon sp. small subunit ribosomal RNA gene. ACCESSION L16866 KEYWORDS small subunit ribosomal RNA. SOURCE Encephalitozoon sp. (individual_isolate HEL14M5) DNA. ORGANISM Encephalitozoon sp. Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1295) AUTHORS Hartskeerl,R.A., Schuitema,A.R., Van Gool,T. and Terpstra,W.J. TITLE Sequence heterogeneity between various microsporidial small subunit ribosomal RNA genes JOURNAL Unpublished (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1295) AUTHORS Hartskeerl,R.A. TITLE Direct Submission JOURNAL Submission received (May 18 1993) via Authorin E-mail by Genbank STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..23 /note="based on V.necatrix srRNA sequence; putative" rRNA 1..1295 /product="small subunit ribosomal RNA" /note="putative" primer_bind 1272..1295 /note="based on V.necatrix srRNA sequence; putative" source 1..1295 /organism="Encephalitozoon sp." /isolate="HEL14M5" /sequenced_mol="DNA" BASE COUNT 318 a 221 c 441 g 315 t ORIGIN BASE COUNT 318 a 221 c 441 g 315 t 4608 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCC 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCGG( -G-A-AA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- CGAGCCAAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CGGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- --------ga 1501 ---guuuuuu -ucg---agu -----guaaa g-------ga gucgagauu- ----->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---uuuguau 2821 -gucuuuguu -ug-ggggau uauguccuga uguggaugua --agagguuu g---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----AUGA(- 3661 GAAA-)UCUU -GAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCUA-CG )CGGG--GCA ACUUACCGGU UC[uga-a-g 4081 cgggcag-ga ga-------- -ac(-gagg- ---)-----a cgg------- --g-aug--c 4141 gcgcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---uuug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-aggg- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -----agccu g-c-u----- -gug-a-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS V.lymantri 5903 bp RNA RNA 11-JAN-1997 DEFINITION Vairimorpha lymantriae. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha lymantriae. ORGANISM Vairimorpha lymantriae. REFERENCE 1 (bases 1 to 1247) AUTHORS Charlie Vossbrinck TITLE From: "Charles R. Vossbrinck" JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF033315 LOCUS AF033315 1393 bp DNA INV 02-JAN-1999 DEFINITION Vairimorpha lymantriae small subunit ribosomal RNA gene sequence. ACCESSION AF033315 NID g4104169 KEYWORDS . SOURCE Vairimorpha lymantriae. ORGANISM Vairimorpha lymantriae Eukaryota; Microsporidia; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 1393) AUTHORS Vossbrinck,C.R. TITLE rDNA sequence of Vairimorpha lymantriae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1393) AUTHORS Vossbrinck,C.R. TITLE Direct Submission JOURNAL Submitted (06-NOV-1997) Soil and Water, Connecticut Agricultural Experimental Station, 123 Huntington Street, New Haven, CT 06504, USA FEATURES Location/Qualifiers source 1..1393 /organism="Vairimorpha lymantriae" /db_xref="taxon:27968" rRNA 1..1393 /product="small subunit ribosomal RNA" BASE COUNT 464 a 192 c 308 g 429 t BASE COUNT 405 a 173 c 285 g 382 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------c auuu------ -ga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-AAUU-- ----UUAUGU 241 A-ca------ ---------- ---------- ---------- ---------- ---------- 301 u-uugaaa-c uaacuaCGU( -U-A-AA)GU GUAG-auaa- gau------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GUGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u uauau)uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------aa uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|AAUA ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u------ 4081 uuau-u---- ---------- --a-uuuu-- -gagacgauu cuuaauca-- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------u u-a------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 --aauca-)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--A-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-U----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -CUUGAACAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS V.necatr.1 5903 bp RNA RNA 28-FEB-1992 DEFINITION Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix.; ribosomal RNA. ACCESSION Y00266 M24612 KEYWORDS ribosomal RNA. SOURCE Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. ORGANISM Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. Vairimorpha necatrix. REFERENCE 1 (bases 1 to 1244) AUTHORS Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. Vossbrinck,C.R. TITLE Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission Direct Submission JOURNAL Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . Submitted (26-MAR-1987) Charles R. Vossbrinck, Office of Ag. Ent+Natural History Survey, 607 E. Peabody, Champaign I1. 61820 . STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic REFERENCE 1 (bases 1 to 1244) AUTHORS No information JOURNAL No information STANDARD No information REFERENCE 2 (bases 1 to 1244) AUTHORS Vossbrink,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD full automatic COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 Y00266 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 NCBI gi: 10868 BASE COUNT 401 a 172 c 293 g 378 t 4659 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------- --uau----- gga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UAAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 a>AUUAGU-A UAACUGCGU( -U-A-AA)GU GUAGCAUAA- GAC------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AUAUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u ucuau)uguu ---------- ---------- 1501 ---------u -cau---auu -----guaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|AAUA ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-agau--- ---------- ----gaUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAG-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u------ 4081 uuau-ucaga ga-------- aga(uuuuc- -ga)------ ucu------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCACCA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------u uaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 --aauca-)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--A-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-U----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -CUUGAACAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS V.necatr.2 5903 bp RNA RNA 15-SEP-1989 DEFINITION Vairimorpha necatrix.; 16S ribosomal RNA. ACCESSION M24612 KEYWORDS 16S ribosomal RNA. SOURCE Vairimorpha necatrix. ORGANISM Vairimorpha necatrix. REFERENCE 1 (bases 1 to 1244) AUTHORS Vossbrinck,C.R., Maddox,J.V., Friedman,S., DeBrunner-Vossbrinck ,B.A. and Woese,C.R. TITLE Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes JOURNAL Nature 326, 411-414 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M24612 NCBI gi: 162548 BASE COUNT 401 a 172 c 293 g 378 t 4659 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------- --uau----- gga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UAAUGU 241 AUUA<----- ---------- ---------- ---------- ---------- ---------- 301 a>AUUAGU-A UAACUGCGU( -U-A-AA)GU GUAGCAUAA- GAC------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AUAUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAA-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u ucuau)uguu ---------- ---------- 1501 ---------u -cau---auu -----guaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGC|AAUA ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AGAG(AU-G AAA---)UGU G-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- a-uu-gua-u -u-agau--- ---------- ----gaUA(- 3661 GAAA-)UUU- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAG-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u------ 4081 uuau-ucaga ga-------- aga(uuuuc- -ga)------ ucu------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCACCA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[ua---- ---------- ---------- ---------u uaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------ua]- --|------- ---------- GACA-GAC-A -C--(----- 5041 --aauca-)- GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--A-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-U----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUGU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -CUUGAACAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS Vairim.sp. 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39114 LOCUS VAIRGOA 1245 bp DNA INV 24-AUG-1995 DEFINITION Vairimorpha sp. small subunit ribosomal RNA gene. ACCESSION L39114 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Vairimorpha sp DNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 1245) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954829 FEATURES Location/Qualifiers source 1..1245 /organism="Vairimorpha sp." /sequenced_mol="DNA" rRNA 1..1245 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" primer_bind complement(1225..1245) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" BASE COUNT 404 a 173 c 286 g 382 t ORIGIN BASE COUNT 404 a 173 c 286 g 382 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---ga----- ---------- -cauu----- uga]------ 181 -----|---A AA|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-AAUU-- ----UUAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uugaaa-C UAACUACGU( -U-A-AA)GU GUAGA-UAA- GAU------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GUGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a aua(-----u uauau)uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -aagc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga-u----- ----(----- auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUa- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga-------- cga(uucuu- -aa)------ uca------- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACAA G--ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------u a--------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------U UAUA-GAC-A -gac(ac--- 5041 --aauca-)- gUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g au-------- ---------- 5281 ---(-auaua ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -CUUGAACAA U--AUG-U-A UUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa~~~~~ ~~~~~~~~|| ||| // LOCUS Vai.sp.ar 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF031539 BASE COUNT 334 a 251 c 426 g 241 t 4651 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN NNN(NNN)NN NN|NNNNNN- N-NN-N-NNN --NNNNNNNU 61 CAGA|-GAUU AA-GCCAUGC A-AGC---CA GC|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa---- ---------- ---ga-uuac gga]------ 181 -----|---G CG|G-CGUA- CGGCU-CAGU AGGA-CAGG- GAA-A-UC-- ----UAGCCA 241 CGAA<----- ---------- ---------- ---------- ---------- ---------- 301 ->-ggagg-A UAACCACGG( -U-A-AG)CU GUGGC-UAA- aacg------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AGCGUGGGU -GA|GUUCUU GG|--CCU-A UCA--GCUA- --GUCGGUA- 1141 CG(-GUAAGG G)CGU-ACCG A-|GGCAA-U AAC|GGGU-A A-CGGG|GAA -U-(CGGG-) 1201 GUU-CGAUU- CCG|GAGAGG A-AGC(CU-G AGAAACG)GC UACC-ACGUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GG- AAAUU-ACCC -ACUUGG--( --AGGA--)- 1321 CCAG-A-GGU -|A|GUUAUG GGGC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- -------aaa 1501 ---gauga-g -aaa---agu -----guaaa --------aa gcuuuuug-a augc->GACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 G-AGCUUC|U GUGUG--AGU UGCUG-CGG| UUA--AAAAG UGCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----gggag caggccagca 2821 -gaaaaggug -gg-gaauca cgccuagcau agugcaggaa c-ugggaccu ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAc|cGga ---------- 3001 --gagGGGCA AC|--CUAAU UCUUGGG-CG -AGGG(GU-G AAA---)ACU G-CUGA-C-C 3061 CUGAG-AGG- A-GGAACA-G AGGC(-GAAG )--GC|G--- GUUGUC-cg| gg-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---GGUCUGA -CGA-U|CA- A-GUACGUGA 3301 GCAGGAGGA- UCAAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GACAC)CG-U -CGUAG|UUC CU--GCA-GU AAACGAUGCC GAC|gg|--- 3421 --ggcag-ca gg-------- ----(----- -ggaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---c-uug-u -u-gccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- --AGUGU-ac GGGC|-U|C- CGGGGAUAGU AC--GG-GC( --GCAA-)GC 3721 UUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G GU-UAAUUUG (ACUCAA-CG )CGGG--ACA ACUUACCGGG GC[ag--gcg 4081 acga-gaagc gaa------g gau-gaugaa g-ag------ auucacagac uga-uug--c 4141 guc-gc---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GU-GU- GGU-G-CAUG |GCC|GU-UU UUA|ACACG- U|GGG(-GUG 4261 A-)CUU-GU- caGG(UU-AA AU)CCGAUA- AC-GCGUGAG ACCCU-GU|- ---------- 4321 ------(--- --)[gua--- ---------- ---------- -------gau ggaa-a---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -----uac]- --|------- ---------- GACG-GGA-C -A-U(----- 5041 --GGCAA-)G UGUC-A-GGA AGAG-CGGGU CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CG- 5221 C-AGA-UGUU CCGG-GCGCC A-CGCGCACU ACAUU--g-g acggcgauau au-------- 5281 ---(-gaaa- ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------a 5461 ugaggagccg u-c-c----g uggu-u-GGG AUUGACGCU( UGUAA--U)U GCGUCAUG-A 5521 ACGUGG-AAU U--CCUAGUA GU-GGG-CAG (-UCAUUAA- )CUGCA-C-G -CGAAUGAG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-U AA-GAU---G GA-AGUG--- 5641 cgg-augag- -gucggu--- ---------- ---------- ---------- ---------- 5701 -------(-a cg----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---gc-|cg- -GACGAAUCU G--UGC-U-U GUAG-AUUGG AU-ACAA-N- 5821 NNNNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS V.corneum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39112 LOCUS VIFRGOB 1259 bp DNA INV 24-AUG-1995 DEFINITION Vittaforma corneum small subunit ribosomal RNA gene. ACCESSION L39112 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Vittaforma corneae DNA. ORGANISM Vittaforma corneae Eukaryota; Archezoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae. REFERENCE 1 (bases 1 to 1259) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954830 FEATURES Location/Qualifiers source 1..1259 /organism="Vittaforma corneae" /sequenced_mol="DNA" rRNA 1..1259 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" primer_bind complement(1239..1259) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" BASE COUNT 382 a 221 c 377 g 279 t ORIGIN BASE COUNT 382 a 221 c 377 g 279 t 4644 others ORIGIN 1 |--------- -----CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CUAA|-GAUU AA-GCCAUGC A-UGU---UU CC|------- |-------(- ---)[----- 121 ---------- ---------- --------u- ---------- -caau-ca-- ---]------ 181 -----|---G GG|A-CGAA- UAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----UAGUCU 241 GGCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->guguag-A UAAC-ACgu( -G-A-AA)AU GUAGC-UAA- ggga------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -AGGCAGAAU -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACAG-U GAC|GGUU-G A-CGGG|AAA -U-(UAGG-) 1201 GUU-UUGUA- CCG|GAGAGG G-AGC(CU-G AGAGAUU)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -ACUCU---( --uugc--)- 1321 -AGG-A-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaag 1501 ---augag-- -uau---cuu -----guaaa --------ga gggaua---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ----uagaag -gg-caaaga gagaugcgag gucucacagu g-cgaugaug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cCga ---------- 3001 --UGGGGAAC AU|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAG )--GC|G--- AUGUUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AGG ---CAUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGUA- UCGAAAGUC( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -AGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuca-uu g--------- ----(----- gaca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cag-u -g-ggca--- ---------- ----ggGA(- 3661 GAAA-)UCUU AGAGUU---C GGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GAA ACUUACCAGG GC[caa--gu 4081 acuu-gug-- ---------- -ua(--gaaa ---)------ c--------- ----gag--c 4141 aauacag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UG- -ACC(UU-AA AU)GGUUGA- AU-GAGUGAG AUCUU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------g ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ---GCAC-)G GAAC-A-GGA AGGA-AAAGG CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-AG A|UGCC|CU- 5221 C-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g cagguagaga g--------- 5281 ---(-agaga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -caggaaggu g-c-u----- -CAG-A-UGG ACUAUGUGC( UGUAA--G)G CACAUACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-UGU-GUA (-UCAACAA- )UGGAU-A-U -UGAAUAAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGCCCGU CACUAU-C-U CA-GAU---G UU-UUUC--- 5641 agg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cc ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa u--gaa-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAACAAG GU-------- -----U-G-C GGUUGG(UGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS Ame.michae 5903 bp RNA RNA 11-JAN-191 DEFINITION Ameson michaelis. ACCESSION No information KEYWORDS No information. SOURCE Ameson michaelis. ORGANISM Ameson michaelis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L15741 LOCUS AMXRGSS 1275 bp ss-DNA INV 01-JUL-1993 DEFINITION Ameson michaelis ribosomal RNA small subunit (ssrRNA) gene. ACCESSION L15741 KEYWORDS ribosomal RNA small subunit. SOURCE Ameson michaelis DNA. ORGANISM Ameson michaelis Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Pereziidae. REFERENCE 1 (bases 1 to 1275) AUTHORS Zhu,X., Wittner,M., Tanowitz,H., Cali,A. and Weiss,L. TITLE Nucleotide sequence of the small subunit rDNA of Ameson michaelis JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1275 /product="ribosomal RNA small subunit" /gene="ssrRNA" source 1..1275 /organism="Ameson michaelis" /sequenced_mol="DNA" BASE COUNT 392 a 215 c 335 g 333 t ORIGIN BASE COUNT 392 a 215 c 335 g 333 t 4628 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN GGU(UGA)UU CU|GCCUGA- C-GU-agaAC --GCUAGUCU 61 CACA|-GAUU CA-GCCAUGC A-AGU---ag ua|u------ |-------(- ---)[----- 121 ---------- ---------- ---g------ ---------- --uau----- gua]------ 181 -----|---a ua|c-ACAA- UGGCU-CAGU A-UC-gagua uag-cuuu-- ----gcucuc 241 caag<----- ---------- ---------- ---------- ---------- ---------- 301 ->augug--a uacuuucag( -g-a-aa)ca gaaaa-uaa- agcauc---- ----(----) 361 ---------- -------(-- --)--|---- -- gagaggagaa -ga|agcacu ca|--CCU-A UCA--GUUA- --GUAGGUA- 1141 UG(-GUAAGG G)CAU-ACCU A-|GACGA-A GAC|GGGU-A --CGGG|GAA -G-(Gcaa-) 1201 CUU-CGAUU- CCG|GAGAGG G-CGC(CUUU AGAGAUG)GC GACC-AGUUC (UAAG-)GAG 1261 -UGCAGC-A- ---------| GGC-UC-GA- AACUU-ACCG -AAuuau--( ---aga--)- 1321 auag-A-GGU -|A|GUGAUG GAAAcGU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- -uu(------ -auau)ag-- ---------- ---------- 1501 --------aa -aua---cug -----guaaa --------gc aaguauuauu ----->AACU 1561 G-AG|G---A A-AG-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|CUCCAG 1621 G-AGCUUA|U UCGAU----A UGUUG-CGG| UUA--AAACG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ----cggcug ggacugaccu 2821 -guaaucuau -uu-ggucaa cagauagaua ggggcaguag c-aaguugga aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -agag|caau ---------- 3001 --uuggUGUC AG|--CUaau gguaUGG-GG -AGGG(GU-A AAG---)UCU G-AGGA-U-C 3061 CUGc--agg- a-GGAGCA-A AGGC(-GUAA )--GC|A--- CUGACA-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------UUG ---AUUCUGU -UGA-U|CA- A-GGACAGAG 3301 GCUAGAGGA- UCGAAUACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -AGUAG|UUC UA--GCA-GU ga------CC GAU|GA|--- 3421 --ugauu-uu g--------- ----(----- ccu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----uau-g -c-a-a---- ---------- ----UAGA-- 3661 GAAA--UCAA --------aa uaga--U|C- UCCGGGGAGU AC--AU-GC( --GCA--)CA 3721 GG---AACUU -AA-G--A-A -UUG|AC-GG -AA-GCUAG- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-UU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-AG )CGGA--AAA GCUUACCAAG CU[-----ua 4081 uuuauucaac ga-------- gu---auuua ---------- -uc------- --c-gag--a 4141 gua-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ --A|UG-GU- -GU-G-CAUG |GCC|GU-UC CUA|ACACA- U|GGA(-GUG 4261 A-)UUU-UG- -uga(uuaac cu)uccGUA- AU-CUGUGUA AAuccuca|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------u aaua-gcu-u ---------- 5041 ---guuu--g -aaa-a-gaa caau-ucgag caAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGUC|CU- 5221 U-UGA-UAGC UUGG-GCUGC A-CGCGCAAU ACAAU--U-u uuau------ ---------- 5281 ---(guagua ag--)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------a uau-a----- -gau-a-GGG AUUGAGGGC( UG-AA--A)G CGCUCAUG-A 5521 ACACGG-AAU A--GCUAGUA AC-GUG-AGU (-UCAAUAU- )ACGGC-G-A -UGAAUAUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-G AA-GAU---g ga-guga--- 5641 uuu-uugag- -ucaau---- ---------- ---------- ---------- ---------- 5701 -------(ua ua----)--- ---------- ---------- ---------- ---------- 5761 ---------- --auug|gcu acuugaauga g--uua-u-u cuaa-aacCG GU-ACAA-G- 5821 UCGUAACAAG GC-------- -----U-A-C GGUUGA(AGA A)UCAGCAGU AGGAUUA--- 5881 --GCG----- -------~|| ||| // LOCUS Micro57864 5903 bp RNA RNA 29-DEC-1998 DEFINITION Microsporidium 57864.. ACCESSION No information KEYWORDS No information. SOURCE Microsporidium 57864. ORGANISM Microsporidium 57864. REFERENCE 1 (bases 1 to 1244) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Sciences, Australian National University, Canberra, ACT 0200, Australia Submitted (25-FEB-1997) Botany and Zoology, School of Life STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U90885 LOCUS M5U90885 7292 bp DNA INV 29-DEC-1998 DEFINITION Microsporidium 57864 16S ribosomal RNA gene, partial sequence, internal transcribed spacer, 5.8S, 23S and 5S ribosomal RNA genes, complete sequence. ACCESSION U90885 NID g4063830 KEYWORDS . SOURCE Microsporidium 57864. ORGANISM Microsporidium 57864 Eukaryotae; Microsporidia. REFERENCE 1 (bases 1 to 7292) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Submitted (25-FEB-1997) Botany and Zoology, School of Life Sciences, Australian National University, Canberra, ACT 0200, Australia FEATURES Location/Qualifiers source 1..7292 /organism="Microsporidium 57864" /strain="Anderson" /db_xref="taxon:57864" /dev_stage="spore resting-stage" rRNA <1..1245 /product="16S ribosomal RNA" misc_RNA 1246..1274 /note="internal transcribed spacer" rRNA 1275..1364 /note="covalently linked" /product="5.8S ribosomal RNA" rRNA 1365..3818 /product="23S ribosomal RNA" rRNA 4098..4216 /product="5S ribosomal RNA" BASE COUNT 2477 a 839 c 1276 g 2700 t BASE COUNT 403 a 172 c 286 g 384 t 4658 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAUUCC 61 CUAA|-GAUU AA-CCCAUGC A-UGU---UU UU|------- |-------(- ---)[----- 121 ---------- ---------- ---gac---- ---------- --auu----- uga]------ 181 -----|---a aa|A-UGGA- CUGCU-CAGU AAUA-CUCA- CUU-UAUU-- ----UUAUGU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->uugaaa-c UAACUACGU( -U-A-AA)GU GUAGa-uaa- gaug------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --UGUACAGU -AA|GAGUGA GA|--CCU-A UCA--GCUA- --GUUGUUA- 1141 AG(-GUAAUG G)CUU-AACA A-|GGCAG-U GAC|GGGU-A A-CGGU|AUU -A-(CUUUG) 1201 UAA-U-AUU- CCG|GAGAAG G-AGC(CU-G AGAGACG)GC UACU-AAGUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGG-GC-GA- AACUU-GACC -UAUGGA-U( ---uuu--)A 1321 UCUG-A-GGC -|A|GUUAUG GGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------a a---uauuau a---u-uguu ---------- ---------- 1501 ---------u -cau---auu -----uuaaa --------ag uauaugaggu gauu->AAUU 1561 GGAG|GG-CA A-AU-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UG-|UUCCAA 1621 G-AGUGUG|U AUGAU--GAU UGAUG-CAG| UUA--AAAAG UCCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---auauuua ag--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AAGc|aAua ---------- 3001 --UGAGGUGU AC|--UGUAU AGUUGGG-AG -AAAG(AU-G AAA---)UGU A-ACGA-C-C 3061 CUGAC-UGG- A-CGAACA-G AAGC(-GAAA )--GC|U--- GUACAC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUUUU -UGA-A|CA- A-GGACGUAA 3301 GCUGGAGGA- GCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|GA|--- 3421 --uguga-ua uga------- ----(----u auauu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --uu-gua-u -u-acau--- ---------- ----aaUA(- 3661 GAAA-)UUA- -GAGUUU-UU UGGC|-U|C- UGGGGAUAGU AU--GA-UC( --GCAA-)GA 3721 UUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AA-GAAUA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GUA ACUUACCAAU AU[u---uua 4081 uuau-uuuga ga------cg auu(-uuu-- ---)------ aauca----- -ga-gaa--u 4141 gau-aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UU UCA|AUGGA- U|GCU(-GUG 4261 A-)AGU-UU- -UGA(UU-AA UU)UCAACA- AG-ACGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[--uauu a--------- ---------- ---------- ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GAC-A -C-A(----- 5041 ----auc-)A GUGU-A-GGA AGGA-AAGGA UUAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 C-AGA-CAUU UUGG-GCUGC A-CGCGCAAU ACAAU--a-g a--------- ---------- 5281 ---(uauaua a---)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------- u-c-u----- -UUA-U-GGG AUAAUAUUU( UGUAA--G)A GAUAUUUG-A 5521 ACUUGG-AAU U--GCUAGUA AA-UUU-UAU (-UAAAUAA- )GUAGA-A-U -UGAAUGUG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AU-AUAU--- 5641 guu-gugaa- -auuagu--- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---ac-|ua- -cuugaacAA U--aug-u-a uUAG-AUCUG AU-AUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Endo.schub 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39109 LOCUS ENLRGOA 1252 bp DNA INV 24-AUG-1995 DEFINITION Endoreticulatus schubergi small subunit ribosomal RNA gene. ACCESSION L39109 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Endoreticulatus schubergi DNA. ORGANISM Endoreticulatus schubergi Eukaryota; Archezoa; Microspora; Microsporea; Microsporida. REFERENCE 1 (bases 1 to 1252) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954752 FEATURES Location/Qualifiers source 1..1252 /organism="Endoreticulatus schubergi" /sequenced_mol="DNA" rRNA 1..1252 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" primer_bind complement(1232..1252) /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" BASE COUNT 359 a 240 c 399 g 254 t ORIGIN BASE COUNT 359 a 240 c 399 g 254 t 4651 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---ggaac-- ---------- ---------- --a]------ 181 -----|---A GG|A-CGAA- CAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----CAGUCU 241 GUCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->gucaag-A UAACCACgc( -G-A-AA)GU GUGGC-UAA- gagg------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GGACAGAAC -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACGG-U GAC|GGUU-G A-CGGG|GAA -U-(GAGG-) 1201 GUU-CUAUA- CCG|GAGAGG G-AGC(CU-G AGAGAUA)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -Acug----- --uuug---- 1321 gagg-a-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaga 1501 ---aagag-- -ugc----uu -----guaaa --------ga gaagca---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ------ugga -ga-cggaaa gagaggcgga gccucuuuga g-augcucug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAg|cCaa ---------- 3001 --CAGGGGGC AC|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAA )--GC|G--- GUGCUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GGG ---UGUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGGA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -UGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuc-ggu g--------- ----(----- gcaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cacgg -g-gca---- ---------- ----ggGA(- 3661 GAAA-)UCUU AGAGUU---C GGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GAA GCUUACCAGG GC[caa--gu 4081 g-cu-gug-- ---------- -ga(--gaaa ---)------ g--------- ----gag--c 4141 aguacag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UG- -GCC(UU-AA AU)GGCUGA- AU-GAGUGAG AUCUU-UG|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ----cac-)G GAAC-A-GGA AGGG-GAGG- CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-AG A|UGCC|CU- 5221 U-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g cacguagacg u--------- 5281 ---(-agaga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -acaacacgu g-c-u----- -GAG-G-UGG ACUGUGCUC( UGCAA--G)G GGCACACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-CGC-CCA (-UCACCAG- )UGGGC-G-U -UGAAUCAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGUCCGU CACUAU-C-U CA-GAU---G UU-UUUC--- 5641 ggg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cc ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa c--gga-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAGCAAG GU-------- -----U-G-C GGUCGG(UGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS Ent.salmon 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U10883 LOCUS ESALSRRN 1275 bp DNA INV 08-OCT-1994 DEFINITION Enterocytozoon salmonis small subunit ribosomal RNA gene. ACCESSION U10883 KEYWORDS . SOURCE Enterocytozoon salmonis. ORGANISM Enterocytozoon salmonis Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Apansporoblastina; Enterocytozoonidae; Enterocytozoon. REFERENCE 1 (bases 1 to 1275) AUTHORS Da Silva,A.J., Hedrick,R.P., Slemenda,S.B. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Enterocytozoon salmonis (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1275) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (15-JUN-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 555701 FEATURES Location/Qualifiers source 1..1275 /organism="Enterocytozoon salmonis" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA; putative" rRNA 1..1275 /product="small subunit ribosomal RNA" primer_bind complement(1252..1275) /note="PCR primer based on V. necatrix SSU-rRNA; putative" BASE COUNT 354 a 248 c 374 g 299 t ORIGIN BASE COUNT 354 a 248 c 374 g 299 t 4628 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GGU --GCUAGCCU 61 CUAA|-GAUU UA-GCCAUGC A-UGC---UU UG|------- |-------(- ---)[----- 121 ---------- ---------- --ugaaccc- ---------- --aga-cggg gga]------ 181 -----|---a cg|g-CGAA- CGGCU-CAGU AAUG-UUGC- GGU-GAUC-- ----UGCUCU 241 GGUU<----- ---------- ---------- ---------- ---------- ---------- 301 g>agaaag-A UAACCACGG( -U-A-AA)CU GUGGc-uaa- g--------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> AGACCAGAAU -GA|GCUGCA AC|--CCU-A UCA--GUUU- --GUUGGAA- 1141 GU(-GUAAAA G)ACU-CCCA A-|GACGU-C GAC|GGGU-A A-CGGG|AAA -U-(CAGU-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UCCC-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GUCC -ACUCUU--( --ugga--)- 1321 GAGG-A-GAC -|A|GUUAUG AGGC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- -------gau 1501 ---uaaaaga -gcga--agu -----guaaa c--------a ccuucgugua acgc->AAUU 1561 GGAG|GG-CA A-GU-UUUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AA-|CUCCAA 1621 G-AGUGCC|C AUGGU--GGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----uagau gcaauuaaa- 2821 ----gggugc -gg-aucaag cg-cacugag u----uuguu g-aguuguag c---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cGga ---------- 3001 --UAGGGAGC AU|--GGUAU AGGUUGG-CG -AAGA(AU-G AAA---)UCU C-AAGA-C-C 3061 CAACC-UGG- A-CCAACU-G AGGC(-GAAA )--GC|G--- GUGCUC-UU| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---CAUCCGA -GGA-U|CA- A-GGACGAAG 3301 GCUGGAGGA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -UGUAG|UUC CA--GCA-GU AAACUAUGCC GAC|au|--- 3421 --ucucu-gu cc-------- ----(----- --agc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---g-gac-g -g-ggaa--- ---------- ----GGGA(- 3661 GAAA-)UCUU --AGUUU-UC GGGC|-U|C- UGGGGAUAGU AC--GC-UU( --GCAA-)GA 3721 GUG-AAACUU -AAAGcgAAA -UUG|AC-GG -AA-GGACA- -CUAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUACU|G CU-UAAUUUG (ACUCAA-CG )CGGG--AAA ACUUACCAGG GU[caa--gu 4081 ucu--ccg-- -------u-- ag-(aucgag u--)-----a cgu------- -ga---g--g 4141 ggaacga--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UU- -AGC(UU-AA AU)GCUGAA- AC-CAGUGAG AUCUU-CU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- -a-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GGU-G -C-C(----- 5041 ---aucc-)G GCAC-A-GGA GGGC-GAAGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UG A|UGCC|CU- 5221 U-AGA-UAUC CUGG-GCUGC A-AGUGCAAU ACAAU--a-u ccaug-ucg- ---------- 5281 ---(aucaag aaag)[g--- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 --ugauuaug g-a-u----- -gaG-C-AGG AUUAGCUCU( UGUAA--A)U GAGCUAUG-A 5521 AUGAGG-AAU U--CCUAGUA AC-AGU-GUC (-UCACUAA- )GGCAU-U-G -UGAAUGCG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CACUAU-U-U CA-GAU---G GC-CAUG--- 5641 aag-augaa- -gagc----- ---------- ---------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gu- -ucugaauau u--cau-g-u cUAG-AUAAA GU-ACAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN~~~~~ ~~~~~~~~|| ||| // LOCUS G.atherina 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U15987 LOCUS GAU15987 1335 bp DNA INV 01-NOV-1994 DEFINITION Glugea atherinae small subunit ribosomal RNA gene. ACCESSION U15987 KEYWORDS . SOURCE Glugea atherinae. ORGANISM Glugea atherinae Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporoblastina; Glugeidae; Glugea. REFERENCE 1 (bases 1 to 1335) AUTHORS Da Silva,A.J., Slemenda,S.B., Ditrich,O. and Pieniazek,N.J. TITLE Small subunit rRNA sequence of Glugea atherinae (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1335) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (17-OCT-1994) Norman J. Pieniazek, Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 562115 FEATURES Location/Qualifiers source 1..1335 /organism="Glugea atherinae" primer_bind 1..21 /note="PCR primer based on N. corneum SSU-rRNA; putative" rRNA 1..1335 /product="small subunit ribosomal RNA" primer_bind complement(1312..1335) /note="PCR primer based on N. corneum SSU-rRNA; putative" BASE COUNT 384 a 259 c 428 g 264 t ORIGIN BASE COUNT 384 a 259 c 428 g 264 t 4568 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAGUCU 61 CAUA|-GGUU AA-GCCAUGC A-UGU-gcaa gc|------- |-------(- ---)[----- 121 ---------- ---------- ---gaagc-- ---------- -guaa---gu gga]------ 181 -----|---g cg|g-CGCA- AGGCU-CAGU AACG-GGCG- AGU-AUUU-- -----GAUCU 241 CCUA<----- ---------- ---------- ---------- ---------- ---------- 301 ->gagugg-A UAUCCUCUG( -U-A-AC)CG GAGGg-caa- aaca------ ----(----) 361 ---------- -------(-- --)--|---- -- -UAGGAGAGU -AA|GAA-GC CA|U-CCC-A UCA--GUUA- --GUAAGUA- 1141 GG(-GUAAGG G)CCU-ACUU A-|GACGA-A GAC|GGGU-A --CGGG|GAA -U-(UAUC-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGACG)GC UACC-AGGUC (CAAG-)GAC 1261 -AGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCG -CAGCCu-g( --cauu--)c 1321 aGGG-C-GGU -|A|GUAAGG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaaa 1501 ---acaa--u -gug---cgg -----gcaaa --------aa acgcac---u aga-->UACA 1561 GGAG|GA-CA A-GA-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UACC AG-|CUCCUG 1621 G-AGUGUC|U AUGAUauGAU UGCUG-CAG| UUA--AAGAG UUCGUAGUCg |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- aagugguuau aacgguguaa 2821 -caggccuuc -uc-ucaagg aggguuaugc gccgugauuc c-auggaaua a---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cGuu ---------- 3001 --UAGGGGCC AG|--GUUAU UAAGCGA-CG -AGGG(GU-G AAA---)UCU G-GUGA-C-U 3061 CGCUU-AGG- A-GCAACA-G AGGC(-GAAA )--GC|G--- CUGGCC-AG| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCG ---AAUCCGA -UGA-U|AA- A-GGACGUAG 3301 GCUAGAGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CG-U -UGUAG|UUC UA--GCA-GU AAACGAUGCC GAU|AC|--- 3421 --cgugg-ug cg-------- ----(----- gaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---c-gcgac -g-cgg---- ---------- ----aaGA(- 3661 GAAA-)UC-- -GAGUAG--- -GGC|-C|C- UGGGGAGAGU AC--AC-GC( --GCAA-)GC 3721 GAG-AAAUUU -AAAG-gAAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--ACA GCUUACCAGG CC[cga---- 4081 -cgg-ccgga cga------- -gu(guugu- a-c)------ acgau----- --a-ggu--c 4141 gaa------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UA ACG|ACGAG- U|GAG(-GUG 4261 A-)CUU-UU- -GGG(UU-AA AU)CCGGGA- AG-UAGUGAG ACCCC-UA|- ---------- 4321 ------(--- --)[cc---- ---------- ---------- ---------g aaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ------gg]- --|------- ---------- GACA-GGU-G -C-C(----- 5041 ---GAAA-)- GCAC-A-GGA AGGA-AGGGU CAAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 C-AGA-UGGU CUGG-GCUGC A-CGCGCACU ACAGU--G-g ucauagaaau ---------- 5281 ---(gaaacg auag)[a--- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 auuaaagaug a-u-c-g--- -AGA-G-GGA A-UGAGCUU( UGUAA--G)A GGCUCAGG-A 5521 ACGAGG-AAU U--GCUAGUA AU-CGC-GGA (CUCAUUAA- )GACGC-G-A -UGAAUACG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-G AA-GAU---G GA-GUCA--- 5641 ggc-gcgaa- -caagc---- ---------- ---------- ---------- ---------- 5701 -------(ga ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- gagugagug- ca-gga-u-u cUAG-AUGUG AU-ACAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Ichthyo.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39110 LOCUS IHHRGOA 1352 bp DNA INV 24-AUG-1995 DEFINITION Ichthyosporidium sp. small subunit ribosomal RNA gene. ACCESSION L39110 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Ichthyosporidium sp DNA. ORGANISM Ichthyosporidium sp. Eukaryota; Archezoa; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae. REFERENCE 1 (bases 1 to 1352) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954761 FEATURES Location/Qualifiers source 1..1352 /organism="Ichthyosporidium sp." /sequenced_mol="DNA" rRNA 1..1352 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" primer_bind complement(1332..1352) /note="PCR primer binding site; based on small subunit ribosomal RNA of Vairimorpha necatrix; putative" BASE COUNT 386 a 270 c 418 g 278 t ORIGIN BASE COUNT 386 a 270 c 418 g 278 t 4551 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAGUCU 61 CUAA|-AGUU AA-GCCAUGG A-UGU---CU AA|------- |-------(- ---)[----- 121 ---------- ---------- ---gcaaag- ---------- -cgua-aguc -ga]------ 181 -----|---g cg|g-caca- -gGCU-CAGU AACg--ggc- gaA-UAUU-- ----UAAUCU 241 CCUC<----- ---------- ---------- ---------- ---------- ---------- 301 ->gagugg-A UAUCCUCug( -U-A-AC)CG GAGGg-caa- aacac----- ----(----) 361 ---------- -------(-- --)--|---- -- -GGGGAGAGU -AA|GACGCC AG|--UCC-A UCA--GUUA- --GUAAGUA- 1141 GG(-GUAAGG G)CCU-ACUU A-|GACGA-A UAC|GGAU-A --CGGG|GAA -U-(UAUC-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGACG)GC UACC-GGGUC (CAAG-)GAC 1261 -AACAGC-A- ---------| GGC-GC-GA- AAAUU-ACCG -CAGCCu-g( --cauu--)- 1321 ---c-A-GGU C|G|GUAGUA AGGA-GA--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- cgu(------ -guaa)acg- ---------- ---------- 1501 --------au -gug---cag -----guaaa --------ga augcacugua ----->UACA 1561 GGAG|GA-CA A-GA-C-UGG U-G(CCA-GC -ACCC|GC-U GU-AA)UACC AG-|CUCCUG 1621 G-AGUGUC|U AUGAU--GAU UGCUG-CAG| UUA--AAGCG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -aaccggguu gaauugcgug 2821 -acagucaga -cu-cucaag gugugaugag cgcugugauu c-uggggaau aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|uGuu ---------- 3001 --UAGGGGCC AG|--GGUAU UAAACGG-CA -AGCG(GU-G AAA---)UGU G-UUGA-CCC 3061 GUUUA-UGG- A-GCGACA-G AGGC(-GAAA )--GG|C--- UGGCCA-GG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- --------CA ---AAUCCGA -UGA-U|AA- A-GGACGUAG 3301 GCUAGAGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CG-U -UGUAG|UUC UA--GCA-GU AAACAAUGCC GAU|GU|--- 3421 --ugugg-ug ccg------- ----(----- uaa------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- --cg-gac-g -c-a-a---- ---------- ----aaGA(- 3661 GAAA-)UCUA ---GUA---- GGGC--C|C- UGGGGAGAGU AC--AC-GC( --GCAA-)CA 3721 GGA-AAUUUA -AAGG--AAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--ACA CCUUACCGGG CC[cac-ggc 4081 cac---acga ---------- gug---ugac a--------- cac------- -ga-uagccg 4141 ag-------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|CG-UU AAC|GACAA- G|UGA(-GUG 4261 A-)UCU-UU- -GGG(UU-AA GU)CCGUAA- AU-UAGUGAG ACCCC-AG|- ---------- 4321 ------(--- --)[------ ---------- ---------- -------caa ag-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GGU-G -C--(----- 5041 ---gcaaa)- GCAC-A-GGA AGGA-UGGGU CAAGGA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGGU CCGG-GCUGC A-CGCGCACU ACAGU--g-g ucgccgaaau uu-------- 5281 ---(-agaua ua--)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------g 5461 agcuaaaggc gau-c----- -GAG-A-GGG AAUGAGCUU( UGGAA--G)A GGCUCAGG-A 5521 ACGUGG-AAU U--GCUAGUA AU-CGC-GGA (CUCAUUAA- )GACGC-G-A -UGAAUACG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-G AA-UAC---G GU-GCUC--- 5641 GGCG-CGAG- CAAGgu---- ---------- ---------- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---uc-|acu --gagcgagc gc-aag-gua cCGG-AUCUG AU-ACAA-G- 5821 UCGUAACAAG GU-------- -----a-G-C UGUAGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --UAA~~~~~ ~~~~~~~~|| ||| // LOCUS V.corneae 5903 bp RNA RNA 11-JAN-191 DEFINITION Vittaforma corneae subsp. was Nosema corneum. ACCESSION No information KEYWORDS No information. SOURCE Vittaforma corneae subsp. was Nosema corneum. ORGANISM Vittaforma corneae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U11046 LOCUS NCORNSRR 1237 bp DNA INV 08-OCT-1994 DEFINITION Nosema corneum small subunit ribosomal RNA gene. ACCESSION U11046 KEYWORDS . SOURCE Nosema corneum. ORGANISM Nosema corneum Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 1237) AUTHORS Da Silva,A.J., Slemenda,S.B., Visvesvara,G.S. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Nosema corneum (Microsporida) Isolated from a Patient with AIDS JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1237) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (20-JUN-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 555732 FEATURES Location/Qualifiers source 1..1237 /organism="Nosema corneum" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA; putative" rRNA 1..1237 /product="small subunit ribosomal RNA" primer_bind complement(1214..1237) /note="PCR primer based on V. necatrix SSU-rRNA; putative" BASE COUNT 372 a 215 c 374 g 276 t ORIGIN BASE COUNT 372 a 215 c 374 g 276 t 4666 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CUAA|-GAUU AA-GCCAUGC A-UGU---UU CC|------- |-------(- ---)[----- 121 ---------- ---------- --------g- ---------- -caau-ca-- ---]------ 181 -----|---G GG|A-CGAA- UAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----UAGUCU 241 GGCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->guguag-A UAACUACGU( -G-A-AA)AU GUAGC-UAA- ggg------- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> aAGGCAGAAU -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACAG-U GAC|GGUU-G A-CGGG|AAA -U-(UAGG-) 1201 GUU-UUGUA- CCG|GAGAGG G-AGC(CU-G AGAGAUU)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -ACUCU---( --uugc--)- 1321 -AGG-A-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaag 1501 ---augag-- -uau---cuu -----guaaa --------ga gggaua---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ----uagaag -gg-caaaga gagaugcgag gucucacagu g-cgaugaug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cCga ---------- 3001 --UGGGGAAC AU|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAG )--GC|G--- AUGUUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AGG ---CAUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGUA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -AGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuca-uu g--------- ----(----- gaca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cag-u -g-ggca--- ---------- ----GGGA(- 3661 GAAA-)UCU- -UAGAGU-UC GGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GAA ACUUACCAGG GC[caa--gu 4081 a-uu-gug-- ---------- -ua(--gaaa ---)------ c--------- ----gag--c 4141 aauacag--- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UG- -ACC(UU-AA AU)GGUUGA- AU-GAGUGAG AUCUU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------g ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ---GCAC-)G GAAC-A-GGA AGGA-AAAGG CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-AG A|UGCC|CU- 5221 C-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g ca-------- ---------- 5281 ---(------ ----)[ggua gagagagaga caggaagg-- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ---------u g-c-u----- -CAG-A-UGG ACUAUGUGC( UGUAA--G)G CACAUACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-UGU-GUA (-UCAACAA- )UGGAU-A-U -UGAAUAAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGCCCGU CACUAU-C-U CA-GAU---G UU-UUUC--- 5641 agg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cc ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa u--gaa-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(NNN N)NNNNN-NN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS S.intest.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19567 LOCUS SEJSSRR 1283 bp ss-rRNA RNA 16-JUN-1993 DEFINITION Septata intestinalis small subunit ribosomal RNA sequence. ACCESSION L19567 KEYWORDS small subunit ribosomal RNA. SOURCE Septata intestinalis (strain kt1) rRNA. ORGANISM Septata intestinalis Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 1283) AUTHORS Zhu,X., Wittner,M., Tanowitz,H.B., Cali,A. and Weiss,L.M. TITLE Small subunit rRNA sequence of septata intestinalis JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..1283 /organism="Septata intestinalis" /strain="kt1" /sequenced_mol="rRNA" BASE COUNT 321 a 218 c 430 g 314 t ORIGIN BASE COUNT 321 a 218 c 430 g 314 t 4620 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-ugg- gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCGG( -G-UAAA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- -CAGCCAAGU -AA|GUGUUA GG|--CCU-A UCA--GCUG- --GUUGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|-GCGG-A GAC|GGGA-G A-CGGG|GA- -U-(CGGG-) 1201 GUU-U-AUU- CCG|GAGAGG --AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAA--)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A--GC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---uuuuu-- -ucg---agu -----guaaa --------gg ag-cga---g auu-->GAUU 1561 GGAG|GG-CA A-G--C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uugu 2821 -augucuuug -uu-uggggg auuauguccu gauguggaug u-aagagguu ug--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(GAAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( A-UA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 ---acgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-gu gGGU|-U|C- UGGGGAUAGU AU--GC-UU( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-agc 4081 -gggcag-ga ga-------- -ac(--gagg ---)------ acgg------ --g-aug-cg 4141 gcgcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GCC(-GUG 4261 AA)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---uuug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA UGCG-GCGGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-aggga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ------gccu gac-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 uggaacgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAGCAGC AGGAUCA--- 5881 --gua----- -------~|| ||| // LOCUS S.intest.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09929 LOCUS SIU09929 1295 bp DNA INV 09-JUN-1994 DEFINITION Septata intestinalis CDC:V297 small subunit ribosomal RNA gene. ACCESSION U09929 KEYWORDS . SOURCE Septata intestinalis ORGANISM Septata intestinalis Eukaryotae; Hypochondria; Microspora; Haplophasea; Glugeida; Encephalitozoonidae; Septata. REFERENCE 1 (bases 1 to 1295) AUTHORS Da Silva,A.J., Slemenda,S.B., Visvesvara,G.S. and Pieniazek,N.J. TITLE Small Subunit rRNA Sequence of Septata intestinalis CDC:V297 (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1295) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (20-MAY-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 497943 FEATURES Location/Qualifiers rRNA 1..1295 /product="small subunit ribosomal RNA" primer_bind 1..21 /note="PCR primer based on V. necatrix SSU-rRNA, putative" primer_bind complement(1269..1295) /note="PCR primer based on V. necatrix SSU-rRNA, putative" source 1..1295 /strain="CDC:V297" /organism="Septata intestinalis" BASE COUNT 319 a 220 c 441 g 315 t ORIGIN BASE COUNT 319 a 220 c 441 g 315 t 4608 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCGG( -G-A-AA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- CGAGCCAAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CGGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---uuuuu-- -ucg---agu -----guaaa --------gg agucga---g auu-->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -----uuugu 2821 -augucuuug -uu-uggggg auuauguccu gauguggaug u-aagagguu ug--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-gu gGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-agc 4081 -gggcag-ga ga-------- -ac(--gagg ---)------ acgg------ --g-aug--c 4141 gcgcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---uuug-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--A-g auggcg---- ---------- 5281 ---(-aggga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ------gccu g-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-gcAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAUUAGC AGGAUCA--- 5881 --uaa----- -------~|| ||| // LOCUS S.intest.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L39113 LOCUS SEJRGOA 1299 bp DNA INV 24-AUG-1995 DEFINITION Septata intestinalis small subunit ribosomal RNA gene. ACCESSION L39113 KEYWORDS PCR primer; small subunit ribosomal RNA. SOURCE Septata intestinalis DNA. ORGANISM Septata intestinalis Eukaryotae; Microsporidia; Haplophasea; Glugeida; Encephalitozoonidae; Septata. REFERENCE 1 (bases 1 to 1299) AUTHORS Baker,M.D., Vossbrinck,C.R., Didier,E.S. and Shadduck,J.A. TITLE Small subunit ribosomal DNA phylogeny of various microsporidia with emphasis on AIDS related forms JOURNAL J. Eukaryot. Microbiol. (1995) In press COMMENT NCBI gi: 954764 FEATURES Location/Qualifiers source 1..1299 /organism="Septata intestinalis" /sequenced_mol="DNA" rRNA 1..1299 /note="putative" /product="small subunit ribosomal RNA" primer_bind 1..18 /note="based on small subunit ribosomal RNA of Vairimorpha necatrix; PCR primer binding site; putative" BASE COUNT 318 a 222 c 443 g 316 t ORIGIN BASE COUNT 318 a 222 c 443 g 316 t 4604 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAU --GCUAUUCU 61 CUGG|-GACU AA-GCCAUGC A-UGU---UG AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaa-cc- ---------- --uug-uggg gga]------ 181 -----|---U UG|A-CGGA- CGGCU-CAGU GAUA-GUAC- GAU-GAUU-- ----UGGUUG 241 GCGG<----- ---------- ---------- ---------- ---------- ---------- 301 g>agagcu-G UAACUGCgg( -G-A-AA)CU GCAGg-uagg gggc------ ----(----) 361 ---------- -------(-- --)--|---- -- -GAGCCAAGU -AA|GUUGUA GG|--CCU-A UCA--GCUG- --GUAGUUA- 1141 GG(-GUAAUG G)CCU-AACU A-|GGCGG-A GAC|GGGA-G A-CGGG|GGA -U-(CGGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGAUG)GC UACU-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-GCCU -AAUCC---( --uuug--)- 1321 -GGG-A-GGC -|G|GUUAUG AGAA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gagu 1501 ---uuuuu-- -ucg---agu -----guaaa --------gg agucga---g auu-->GAUU 1561 GGAG|GG-CA A-GU-C-GGG U-G(CCA-GC -AGCC|GC-C GU-AA)UACC UG-|CUCCAA 1621 U-AGUGUC|U AUGGU--GAA UGCUG-CAG| UUA--AAAAG UCCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -----uuugu 2821 -augucuuug -uu-uggggg auuauguccu gauguggaug u-aagagguu ug--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GCAg|aGga ---------- 3001 --CGAGGGGC AC|--CGGAU AGUUGGG-CG -AGGG(GU-G AAA---)UAC G-AAGA-C-C 3061 CUGAC-UGG- A-CGGACA-G AAGC(-GAAG )--GC|U--- GUGCUC-UU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACU ---UAUGUGA -CGA-U|GA- A-GGACGAAG 3301 GCUAGAGGA- UCGAAAUCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UUUAG|UUC UA--GCA-GU AAACGAUGCC GAC|UG|--- 3421 --gacgggac u--------- ----(----- auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----agugu -u-gugc--- ---------- ----auGA(- 3661 GAAA-)UCUU -GAGUAU-GU GGGU|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GA 3721 GUG-AAACUU -GAAG--AGA -UUG|AC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--GCA ACUUACCGGU UC[uga-agc 4081 -gggcag-ga ga-------- -ac(--gagg ---)------ acgg------ --g-aug--c 4141 gcgcgg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|CG-GU- GGU-G-CAUG |GCC|GU-UU GAA|AUGGA- U|GGC(-GUG 4261 A-)GCU-UU- -GGA(UU-AA GU)UGCGUA- AG-AUGUGAG ACCCU-UU|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-GUG-C -U-C(----- 5041 ---UUUG-)G GGCA-A-GGG AGGA-AUGGA ACAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UU A|UGCC|CU- 5221 G-AGA-UGAA GCGG-GCGGC A-CGCGCACU ACGAU--a-g auggcg---- ---------- 5281 ---(-aggga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ------gccu g-c-u----- -GUG-A-GGG AUGAAGCUG( UGUAA--U)G GGCUUCUG-A 5521 ACGUGG-AAU U--CCUAGUA AU-AAC-GAU (-UGAACAA- )GUUGU-U-U -UGAAUGGG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-U AA-GAU---G AC-GCAG--- 5641 ugg-acgaa- -gauu----- ---------- ---------- ---------- ---------- 5701 -------(gg aa----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gg- -ucugagucc u--ucg-u-g uUAG-AUAAG AU-AUAA-G- 5821 UCGUAACAUG GC-------- -----U-G-C UGUUGG(AGA A)CCAGCAGC AGGAUCA--- 5881 -guauuug-- -------~|| ||| // LOCUS Thel.solen 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF031538 BASE COUNT 414 a 225 c 346 g 387 t 4531 others ORIGIN 1 |~~~~~~~~g aauucCACCA GGU(UGA)UU CU|GCCUGG- U-AU-G-UGU --GCUAGCGU 61 CAAG|-GAUU UA-GCCAUGC A-UGC---UU AC|------- |-------(- ---)[----- 121 ---------- ---------- ---gaaccc- ---------- -acgu--ggg -ga]------ 181 -----|---G UG|G-CGGA- UAGCU-CAGU AAUA-CAGU- UAU-AACA-- ----UAAUCU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->aaaugg-A UAACCUUGU( -C-A-AG)AU AAGGC-UAA- UACagu---- ----(----) 361 ---------- -------(-- --)--|---- -- -UUGUAGGAU -UG|GUUUCU GA|--CCU-A UCA--GUUA- --GUAUGUU- 1141 UU(-GUAAGG G)AGA-ACAU A-|GACUA-U GAC|GGGU-A A-CGGG|GGA -U-(GCAC-) 1201 GUC-UGAUA- CCG|GAGAGG A-AGC(CU-U AGAAACC)GC UUUC-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-ACCC -AAUUAU-U( -guauu--)G 1321 AUAG-A-GGU -|A|GUUAUG ACGC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------g uuaa-----g auu---uuaa au-------- ---------- 1501 ----ugaa-a -cu----uca -----uuaaa ---------- -gauggu-ua a-gc->GACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGUGCA|U AUACA----- UGCUG-UAG| UUA--GAAAG UUUGUAGCCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- guuuauggau uguuuuugau 2821 -aauaguuau -uc-uccaaa agagcuaauu uuaacuaauu c-auaaaaau a---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAg|cGga ---------- 3001 --UGAAGGUA AU|--UGUAU UCACCAG-CA -AGAG(GU-A AAA---)UUU G-AUGA-C-C 3061 UGGUG-AGG- A-CAUUCC-G AGGC(-GAAA )--GC|G--- AUUGCC-UA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUUGA -UGG-U|AA- A-GAACGUAA 3301 GCCGGAGGA- UCAAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UUC CG--GCC-GU AAAUUAUGCC AAC|uu|--- 3421 --gcauc-uu gu-------- ----(----u auuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---a-caa-g -g-agca--- ---------- ----uAGA(- 3661 GAAA-)UUAA -GAGUUU-UU GGGC|-U|C- UAGGGAUAGU AA--UC-CG( --GCAA-)CG 3721 GAC-AAACUU -AAAG--AAA -UUG|GC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUAUACG|G CU-UAAUUUG (ACUCAA-CG )CGGG--AAA ACUUACCAGG GC[c----ua 4081 ugua-uaaga ga-aaguuaa cau(--ugu- ---)------ auguauacuu -gauugu--a 4141 cu--uu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UU UCA|ACACG- U|GGG(-GUG 4261 A-)CUU-GU- caGG(UU-UA UU)CCGGUA- AC-GUGUGAU GUGCA-GU|- ---------- 4321 ------(--- --)[augcaa c--------- ---------- -------uaa cuaa-u---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -guuguga]- --|------- ---------- GACU-UCU-U -G-C(----- 5041 --GGUAA-)G CUUG-A-UGA AGAG---GCG CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGUGUAAU ACAGU--G-g guauuucaau auuu------ 5281 ---(-aauag ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- -------aag 5461 ua--aauuua c-c-c----g aGAC-A-GGG AUCAUGCUU( UGUAA--G)A AGCUUGUG-A 5521 ACAUGG-AAU U--CCUAGUA AU-CGC-UGC (-UCACUAA- )GUAAC-G-A -UGAAUAAG- 5581 U-CCCUGUUC UU|UGCA-CA CACCGCCCGU CGCUAU-C-U GA-GAU---G GA-UGAC--- 5641 uuu-auaaa- -gaugcugcu ---------- ---------- ---------- ---------- 5701 -------(gu ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- agagg-|ca- -UUUGUGUAA G--GUC-A-A CUAG-AUUAG AU-AUAA-G- 5821 UCGUAACAAG GU-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 ---------- -------~|| ||| // LOCUS Thel.sp.ar 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF031537 BASE COUNT 351 a 175 c 289 g 315 t 4773 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNNNN NNN(NNN)NN NN|NNNNNN- N-NN-N-NNN --NNNNNNNN 61 NNNN|-NNNN NN-NNNNNNN N-NNN---NN NC|------- |-------(- ---)[----- 121 ---------- ---------- ---gaaccc- ---------- -augu--ggg -ga]------ 181 -----|---G UG|G-CGGA- UAGCU-CAGU AAUA-CAGU- UAU-AACA-- ----UAAUCU 241 ACAU<----- ---------- ---------- ---------- ---------- ---------- 301 ->aaaugg-A UAACCUUGU( -C-A-AG)AU AAGGC-UAA- UACagu---- ----(----) 361 ---------- -------(-- --)--|---- -- -AUGUAGCGU -UG|GUUUCU GA|--CCU-A UCA--GUUA- --GUAUGUU- 1141 UU(-GUAAGG G)AGA-ACAU A-|GACUA-U GAC|GGGU-A A-CGGG|GGA -U-(GCAC-) 1201 GUC-UGAUA- CCG|GAGAGG A-AGC(CU-U AGAAACC)GC UUUC-ACGUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-ACCC -AAUUAU-U( -guauu--)G 1321 AUAG-A-GGU -|A|GUUAUG ACGC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------g uuaa-----g auu---uuaa au-------- ---------- 1501 ----ugaa-a -cu----uca -----uuaaa ---------- -gauaga-ua a-gc->GACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGUGCA|U AUaca----- UGCUG-UAG| UUA--GAAAG UUUGUAGCCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- guuuauggau uguuuuugau 2821 -aauaguuau -uc-uccaaa agagcuaauu uuaacuaauu c-auaaaaau a---->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAg|cGga ---------- 3001 --UGAAGGUA AU|--UGUAU UCACCAG-CA -AGAG(GU-A AAA---)UUU G-AUGA-C-C 3061 UGGUG-AGG- A-CAUUCA-G AGGC(-GAAA )--GC|G--- AUUGCC-UA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUUGA -UGG-U|AA- A-GAACGUAA 3301 GCCGGAGGA- UCAAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UUC CG--GCC-GU AAAUUAUGCC AAC|uu|--- 3421 --gcauu-uu gu-------- ----(----u auuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---a-caa-g -g-agca--- ---------- ----uAGA(- 3661 GAAA-)UUAA -GAGUUU-UU GGGC|-U|C- UAGGGAUAGU AA--UC-CG( --GCAA-)CG 3721 GAC-AAACUU -AAAG--AAA -UUG|GC-GG -AA-GGACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUAUACG|G CU-UAAUUUG (ACUCAA-CG )CGGG--AAA ACUUACCAGG GC[c----ua 4081 ugua-uaaga ga-aaguuaa cau(--ugu- ---)------ auguauacuu -gauugu--a 4141 cu--uu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UU UCA|ACACG- U|GGG(-GUG 4261 A-)CUU-GU- caGG(UU-UA UU)CCGGUA- AC-GUGUGAU GUGCA-GU|- ---------- 4321 ------(--- --)[augcaa c--------- ---------- ---------u aau------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -guuguga]- --|------- ---------- GACU-UCU-U -G-C(----- 5041 --GGUAA-)G CUUG-A-UGA AGAG---GCG CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGUGUAAU ACAGU--g-g guauuucaau auuu------ 5281 ---(-aauag ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- -------gag 5461 ua--aauuua c-c-c----g agaC-A-GGG AUCAUGCUU( UGUAA--G)A AGNNNNNN-N 5521 NNNNNN-NNN N--NNNNNNN NN-NNN-NNN (-NNNNNNN- )NNNNN-N-N -NNNNNNNN- 5581 N-NNNNNNNN NN|NNNN-NN NNNNNNNNNN NNNNNN-N-N NN-NNN---N NN-NNNN--- 5641 nnn-nnnn-- nnnnnnn--- ---------- ---------- ---------- ---------- 5701 -------(NN NN----)--- ---------- ---------- ---------- ---------- 5761 ---------- ---NN-|NN- -NNNNNNNNN N--NNN-N-N Nnnn-NNNNN NN-NNNN-N- 5821 NNNNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS Ple.anguil 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U47052 LOCUS PAU47052 1183 bp rRNA INV 19-FEB-1996 DEFINITION Pleistophora anguillarum small subunit rRNA. ACCESSION U47052 NID g1197556 KEYWORDS . SOURCE Pleistophora anguillarum. ORGANISM Pleistophora anguillarum Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Pleistophoridae; Pleistophora. REFERENCE 1 (bases 1 to 1183) AUTHORS Hung,H.-W., Lo,C., Tseng,C., Peng,S., Chou,C. and Kou,G. TITLE Small subunit ribosomal RNA gene sequences of Pleistophora anguillarum: phylogenetic construction and PCR primers for its detection JOURNAL Unpublished REFERENCE 2 (bases 1 to 1183) AUTHORS Hung,H.-W. TITLE Direct Submission JOURNAL Submitted (25-JAN-1996) Hsu-Wei Hung, National Taiwan University, Zoology, Taipei, Taiwan, 106, ROC COMMENT NCBI gi: 1197556 FEATURES Location/Qualifiers source 1..1183 /organism="Pleistophora anguillarum" /specific_host="Japanese eel (Anguilla japonica)" rRNA 1..1183 /product="small subunit rRNA" BASE COUNT 317 a 231 c 411 g 224 t ORIGIN BASE COUNT 317 a 231 c 411 g 224 t 4720 others ORIGIN 1 |--------- -----NNNCA GGU(UGA)UU CU|GCCUGA- C-GU-G-GAC --GCUAGUUC 61 AUA-|-GGUU AA-GCCAUGC A-UGU---GU AG|------- |-------(- ---)[----- 121 ---------- ---------- ---gcgaca- ---------- -guuu--ugu gga]------ 181 -----|---G CG|G-CGGA- AGGCU-CAGU AACG-GGCG- -UC-UAUU-- ----UGAUCU 241 UCUG<----- ---------- ---------- ---------- ---------- ---------- 301 ->agacgg-A CAACCUCUG( -U-A-AC)CG GAGCC-aau- a-cguc---- ----(----) 361 ---------- -------(-- --)--|---- --<--agagg -------cac gguuacccug 421 uggcggu|gg cgugcgaaag ---------- cauugcg--- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -CGGAAGAGU -AA|GGAGCC AU|--CCC-A UCA--GUUA- --GUAAGUA- 1141 GG(-GUAAGG G)CCU-ACUU A-|GACGA-A GAC|GGGU-A --CGGG|GAA -U-(UGUG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGC(CU-G AGAGACG)GC UACC-AGGUC (CAAG-)GAC 1261 -AGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCG -AAGCC---( --uccg--)- 1321 GUGA-G-GGC -|G|GUAGUA AGGA-GA--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ---cguggaa 1501 ---acgau-- -gag---gag -----guaaa --------ga augcuc---u ggu-->AACA 1561 GGAG|Gu-CA A-GA-C-UGG U-G(CCA-GC -AUCC|GC-G -U-AA)UACC AG-|CUCCUG 1621 G-AGUGUC|U AUGAU--GAU UGCUG-CAG| UUA--AAGAG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --ggcugcgu gacuggcgug 2821 -aaaggcu-u -cu-uucaag gggggcacag cgcggggaaa g-cagaggau aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cGuU ---------- 3001 --UUGGGGCC AG|--GUUAU UAAGCGA-CG -AGAG(GU-G AAA---)UUU G-AUGA-C-U 3061 CGCUU-AGG- A-GGAACA-G AGGC(-GAAA )--GC|---- CUGGCC-AG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- --------Cg ---AAUCCGA -UGA-U|AA- A-GGACGUAG 3301 GCUAGAGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CG-U -UGUAG|UUC UA--GCA-GU AAACGAUGCC GAU|GC|--- 3421 --cgug-gug c--------- ----(----- gug------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----gcga- -c-gcgg--- ---------- ----agGA(- 3661 GAAA-)UU-- -GAGUAG--- -GGC|-C|C- UGGGGAGAGU AC--AC-G-( --GCAA-)GC 3721 GAG-AAAUUU -AAAG-GAAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--ACA GCUUACCAGG CC[cga---- 4081 -cgaccgcac ga-------g ugu(---ugu ---)-----a cacga----- ua---gg--u 4141 cg--aa---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UA ACG|ACAAG- U|GGG(-GUG 4261 A-)CCU-UU- -GGG(UU-AA GU)CCGGGA- AG-UAGUGAG ACCCC-UG|- ---------- 4321 ------(--- --)[ccuguc c--------- ---------- ---------g gc-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -ggacag-]- --|------- ---------- GACA-GGU-G -C-U(----- 5041 ---caa--)A GCAC-A-GGA AGGA-AGGGU CAAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGGC GUGG-GCUGC A-CGCGCACU ACAGU--g-g ucac-agaaa gaauc----- 5281 ---(-gcgga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- --------ga 5461 gacaauggug a-u-c----- -GAG-A-GGG AAUGAGCUU( UGCAA--G)A GGCUCAGG-A 5521 ACGAGG-AAU U--GCU-GUA AU-CNN-NNN (-NNNNNNN- )NNNNN-N-N -NNNNNNNN- 5581 N-NNNNNNNN NN|NNNN-NN NNNNNNNNNN NNNNNN-N-N NN-NNN---N NN-NNNN--- 5641 nnn-nnnnn- -nnnn----- ---------- ---------- ---------- ---------- 5701 -------(nn nn----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|nn- -nnnnnnnnn n--nnn-n-n nNNN-NNNNN NN-NNNN-N- 5821 NNNNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS Pleis.sp.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U10342 LOCUS PSU10342 1232 bp DNA INV 22-JUN-1994 DEFINITION Pleistophora sp. ATCC 50040 small subunit rRNA gene. ACCESSION U10342 KEYWORDS . SOURCE Pleistophora sp. ORGANISM Pleistophora sp. Eukaryotae; Hypochondria; Microspora; Microsporea; Microsporida; Pleistophora. REFERENCE 1 (bases 1 to 1232) AUTHORS Da Silva,A.J., Hinkle,G., Slemenda,S.B., Sogin,M.L. and Pieniazek,N.J. TITLE Small subunit rRNA sequence of Pleistophora sp. ATCC 50040 (Microsporida) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1232) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (03-JUN-1994) Norman J. Pieniazek, Division of Parasitic Diseases, Centers for Disease Control, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 501116 FEATURES Location/Qualifiers rRNA 1..1232 /product="small subunit rRNA" primer_bind 1..21 /note="PCR primer based on Vairimorpha necatrix SSU-rRNA, putative" primer_bind complement(1209..1232) /note="PCR primer based on Vairimorpha necatrix SSU-rRNA, putative" source 1..1232 /strain="ATCC 50040" /organism="Pleistophora sp." BASE COUNT 351 a 235 c 394 g 252 t ORIGIN BASE COUNT 351 a 235 c 394 g 252 t 4671 others ORIGIN 1 |--------- -----CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaaac-- ---------- ---------- --a]------ 181 -----|---A GG|A-CGAA- CAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----CAGUCU 241 GUCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->gucaag-A UAACCACGC( -G-A-AA)GU GUGGC-UAA- gagg------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -GGACAGAAC -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACGG-U GAC|GGUU-G A-CGGG|GAA -U-(GAGG-) 1201 GUU-CUAUA- CCG|GAGAGG G-AGC(CU-G AGAGAUA)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -ACugu---- --uugg---- 1321 -agg-A-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaga 1501 ---aagag-- -ugc---uug -----guaaa --------ga gaagca---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ------ugga -ga-cggaaa gagaggcgga gccucuuuga g-augcucug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAg|cCaa ---------- 3001 --cagggGGC AC|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAA )--GC|G--- GUGCUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GGG ---UGUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGGA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -UGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuc-ggu g--------- ----(----- gcaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cacg- -g-ggcg--- ---------- ----ggGA(- 3661 GAAA-)UCUU --AGAGU-UC GGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGAG--GAA GCUUACCAGG GC[caa---- 4081 -gug------ ---------c ugu(ggagaa agg-a----g cag------- ---------g 4141 acag------ -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 A-)CUU-UG- -GCC(UU-AA AU)GGCUGA- AU-GAGUGAG AUCUU-UG|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ---caca-)G GAAC-A-GGA AGG--GGAGG CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-AG A|UGCC|CU- 5221 U-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g cacguagacg u--------- 5281 ---(-acaga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -acaacacgu g-c-u----- -GAG-G-UGG ACUGUGCUC( UGCAA--G)G GGCACACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-CGC-CCA (-UCACCAG- )UGGGC-G-U -UGAAUCAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGUCCGU CACUAU-C-U CA-GAU---G UU-uuuc--- 5641 ggg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cu ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa c--gga-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUUGG(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn----- -------~|| ||| // LOCUS Pleis.sp.2 5903 bp RNA RNA 29-MAY-1996 DEFINITION Pleistophora sp.; . ACCESSION D85500 KEYWORDS . SOURCE Pleistophora sp. ORGANISM Pleistophora sp. REFERENCE 1 (bases 1 to 1248) AUTHORS Inoue,T. TITLE Direct Submission JOURNAL Tadashi Inoue, Lab. Nucleic Acid Science,, College of Bioresource Sciences, Nihon Univ.; Kameino 1866, Fujisawa, Kanagawa 252, Japan (E-mail:tinoue@ddbj.nig.ac.jp, Tel :0466-83-2563(ex.401), Fax: 0466-83-2573) Submitted (21-MAY-1996) to the DDBJ/EMBL/GenBank databases. STANDARD No information REFERENCE 2 (sites) AUTHORS Hatakeyama,Y., Kawakami,Y., Iwano,H., Inoue,T. and Ishihara,R. TITLE Comparison of secondary structures of small subunit ribosomal RNA from five microsporidia pathogenic to the silk worm, Bombyx mori JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D85500 BASE COUNT 361 a 242 c 393 g 252 t 4655 others ORIGIN 1 |--------- -----CACCA GGU(UGA)UU CU|GCCUGA- C-GU-A-GAC --GCUAGUCU 61 CUGA|-GAUU AA-GCCAUGC A-UGU---CU AU|------- |-------(- ---)[----- 121 ---------- ---------- ---gaaac-- ---------- ---------- --a]------ 181 -----|---A GG|A-CGAA- CAGCU-CAGU AAAA-CUGC- GAU-GAUU-- ----CAGUCU 241 GUCU<----- ---------- ---------- ---------- ---------- ---------- 301 ->gucaag-A UAACCACGC( -G-A-AA)GU GUGGC-uaag aggg------ ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> --GACAGAAC -AA|GACGCA GG|--ACU-A UCA--GUUA- --GUUGGUA- 1141 GU(-GUAAUG G)ACU-ACCA A-|GACGG-U GAC|GGUU-G A-CGGG|GAA -U-(GAGG-) 1201 GUU-CUAUA- CCG|GAGAGG G-AGC(CU-G AGAGAUA)GC UCCC-ACGUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-GCCC -ACUGU---( --uugg--)- 1321 -AGG-A-GGC -|A|GUUAUG AGAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ------gaga 1501 ---aagag-- -ugc---uug -----guaaa --------ga gaagca---g gag-->AAUU 1561 GGAG|GG-CA A-GU-U-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC GA-|CUCCAA 1621 G-AGUGUG|U AUGAG--AGA UGCUG-CAG| UUA--AAAAG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ------ugga -ga-cggaaa gagaggcgga gccucuuuga g-augcucug ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAG|CCAA ---------- 3001 --CAGGGGGC AC|--AGUAU ACCAGGG-CG -AGAG(AU-G AAA---)UGC C-AAGA-C-C 3061 CCUGG-UGG- A-CUGAGC-G AGGC(-GAAA )--GC|G--- GUGCUC-UU| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GGG ---UGUUCGG -UGA-U|CA- A-GGACGAAG 3301 GCUGGAGGA- UCGAAAGUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -UGUAG|UUC CA--GCA-GU AAAAGAUGCC GAC|AU|--- 3421 --gcuc-ggu g--------- ----(----- gcaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----cacg- -g-ggca--- ---------- ----GGGA(- 3661 GAAA-)UCUU --AGAGU-UC gGGC|-U|C- UGGGGAUAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAAAUU -AAAG--AAA -UUG|AC-GG -AG-CUACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAAACG )CGAG--GAA GCUUACCAGG GC[caa---- 4081 -gug------ ---------c ugu(ggagaa agg-a----g cag------- ---------g 4141 acag------ -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AA-GU- GGU-G-CAUG |GUC|GU-UG GAA|AUUGA- U|GGG(-AUG 4261 --)cuu-u-- -gcc(UU-AA AU)-gcugA- AU-GAGUGAG AUCUU-UG|- ---------- 4321 ------(--- --)[------ ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- --------]- --|------- ---------- GACA-UGU-U -C-C(----- 5041 ---CACA-)G GAAC-A-GGA AGG--GGAGG CUAUAA--CA GAU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-AG A|UGCC|CU- 5221 U-AGA-UGCC CUGG-GCUGC A-CGCGCAAU ACAAU--a-g cacguagacg u--------- 5281 ---(-acaga ----)[---- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 -acaacacgu g-c-u----- -AAG-G-UGG ACUGUGCUC( UGCAA--G)- GGCACACG-A 5521 AAGAGG-AAU U--CCUAGUA AG-CGC-CCA (-UCACCAG- )UGG-C-G-U -UGAAUCAG- 5581 U-CCCUGUAG CU|UGUA-CA CACCGUCCGU CACUAU-C-U CA-GAU---G UU-UUUC--- 5641 ggg-augaa- -gagu----- ---------- ---------- ---------- ---------- 5701 -------(cu ag----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|gc- -ucugaauaa c--gga-a-a gUAG-AUAAG AU-GUAA-G- 5821 UCGUAACAAG GU-------- -----U-G-C GGUCGG(CGA A)CCAGC-GC A-GAUCA--- 5881 --uua----- -------~|| ||| // LOCUS Vav.oncope 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74112 LOCUS VOSSRRNA 1452 bp DNA INV 30-JUN-1994 DEFINITION V.oncoperae gene for small subunit rRNA ACCESSION X74112 KEYWORDS ribosomal RNA; small subunit ribosomal RNA. SOURCE Vavraia oncoperae ORGANISM Vavraia oncoperae Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Pansporoblastina; Pleistophoridae. REFERENCE 1 (bases 1 to 1452) AUTHORS Malone,L.A. TITLE Direct Submission JOURNAL Submitted (13-JUL-1993) to the EMBL/GenBank/DDBJ databases. L.A. Malone, Horticulture & Food Research Institute, of NZ Ltd, Mt Albert Res Centre Private Bag 92, 169 Auckland, NEW ZEALAND STANDARD full automatic REFERENCE 3 (bases 1 to 1452) AUTHORS Malone,L.A., Broadwell,A.H., McIvor,C.A., Lindridge,E.T. and Ninham,J. TITLE Ribosomal RNA genes of two of two microsporidian species, Nosema apis and Varaia oncoperae are very variable JOURNAL J. Invertebr. Pathol. 64 (1994) STANDARD full automatic COMMENT NCBI gi: 509404 FEATURES Location/Qualifiers source 1..1452 /organism="Vavraia oncoperae" /isolate="isolated from NZ porina caterpillar (Wiseana spp., Lepidoptera, Hepialidae" /dev_stage="spores" rRNA 1..1452 /product="small subunit RNA" BASE COUNT 369 a 317 c 504 g 262 t ORIGIN BASE COUNT 346 a 283 c 467 g 239 t 4568 others ORIGIN 1 |~~~~~~~~~ ~~~~~ggauc cgu(UGA)UU CU|GCCUGA- C-GU-A-GAU --GCUAGUCU 61 CAUA|-GGUU AA-GCCAUGC A-UGU---GC AA|------- |-------(- ---)[----- 121 ---------- ---------- ---gcgaag- ---------- --cgg-uggu gga]------ 181 -----|---g cg|g-CGCA- AGGCU-CAGU AACG-GGCG- ACU-GAUU-- ----UGAUCU 241 CCCG<----- ---------- ---------- ---------- ---------- ---------- 301 ->gugugg-A CAACCUCUG( -U-A-AC)CG GAGGC-caa- aacac----- ----(----) 361 ---------- -------(-- --)--|---- --<-aggagg cgcgugacac gggcacgggc 421 gugcaaccgg caggug---- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -CGGGAGAGU -AA|GGAGCC AU|--CCC-A UCA--GUUA- --GUAAGUA- 1141 GG(-GUAAGG G)CCU-ACUU A-|GACGA-A GAC|GGGU-A --CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGC(CUUA GAAGACG)GC UACC-AGGUC (CAAG-)GAC 1261 -AGCAGC-A- ---------| GGC-GC-GG- AAAUU-ACCG -AAGCC---- --cgcg---- 1321 uucg-G-GGC -|G|GUAGUA AGGA-GA--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 -----<---- ---------- ---------- ---------- ---------- ---cgugaau 1501 ---acgau-- -gug---cag -----guaaa --------au augcac---u ggu-->AACA 1561 GGAG|GU-CA A-GA-C-UGG U-G(CCA-GC -AUCC|GC-G GU-AA)UACC AG-|CUCCUG 1621 G-GGUGUC|U AUGAU--GAU UGUCG-CAG| UUA--AAGAG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --ggcugcau gaccggcgcu 2821 -gaaggcucc -cu-aucgag gggggcaggg cgccggaaaa g-cagaggau ga--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAg|cGgc ---------- 3001 --cggggGCC AG|--GUUAU UAAGCGA-CG -AGAG(GU-G AAA---)UUU A-AUGA-C-U 3061 CGCUU-AGG- A-GCAGCA-G AGGC(-GAAA )--GC|G--- CUGGCC-AG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCG ---AAUCCGA -UGA-U|AA- A-GGACGUAG 3301 GCUAGAGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CGgU -UGUAG|UUC UA--GCA-GU AAACGAUGCC GAU|GC|--- 3421 --cgug-ggg c--------- ----(----- ggugca---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- -----gccag -c-gcg---- ---------- ----agGA(- 3661 GAAA-)UU-- -gagua---- GGGC|-C|C- UGGGGAGAGU AC--AC-GC( --GCAA-)-c 3721 aga-AAUUUA -AAGG--AAA -UUG|AC-GG -AA-GAACA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUGUGCG|G CU-UAAUUUG (ACUCAA-CG )CGGG--ACA GCUUACCAGG CC[cga---- 4081 -cggucgcac ga-------g ugu(---ggu ---)-----a cacga----- ua---gg--c 4141 cg--ga---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|GA-GU- GGU-G-CAUG |GCC|GU-UA ACG|ACAAG- U|GGG(-GUG 4261 A-)CCU-UU- -GGG(UU-AA GU)CCGGGA- AG-UAGUGAG ACCCC-UG|- ---------- 4321 ------(--- --)[ccg--- ---------- ---------- ---------c gagc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- -----cgg]- --|------- ---------- GACA-GGU-G -C-U(----- 5041 ---caa--)A GCAC-A-GGA AGGA-AGGGU CAAGAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGGU CUGG-GCUGC A-CGCGCACU ACAGU--g-g ucgc-agaaa uc-------- 5281 ---(agugcc cgag)[c--- ---------- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---------- ---(-----) ---------- ---------- ------]--- ---------- 5461 ggcaauggcg a-u-c----- -GAG-A-GGG AACGAGCUC( UGGAA--G)G GGCUCGGG-A 5521 ACGAGG-AAU U--GCUAGUA AU-CGU-GGG (cucauuaa- )GACAC-G-G -UGAAUACG- 5581 U-CCCUGUUC UU|UGUA-CA CACCGCCCGU CGUUAU-C-G AA-GAU---G GA-GUCA--- 5641 ggc-gcgaa- -caa------ ---------- ---------- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- ---------- ---------- 5761 ---------- ------|ga- -ggugagugc a--ggg-u-u cUAG-AUGUG AU-ACAA-G- 5821 UCGUAACAUG GU-------- -----U-G-C UGUCGa(NNN N)NNNNNNNN NNNNNNN--- 5881 ---------- -------~|| ||| // LOCUS (2)-Myxomy 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.polyceph 5903 bp RNA RNA 11-JAN-191 DEFINITION Physarum polycephalu. ACCESSION No information KEYWORDS No information. SOURCE Physarum polycephalu. ORGANISM Physarum polycephalu. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X13160 LOCUS X13160 1964 bp UNA 15-JUN-1989 DEFINITION Physarum polycephalum rRNA small subunit (SSU rRNA) gene. ACCESSION X13160 REFERENCE 1 (bases 1 to 1964; enum. 1 to 1964) AUTHORS Johansen,T., Johansen,S. and Haugli,F.B. TITLE Nucleotide sequence of the Physarum polycephalum small subunit ribosomal RNA as inferred from the gene sequence: secondary structure and evolutionary implications JOURNAL Curr. Genet. 14, 265-273 (1988) STANDARD unannotated staff_entry BASE COUNT 484 a 462 c 560 g 458 t ORIGIN BASE COUNT 484 a 462 c 560 g 458 t 3939 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GU-G-UAU --GCUUCUCC 61 UAAA|-GACU AA-GCCAUGC A-UGUCU-CC GA|------- |--------- ----[----- 121 ---------- --------au agaagagcaa ---------- -gucu-cucu gaa]------ 181 -----|---U CU|G-CGAA- CGGCU-CCGC AUAc-cagu- ugu-aaac-- ----cauagc 241 aagc<----- ---------- -----aagcc gcguuguugc cgcaaggcga cggcgcgguu 301 c>ACAGGG-A UAACCCUGG( -U-AAUU)CU GAGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ucucgcugu -gu|gcuucu ga|--CCU-A UCA--ACUag --aUGGCA-- 1141 gc(-GUAACG G)ACA-UGCC Au|GGUAA-C AAC|GGGU-A --CAGA|GGA -U-(AAGG-) 1201 GUU-CGAUC- CUG|GAGAGU G-GGCC(U-G AGAGAU)UGC UCAC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACGU-UCCC -AUUGGG-C( ---aaa--)G 1321 CUCG-A-GGG -|C|GUUAGG GGAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------au gaaugccu-- --gcc(---- ---uuau)gg u---G-GGCA A-UUCAAAU- 1501 ------GGGA ----CUGUUU -UAAA--CAU C-----CU-A U-CGA-GUAA C---->AAUU 1561 AGAG|GA-CA A-GU-C-UGG U-G(CCA-GC -ACCC|GC-G GU-AA)UUCC AG-|CUCUAA 1621 U-AGCAUA|C GUUAA--AGU UGUUG-CGG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gcuccagacc u-ucag-agc cuugau--u- cg-ggacacu ggguca-gcu ---------- 1801 ---------- ------g-c- ucuucu-c-- -caagagcgc gccaac-uac ug-------- 1861 augauagggg a-cgucgguc aaucgugccc ugggcugucu cccccccggg ggagu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------caca gggucguuca gcg------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- -----gucuu 2161 cgcgauc--- ---------- ---------- ---gcgguuc ggcu------ ---------- 2221 ---cggcucg ggguacc--- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --aaucacca UG-AUUA--A 2461 ACCGUAGUGa cc-aa-AG-C ACGucuuua- ---------- ---------- ---------- 2521 ---------- gacg-g--gc acggca-cag cauggga|cg --aaacg-ca -ccgg---g- 2581 cucg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cc|uuuuu 2821 --u-uugcgg -gg-g----- ------cgug acu-cg-GUA A---aagcga aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGUU ---------- 3001 --CGAGGGUG AC|--CGAAU UGCUGGG-CG -AGUG(GU-G AAA---)UAC G-UUGA-C-C 3061 CUAGC-AAG- U-CGACCA-A AGGC(-GUAA )--GC|A--- GUCAUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GCA ---UUCCCGU -UGA-U|CA- A-GAGCGAAA 3301 GUUAAGGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAAUGAUGCA GAC|CA|--- 3421 --gggau-ag gac-a-g-ug uc--(----- caucuc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----gacu-c u--u-ccg-g -a-ccu---- ---------- ----ugGA(- 3661 GAAA-)UCa- -cGAGUcuau gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CACA-A-AG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cgg-aua 4081 cacg-uauga aa-----guc aag(cugaaa g-a)------ cuuua----- cuc-aaug-a 4141 uguaag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUCG- U|GGA(-UUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAGCGAG ACCCC-GG|- ---------- 4321 ------(--- --)[CGUucC UAAU-AGggg u--ggc-agc cagaccgguc ---------- 4381 ---------- ---------- -------gca a--------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---gac-agg uuagcucgcc accugaag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuaug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- UAUc-aga-g -c-c(----- 5041 --gauaa-)g guuc-u-uga aa---UGGGU UAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UC A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGUU ACAAU--G-G CAUGU----- ---------- 5281 ---(------ ----)[aaaa cgagug---- ---------- ---------- ---------- 5341 ---------- ------cuu( gaaca)aggc ---------- ---------- ---------- 5401 -guccca-cg gcc(gaaa-) ggucg----u gguaacccuu -agucc]--- ---------- 5461 --------c- ugc-u-u--- UGAC-U-GGG ACAGAUCUU( UGCAAUUA)U UGGUCUCA-A 5521 ACGAGG-AAU U--UUUAGUA AU-CGC-AGG (-UCAUUAA- )CCUGC-G-U -UGAAUGCG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUGC-U-A CC-GAU--ug gg-uuuuac- 5641 agu-uacg-- cgu-ucgga- ggac-gaug- uuuu-cgggu cu-------- ---------- 5701 -------(ua ac----)--- ---------- ---------- --------gg gcuc-cgg-- 5761 ggcguc-ggc -caaa-|guu -cuaacuacu gu-acg-g-c cuag-AGGAA GC-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-A-U CGUAGG(UGA A)CCUGCGUU UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS D.iridis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X71793 ID DIS7RNAA standard; DNA; FUN; 313 BP. XX AC X71793; XX DT 13-MAY-1993 (Rel. 35, Created) DT 13-MAY-1993 (Rel. 35, Last updated, Version 1) XX DE D.iridis (S7) gene for small subunit ribosomal RNA XX KW small subunit ribosomal RNA. XX OS Didymium iridis OC Eukaryota; Plantae; Thallobionta; Myxomycota; Myxomycetes; OC Myxogastromycetidae; Physarales; Didymiaceae. XX RN [1] RA Johansen S., Vogt V.M.; RT "An intron in the nuclear ribosomal DNA of didymium iridis codes RT for a group I ribozyme and a novel ribozyme that cooperate in self RT splicing"; RL Unpublished. XX RN [2] RP 1-313 RA Johansen S.; RT ; RL Submitted (05-MAY-1993) on tape to the EMBL Data Library by: RL S. Johansen, Institute of Medical Biology, University of Tromso, RL MH-Building, Breivika, 9037 Tromso, NORWAY XX FH Key Location/Qualifiers FH FT source 1..313 FT /organism="Didymium iridis" FT /strain="S7" FT rRNA 1..313 FT /gene="SSU rRNA" FT /product="ribosomal RNA small subunit" XX SQ Sequence 313 BP; 86 A; 68 C; 79 G; 80 T; 0 other; BASE COUNT 86 a 68 c 79 g 80 t 5590 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CACA-A-AG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU+UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aua 4081 cacg-uauga aa-----gac aag(cugaaa g-a)------ cuuuu----- cuc-aaug-a 4141 uguaag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUCG- U|GGA(-UUG 4261 A-)UUUGUC- -UGG(UC-UA UU)CCGAUA- AC-GAGCGAG ACCCC-UA|- ---------- 4321 ------(--- --)[CGUucC UAAU-AGggg c--ggc-agc ccgcuuugcc ---------- 4381 ---------- ---------- -------uuc ac-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---ggcuucg cuagc-agcc gccu-aa--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuaa-- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- UAUc-aga-g -c-c(----- 5041 --gauaa-)g guuc-u-uga aa---UGGGU UA~~~~--~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(-~~~~~ ~~~~)[~~~~ ~~~~~~~--- ---------- -----~~~~~ ~~~~~~~~~~ 5341 -~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 5401 ~~~~~~~-~~ ~~~(~~~~-) ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ (-~~~~~~~- )~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~-~~~~~~~ 5641 ~~~-~~~~~- ~~~-~~~~~- ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ---------- 5701 -------(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~-~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Paraba 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS T.foetus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M81842 Tritrichomonas foetus T.foetus rDNA unit containing complete seq of smrRNA,ITS,5.8S Small rRNA: 61 to 1631 5.8S rRNA: 1712 to 1870 Large rRNA starts from 1934. Tfrdna. Length: 2046 May 13, 1991 17:41 Check: 3787 .. BASE COUNT 409 a 331 c 430 g 401 t 4332 others ORIGIN 1 |--------- -----UACUU GGU(UGA)UC CU|GCCAAG- G-AA-G-CAC --ACUUCGGU 61 CAUA|-GAUU AA-GCCAUGC A-AGUGU-UA GU|------- |-------(- ---)[----- 121 ---------- ---------- ---------u ---------- -cagg-caac gaa]------ 181 -----|---A CU|G-CGAA- CAGCU-CAUU AACa-cgcu- cag-aauc-- ----uacuug 241 gugg<----- ---------- ---------- ---------- -----cgacc uuucaggucu 301 u>AUUUGG-A UAGCAGCAG( -U-AAUU)CU GGUGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------|--- ---------- ---------- 661 --------cg a--uuguuuc acugaguu(- ---------- ---------- ---------- 721 -----gaga- -)aac--agu g-gaaaa--g uuga----cc cuccgggc-- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------> -acaccaauc -ga|uugagc ga|--CCU-A UCA-UGCUA- --GUACUUA- 1141 GG(-GUCUUU A)CCU-AGGU A-|GGCUA-U CAC|GGGU-A A-CGGG|CGG -U-(UACC-) 1201 GUC-GGACUG CCG|GAGAAG G-CGCC(U-G AGAGAU)AGC GACU-AUAUC (CACG-)GGU 1261 -AGCAGC-A- ---------| GGC-GC-GA- AACUU-ACCC -ACUCGA-G( ---acu--)U 1321 UCGG-A-GGU -|G|GUAAUG ACCA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 ---------- --uacaugu- caacc(---- --uuuuu)gg uuguu-ugua --uagg---- 1501 --------au ----ugca-c -uuuu--cca g-----ug-c aguga-aacc ----->UAGC 1561 AGAG|GG-CC A-GU-C-UGG U-G(CCA-GC -AGCU|GC-G GU-AA)UUCC AG-|CUCUGC 1621 G-AGUUUG|C UCCCA--UAU UGUUG-CAG| UUA--AAACG CUCGUAGUCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacugccug c-aaag-gcg uacgaa--c- au-cuguucg uucacu-gug ---------- 1801 ---------- ------a-a- caaauc-a-- -ggacg---- -cuuag---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- -------|-- ---------- -------ugu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -------u-- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uu|uagga 2821 -au-gacuua -gc-gcagua ugauaucuu- uaccuuuggu a--aGAUCAA UG--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGAG|CCAC ---------- 3001 --CGGGGGUA GA|--UCUAU UUCAUGG-CG -AACG(GU-G GAA---)UGU U-UUGA-C-C 3061 CAUGA-GAG- A-GAAACG-A AGGC(-GAAA )--GC|A--- UCUACC-UA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GGG ---UUUCUGU -CGA-U|CA- A-GGGCGAGA 3301 GUAGGAGUA- UCCAACCGG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CC-G -GGUAG|UUC CU--ACC-UU AAACGAUGCC GAC|AG|--- 3421 --gggcu-ug ucc-u-u--- ----(----- uuau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------g a-gg-gca-g ga-ccuu--- ---------- ----agGA(- 3661 GAAA-)UCa- -uAGUUC-uu GGGC|-U|C- UGGGGGAACU AC--GA-CC( --GCAA-)GG 3721 CUG-AAACUU -GAAG--GAA -UUG|AC-GG -AA-GGGCA- --CAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCUUGUG|G CU-UAAUUUG (AAUCAA-CA )CGGG--GAA ACUUACCAGG AC[cag-aug 4081 uuuuuaauga cu-----gac agg(c-uucg g-g)------ ucuuu----- cag-gaua-u 4141 gacuuu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UG GUG|GUGCG- U|GGG(-UUG 4261 A-)CCUGUCa aGCG(UU-GA UU)CAGAUA- AC-GAGCGAG AUUAU-CG|- ---------- 4321 ------(--- --)[CCA--A UUAAAUACUC g--uuucug- ---------u uua------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- cagagau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------aGA- GU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUAAUUGG]- --|------- ---------- GACU-Ccc-u -g-c(----- 5041 -guaucaa)g cagg-A-GGA AGAG-GGUAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UG A|UGUC|CUU 5221 U-AGA-UGCU CUGG-GCUGC A-CGCGCGCU ACAAU--G-U UAGGA----- ---------- 5281 ---(------ ----)[ucaa -agag----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --augcu-gu ccu(gaaa-) aggcua--ca gcua--cucu cgcaau]--- ---------- 5461 -------ACC UAA-C-G--- UAGU-U-GGG AUUGAGGAU( UGUAAU-C)A UUCUCAUG-A 5521 ACCAGG-AAU C--CCUUGUA AA-UGC-GUG (-UCAACAG- )CGCGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGAcuc- 5641 ggu-gaaa-- uua-ucgga- ccu------- ---------- ---------- ---------- 5701 -------(ug cg----)--- ---------- ---------- ---------- ---------- 5761 --------ag -gaaa-|ggu -aauuaaauc ac-guu-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-A-C GGUAGG(UGA A)CCUGCCGU UGGAUCA--- 5881 --GU~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Eukary 5903 bp RNA RNA 13-JAN-1999 DEFINITION Eukaryote crown group. ACCESSION No information KEYWORDS No information. SOURCE Eukaryote crown group. ORGANISM Eukaryote crown group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (3)-Acanth 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS A.castel.1 5903 bp RNA RNA 08-APR-1987 DEFINITION Acanthameoba castellanii; ribosomal RNA small subunit. ACCESSION M13435 KEYWORDS ribosomal RNA small subunit. SOURCE Acanthameoba castellanii. ORGANISM Acanthameoba castellanii. REFERENCE 1 (bases 1 to 2303) AUTHORS Gunderson,J.H. and Sogin,M.L. TITLE Length variation in eukaryotic rRNAs: Small subunit rRNAs from JOURNAL Gene 44, 63-70 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M13435 Phylo:Eukaryotes,Protozoan Computer-readable sequence for [1] kindly provided by M.L.Sogin , 19-OCT-1986. The small subunit rRNA of A.castellani is about 30% larger than those of other eukaryotes. The extra nucleotides are located in the highly variable regions of the rRNA genes. NCBI gi: 155632 BASE COUNT 531 a 540 c 651 g 581 t 3600 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- cgCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggacccucg uggucuua-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgucaugca- --------aa 2281 uggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug-gcgucug ucccu(uuca ac)gggggca ggcgcg--ag 3541 ggcgguuuag -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCau -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CcU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---- cgc(uucg)c ggcg--acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccgug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGuU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugcc- --guugggg( -ucaa)accc aacu----gu gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg ggcuugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGGA GGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS A.castel.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07405 LOCUS ACU07405 2284 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii CDC:0180:1 18S rRNA gene. ACCESSION U07405 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2284) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2284) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507401 FEATURES Location/Qualifiers primer_bind <1..17 /citation=[1] /note="PCR amplification primer; the first 6 predicted bases were not sequenced" rRNA 18..2261 /product="18S ribosomal DNA" /citation=[1] primer_bind 2262..2284 /citation=[1] /note="PCR amplification primer" source 1..2284 /strain="CDC:0180:1" /organism="Acanthamoeba castellanii" BASE COUNT 525 a 529 c 650 g 577 t 3 others ORIGIN BASE COUNT 525 a 529 c 650 g 577 t 3622 others ORIGIN 1 |--------- ---------- -GU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu uuuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUNA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggccacaca aaug-gcc-- -acuggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgaucgugca aac------- 2281 gggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucgguug cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg cgc---gggg 3541 acgguuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugngggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggcgc-- uggucgggg( -ucaa)accc gaucc---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA NGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.castel.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07416 LOCUS ACU07416 2299 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii Neff ATCC 50373 18S rRNA gene. ACCESSION U07416 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2299) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2299) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507412 FEATURES Location/Qualifiers primer_bind <1..20 /citation=[1] /note="PCR amplification primer; the first 3 predicted bases were not sequenced" rRNA 21..2276 /product="18S ribosomal RNA" /citation=[1] primer_bind 2277..2299 /citation=[1] /note="PCR amplification primer" source 1..2299 /strain="Neff ATCC 50373" /organism="Acanthamoeba castellanii" BASE COUNT 531 a 538 c 652 g 578 t ORIGIN BASE COUNT 531 a 538 c 652 g 578 t 3604 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggacccucg uggucuua-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgucaugca- --------aa 2281 uggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug-gcgucug ucccu(uuca ac)gggggca ggcgcg--ag 3541 ggcgguuuag -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcgu--gg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugcc- --guugggg( -ucaa)accc aacu----gu gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.castel.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba castellanii CDC:0184:V014. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba castellanii CDC:0184:V014. ORGANISM Acanthamoeba castellanii CDC:0184:V014. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07401 LOCUS ACU07401 2227 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii CDC:0184:V014 18S rRNA gene. ACCESSION U07401 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2227) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2227) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507397 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2204 /product="18S ribosomal RNA" /citation=[1] /note="the predicted 66 bases at the 3' end of the 18S gene are undetermined for this isolate" source 1..2227 /strain="CDC:0184:V014" /organism="Acanthamoeba castellanii" BASE COUNT 511 a 523 c 628 g 562 t 3 others ORIGIN BASE COUNT 511 a 523 c 628 g 562 t 3679 others ORIGIN 1 |--------- -----CGACN NGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccaucggg 1861 ucaa------ ---------- -----acc-g guggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ug--cccaca aa---gc--- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gccc-aucgu cgccaug-ca aau------- 2281 -ggcggcggu g-ggucucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguu ggucu(-uca a-)aagccag cgc---gggg 3541 guggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-ugcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GA|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCNGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggugc-u ggugcgggg( -ucaa)accc gugccgu-gc aucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cugaa|guc -gauugaacc nn-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn----- -------~|| ||| // LOCUS A.castel.5 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba castellanii CDC:0786:V042. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba castellanii CDC:0786:V042. ORGANISM Acanthamoeba castellanii CDC:0786:V042. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07403 LOCUS ACU07403 2282 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii CDC:0786:V042 18S rRNA gene. ACCESSION U07403 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2282) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2282) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507399 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2259 /product="18S ribosomal RNA" /citation=[1] primer_bind 2260..2282 /citation=[1] /note="PCR amplification primer" source 1..2282 /strain="CDC:0786:V042" /organism="Acanthamoeba castellanii" BASE COUNT 524 a 541 c 652 g 564 t 1 others ORIGIN BASE COUNT 524 a 541 c 652 g 564 t 3622 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgucgug-ca aac------- 2281 -ggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug---gcguc ggucu(-uuc g-)gggccgg cgc---gggg 3541 gcggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccac- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUN-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- cgugcgggg( -ucaa)accc gcacu---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.castel.6 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba castellanii CDC:0981:V006. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba castellanii CDC:0981:V006. ORGANISM Acanthamoeba castellanii CDC:0981:V006. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07400 LOCUS ACU07400 2212 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii CDC:0981:V006 18S rRNA gene. ACCESSION U07400 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2212) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2212) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507396 FEATURES Location/Qualifiers primer_bind <1..11 /citation=[1] /note="PCR amplification primer; the first 12 predicted bases were not sequenced" rRNA 12..2189 /product="18S ribosomal RNA" /citation=[1] /note="the predicted 57 bases at the 3' end of the 18S gene are undetermined for this isolate" source 1..2212 /strain="CDC:0981:V006" /organism="Acanthamoeba castellanii" BASE COUNT 522 a 506 c 615 g 569 t ORIGIN BASE COUNT 522 a 506 c 615 g 569 t 3691 others ORIGIN 1 |--------- ---------- ---(---)-C CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuuuucu- --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gacaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gau------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------uu --agggacgc g-cauu-caa g---cguccg caucaucggg 1861 ucaa------ ---------- -----acc-g gugg--ugc- gugg-cgu-- --ugc-gggc 1921 u--------c gguccgugg- aggacca--- ---------- -----gcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g aucg-cucau cgggguggc- ------aaca 2281 cuccgguggg u-ggucucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauu- -------u-- ---------- 2581 --u------- --accauucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CC-GCGUUG -GU-u-uu-u ----gAGGA- CCA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucaggca guggggucgu gc-uucgcuu uuccg(-gca a-)cggggaa guggag--gc 3541 ggucucauuc cccugauggc ---ccgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gagguc cgcugcgugg uggucau-cg cug(gcaa)c ggcg-guggu caucacgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ucag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcggugcg- --gucaucg( -gcaa)cggu ggcgug--uc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag gucucucgug ucagcgaugg cacg-gga-- 5761 uccug--cgg -caag-|uc- -gauugaacc uu-acc-a-u uunn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn----- -------~|| ||| // LOCUS A.castel.7 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba castellanii. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba castellanii. ORGANISM Acanthamoeba castellanii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07413 LOCUS ACU07413 2290 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii Castellani ATCC 50374 18S rRNA gene. ACCESSION U07413 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2290) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2290) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507409 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2267 /product="18S ribosomal RNA" /citation=[1] primer_bind 2268..2290 /citation=[1] /note="PCR amplification primer" source 1..2290 /strain="Castellani ATCC 50374" /organism="Acanthamoeba castellanii" BASE COUNT 528 a 542 c 653 g 567 t ORIGIN BASE COUNT 528 a 542 c 653 g 567 t 3613 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aggu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -acuggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgugcggcgu caaaac--cg 2281 uggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug--gcgucg guccu(-uca c-)ggggccg gcgc--gagg 3541 gcggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuagc ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c acu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cguugggg( -ucaa)accc aacu----gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGAA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.castel.8 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07414 LOCUS ACU07414 2278 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba castellanii Ma ATCC 50370 18S rRNA gene. ACCESSION U07414 KEYWORDS . SOURCE amoeba ORGANISM Acanthamoeba castellanii Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2278) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2278) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507410 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2255 /product="18S ribosomal RNA" /citation=[1] primer_bind 2256..2278 /citation=[1] /note="PCR amplification primer" source 1..2278 /strain="Ma ATCC 50370" /organism="Acanthamoeba castellanii" BASE COUNT 529 a 533 c 644 g 572 t ORIGIN BASE COUNT 529 a 533 c 644 g 572 t 3625 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ug--cccaca aag----c-- -accggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuc-aucgu cgucagcaau ---------- 2281 -gccggcggu g-gguuccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg ugc---gggg 3541 acggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cguugggg( -ucaa)accc aacu---ggc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.griffini 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07412 LOCUS AGU07412 2812 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba griffini S-7 ATCC 30731 18S rRNA gene. ACCESSION U07412 KEYWORDS . SOURCE Acanthamoeba griffini ORGANISM Acanthamoeba griffini Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2812) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 519) AUTHORS Gast,R.J., Fuerst,P.A. and Byers,T.J. TITLE Discovery of group I introns in the nuclear small subunit ribosomal RNA genes of Acanthamoeba JOURNAL Nucleic Acids Res. (1993) In press STANDARD full automatic REFERENCE 3 (bases 1 to 2812) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507408 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA join(24..638,1157..2789) /product="18S ribosomal RNA" /citation=[1] intron 639..1156 /citation=[2] /note="group I intron" primer_bind 2788..2812 /citation=[1] /note="PCR amplification primer" source 1..2812 /strain="S-7 ATCC 30731" /organism="Acanthamoeba griffini" BASE COUNT 711 a 622 c 757 g 722 t ORIGIN BASE COUNT 552 a 518 c 634 g 589 t 3610 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucgu uuugauuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcucg ugucaucggg 1861 ucaa------ ---------- -----acc-g gugac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugucacuaaa a----gc--- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuc-aucgu cgucag--ca augac----- 2281 -ggcg-cggu g-aguuccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-ugcc-- --gcgAGGA- CCA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaugcgc-a uugcggucgu cu--uuguug ucgcu(caca a-)ggcggca ccgg--ggcg 3541 gcu---uag- cucgcauggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGUA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcauac caaugcugcc gcg(uucg)c gcgguggugu uguugugccg 4621 gcagggcccg ggcucguaug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguag-cg-- uaugugggg( -ucaa)accc augua---ug ucugcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUu-UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------u cuaa-cca-- 5761 cuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CUGCGGAG -GGAUUA--- 5881 --gga----- -------~|| ||| // LOCUS A.palest.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L09599 LOCUS ACASSR 2286 bp ds-DNA INV 28-JAN-1993 DEFINITION Acanthamoeba palestinensis small subunit ribosomal RNA gene sequence. ACCESSION L09599 KEYWORDS 16S-like rRNA; small subunit ribosomal RNA. SOURCE Acanthamoeba palestinensis (strain CCAP 1547/1) DNA. ORGANISM Acanthamoeba palestinensis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Gymnamoeba; Amoebida; Acanthopodina; Acanthamoebidae. REFERENCE 1 (bases 1 to 2286) AUTHORS Patterson,D.J., Sogin,M.L. and Medlin,L. TITLE (no title given) JOURNAL Unpublished (1993) STANDARD full automatic BASE COUNT 576 a 484 c 606 g 620 t ORIGIN BASE COUNT 576 a 484 c 606 g 620 t 3617 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuguucuu -cuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuuauu uaagcauccg ugucauuggg 1861 ucaa------ ---------- -----acu-g gugac-ugc- gugg-ug--- --ugc-gggc 1921 u--------c gguccauuag ucaucccaca agg--gug-- -auuagugug uuaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuguaucau uggccuucac ---------g 2281 ggccaguggu acaguuucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauu- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UCUU 2821 -CA-GUUGGU -UA-acuug- --uagAGGA- UCA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccauacau-a auuc------ ---aguacau ggcca(guca aa)ugguugu guauu----- 3541 ----guuug- --uguauggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaugcc g--cgcuaac ucguccauca aaac-ucau- 4381 aug--uga-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguu cgcugcauau uagugc--ug cca(gcaa)u ggug--gugu uaauaugccg 4621 gcagggcccg gguucaugug agcgguagag uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cugug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguaauaug- --cgugggg( -ucaa)accu augu----au guugcugucc uugau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-ucugg ---------- 5701 -------(gc aa----)ccg gg-uugugag gucaacggug gugugcaaac auca-ccu-- 5761 auuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS A.palest.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07411 LOCUS APU07411 2288 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba palestinensis Reich ATCC 30870 18S rRNA gene. ACCESSION U07411 KEYWORDS . SOURCE Acanthamoeba palestinensis ORGANISM Acanthamoeba palestinensis Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2288) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2288) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507407 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2265 /product="18S ribosomal RNA" /citation=[1] primer_bind 2266..2288 /citation=[1] /note="PCR amplification primer" source 1..2288 /strain="Reich ATCC 30870" /organism="Acanthamoeba palestinensis" BASE COUNT 574 a 484 c 609 g 620 t 1 others ORIGIN BASE COUNT 574 a 484 c 609 g 620 t 3616 others ORIGIN 1 |--------- -----CGACU GGU(UG-)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuguucuu -cuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuuauu uaagcauccg ugucauuggg 1861 ucaa------ ---------- -----acu-g gugac-ugc- gu-ggugu-- --ugc-gggc 1921 u--------c gguccauuag ucaucccaca agg--gug-- -auuagugug uuaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuguaucau uggccuucac ---------g 2281 ggccaguggu acaguuucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauu- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UCUU 2821 -CA-GUUGGU -UA-acuug- --uagAGGA- UCA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccauacau-a auuc------ ---aguacau ggcca(guca aa)ugguugu guauu----- 3541 ---gu-uug- --uguauggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GN-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ucguccauca aaac-ucau- 4381 aug--uga-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguu cgcugcauau uagugc--ug cca(gcaa)u ggug--gugu uaauaugccg 4621 gcagggcccg gguucaugug agcgguagag uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguaauaug- --cgugggg( -ucaa)accu augu----au guugcugucc uugau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-ucugg ---------- 5701 -------(gc aa----)ccg gg-uugugag gucaacggug augugcaaac auca-ccu-- 5761 auuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.polyph.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07407 LOCUS APU07407 2287 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba polyphaga BCM:0173:16 ATCC 50371 18S rRNA gene. ACCESSION U07407 KEYWORDS . SOURCE Acanthamoeba polyphaga ORGANISM Acanthamoeba polyphaga Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2287) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2287) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507403 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2267 /product="18S ribosomal RNA" /citation=[1] primer_bind 2268..>2287 /citation=[1] /note="PCR amplification primer" source 1..2287 /strain="BCM:0173:16 ATCC 50371" /organism="Acanthamoeba polyphaga" BASE COUNT 525 a 540 c 648 g 573 t 1 others ORIGIN BASE COUNT 525 a 540 c 648 g 573 t 3617 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu uuuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccaucggg 1861 ucaa------ ---------- -----acc-g guggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggccccauc aaacggguuu uaucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gucc-aucgu cgucgug-ca aac------- 2281 -ggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UNGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug-----gcg ucggu(-uuc g-)gccggcg c-----gggg 3541 gcggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- cgugcgggg( -ucaa)accc gcacu---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 ---------- -------~|| ||| // LOCUS A.polyph.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07415 LOCUS APU07415 2276 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba polyphaga JAC/S2 ATCC 50372 18S rRNA gene. ACCESSION U07415 KEYWORDS . SOURCE Acanthamoeba polyphaga ORGANISM Acanthamoeba polyphaga Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2276) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2276) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507411 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2253 /product="18S ribosomal RNA" /citation=[1] primer_bind 2254..2276 /citation=[1] /note="PCR amplification primer" source 1..2276 /strain="JAC/S2 ATCC 50372" /organism="Acanthamoeba polyphaga" BASE COUNT 529 a 532 c 643 g 572 t ORIGIN BASE COUNT 529 a 532 c 643 g 572 t 3627 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ug--cccaca aag----c-- -acuggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuc-aucgu cgucagcaau ---------- 2281 -gccggcggu g-gguuccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg ugc---gggg 3541 acggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cgucgggg( -ucaa)accc aacug---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.polyph.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07402 LOCUS APU07402 2273 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba polyphaga CDC:0884:V029 18S rRNA gene. ACCESSION U07402 KEYWORDS . SOURCE Acanthamoeba polyphaga ORGANISM Acanthamoeba polyphaga Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2273) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2273) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507398 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2250 /product="18S ribosomal RNA" /citation=[1] primer_bind 2251..2273 /citation=[1] /note="PCR amplification primer" source 1..2273 /strain="CDC:0884:V029" /organism="Acanthamoeba polyphaga" BASE COUNT 527 a 529 c 644 g 573 t ORIGIN BASE COUNT 527 a 529 c 644 g 573 t 3630 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCGUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ug--ccacaa agc------- -accggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-a gcuc-aucgu cgucag--ca au-------- 2281 -gccggcggu g-gguuccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg ugc---gggg 3541 acggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cguugggg( -ucaa)accc aacu----gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACUGCcCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS A.rhysodes 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07406 LOCUS ARU07406 2280 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba rhysodes BCM:0685:116 ATCC 50368 18S rRNA gene. ACCESSION U07406 KEYWORDS . SOURCE Acanthamoeba rhysodes ORGANISM Acanthamoeba rhysodes Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2280) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2280) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507402 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2261 /product="18S ribosomal RNA" /citation=[1] primer_bind 2262..>2280 /citation=[1] /note="PCR amplification primer" source 1..2280 /strain="BCM:0685:116 ATCC 50368" /organism="Acanthamoeba rhysodes" BASE COUNT 523 a 539 c 650 g 568 t ORIGIN BASE COUNT 523 a 539 c 650 g 568 t 3623 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccaucggg 1861 ucaa------ ---------- -----acc-g guggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gucc-aucgu cgucggguca aac------- 2281 gcgcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug---gcguc ggucu(-uuc g-)gggccgg cgc---gggg 3541 gcgguuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggcgc-- -ugucgggg( -ucaa)accc gacc----gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC---- 5881 ---------- -------~|| ||| // LOCUS A.royreba 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07417 LOCUS ARU07417 2278 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba royreba Oak Ridge ATCC 30884 18S rRNA gene. ACCESSION U07417 KEYWORDS . SOURCE Acanthamoeba royreba ORGANISM Acanthamoeba royreba Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2278) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2278) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507413 FEATURES Location/Qualifiers primer_bind <1..12 /citation=[1] /note="PCR amplification primer; the first 11 predicted bases were not sequenced" rRNA 13..2255 /product="18S ribosomal RNA" /citation=[1] primer_bind 2256..2278 /citation=[1] /note="PCR amplification primer" source 1..2278 /strain="Oak Ridge ATCC 30884" /organism="Acanthamoeba royreba" BASE COUNT 530 a 531 c 640 g 576 t 1 others ORIGIN BASE COUNT 530 a 531 c 640 g 576 t 3626 others ORIGIN 1 |--------- ---------- ---(---)-C CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugc-cccaca aag--guu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gucc-aucgu cgacguuuca a-------cg 2281 cgucggcggu g-gaucucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauu- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggc-g cggucguccu ug---gcguu cgugu(-uca c-)gcacgag cgc---gagg 3541 gcgguuuag- -cccgauggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu cauuccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UN A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggcgcc- -cgucgggg( -ucaa)accc gauggu-cgc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS Aca.sp.688 5903 bp RNA RNA 11-JAN-191 DEFINITION Acanthamoeba sp. CDC:0688:V125. ACCESSION No information KEYWORDS No information. SOURCE Acanthamoeba sp. CDC:0688:V125. ORGANISM Acanthamoeba sp. CDC:0688:V125. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07404 LOCUS ASU07404 2290 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba sp. CDC:0688:V125 18S rRNA gene. ACCESSION U07404 KEYWORDS . SOURCE Acanthamoeba sp. ORGANISM Acanthamoeba sp. Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2290) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2290) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507400 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2267 /product="18S ribosomal RNA" /citation=[1] primer_bind 2268..2290 /citation=[1] /note="PCR amplification primer" source 1..2290 /strain="CDC:0688:V125" /organism="Acanthamoeba sp." BASE COUNT 527 a 532 c 650 g 578 t 3 others ORIGIN BASE COUNT 527 a 532 c 650 g 578 t 3616 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCACU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-NCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu uuuuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucguuggg 1861 ucaa------ ---------- -----acc-a gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg uggccacaca aaug-gcc-- -acuggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgaucgugca aac------- 2281 gggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucgguug cggucguccu ug---gcguc ucggu(-uuc g-)gccgggg cgc---gggg 3541 acgguuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugngggg uggugu---c gcu(ucgc)g gcg---augu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cguggcgc-- uggucgggg( -ucaa)accc gaucc---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)-CUGCGGA NGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS Aca.sp.288 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07409 LOCUS ASU07409 2298 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba sp. BCM:0288:27 ATCC 50369 18S rRNA gene. ACCESSION U07409 KEYWORDS . SOURCE Acanthamoeba sp. ORGANISM Acanthamoeba sp. Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2298) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2298) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507405 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2275 /product="18S ribosomal RNA" /citation=[1] primer_bind 2276..2298 /citation=[1] /note="PCR amplification primer" source 1..2298 /strain="BCM:0288:27 ATCC 50369" /organism="Acanthamoeba sp." BASE COUNT 534 a 537 c 651 g 576 t ORIGIN BASE COUNT 534 a 537 c 651 g 576 t 3605 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugucgucggg 1861 ucaa------ ---------- -----acc-g gcgac-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccu-acaa a----gc--- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gccc-aucgu cgucaug-ca aau------- 2281 -ggcggcggu g-ggucucug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug-gcgcguu ggucu(-uca a-)aagccag cgcgc-gggg 3541 gcggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--ugg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgugguggcu ggugcgggg( -ucaa)accc gugccaugcc aucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS Aca.sp1282 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07408 LOCUS ASU07408 2293 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba sp. BCM:1282:324 18S rRNA gene. ACCESSION U07408 KEYWORDS . SOURCE Acanthamoeba sp. ORGANISM Acanthamoeba sp. Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2293) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2293) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507404 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2270 /product="18S ribosomal RNA" /citation=[1] primer_bind 2271..2293 /citation=[1] /note="PCR amplification primer" source 1..2293 /strain="BCM:1282:324" /organism="Acanthamoeba sp." BASE COUNT 527 a 541 c 654 g 571 t ORIGIN BASE COUNT 527 a 541 c 654 g 571 t 3610 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acg--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccaucggg 1861 ucaa------ ---------- -----acc-g guggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gucc-aucgu cgugcggcgu caaaac---c 2281 gugcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu uggcgucucg guccu(-uca c-)ggggccg gggcgcgggg 3541 guggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccau- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- -cguugggg( -ucaa)accc aacu----gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS Aca.288.37 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07410 LOCUS ASU07410 2282 bp DNA INV 02-JUL-1994 DEFINITION Acanthamoeba sp. BCM:0288:37 18S rRNA gene. ACCESSION U07410 KEYWORDS . SOURCE Acanthamoeba sp. ORGANISM Acanthamoeba sp. Eucaryotae; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Amoebida; Acanthamoeba. REFERENCE 1 (bases 1 to 2282) AUTHORS Gast,R.J., Ledee,D.R., Fuerst,P.A. and Byers,T.J. TITLE Population Structure of Acanthamoeba: Nuclear srRNA Gene Phylogenetic Analysis of 18 Group II and III Isolates JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2282) AUTHORS Gast,R.J. TITLE Direct Submission JOURNAL Submitted (05-MAR-1994) Rebecca J. Gast, The Ohio State University, Molecular Genetics, 484 West 12th Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 507406 FEATURES Location/Qualifiers primer_bind 1..23 /citation=[1] /note="PCR amplification primer" rRNA 24..2259 /product="18S ribosomal RNA" /citation=[1] primer_bind 2260..2282 /citation=[1] /note="PCR amplification primer" source 1..2282 /strain="BCM:0288:37" /organism="Acanthamoeba sp." BASE COUNT 523 a 541 c 651 g 565 t 2 others ORIGIN BASE COUNT 523 a 541 c 651 g 565 t 3623 others ORIGIN 1 |--------- -----CGACN GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuguuu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- -----ucuc- --------u- --uuugucuu --uuuuuacc 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- CGCUC(---- --gauaa)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauc------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- --agggacgc g-cauuucaa g---cgcccg ugccgucggg 1861 ucaa------ ---------- -----acc-g gcggc-ugc- guuggcgu-- --ugc-gggc 1921 u--------c gguccgucgg ugccccacaa agg--gcu-- -aucggcgug ucaaccggcc 1981 cgcccg---- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uccccucc 2161 uucuggauu- ---------- ---------- -cccguuccu gcua------ ---------- 2221 ---uugaguu aguggggacg ucacaggg-g gcuc-aucgu cgucgugcaa ac-------- 2281 -ggcggcggu g-ggucccug gggcccagau c--------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -GUUUACCGU 2521 G-AAAA--AA UUAG-A-GUG UUCAA-AG-C AGGCagauc- -------c-- ---------- 2581 --a------- ---auuuucu gccacc-GAA UACAU-UAGC AUGGGA|UA- AUGGAA-UAG 2641 GA---cccug uc-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- --------cu ccua|-UUUU 2821 -CA-GUUGGU -UU-uggcag c-gcgAGGA- CUA--GGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ua gga-g-a--- ----(----- ---------) -cguugaaua caaaacacca 3481 ccaucggu-g cggucguccu ug---gcguc ggucu(-uuc g-)gggccgg cgc---gggg 3541 acggcuuag- -cccgguggc --accgguga augac----- ---------- ---------- 3601 ---------- ---------u c-cc-cua-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAugcc g--cgcuaac ccguccauca aaac-ccac- 4381 gcg--cgg-c uc--ac---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----gcgguc cgcugcgggg uggugu---c gcu(ucgc)g gcg---acgu caucccgccg 4621 gcagggcccg gguccgugug ggcgguaggg uucggcgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccguG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g cg-c(----- 5041 --gccua-)g ccag-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UN A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ccaa cgagucc--- ---------- --g----cuu caaucga-gg 5341 cgcgaugc-- cgugcgggg( -ucaa)accc gcacu---gc gucgcugucc ucgau----- 5401 cgcgccu-gg gcc(gaua-) ggucc----g gguaau-cuu ugcaaa]--- ---------- 5461 -------uuu aau-c-g--- uGCU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGCGU-U -GAUUACG-- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucc-ucgga- gccg-uggc- cucu-a---c gcaa-uccgg ---------- 5701 -------(gc aa----)ccg gg-uugugag guc------- ---------- --uc-ccc-- 5761 uuuugg-cgg -cgaa-|guc -gauugaacc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CUGCGGAU -GGAUCA--- 5881 --gga----- -------~|| ||| // LOCUS (3)-Alveol 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (4)-Apicom 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (5)-Coccid 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS E.tenella 5903 bp RNA RNA 11-JAN-191 DEFINITION Eimeria tenella. ACCESSION No information KEYWORDS No information. SOURCE Eimeria tenella. ORGANISM Eimeria tenella. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U40264 LOCUS ETU40264 1756 bp DNA INV 02-FEB-1996 DEFINITION Eimeria tenella small subunit ribosomal RNA gene, complete sequence. ACCESSION U40264 NID g1173858 KEYWORDS . SOURCE Eimeria tenella. ORGANISM Eimeria tenella Eukaryotae; mitochondrial eukaryotes; Alveolata; Apicomplexa; Coccidia; Eimeriida; Eimeriidae; Eimeria. REFERENCE 1 (bases 1 to 1756) AUTHORS Relman,D.A., Schmidt,T.M., Gajadhar,A, Sogin,M, Cross,J, Yoder,K, Sethabutr,O and Echeverria,P. TITLE Direct Submission JOURNAL Submitted (07-NOV-1995) David A. Relman, Med, Micro & Immuno, Stanford University, 3801 Miranda Ave 154-T, Palo Alto, CA 94304, USA COMMENT NCBI gi: 1173858 FEATURES Location/Qualifiers source 1..1756 /organism="Eimeria tenella" rRNA 1..1756 /product="small subunit ribosomal RNA" BASE COUNT 449 a 345 c 471 g 491 t ORIGIN BASE COUNT 449 a 345 c 471 g 491 t 4147 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~U- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- --ucucauuu 301 u>ACAUGG-A UAACCAUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUGAA-A( ---acag-)c 1321 uucG-A-GGU -|A|GUGACG AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCAU(---- ---uuu-)AU GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUG -UAAA--ACC C-----UU-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAG--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugu c-gugg-uca uccggcgu-c gc-ccguaug ggugug---- ----ugccug 1801 gcaug---cc cucggcuuau uuccgguag- ------ccuu c--cgc-g-c uu-------- 1861 ---aauugc- --gugug-uu gguguucugg aac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AAUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------GUC GCCC-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGACcUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CCA-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGACA 3301 GUAGGGGGU- UUGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU CU--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gga-a-acgc c---(----u accuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-cuccugca -c-cuc---- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UCU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AG-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)UCGAUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-gg u--caguaac (uuugc---- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gguuacug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[gcaa cgaguuu--- ---------- -----u---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -u-accu-ug gcc(gaca-) ggucu----g gguaau-cuu uugagu]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUAAG- 5581 U-CCCUGCCU CU|UGUA-CA CACCGCCCGU CGCUGC-A-A CC-GAU--CG GA-GGGUCC- 5641 UGU-gaau-- uca-ucgga- cgga--caa- gccu-uac-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --gu-ggg-- 5761 g-cugg-ucg -ggaa-|guu -gcguaaaua ga-GCC-C-U CUAA-AGGAU GC-AAAA-G- 5821 UCGUAACACA GU-------- -----U-U~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS N.caninu.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03069 LOCUS U03069 1789 bp DNA INV 04-NOV-1993 DEFINITION Neospora caninum 18S rRNA gene. ACCESSION U03069 KEYWORDS . SOURCE Neospora caninum ORGANISM Neospora caninum Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Eimeriina; Sarcocystidae; Neospora. REFERENCE 1 (bases 1 to 1789) AUTHORS Holmdahl,J.O., Mattsson,J.G., Uggla,A. and Johansson,K. TITLE The phylogeny of Neospora caninum and Toxoplasma gondii based on ribosomal RNA sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1789) AUTHORS Holmdahl,J.O. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Joakim O.M. Holmdahl, Department of Veterinary Microbiology, Section of Parasitology, Uppsala S-750 07, Sweden STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1789 /product="18S rRNA" source 1..1789 /organism="Neospora caninum" /dev_stage="tachyzoite" /isolate="NC-1" BASE COUNT 468 a 357 c 458 g 504 t 2 others ORIGIN BASE COUNT 468 a 357 c 458 g 504 t 4116 others ORIGIN 1 |~~~~~~~~~ ~~~~~-ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uu-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------GUC GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUWCG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUCC- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS N.caninu.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24380 LOCUS N.caninum.2 1736 bp ds-DNA INV 03-JAN-1994 DEFINITION Neospora caninum 18S ribosomal RNA (18S rRNA) gene. ACCESSION L24380 KEYWORDS 18S ribosomal RNA. SOURCE Neospora caninum (strain NC-1) tachyzoite DNA. ORGANISM Neospora caninum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida. REFERENCE 1 (bases 1 to 1736) AUTHORS Ellis,J.T., Luton,K., Baverstock,P.R., Brindley,P. and Johnson,A.M. TITLE Phylogeny of Neospora caninum and Toxoplasma gondii JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1736 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1736 /organism="Neospora caninum" /strain="NC-1" /dev_stage="tachyzoite" /sequenced_mol="DNA" BASE COUNT 454 a 345 c 442 g 495 t ORIGIN BASE COUNT 454 a 345 c 442 g 495 t 4167 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nUUA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUUU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAC U---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uu-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------GUC GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --GGA|CGGU ---------- 3001 --UGGGGCCA GU|-UCGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUCC- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn... 5881 ..nnn~~~~~ ~~~~~~~~|| ||| // LOCUS N.caninu.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U16159 LOCUS NCU16159 2271 bp DNA INV 01-NOV-1994 DEFINITION Neospora caninum N.C.-Liverpool 18S rRNA gene, complete sequence, internal transcribed spacer 1, and 5.8S rRNA gene, partial sequence. ACCESSION U16159 KEYWORDS . SOURCE Neospora caninum. ORGANISM Neospora caninum Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexans; Coccidia; Eimeriida; Sarcocystidae; Neospora. REFERENCE 1 (bases 1 to 2271) AUTHORS Barber,J.S., Holmdahl,J.O.M., Owen,M.R., Guy,F.M. and Trees,A.J. TITLE Characterisation of a canine European isolate of Neospora caninum JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2271) AUTHORS Holmdahl,J.O.M. TITLE Direct Submission JOURNAL Submitted (20-OCT-1994) Joakim O. M. Holmdahl, Parasitology, Swedish University of Agricultural Sciences, Uppsala, S-750 07, Sweden STANDARD full automatic COMMENT NCBI gi: 562132 FEATURES Location/Qualifiers source 1..2271 /strain="N.C.-Liverpool" /organism="Neospora caninum" /specific_host="Canis familiaris" /dev_stage="tachyzoite" rRNA 1..1793 /product="18S ribosomal RNA" misc_RNA 1794..2213 /standard_name="ITS1" /product="internal transcribed spacer 1" rRNA 2214..>2271 /product="5.8S ribosomal RNA" BASE COUNT 592 a 459 c 551 g 658 t 11 others ORIGIN BASE COUNT 468 a 358 c 460 g 507 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~~-ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac uuggugaauu 1801 cu-------- -----ag--c a------ucc uucu------ ---------- ---------- 1861 -ggau-uu-- --cuucacac uucauugugu ggaguuuuuu ccaggac--- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --uuuuacuu ug-agaa--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------GUC GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUag-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUCC- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUC----- -------~|| ||| // LOCUS S.arietica 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis arieticanis. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis arieticanis. ORGANISM Sarcocystis arieticanis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24382 ID SARG18SY standard; DNA; INV; 1821 BP. XX AC L24382; XX DT 29-JAN-1994 (Rel. 38, Created) DT 29-JAN-1994 (Rel. 38, Last updated, Version 1) XX DE Sarcocystis arieticanis 18S ribosomal RNA (18S rRNA) gene. XX KW 18S ribosomal RNA. XX OS Sarcocystis arieticanis OC Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsiea; Coccidia; OC Eucoccidiidae; Eimeriina; Sarcocystidae. XX RN [1] RP 1-1821 RA Ellis J.T., Luton K., Baverstock P.B., Tenter A.M., Johnson A.M.; RT "Phylogenetic relationships of Sarcocystis species determined from RT PCR derived complete ribosomal RNA gene sequences"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA 1..1821 FT /product="18S ribosomal RNA" FT /gene="18S rRNA" FT source 1..1821 FT /organism="Sarcocystis arieticanis" FT /dev_stage="tachyzoite" FT /sequenced_mol="DNA" XX SQ Sequence 1821 BP; 494 A; 347 C; 460 G; 518 T; 2 other; BASE COUNT 494 a 347 c 460 g 518 t 4084 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~UUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuucuuu ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- --------uc auaucgagau gagaaucuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCUGA UCA--GCUUU C-GACGGUA- 1141 GU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuu-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaugucugcu g--------- ---------g aa-------- ---------- ---------- 1801 ---------- -----gc-a- a--------- -----ucggu c----c-gcc cu-------- 1861 auuuguaggg u-gugcacuu gaugaau--- ------ucug gcaucucuau ccuga----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uaau ggugugcgcg uggggaauuc uccucuuccc gcgggcgauc aguuuucggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- uac------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-GA-AG-C AGGCuaauu- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUG-CAG CAUGGAA|UA -ACAAUA-UA -GGAUuUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggc -uu-ucuag- --------ga CUG-AA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-augu ca--(----u uuugc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA CUUG|AC-GG -AA-GGGCA- -CCAC-CA-c ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --n-Gn|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG---AA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGg-- a--uc----- -aggaaca-- -cuu-uauug 4381 ugu--u---- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --ucugu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----auca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa caaguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- -------uug 5401 aaaaccu-ug gcc(gaua-) gguuu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-cccgu cuac-gcg-- ---------- ---------- 5701 -------(cc guuu--)--- ---------- ---------- --------ca ggcg-ugu-- 5761 g-cggg-aug -gaaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA G--AGAA-G~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.fusiform 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis fusiformis. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis fusiformis. ORGANISM Sarcocystis fusiformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03071 LOCUS SFU03071 1878 bp DNA INV 04-NOV-1993 DEFINITION Sarcocystis fusiformis 18S rRNA. ACCESSION U03071 KEYWORDS . SOURCE Sarcocystis fusiformis ORGANISM Sarcocystis fusiformis Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Eimeriina; Sarcocystidae; Sarcocystis. REFERENCE 1 (bases 1 to 1878) AUTHORS Holmdahl,J.O., Mattsson,J.G., Uggla,A. and Johansson,K. TITLE The phylogeny of Neospora caninum and Toxoplasma gondii based on 18S rRNA sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1878) AUTHORS Holmdahl,J.O. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Joakim O.M. Holmdahl, Department of Veterinary Microbiology, Section of Parasitology, Uppsala S-750 07, Sweden STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1811 /product="18S rRNA" source 1..1878 /organism="Sarcocystis fusiformis" /specific_host="Felis catus" /dev_stage="cystozoite" BASE COUNT 537 a 337 c 459 g 545 t ORIGIN BASE COUNT 537 a 337 c 459 g 545 t 4025 others ORIGIN 1 |~~~~~~~~~ ~~~~~~ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuuau ------u--- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- --------uc aauauaauac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 GU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAu(---- ---ucu-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc-ugc u-ggaa-gca aucagu--cc gc-ccuuuua -gugag-ggu ---------- 1801 ---------- -----gu-g- uacuug-aug -aauucuggc augauu-auc uu-------- 1861 cccacuaaua a-uauuauua uauuaggaua auuccuaaua ugguaauaau aauuu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uggu aagacaaaca gu-------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AGUUACUU UG-AGAA--A 2461 AUUACAGUGU UU-GA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guu GCCU-U--GA AUACUG-CAG CAUGGAA|UA -ACAAUA-UA -GGAUuUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-cuag-- --------ga CUG-AA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-augu ca--(----- cugu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caagaac -------ac( uuuu-auuau 4381 )gu------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guuuuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-c -g-u(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa caaguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- -------uuu 5401 aagaccu-ug gcc(gaua-) gguuu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- cugu-uccg- uguc-acguu gu-gu----- ---------- 5701 -------(ac ac--a-)--- ---------- ---------- -------gca augg-ugu-- 5761 g-cgga-aug -gaaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.gigantea 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis gigantea. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis gigantea. ORGANISM Sarcocystis gigantea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24384 LOCUS S.gigantea 1830 bp ds-DNA INV 03-JAN-1994 DEFINITION Sarcocystis gigantea 18S ribosomal RNA (18S rRNA) gene. ACCESSION L24384 KEYWORDS 18S ribosomal RNA. SOURCE Sarcocystis gigantea tachyzoite DNA. ORGANISM Sarcocystis gigantea Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (bases 1 to 1830) AUTHORS Ellis,J.T., Luton,K., Baverstock,P.B., Tenter,A.M. and Johnson,A.M. TITLE Phylogenetic relationships pf Sarcocystis species determined from PCR derived complete ribosomal RNA gene sequences JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1830 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1830 /organism="Sarcocystis gigantea" /dev_stage="tachyzoite" /sequenced_mol="DNA" BASE COUNT 507 a 323 c 449 g 550 t 1 others ORIGIN BASE COUNT 507 a 323 c 449 g 550 t 4074 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~-U --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u cgauuuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 GU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---ugu-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauaucugcu g-gaagcaau caguccgccc uuuucguaag ggugug-cac uugaugaauu 1801 cu-gg---ca ug-auuu-ca uccuaauaau aauauauuau uauauuaggu uguucuagua 1861 uaauaauauu u-auuauuau gggaugac-- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AGUUAC-U UG-AGAA--- 2461 --UAGAGUG- UU-GA-AG-C AGGCuuuguu ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AU-CUG-CAG CAUGGAA|UA -ACAAUA-UA -GGAUuUCGG 2581 uucua----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uu|--auu 2821 -uu-guuggu -uu-uuucug ua------ga CUG-AA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-augu ca--(----c auugu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGU ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGg-- a--uc----- -aggaa---- -cac-aauuu 4381 uuu--guguu u---uu---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gu------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----auca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGnA---GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A U-CAU----- ---------- 5281 ---------- -----[ccaa caaguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ----uauuau 5401 aagaccu-ug gcc(gaua-) gguuu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- cugu-uccg- uguc-gcg-- ---------- ---------- 5701 ---guuc(cu uuuu--)ggg c--------- ---------- ---------- --cg-ugu-- 5761 a-cgga-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA G--AGAA~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.muris 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis muris. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis muris. ORGANISM Sarcocystis muris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M64244 M34846 LOCUS SARRR16S 1809 bp ds-DNA INV 18-APR-1991 DEFINITION Sarcocystis muris 16S-like ribosomal RNA (16S rRNA) gene sequence. ACCESSION M64244 M34846 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Sarcocystis muris DNA. ORGANISM Sarcocystis muris Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Coccidia; Eucoccidiidae; Eimeriina; Sarcocystidae. REFERENCE 1 (bases 1 to 1809) AUTHORS Gajadhar,A.A., Marquardt,W.C., Hall,R., Gunderson,J., Ariztia-Carmona,E.V. and Sogin,M.L. TITLE Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates JOURNAL Mol. Biochem. Parasitol. 45, 147-154 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1809 /product="16S-like ribosomal RNA" /gene="16S rRNA" BASE COUNT 480 a 362 c 469 g 497 t 1 others ORIGIN BASE COUNT 480 a 362 c 469 g 497 t 4095 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucauuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uca-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCyAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauaucugcc g-gaag-cag ccaguc--c- gc-ccuuccg gggugu-gca ---------- 1801 ---------- ------c-u- ugguga-a-- -uucuggcau ccuccu-gau ug-------- 1861 gugccgucac a-cuucauug ugaugauggc agcuaucagg gc-------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuuau-- ---------- ---------- ---------- 2521 ---------u GCUU-U--GA AUACUG-CAG CAUGGAA|UA -ACAAGA-UA -GGAUuUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-cuag-- --------ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-aagu ca--(----- uccu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caggaac ---------c ucgc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------a 5401 ugaaccu-ug gcc(gaca-) ggucu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-uccg- uguc-gcg-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --cg-ugu-- 5761 g-cgga-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS S.neurona 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis neurona SN5. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis neurona SN5. ORGANISM Sarcocystis neurona SN5. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07812 LOCUS SNU07812 1803 bp DNA INV 06-JUN-1994 DEFINITION Sarcocystis neurona SN5 small ribosomal subunit gene, complete sequence. ACCESSION U07812 KEYWORDS . SOURCE Sarcocystis neurona ORGANISM Sarcocystis neurona Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Eimeriina; Sarcocystidae; Sarcocystis. REFERENCE 1 (sites) AUTHORS Fenger,C.K., Granstrom,D.E., Langemeier,J.L., Gajadhar,A.A., Cothran,G., Tramontin,R.R., Dubey,J.P. and Stamper,S. TITLE Phylogenetic relationship of Sarcocystis neurona to other members of the family Sarcocystidae based on the sequence of the small ribosomal subunit gene JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1803) AUTHORS Fenger,C.K. TITLE Direct Submission JOURNAL Submitted (17-MAR-1994) Clara K. Fenger, University of Kentucky, Veterinary Science, 108 Gluck Equine Research Center, Lexington, KY 40546, USA STANDARD full automatic COMMENT NCBI gi: 497212 FEATURES Location/Qualifiers source 1..1803 /lab_host="Bos taurus monocytes" /strain="SN5" /organism="Sarcocystis neurona" /macronuclear /dev_stage="cultured tachyzoites" rRNA 1..1803 /product="small ribosomal subunit" BASE COUNT 474 a 360 c 464 g 505 t ORIGIN BASE COUNT 474 a 360 c 464 g 505 t 4100 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-cAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uau-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauaucugcu g------gaa gcagcc---- ag-uccg-cc -----c-uuu ---------- 1801 ---------- ---------- -guggg-ug- -ugca-cuu- -ggu---gaa u--------- 1861 ---------- ---------- ---------- ------ucug gcauccuccu gauug----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------gugu uaucaucacu ucauuguguu gauggcagcu gucaggac-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuuguu- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUG-CAG CAUGGAA|UA -ACAAGA-UA -GGAUuUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-cuag-- --------ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-acgu ca--(----- uccu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu ---------c aagaa----- -cuu-ugugu 4381 ucu--u---- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gu------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----auca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 acaaccc-ug gcc(gaca-) ggucu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- cugu-uccg- uguc-gcg-- ---------- ---------- 5701 -------(ua cc----)--- ---------- ---------- ---------- --cg-cgu-- 5761 c-cgga-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.tenella 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcocystis tenella. ACCESSION No information KEYWORDS No information. SOURCE Sarcocystis tenella. ORGANISM Sarcocystis tenella. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24383 LOCUS S.tenella 1782 bp ds-DNA INV 03-JAN-1994 DEFINITION Sarcocystis tenella 18S ribosomal RNA (18S rRNA) gene. ACCESSION L24383 KEYWORDS 18S ribosomal RNA. SOURCE Sarcocystis tenella tachyzoite DNA. ORGANISM Sarcocystis tenella Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (bases 1 to 1782) AUTHORS Ellis,J.T., Luton,K., Baverstock,P.B., Tenter,A.M. and Johnson,A.M. TITLE Phylogenetic relationships of Sarcocystis species determined from PCR derived complete ribosomal RNA gene sequences JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1782 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1782 /organism="Sarcocystis tenella" /dev_stage="tachyzoite" /sequenced_mol="DNA" BASE COUNT 491 a 328 c 454 g 504 t 5 others ORIGIN BASE COUNT 491 a 328 c 454 g 504 t 4126 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~U --GCUUGUCU 61 UAAA|-GAUU Aa-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuuu- ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------u caucugagau gaaagucuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 GU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuu-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaugucugcu g------gaa gcaauc---- ag-uc----- ---------- ---------- 1801 ---------- -----gc--- ccua------ -uuuguag-- -ggugu-gca cu-------- 1861 ugaugaa--- ---------- ---------- ------ucug gcauuuuguc caaug----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------agnc ngacucgggc aagcnucugu ucgauaugga uac------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --ugu--CUU UG-AGAA--- 2461 AUUAGAGUGU UU-GA-CG-- AGGCuaau-- ---------- ---------- ---------- 2521 ---------- GCCU-U--ga -ucucg--AG CAUGGAA|UA -ACAAUA-UA -GGA-uUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-cua--- --------gg CUG-AA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --GGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-augu ca--(----u uuugc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGg-- a--------- ---------- ucag-aaaca 4381 cuu--uauug u---guuuuu ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gu------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----auca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa caaguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- --------uu 5401 gaaaccu-ug gcc(gaua-) gguuu----a gguaaucuuu -ugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU---GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 AC-AGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-Gcg -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCnGU nGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-cccg- uuaacgcgcg ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- cgcg-ugu-- 5761 g-cgga-aug -gaaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X68523 ID TG17S standard; DNA; INV; 1816 BP. XX AC X68523; XX DT 23-OCT-1992 (Rel. 33, Created) DT 23-OCT-1992 (Rel. 33, Last updated, Version 1) XX DE T.gondii gene for 17S rRNA XX KW 17S ribosomal RNA; ribosomal RNA. XX OS Toxoplasma gondii OC Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Coccidia; OC Eucoccidiidae; Eimeriina; Sarcocystidae. XX RN [1] RP 1-1816 RA Ding Y.; RT ; RL Submitted (30-SEP-1992) on tape to the EMBL Data Library by: RL Y. Ding, State Univ of New York at Stony Brook, Dept of Infectious RL Disease, NY 11794, USA XX RN [2] RP 1-1816 RA Long M., Ding Y., Polin D., Luft B.J.; RT "Structural characteristics of the Toxoplasma ribosome"; RL Unpublished. XX CC *source: strain=RH; XX FH Key Location/Qualifiers FH FT rRNA <1..>1816 FT /product="17S ribosomal RNA" /partial XX SQ Sequence 1816 BP; 475 A; 368 C; 466 G; 507 T; 0 other; BASE COUNT 474 a 365 c 461 g 504 t 4099 others ORIGIN 1 |ccgaauucg ucgacAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa---g gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAA- )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC|cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAA--UG AG-UGUucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS T.gondii.2 5903 bp RNA RNA 11-JAN-1988 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M17555 LOCUS M17555 92 bp - UNA 15-MAR-1988 DEFINITION Figure 1. Sequence blocks of T. gondii srRNA (T.g.) aligned against those of Tetrahymena thermophila srRNA (T.t.) and P. berghei srRNA (P.b). ACCESSION M17555 REFERENCE 1 (bases 1 to 92) AUTHORS Johnson,A.M., Murray,P.J., Illana,S. and Baverstock,P.J. TITLE Rapid nucleotide sequence analysis of the small subunit ribosomal RNA of Toxoplasma gondii: evolutionary implications for the Apicomplexa JOURNAL Mol Biochem Parasitol 25, 239-246 (1987) STANDARD unannotated staff_entry BASE COUNT 30 a 21 c 18 g 23 t LOCUS M17556 277 bp - UNA 15-MAR-1988 DEFINITION Figure 1. Sequence blocks of T. gondii srRNA (T.g.) aligned against those of Tetrahymena thermophila srRNA (T.t.) and P. berghei srRNA (P.b). ACCESSION M17556 REFERENCE 1 (bases 1 to 277) AUTHORS Johnson,A.M., Murray,P.J., Illana,S. and Baverstock,P.J. TITLE Rapid nucleotide sequence analysis of the small subunit ribosomal RNA of Toxoplasma gondii: evolutionary implications for the Apicomplexa JOURNAL Mol Biochem Parasitol 25, 239-246 (1987) STANDARD unannotated staff_entry BASE COUNT 84 a 48 c 64 g 81 t BASE COUNT 114 a 69 c 82 g 104 t 5534 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~AUU-ACCC -AAUCCU-G( ---aac--)C 1321 AGGG-A-GG- -|A|GUGAC- -GAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- --AAA(---- ---uuuc)UU U--CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CACC--CCC C-----UU-U .-........ .---->.... 1561 ....|..-.. .-..-..... .-.(...-.. -....|..-. ..-..).... ..-|...... 1621 .-......|. .....--... .....-...| .......... .......... |......... 1681 .|........ .......... ..(.....). .......... .......... .|.......< 1741 .......... .-....-... ......--.- ..-....... ......-... ---------- 1801 ---------- ------.-.- ......-.-- -......... ......-... ..-------- 1861 .......... .-........ .......... .......... .......... .....----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------.... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .........- .......-.. .......... 2161 .......--- ---------- ---------- ---....... ....------ ---------- 2221 ----...... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... ....------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----...... .......... ..-....--. 2461 .......... ........-. .........- -------.-- ---------- -......... 2521 .......... ....-.--.. .......... .......|.. .aua-ga-ua --gau-uc-g 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cc|-uauu 2821 --u-gu-GGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --gga|c--- ---------- 3001 --GGUGGGGC UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGA-CU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUC------- ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-cc--- -c-ccuu--- ---------- ----auGA(- 3661 GAAA-)UC-- -AAGUC-UUU GGG~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ -~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ ~-~~--~~~~ ~~~~~----- ~~~-~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 4261 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03070 LOCUS TGU03070 1788 bp DNA INV 04-NOV-1993 DEFINITION Toxoplasma gondii 18S rRNA gene. ACCESSION U03070 KEYWORDS . SOURCE Toxoplasma gondii ORGANISM Toxoplasma gondii Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Eimeriina; Sarcocystidae; Toxoplasma. REFERENCE 1 (bases 1 to 1788) AUTHORS Holmdahl,J.O., Mattsson,J.G., Uggla,A. and Johansson,K. TITLE The phylogeny of Neospora caninum and Toxoplasma gondii based on ribosomal RNA sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1788) AUTHORS Holmdahl,J.O. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Joakim O.M. Holmdahl, Department of Veterinary Microbiology, Section of Parasitology, Uppsala S-750 07, Sweden STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1788 /product="18S rRNA" source 1..1788 /organism="Toxoplasma gondii" /specific_host="Felis catus" /dev_stage="tachyzoite" /isolate="RH" BASE COUNT 470 a 359 c 457 g 502 t ORIGIN BASE COUNT 470 a 359 c 457 g 502 t 4115 others ORIGIN 1 |~~~~~~~~~ ~~~~~~ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii (strain RH Australian). ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii (strain RH Australian). ORGANISM Toxoplasma gondii (strain RH Australian). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24381 LOCUS T.gondii.4 1721 bp ds-DNA INV 03-JAN-1994 DEFINITION Toxoplasma gondii 18S ribosomal (18S rRNA) gene. ACCESSION L24381 KEYWORDS 18S ribosomal RNA. SOURCE Toxoplasma gondii (strain RH Australian) tachyzoite DNA. ORGANISM Toxoplasma gondii Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (bases 1 to 1721) AUTHORS Ellis,J.T., Luton,K., Baverstock,P.R., Brindley,P. and Johnson,A.M. TITLE Phylogeny of Neospora caninum and Toxoplasma gondii JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1721 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1721 /organism="Toxoplasma gondii" /strain="RH Australian" /dev_stage="tachyzoite" /sequenced_mol="DNA" BASE COUNT 454 a 343 c 436 g 485 t 3 others ORIGIN BASE COUNT 454 a 343 c 436 g 485 t 4185 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --GGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu a---(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gnnua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-uguucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ngaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn... 5881 ..nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.5 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii, strain ts-4. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii, strain ts-4. ORGANISM Toxoplasma gondii, strain ts-4. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U00458 ID TG458 standard; DNA; INV; 1781 BP. XX AC U00458; XX DT 02-JAN-1994 (Rel. 38, Created) DT 02-JAN-1994 (Rel. 38, Last updated, Version 1) XX DE Toxoplasma gondii, strain ts-4, small subunit ribosomal RNA gene XX KW 18S rRNA gene; SSU rRNA gene. XX OS Toxoplasma gondii OC Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsiea; Coccidia; OC Eucoccidiidae; Eimeriina; Sarcocystidae. XX RN [1] RP 1-1781 RA Nimmo K.A., Brindley P.J., Denkers E.Y.; RT "Molecular analysis of ribosomal genes of virulent and avirulent RT strains of Toxoplasma gondii"; RL Unpublished. XX RN [2] RP 1-1781 RA Nimmo K.A.; RT ; RL Submitted (09-AUG-1993) to the EMBL/GenBank/DDBJ databases. RL Nimmo K. A., Queensland Institute of Medical Research, Tropical RL Health Program, 300 Herston Road, Herston, Brisbane, Queensland, RL Australia, 4029 XX FH Key Location/Qualifiers FH FT source 1..1781 FT /strain="ts-4" FT /organism="Toxoplasma gondii" FT /macronuclear FT /dev_stage="Tachyzoite" XX SQ Sequence 1781 BP; 465 A; 361 C; 453 G; 502 T; 0 other; BASE COUNT 465 a 361 c 453 g 502 t 4122 others ORIGIN 1 |~~~~~~~~~ cugcaGAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -gGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAA- )--GC|A--- UUUCCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aggga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAU- |GCC|GU-UC UUA|GAUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(GU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-CGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-uguucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -guaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUnnnnn nnnnnnn... 5881 ..nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.6 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X65508 ID TG16SR standard; DNA; INV; 1788 BP. XX AC X65508; XX DT 04-OCT-1994 (Rel. 41, Created) DT 04-OCT-1994 (Rel. 41, Last updated, Version 8) XX DE T.gondii 16S-like rRNA XX KW 16S-like rRNA; small subunit ribosomal RNA. XX OS Toxoplasma gondii OC Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsiea; Coccidia; OC Eucoccidiidae; Eimeriina; Sarcocystidae. XX RN [1] RL revised by author 04-OCT-94 RP 1-1788 RL van de Ven E.M.E.; RL ; RL Submitted (13-APR-1992) to the EMBL/GenBank/DDBJ databases. RL E.M.E. Van De Ven, Dept of Medical Microbiology, University of RL Nijmegen, P.O. Box 9101, 6500 HB Nijmegen, THE NETHERLANDS RL RN [2] RP 1-1788 RL van de Ven E.M.E., Galama J.M., Melchers W.J.G.; RL "Sequence of a small subunit rRNA gene of Toxoplasma gondii and RL its use in phylogenetic analysis"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..1788 FT /organism="Toxoplasma gondii" FT /strain="RH" FT /dev_stage="tachyzoite" FT rRNA 1..1788 FT /product="16S-like rRNA" XX SQ Sequence 1788 BP; 475 A; 361 C; 451 G; 501 T; 0 other; BASE COUNT 475 a 361 c 451 g 501 t 4115 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gaaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGcua aaCGGA|UAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(u-- -gaaac)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGG--A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAua ----ggaauc -caaa--ccc c-----uu-u c-aga-guaa c---->aauu 1561 ggag|gg-ca a-gu-c-ugg u-g(cca-gc -agcc|gc-g gu-aa)uucc ag-|cuccaa 1621 u-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccuucag ggugug-cac ---------- 1801 ---------- -----uu-g- guacgaauuc uagcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuc-ag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --uuuuacuu ug-agaa--a 2461 auuagagugu uu-ca-aggc aggcuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cagg u--------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- uuugcc-aa| ag-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aug -----uuc-u -uaa-u|ca- a-gaacgaaa 3301 guuaggggc- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-aaacgu gca-(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CUUCAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ u-uuu----- uuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuu-aa|- ---------- 4321 ---------- ---[ccu-gc uaaauag-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u cuuagagg]- --|------- ---------- gacu-uug-c -g-u(----- 5041 --gucua-)a cgca-a-gga aguu-ugagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cuu 5221 a-g-a-uguu cugg-gcugc a-cgcgcgcu acacu--g-a ugcau----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) -gucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- ugau-g-g-g auagauuau( ugcaauua)u uaaucuuc-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-uguucc- 5641 ggu-gaau-- uau-ucgga- ccgu-ucug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug --gaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.7 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii (strain ME49). ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii (strain ME49). ORGANISM Toxoplasma gondii (strain ME49). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L37415 LOCUS TOXRRE 1738 bp ss-rRNA RNA 31-JAN-1995 DEFINITION Toxoplasma gondii 18S ribosomal RNA (18S rRNA). ACCESSION L37415 KEYWORDS 18S ribosomal RNA. SOURCE Toxoplasma gondii (strain ME49) tachyzoite rRNA. ORGANISM Toxoplasma gondii Eukaryota; Protozoa; Apicomplexa; Conoidea; Coccidea; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (bases 1 to 1738) AUTHORS Luton,K., Gleeson,M. and Johnson,A.M. TITLE rRNA gene sequence heterogeneity among Toxoplasma gondii strains JOURNAL Unpublished (1995) STANDARD full automatic COMMENT NCBI gi: 642127 FEATURES Location/Qualifiers source 1..1738 /organism="Toxoplasma gondii" /strain="ME49" /dev_stage="tachyzoite" /sequenced_mol="rRNA" rRNA 1..1738 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 458 a 348 c 442 g 490 t ORIGIN BASE COUNT 458 a 348 c 442 g 490 t 4165 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~UCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------aa caacacugg- -aaau(---- ---uuc-)au uu-cu-agug a-uuggaau- 1501 ------gaua ----ggaauc -caaa--ccc c-----uu-u c-aga-guaa c---->aauu 1561 ggag|gg-ca a-gu-c-ugg u-g(cca-gc -agcc|gc-g gu-aa)uucc ag-|cuccaa 1621 u-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--aaaag cucguaguug |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --uuuuacuu ug-agaa--a 2461 auuagagugu uu-ca-ag-c a-gcuu---- ---------- ---------- ---------- 2521 -------guc gccu-u--ga auacug-cag cauggaa|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cggu ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- uuugcc-aa| ag-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aug ---uuuucau -uaa-u|ca- a-gaacgaaa 3301 guuaggggc- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuu-aa|- ---------- 4321 ---------- ---[ccu-gc uaaauag-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u cuuagagg]- --|------- ---------- gacu-uug-c -g-u(----- 5041 --gucua-)a cgca-a-gga aguu-ugagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cuu 5221 a-g-a-uguu cugg-gcugc a-cgcgcgcu acacu--g-a ugcau----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- ugau-g-ggg auagauuau( ugcaauua)u uaaucuuc-A 5521 ACGAGG-AAU G--CCUAGUA G--CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-uguucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.P 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75473+corrections BASE COUNT 470 a 362 c 458 g 503 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugaau-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)CCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUC~~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.R 5903 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii (strain RH). ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii (strain RH). ORGANISM Toxoplasma gondii (strain RH). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M97703 LOCUS TOXRRNA 1795 bp ds-DNA INV 24-AUG-1993 DEFINITION Toxoplasma gondii ribosomal RNA small subunit gene sequence. ACCESSION M97703 KEYWORDS ribosomal RNA; ribosomal RNA small subunit. SOURCE Toxoplasma gondii (strain RH) (library: lambda 2001) tachyzoite DNA. ORGANISM Toxoplasma gondii Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Sarcocystidae. REFERENCE 1 (sites) AUTHORS Johnson,A.M., Murray,P.J., Illana,S. and Baverstock,P.J. TITLE Rapid nucleotide sequence analysis of the small subunit ribosomal RNA of Toxoplasma gondii: Evolutionary implications for the Apicomplexa JOURNAL Mol. Biochem. Parasitol. 25, 239-246 (1987) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Guay,J.-M., Huot,A., Gagnon,S., Tremblay,A. and Levesque,R.C. TITLE Physical and genetic mapping of cloned ribosomal DNA from Toxoplasma gondii: Primary and secondary structure of the 5S gene JOURNAL Gene 114, 165-171 (1992) STANDARD full automatic REFERENCE 3 (bases 1 to 1795) AUTHORS Gagnon,S., Levesque,R.C., Sogin,M.L. and Gjadhar,A.A. TITLE Molecular cloning, complete sequence of the small subunit ribosomal RNA coding region and phylogeny of Toxoplasma gondii JOURNAL Mol. Biochem. Parasitol. 60, 145-148 (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1795 /product="ribosomal RNA small subunit" source 1..1795 /organism="Toxoplasma gondii" /strain="RH" /cell_line="VERO" /dev_stage="tachyzoite" /germline /sequenced_mol="DNA" /tissue_lib="lambda 2001" BASE COUNT 470 a 362 c 459 g 503 t 1 others ORIGIN BASE COUNT 470 a 362 c 459 g 503 t 4109 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuuu--- ---------- uauac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucugcu g-gaagcagc caguccgccc ucaggggugu gcacuu-ggu gaauucuagc 1801 au-cc---uu cu-ggau-uu cuccacacuu c----auugu guggaguuuu uuccaggac- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-cCuu--- ---------- ----AUGA(- 3661 GAAA-)UCa- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auaaccu-ug gcc(gaua-) ggucu----a gguaaucuu- gugagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-AAC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUCA~~~~ ~~~~~~~~|| ||| // LOCUS T.gondii.s 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75430 BASE COUNT 469 a 361 c 459 g 504 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -auac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucuuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 CU(-GUAUUG G)ACU-ACCG U-|GGCAG-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACACUGG- -AAAU(---- ---uuc-)AU UU-CU-AGUG A-UUGGAAU- 1501 ------GAUA ----GGAAUC -CAAA--CCC C-----UU-U C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugc u-ggaa-gca gccagu--cc gc-ccucagg ggugug-cac ---------- 1801 ---------- -----uu-g- gugagu-ucu -agcauccuu cuggau-uuc uc-------- 1861 cacacuucau u-guguggag uuuuuuccag gac------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuu---- ---------- ---------- ---------- 2521 -------guc GCCU-U--GA AUACUG-CAG CAUGGAA|UA -AUAAGA-UA -GGAUuUCGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ag gaa-a-acgu ca--(----- ugcu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u u-cu-ccu-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cgg-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAG-ga u--caggaac (uucgu)--- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guucuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uauca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- -----a---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaua-) ggucu----a gguaau-cuu gugagu]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAGCAC- )GUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUucc- 5641 ggu-gaau-- uau-ucgga- ccgu-uuug- uggc-gcg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -----ugc-- 5761 c-cgaa-aug -ggaa-|guu -uugugaacc uu-aac-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUC~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Haemos 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS +++A 5903 bp RNA RNA 25-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.berg.A 5903 bp RNA RNA 03-JAN-1986 DEFINITION Plasmodium berghei. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium berghei. ORGANISM Plasmodium berghei. REFERENCE 1 (bases 1 to 2303) AUTHORS No information JOURNAL Sept 3 1986 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: M14599 Phylo:Eukaryotes,Protozoan BASE COUNT 617 a 330 c 434 g 678 t 3844 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- -----uuuau 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aau--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUAUAAG- -GCCA(---- --aauuu)UG GU-UU-UAUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AAAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuucaagg g-uauuauua uuuuaag-ua acuc------ acuugg-cga ---------- 1801 ---------- ------g-a- aucuug-g-- -cuccgccuc gauauc-uuc au-------- 1861 --gccuuguu g-uaguucuu u-uaauuaca --gacccuuu ----gagag- cccaaugauu 1921 uaucacu--- ---------- ------gggu uucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- ------aagc 2521 g--uuuucgC GUU--U--GA AUACUA-UAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ------a-uu uuuu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaauuuu--- -----uaaau 3481 a-agauuu-c c----(cuuc --)----ggg gau-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg cgaguacucu auauccuuua uugg-gagau 4381 ugguuuugac guuuaug--- ---------- --------ug ggcauauuga uuaaucaauu 4441 --gguuuacc uuuugcucuu uuucauuaug a--------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------u ucuugcguuu acgacaugcc 4621 uuuuuucuag uaaggaugu- ----auucgc uuuauu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaug CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UAUA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[aaaa cgagugc--- ---------- -----uuaaa uu----uaua 5341 u-cugugcuu aggu----g( -uuaa)a--- -gccuauguu ucaguauaua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- uaga-aau-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --au-uuu-- 5761 uauuuu-uuu -ggaa-|gga -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.cyno.A.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium cynomolgi (asexual stage). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium cynomolgi (asexual stage). ORGANISM Plasmodium cynomolgi (asexual stage). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L08241 LOCUS PFARRNASSA 2312 bp ds-DNA INV 28-JAN-1993 DEFINITION Plasmodium cynomolgi small subunit rRNA, asexual stage ACCESSION L08241 KEYWORDS ribosomal RNA small subunit; stage-specific transcript. SOURCE Plasmodium cynomolgi (strain Ceylon) (library: lambda gt11 library of Corredor & Enea) asexual DNA. ORGANISM Plasmodium cynomolgi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2312) AUTHORS Corredor,V. and Enea,V. TITLE The small subunit ribosomal RNA genes in Plasmodium cynomolgi JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 199..2270 /product="ribosomal RNA small subunit" /note="putative" BASE COUNT 716 a 368 c 484 g 744 t ORIGIN 198 bp 5' to the start of the mature rRNA BASE COUNT 622 a 342 c 444 g 664 t 3831 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ---uuuuucu 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuugu-ag cuuaau-cca ca--uaacug 1801 au-ac---ua c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucucuu uua------- ----aggucu uucuuu---- 1921 ----ugcuuc g--gca---- ---uuugaag aucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACGAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCG UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --agauuu-u cuc--(uucg --)--gaguu aau-cucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|A--GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuau gugg-gauug 4381 aauacgguug auuu--gcuu ----auuuug aag-aa-aau auuggga-ug c(guaaa--- 4441 --)gug-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aauu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc auacuguuuc 4621 -uuuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----cuaa- aau---uacg 5341 uuu------c ugcu-----( -ugcu)---- -ugcag---- ---uuucgua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- -auc-uuc-- 5761 -uuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS P.cyno.A.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium cynomolgi. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium cynomolgi. ORGANISM Plasmodium cynomolgi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07559 LOCUS PFARRXX 2047 bp ss-rRNA RNA 02-JUL-1993 DEFINITION Plasmodium cynomolgi rRNA sequence. ACCESSION L07559 KEYWORDS ribosomal RNA. SOURCE Plasmodium cynomolgi asexual rRNA. ORGANISM Plasmodium cynomolgi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2047) AUTHORS Waters,A.P., Higgins,D.G. and McCutchan,T.F. TITLE Evolutionary Relatedness of Simian Models of Plasmodium JOURNAL Mol. Biol. Evol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..2047 /note="putative" source 1..2047 /organism="Plasmodium cynomolgi" /dev_stage="asexual" /sequenced_mol="rRNA" BASE COUNT 618 a 335 c 436 g 658 t ORIGIN BASE COUNT 618 a 335 c 436 g 658 t 3856 others ORIGIN 1 |~~~~~~~~~ ~~~~~AAGGU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAU-CAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaaguaa cgcuuuu-ag cuuaau-cca ca--uaacug 1801 au-ac---ua c-----g-ug ucgacuu--- --------ug ugcguauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggucu uuucuu---- 1921 -----gcuuc g--gc----- --uuuugaag aucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --agauuu-u cuc--(uucg --)--gaguu aau-cucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuau augg-gauug 4381 aauacgguug auuu--gcuu ----auuuug aag-aa-aau auuggga-ug c(guaaa--- 4441 --)gug-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aauu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc auacuguuuc 4621 -uuuuucgug uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----cuaa- aau---uacg 5341 uu-------u cug------( -cuug)---- --caga---- ----uucgua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-gga-- ---------- ---------- 5701 -------(uu aua---)--- ---------- ---------- ---------- --uc-uuc-- 5761 -uuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.falc.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium falciparum (A stage). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium falciparum (A stage). ORGANISM Plasmodium falciparum (A stage). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M19172 LOCUS PFARGEA 2090 bp ds-DNA INV 15-NOV-1992 DEFINITION P.falciparum 18S ribosomal RNA in asexual parasites. ACCESSION M19172 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE P.falciparum DNA, clone A. ORGANISM Plasmodium falciparum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2090) AUTHORS McCutchan,T.F., De la Cruz,V.F., Lal,A.A., Gunderson,J.H., Elwood,H.J. and Sogin,M.L. TITLE Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 28, 63-68 (1988) STANDARD full automatic COMMENT NCBI gi: 160642 FEATURES Location/Qualifiers source 1..2090 /organism="Plasmodium falciparum" BASE COUNT 645 a 324 c 420 g 701 t ORIGIN BASE COUNT 645 a 324 c 420 g 701 t 3813 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au auauauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aguc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuau 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --auuuu)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GGUG ----GGAAUU -UAAA--ACC U-----UC-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuauugua acuauuc-ua ggggaa-cua uu-uuagcuu 1801 uu-gg---cu uu-------- ---------- --------aa uacgcuu--c cu-cuauuau 1861 uauguucuuu a-aauaacaa agauucu-uu uua------- ----aaauc- cccacuuuu- 1921 -----gcuuu u--gc----- uuuuuugggg auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- ------aagc 2521 auuu-acugU GUU--U--GA AUACUA-UAG CAUGGAA|UA -ACAAAA-UU -GAACaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu uuuu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGACA UU|--CGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguuaaa aa---uaaa- 3481 --agucau-c u----(uucg --)----agg uga-cuuuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg cgaguacacu auauucuuau uuga-aauug 4381 aacauaggua acuau-acau ----uuauu- caguaaucaa auuaggauau u(uuuauuaa 4441 --)aauaucc uuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uguuc uacuaauaaa uu-------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gu---uuuuu acucuauuuc 4621 ucucuucuuu uaagaaugu- ----acuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----aaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguuu--- ---------- -----uuaaa aa----uaug 5341 cuuauauuug uauc-----( --uuu)---- -gaugcuuau auuuugcaua ---------c 5401 uuuuccu-cc gcc(gaaa-) ggcgu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- auug-aau-- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-ucu-- 5761 uuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.frag.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium fragile. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium fragile. ORGANISM Plasmodium fragile. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M61722 LOCUS PFARRSS 2071 bp ss-rRNA RNA 30-MAR-1991 DEFINITION Plasmodium fragile asexually expressed ribosomal RNA small subunit. ACCESSION M61722 KEYWORDS ribosomal RNA small subunit. SOURCE Plasmodium fragile ribosomal RNA. ORGANISM Plasmodium fragile Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2071) AUTHORS Waters,A.P., Higgins,D.G. and McCutchan,T.F. TITLE Plasmodium falciparum appears to have arisen as a result of lateral transfer between human and avian hosts JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1991) In press STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..2071 /product="ribosomal RNA small subunit" /gene="small subunit rRNA" BASE COUNT 625 a 342 c 441 g 663 t ORIGIN BASE COUNT 625 a 342 c 441 g 663 t 3832 others ORIGIN 1 |~~~~~~~~~ ~~~~~~ACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCCUGUCU 61 CAAA|-GAUU AAAGCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuucua 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUAC 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AAUU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaaguaa cgcuuuu-ag cuaaau-cca ca--uaacug 1801 au-ac---ua c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggucu uucuuu---- 1921 ----ggcucc g--gcu---- ----augaag aucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uaac 2521 cuu--ugugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaaga 3481 --gcuuuu-u cuc--(uucg --)--gagaa gaa-gucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac ag-(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CUGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuau gugg-aauug 4381 aauaugguug auuu--gcuu ----auuuug cag-aa-aau auuggaa-ug c(guaacaa- 4441 --)gug-uuc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacua-aauu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc auacuauuuc 4621 -uuuucugcg uaugaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguac--- ---------- -----uuaaa aau---uacg 5341 uuu------g gccg-----( -cuug)---- -cgggc---- --auuucgua ---------c 5401 uuuuccu-cc gcu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- acgg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- -auc-uuu-- 5761 -guuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGCAGG(UUC A)CCUACGG~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.gall.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium gallinaceum. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium gallinaceum. ORGANISM Plasmodium gallinaceum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M61723 LOCUS PFARRSSAE 2102 bp ss-rRNA RNA 30-MAR-1991 DEFINITION Plasmodium gallinaceum asexually expressed ribosomal RNA small subunit. ACCESSION M61723 KEYWORDS ribosomal RNA small subunit. SOURCE Plasmodium gallinaceum ribosomal RNA. ORGANISM Plasmodium gallinaceum Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2102) AUTHORS Waters,A.P., Higgins,D.G. and McCutchan,T.F. TITLE Plasmodium falciparum appears to have arisen as a result of lateral transfer between human and avian hosts JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1991) In press STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..2102 /product="ribosomal RNA small subunit" /gene="small subunit rRNA" BASE COUNT 690 a 311 c 416 g 685 t ORIGIN BASE COUNT 690 a 311 c 416 g 685 t 3801 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au auauauauuu ---------- -auua-uaua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuu 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --aauuu)UG GU-UU-UGCA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UAAA--AAC U-----UC-C U-AAA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-aucaau-u uuuaaaaaau gcuuu--auc ggaugc-gug uuaaauggcg 1801 cu-ac---gg cg-caua-uu u--------- --------uu cacaaau--c ug-auaauau 1861 gcguuuuuua a-aauaaaau agauucu-uu uua------- ----aaaau- ucuu------ 1921 cguugcuuuu ua-agugaug ------agaa uuuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagugu- ---------- ---------- -----auaac 2521 aggcaacugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGGCA UU|--CGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CGAACA-A CUGC(-GAAA )CGGC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguuaaa aa---uaaa- 3481 --agacga-u cugau(guaa ca)aucggau ugu-cuuuua --gcuu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAUA)GC 3721 GAG-AAAGUU -AAAA--GAA -UU-|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaauacaac auauucuuaa acaa-agaag 4381 aauauagaua aaaauuaca- ----aauaag -ug-aa-aau auuagga-ua u(uuuuua-- 4441 --)aua-ucc uuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc aacuu-auuu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gu-uuuuuuu acucuauuuc 4621 uuuuuuugua uaagaaugu- ----auuuac uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aaa---uaua 5341 cgaau----g uauauauau( --uuu)auau auauac---- auuuuguaua ---------a 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UUAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aaua-aaau- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -auu-uug-- 5761 uuuuuu-uuu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.know.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium knowlesi. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium knowlesi. ORGANISM Plasmodium knowlesi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07560 LOCUS PFARRSSU 2096 bp ss-rRNA RNA 02-JUL-1993 DEFINITION Plasmodium knowlesi small subunit ribosomal RNA sequence. ACCESSION L07560 KEYWORDS ribosomal RNA; small subunit ribosomal RNA. SOURCE Plasmodium knowlesi rRNA. ORGANISM Plasmodium knowlesi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2096) AUTHORS Waters,A.P., Higgins,D.G. and McCutchan,T.F. TITLE Evolutionary Relatedness of Simian Models of Plasmodium JOURNAL Mol. Biol. Evol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..2096 /product="small subunit ribosomal RNA" /evidence=EXPERIMENTAL source 1..2096 /organism="Plasmodium knowlesi" /germline /sequenced_mol="rRNA" BASE COUNT 640 a 338 c 429 g 689 t ORIGIN BASE COUNT 640 a 338 c 429 g 689 t 3807 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuucua 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AAUU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaag-ca acgcuucuag cuauaa-auc cacauaacug 1801 au-gc---cu cc-gcgu-au cgacuu-u-- ---------- ---------- gugcgcauuu 1861 ua-gcuauua u-guguucuu u-uaauuaaa augauucu-u uuuaagauuc aucuauuaaa 1921 aauucgcuuc g--gcauaau uuuuuugaug aucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 auu--ugugC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aauuu uuuu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa--uaaga- 3481 guuuu--ucu uu-u-cucuc cggagauuag aacucuua-- --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuau guag-aauug 4381 aauauagugg auuu--guua g---auuuug aag-aa-aau auuggaauua c(guuaaau- 4441 --)gugauuc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aauu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ac---auuuc caucuauuuc 4621 -uuuuuugcg uaugaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----cuaa- aau---uacg 5341 auuuu----a gcug-----( -cuug)---- -caguu---- uauuuucgua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aauu-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- -auc-u---- 5761 -uuuuu-uuu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)UUCnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.loph.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium lophurae. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium lophurae. ORGANISM Plasmodium lophurae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X13706 LOCUS X13706 2118 bp UNA 15-JUN-1989 DEFINITION Plasmodium lophurae ribosomal RNA small subunit gene. ACCESSION X13706 REFERENCE 1 (bases 1 to 2118; enum. 1 to 2118) AUTHORS Waters,A.P. TITLE ; JOURNAL Unpublished (1988) see COMMENT for author address STANDARD unannotated staff_entry REFERENCE 2 (bases 1 to 2118; enum. 1 to 2118) AUTHORS Waters,A.P., Unnasch,T., Wirth,D.F. and McCutchan,T.F. TITLE Sequence of the p lophurae asexually expressed small rRNA gene JOURNAL Unpublished (1988) see COMMENT for author address STANDARD unannotated staff_entry BASE COUNT 701 a 317 c 413 g 687 t ORIGIN BASE COUNT 701 a 317 c 413 g 687 t 3785 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 AAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au auauauauuu ---------- -auua-uaua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- -----uuuuu 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GUCA(---- --auuuu)UG AU-UU-UGCA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UAAA--ACC U-----UCcC U-AAA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-aucuauuu uuaaggaugu gcuuu--auu ggaau---ua ugcuaauuug 1801 uc-ac---uu cg-gugu-uc auuu-uacau acauucuagu aaaaug---- ---------- 1861 uacucuuuaa a-auaaaaaa cauucu-uuu u--------- ----aaaau- ucuu------ 1921 uauugcauuu aa-ugugaug ------agaa uuuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguuu- ---------- ---------- --aaaacagc 2521 uaaa-acugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--CGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GGG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguaaaa aa---uaaa- 3481 --agaugu-u cuaau(gcaa --)auuagaa uau-cuuuua --gcuu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaauacgac auauucaugu acaa-aaaag 4381 aauauaggca aaaa--auaa cauaaguaau -ac-aa-aau auuagga-ua u(uuuua--- 4441 --)aua-ucu uaauccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uauuu-auuu u--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gu--uuuuuu guucuauuuc 4621 uuuuuuugug caagaaugu- ----auuuac uuuauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----cuaa- aaa---uaua 5341 ucau-----u guauaugua( -uuua)uaca uauaca---- -uuugguaua ---------a 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aaua-aau-- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- --au-uug-- 5761 uuuuuu-uuu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.mala.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium malariae. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium malariae. ORGANISM Plasmodium malariae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M54897 LOCUS PLMRGBAB 2319 bp ds-DNA INV 14-MAR-1991 DEFINITION P.malariae small subunit ribosomal RNA gene. ACCESSION M54897 KEYWORDS small subunit rRNA. SOURCE P.malariae Uganda-I-CDC DNA. ORGANISM Plasmodium malariae Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2319) AUTHORS Goman,M., Mons,B. and Scaife,J.G. TITLE The complete sequence of a Plasmodium malariae SSUrRNA gene and its comparison to other plasmodial SSUrRNA genes JOURNAL Mol. Biochem. Parasitol. 45, 281-288 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 173..2319 /product="small subunit ribosomal RNA" BASE COUNT 738 a 318 c 453 g 810 t ORIGIN BASE COUNT 683 a 309 c 432 g 723 t 3756 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aguc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuu 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --aauuu)UG GU-UU-UGCA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-G-AAGG C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaagg a-a-ucaaua uuuuaaguaa ugcuuuguau auuuau-aac auaguuguac 1801 gu-ua---ag aa-uaac-cg ccaagg-cuu -auauuuuuu cuguuacauu uuguuuuauu 1861 aauauauaua u-gcguucuu a-uuauaaaa augauucu-u uuuaaaauu- cuu------- 1921 ------uugu auaauuuuuu augcauggga auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- ------aaac 2521 aguu-ucugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-gu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAGCA-A CUGC(-GAAA )--GC|A--- UAUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) uaguguaaaa aa----uaaa 3481 agagaca--u ucuu(auau- )augagug-u uucuuuua-- --gaua-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -CCG|AC-GG -AA-GGGGA- --CA--CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaa-uacacu auauucuuaa guga-aauua 4381 gaauauagau aaau--ug-u gcuaauuuug auu-aa-aau auuagaaugu uuuuuuuaau 4441 aaaaacguuc uuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuu uucuuaauua ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- --------ug ca---uauuu auucuuuuuc 4621 uuuuuucgca uaagaaugu- ----auuugc uuaa-ug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----ua-ag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguau--- ---------- -----uuaaa aauauauauc 5341 -uuguuaugu uauacguau( -uucu)auau guaugcauac aaagaauaua ua-------- 5401 guuugcu--c acu(g-aa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aagg-uu--- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --au-uc--- 5761 -uuuuu-ucu -ggaa-|aaa -ucguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAAAG- 5821 UCGUAACAAG GU-------- -----U-U-C CGUCGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.reic.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium reichenowi (A type allele). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium reichenowi (A type allele). ORGANISM Plasmodium reichenowi (A type allele). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z25819 ID PRSSRRNA standard; RNA; INV; 2066 BP. XX AC Z25819; XX DT 01-SEP-1993 (Rel. 36, Created) DT 01-SEP-1993 (Rel. 36, Last updated, Version 1) XX DE P.reichenowi small subunit rRNA (from A-type allele) (partial) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Plasmodium reichenowi OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Microsporida; Haemosporina; Plasmodiidae. XX RN [1] RP 1-2066 RA Thomas A.W., Dubbeld M., Mons B., Narum D., Waters A.P.; RT "The small sub-unit type A ribosomal sequence of the chimpanzee RT malaria Plasmodium reichenowi is phylogenetically RT indistinguishable from the Plasmodium falciparum equivalent"; RL Unpublished. XX RN [2] RP 1-2066 RA Thomas A.W.; RT ; RL Submitted (31-AUG-1993) on tape to the EMBL Data Library by: RL Thomas A. W., Molecular Biological Laboratories-TNO, Chronic and RL Infectious Diseases, 2280 HV Rijswijk, The Netherlands XX FH Key Location/Qualifiers FH FT source 1..2066 FT /organism="Plasmodium reichenowi" FT /clone="pr317" FT rRNA <1..>2066 FT /partial FT /product="small subunit rRNA (from A-type allele)" XX SQ Sequence 2066 BP; 635 A; 318 C; 418 G; 695 T; 0 other; BASE COUNT 635 a 318 c 418 g 695 t 3837 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au auauauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aguc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuau 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --auuuu)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GGUG ----GGAAUU -UAAA--ACC U-----UC-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuauugua acuauau-ua ggggaa-cua uu-uuagcuu 1801 cg-cg---cu uu-------- ---------- --------aa uacgcuu--c cu-cuauuau 1861 uauguucuuu a-aauaacaa agauucu-uu uua------- ----aaauc- cccacuuu-- 1921 -----gcuuu uaugc----- -uuuuugggg auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- ------aagc 2521 auuuuacugU GUU--U--GA AUACUA-UAG CAUGGAA|UA -ACAAAA-UU -GAACaGGCU 2581 ga-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu uuuu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAG UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGACA UU|--CGUAU UCGGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguuaaa aa---uaaa- 3481 --agucau-c u----(uucg --)----agg uga-cuuuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac agg(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUUG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgcu auauucuuaa uuga-aauug 4381 aauauaggua auuau-acau ----uuauuc agu-gaucaa auuaggauau u(uuuauuaa 4441 --)aauaucc uuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uguuc uacuaauaau uu-------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gu---uuuuu acucuauuuc 4621 ucucuucuuu uaagaaugu- ----acuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aaa---uaug 5341 cauuuauuug uauc-----( --uuu)---- -gaugcuuau auuuugcaua ---------c 5401 uuuuccu-cc gcc(gaaa-) ggcgu----a gguaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- augg-aau-- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-ucu-- 5761 uuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C Cnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.A.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax. ORGANISM Plasmodium vivax. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X13926 LOCUS X13926 1943 bp UNA 15-SEP-1989 DEFINITION Plasmodium vivax small subunit (SSU) rRNA gene. ACCESSION X13926 REFERENCE 1 (bases 1 to 1943) AUTHORS Waters,A.P. TITLE ; JOURNAL Unpublished (1989) see COMMENT for author address STANDARD unannotated staff_entry REFERENCE 2 (bases 341 to 1943) AUTHORS Waters,A.P. and McCutchan,T.F. TITLE Partial sequence of the asexually expressed SSU rRNA gene from plasmodium vivax JOURNAL Nucleic Acids Res. 17, 2135-2135 (1989) STANDARD unannotated staff_entry BASE COUNT 591 a 314 c 409 g 629 t ORIGIN BASE COUNT 481 a 269 c 337 g 521 t 4295 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gga]------ 181 -----|---A CU|C-GCAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guu-cu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuucu-ag cuuaau-cca ca--uaacug 1801 au-ac---uu c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggacu uucuuu---- 1921 -----gcuuc g--gc----- ---uuggaag uccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au--ugcgcC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAA--UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|cuu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --aauuuu-c uc---(uucg --)---gagu uua-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UU-|-C-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuac gugg-gacug 4381 aauucgguug auuu--gcuu ----acuuug aag-aa-aau auuggga-aa c(guaaca-- 4441 --)guu-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aguu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuuuc auacuguuuc 4621 --uuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.A.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07367 Same as sequence sent by John Rogers on March 6th 1995 LOCUS PVU07367 2063 bp DNA INV 22-JUN-1994 DEFINITION Plasmodium vivax El Salvador asexual blood stage small subunit rRNA gene. ACCESSION U07367 KEYWORDS . SOURCE Plasmodium vivax ORGANISM Plasmodium vivax Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodium. REFERENCE 1 (bases 1 to 2063) AUTHORS Li,J., McConkey,G., Wirtz,R., Sattabongkot,J. and McCutchan,T.F. TITLE Transition of Plasmodium vivax ribosome types corresponds to sporozoite differentiation in the mosquito BASE COUNT 614 a 350 c 441 g 658 t 3840 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuucu-ag cuuaau-cca ca--uaacug 1801 au-ac---uu c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggacu uucuuu---- 1921 -----gcuuc g--gc----- ---uuggaag uccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAA--UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u-uu|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --aauuuu-c uc---(uucg --)---gagu uua-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgac auauucuuac gugg-gacug 4381 aauucgguug auuu--gcuu ----acuuug aag-aa-aau auuggga-ua c(guaaca-- 4441 --)guu-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aguu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuuuc auacuguuuc 4621 -uuuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuucgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUGU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aggg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuc-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAG-(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.A.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax Sal 1. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax Sal 1. ORGANISM Plasmodium vivax Sal 1. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03079 LOCUS PVU03079 2064 bp DNA INV 23-NOV-1993 DEFINITION Plasmodium vivax Sal 1 blood stage small subunit rRNA gene. ACCESSION U03079 KEYWORDS . SOURCE Plasmodium vivax ORGANISM Plasmodium vivax Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodium. REFERENCE 1 (bases 1 to 2064) AUTHORS Qari,S.H., Goldman,I.F., Collins,W.E. and Lal,A.A. TITLE Asexual and sporozoite stage specific small subunit ribosomal RNA genes of Plasmodium vivax JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2064) AUTHORS Goldman,I.,F. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Goldman I. F., Centers for Disease Control and Prevention, Malaria Branch, 4770 Buford Hwy, Chamblee, GA 30431 USA STANDARD full automatic FEATURES Location/Qualifiers source 1..2064 /strain="Sal 1" /organism="Plasmodium vivax" /specific_host="Homo sapiens" /germline /macronuclear /dev_stage="blood stage" BASE COUNT 615 a 349 c 442 g 658 t ORIGIN BASE COUNT 615 a 349 c 442 g 658 t 3839 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcauauuu ---------- -uaua-ugua gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ----uuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuucu-ag cuuaau-cca ca--uaacug 1801 au-ac---uu c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucu-uu uua------- ----aggacu uucuuu---- 1921 -----gcuuc g--gc----- ---uuggaag uccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --aauuuu-c uc---(uucg --)---gagu uua-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuac gugg-gacug 4381 aauucgguug auuu--gcuu ----acuucg aag-aa-aau auuggga-ua c(guaaca-- 4441 --)guu-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aguu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuuuc auacuguuuc 4621 -uuuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GCCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuucgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUGGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aggg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuc-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.A.4 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U93233 K1294 (THAI ISOLATE) P.vivax A gene 1.883 kb BASE COUNT 559 a 316 c 406 g 602 t 4020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~GG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-a-AACU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ucgaua uuuuaagcaa cgcuucu-ag cuuaau-cca ca--uaacug 1801 au-ac---uu c-----g-ua ucgacuu--- --------ug ugcgcauu-u ug-cuauuau 1861 -guguucuuu u-aauuaaaa ugauucc-uu uua------- ----aggacu uucuuu---- 1921 -----gcuuu g--gc----- ---uuggaag uccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---ugcgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 ag-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uu-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGCUU-UG GAU-G-A--- ----(----- ---------) aagauuuuaa aa---uaag- 3481 --aauuuu-c uc---(uucg --)---gagu uua-uucuua --gauu-gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGUGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg caaauacgau auauucuuac gugg-gacug 4381 aauucgguug auuu--gcuu ----acuuug aag-aa-aau auuggga-aa c-guaaca-- 4441 ---guu-ucc cuuuccc--- ---------- ---------- ---------- ---------- 4501 -----uuuuc uacuu-aguu c--------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuuuc auacuguuuc 4621 -uuuuucgcg uaagaaugu- ----auuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuucgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aggg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuc-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UC~~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS +++S 5903 bp RNA RNA 25-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.berg.S 5903 bp RNA RNA 03-JAN-1986 DEFINITION Plasmodium berghei C. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium berghei C. ORGANISM Plasmodium berghei C. REFERENCE 1 (bases 1 to 2303) AUTHORS No information JOURNAL Sept 3 1986 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: M19712 Phylo:Eukaryotes,Protozoan BASE COUNT 635 a 329 c 431 g 664 t 3844 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------au augcacau-- ---------- -uuau-ugca gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- -----uuuau 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG A)CCU-AACA U-|GGCUU-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aau--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUAUAAG- -GCCA(---- --aauuu)UG GU-UU-UAUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--ACC U-----UC-C C-A-A-AAAU C---->A-UU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuucaagg g-uauaauua uuuuaa-gca a----cuc-- acuugg-aaa ---------- 1801 ---------- ------a-a- aucaug-a-- -cuu--cugu cacugc-uuu ua-----ucc 1861 uuguugcagu u-cuuuuaau acagggcccu uu-------- ----gagag- ccc------- 1921 ---------- --auuaauuu augacugggu uucu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UU-AA-AG-C AAACagaua- ---------- ---------- ----aagcgu 2521 auuuuacugU GUU--U--GA AUACUA-UAG CAUGGAA|UA -ACAACA-UU -GAAUaGGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-gu uuuu|gaaaa 2821 -ac-uuuucu -ua-uu---- --------uu GGC-UUaGAU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --AGUGU-UG GAU-G-A--- ----(----- ---------) aaauuua--- -----uaaau 3481 a-aaacuauc uucu-(uuaa --)-aggagu agu-uuuuua --gau--gcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg cgaguacucu auauccuuua uugg-gagau 4381 ugguuuugac guuuaug--- ---------- --------ug ggcauauuga uuaaucaauu 4441 --gguuuacc uuuugcucuu uuucauuaug a--------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------u ucuuucguuu acgacaugcc 4621 uuuuuucuag uaaggaugu- ----auucgc uuuauu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaug CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UAUA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[aaaa cgagugc--- ---------- -----uuaaa uu----uaua 5341 u-cugugcuu aggu----g( -uuaa)---- agccuauguu ucaguauaua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucaau]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- uaga-aau-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --au-uuu-- 5761 uauuuu-uuu -ggaa-|gga -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--U 5881 UUUUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.cyno.S 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium cynomolgi (sporozite stage). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium cynomolgi (sporozite stage). ORGANISM Plasmodium cynomolgi (sporozite stage). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L08242 LOCUS PFARRNASSB 2537 bp ds-DNA INV 28-JAN-1993 DEFINITION Plasmodium cynomolgi small subunit rRNA, sexual (sporozoite) stage ACCESSION L08242 KEYWORDS ribosomal RNA small subunit; stage-specific transcript. SOURCE Plasmodium cynomolgi (strain Ceylon) (library: lambda gt11 library of Corredor & Enea) sexual stage (sporozoite) DNA. ORGANISM Plasmodium cynomolgi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2537) AUTHORS Corredor,V. and Enea,V. TITLE The small subunit ribosomal RNA genes in Plasmodium cynomolgi JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 219..2385 /product="ribosomal RNA small subunit" /note="putative" BASE COUNT 793 a 414 c 524 g 806 t ORIGIN BASE COUNT 668 a 369 c 454 g 676 t 3736 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------ac augcauauau ---------- ucaua-ugca gag]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------u uuuuuuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGACU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -ACCA(---- ---aaac)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--UUC U-----UC-C C-A-U-AAUA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ccgaua uuuuaa-uaa ugcuguu-ag cuagag-cca caaaaaguug 1801 ag-cc---a- uc-ucgg-uu ucggcuuua- --------ug ugcgcaucuc uaccuaucaa 1861 -guguuuuuu u-aauuaaag uguuucu-uu uua------- ----aaauc- uuc------- 1921 ---------u cuagcuaaaa cauauggaag guuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAAAGUGU UC-AA-AG-C AAACagaua- ---------- ---------- ------uagc 2521 au---uucgC GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu a--u|guuuc 2821 -uu-uuuucu -ua-uuu--- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGGCG UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GA|G-ca UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaguaaaaca aa---uaag- 3481 --gauagu-c uc---(uucg --)---ggga uag-uccuua --gauu-ucu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgac auauuuuuau aucg-aauug 4381 gauauguaug auuu--gcua aauugcgguc gca-aaua-a ugaagaucuu gauugcuuuu 4441 --cacgucag uguuuuccag aaucguu--g acgugacuag uauauacucg cu--ccuucu 4501 guucccug-- gacuucacuu cccug----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc auaccguuuc 4621 -cuuuuugug uagaaaugu- ----auuuau uuua-ug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[acaa cgaguua--- ---------- -----cuag- aaa---uaug 5341 c--auauguu auuugugcu( uauuc)agc- cuuuuaucau -uaucgcaua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu cuuagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAC-GAU (-UCAUUAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-AGACau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aaga-agau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cua-- 5761 cauuuu-ucu -ggaa-|aaa -ucguaaauc cu-GUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS P.falc.S 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium falciparum (C gene). ACCESSION No information KEYWORDS No information. SOURCE Plasmodium falciparum (C gene). ORGANISM Plasmodium falciparum (C gene). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M19173 LOCUS PFARGEB 2126 bp ds-DNA INV 15-NOV-1992 DEFINITION P.falciparum 18S ribosomal RNA not in asexual parasites. ACCESSION M19173 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE P.falciparum DNA, clone B. ORGANISM Plasmodium falciparum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2126) AUTHORS McCutchan,T.F., De la Cruz,V.F., Lal,A.A., Gunderson,J.H., Elwood,H.J. and Sogin,M.L. TITLE Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 28, 63-68 (1988) STANDARD full automatic REFERENCE 2 (bases 1 to 2126) AUTHORS Sogin,M.L. JOURNAL Unpublished (1990) STANDARD full automatic COMMENT [2] revises [1]. Computer-readable copy of sequence for [2] kindly submitted by M.L.Sogin, 01-AUG-1990. SOGIN@EVOL1.MBL.EDU. NCBI gi: 160643 FEATURES Location/Qualifiers source 1..2126 /organism="Plasmodium falciparum" BASE COUNT 704 a 296 c 412 g 714 t ORIGIN BASE COUNT 676 a 272 c 393 g 687 t 3875 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CACA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------ac auauguaagu ---------- -aaua-uauu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 augu<----- ---------- ---------- ---------- ---------- ----uuuuaa 301 u>AUAAGG-A UAACUACGG( -A-AAAU)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -uuaucaauc -ga|guaucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG A)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aaa--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAU- -AUCG(---- --aaaaa)UG AU-UU-UGUA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UACA--AGG U-----UC-C U-AGA-GAAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCAUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG UUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauauuaaag a-auccgaug uuuca-uuua aacugguu-- ugggaa--aa ccaaauauau 1801 ua-ua---ua uu-uugc-uu uguucaaaau aa------gg uuuucua--a ua-aauuaug 1861 uuuuuaucag a-ua-ugaca gaaucuu-uu uua------- ----aaauc- ucu------- 1921 ---ucaauau gcuuuuauug cuuuugagag guuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AAUUAAGUGU UC-AU-AA-C AGACgggua- ---------- ---------- gucaugauug 2521 aguucauugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAU-AU -GAAUaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ------uuau uuuuuuuuuc auuauuuuuu 2821 -uu-gauauu -cu-ua---- --------uu AGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC U--------- 3001 -UUGGGGGCA UU|--CGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-AAGA-U-U 3061 UUCUG-GAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------CUA ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUACC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) auauaaaaaa uauauaaaua 3481 uguagcau-u uc---(uuag --)---ggaa ugu-ugauuu uauauuagaa uugcu----- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacacu auauuuuuau uuga-aauug 4381 aauauaggua auuau-acau guuuauucag ugu-ucaaau uaggauauuu uuuuuauuaa 4441 --aauauucu uuucccuguu uuacuaauaa uuu------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- guuuuuuuuu acucuauuuc 4621 ucucuucuuu uaagaaugu- ----acuugc uugauuaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----auaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-GUG-U -G-U(----- 5041 --AUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UAAA CUAG-GCUGC A-CGCGUGCU ACAAU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa caaguug--- ---------- -----uuaaa a-----augu 5341 a--------c uua------( -uaaa)---- --uaag---- -----ugugu acaa-----u 5401 uuuuccu-gu acu(gaaa-) aguau----a gguaaucuuu aucagu]--- ---------- 5461 -------AUA UAU-C-G--- UAAU-U-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AA- ---------- ---------- ---------- ---------- ---------- 5581 ---------- --|------- ----GCCCGU CGCUCC-U-A CC-GAu--uG AA-AGAUau- 5641 gau-aaau-- ugu-uugga- uaug-aauu- aaaa-uaaua gaa------- ---------- 5701 ---------- ---------- ---------- ---------- ---------- ---------- 5761 ---------- ------|--- ---------- ---------- ---------- --------G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS P.viva.S.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax El Salvador sporozoite form. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax El Salvador sporozoite form. ORGANISM Plasmodium vivax El Salvador sporozoite form. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07368 Same as sequence sent by John Rogers on March 6th 1995. LOCUS PVU07368 2147 bp DNA INV 22-JUN-1994 DEFINITION Plasmodium vivax El Salvador sporozoite form small subunit rRNA gene. ACCESSION U07368 KEYWORDS . SOURCE Plasmodium vivax ORGANISM Plasmodium vivax Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodium. REFERENCE 1 (bases 1 to 2147) AUTHORS Li,J., Wirtz,R., McConkey,G., Sattabongkot,J. and McCutchan,T.F. TITLE Transition of Plasmodium vivax ribosome types corresponds to sporozoite differentiation in the mosquito JOURNAL Mol. Biochem. Parasitol. (1994) In press BASE COUNT 646 a 361 c 464 g 676 t 3756 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------ac augcauauuu ---------- uuaua-ugcg gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ---uuuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|UGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -ACCA(---- ---aaac)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--UCC U-----UC-C C-A-U-AAUA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ccaaua uuuuaa-uaa cgccguu-ag cuagau-cca caagggguug 1801 ag-cc---aa uc-acgg-uu ucggcuuc-- --------ug ugcgcauc-c uaccuaucaa 1861 -gcguuuuuu u-aauuaaag uguuucu-uu uua------- ----aaauc- uuc------- 1921 ---------u uuaccuuaac cauauggaag auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAAAGUGU UC-AU-AG-C AAACagaua- ---------- ---------- ------cagc 2521 au---ugcgC GUU--U-uGA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu a--u|guuuc 2821 -uu-uuuuuu -ua-uuu--- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-AAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAG )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUACC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaguuaaaca aa---uaag- 3481 --gauagu-c uc---(uucg --)---ggga uag-uccuua --gauu-ucu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuc-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgac auauuuuuau gucg-gauug 4381 gaucuggaug auuu--gcuu auauugaggu gca-aucuaa auaggggauu gcaauuauac 4441 --uucguguc gguguuucuu aaucgaauag cugaugcguu ugguauauug cuuuccuu-u 4501 uuuuuauuuc ugcgcuucuu uacuug---- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc guaccguuuc 4621 -cuuuuugug uagaaaugu- ----auuugc auuauau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[acaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuacgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAC-GAU (-UCAUUAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuu-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-GUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.S.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax SAL 1 sporozoite. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax SAL 1 sporozoite. ORGANISM Plasmodium vivax SAL 1 sporozoite. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03080 LOCUS PVU03080 2146 bp DNA INV 23-NOV-1993 DEFINITION Plasmodium vivax SAL 1 sporozoite small subunit rRNA gene. ACCESSION U03080 KEYWORDS . SOURCE Plasmodium vivax ORGANISM Plasmodium vivax Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodium. REFERENCE 1 (bases 1 to 2146) AUTHORS Qari,S.H., Goldman,I.F., Collins,W.E. and Lal,A.A. TITLE Asexual and sporozoite stage specific small subunit ribosomal RNA genes of Plasmodium vivax JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2146) AUTHORS Goldman,I.,F. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Goldman I. F., Centers for Disease Control and Prevention, Malaria Branch, 4770 Buford Hwy, Chamblee, GA 30431 USA STANDARD full automatic FEATURES Location/Qualifiers source 1..2146 /strain="SAL 1" /organism="Plasmodium vivax" /specific_host="Homo sapiens" /germline /macronuclear /dev_stage="sporozoite" BASE COUNT 647 a 360 c 463 g 676 t ORIGIN BASE COUNT 647 a 360 c 463 g 676 t 3757 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUGA-AA GU|------- |--------- ----[----- 121 ---------- --------ac augcauauuu ---------- uuaua-ugcg gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aauc-- ----uacuug 241 acau<----- ---------- ---------- ---------- ---------- ---uuuuuuc 301 u>AUAAGG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|UGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -ACCA(---- ---aaac)UG GU-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--UCC U-----UC-C C-A-U-AAUA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ccaaua uuuuaa-uaa cgccguu-ag cuagau-cca caagggguug 1801 ag-cc---aa uc-acgg-uu ucggcuuc-- --------ug ugcgcauc-c uaccuaucaa 1861 -gcguuuuuu u-aauuaaag uguuucu-uu uua------- ----aaauc- uuc------- 1921 ---------u uuaccuuaac cauauggaag auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAAAGUGU UC-AU-AG-C AAACagaua- ---------- ---------- ------cagc 2521 au---ugcgC GUU--U-uGA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu a--u|guuuc 2821 -uu-uuuuuu -au-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-AAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAG )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUACC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaguuaaaca aa---uaag- 3481 --gauagu-c uc---(uucg --)---ggga uag-uccuua --gauu-ucu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgac auauuuuuau gucg-gauug 4381 gaucuggaug auuu--gcuu auauugaggu gca-aucuaa auaggggauu gcaauuauac 4441 --uucguguc gguguuucuu aaucgaauag cugaugcguu ugguauauug cuuuccuu-u 4501 uuuuuauuuc ugcgcuucuu uacuug---- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc guaccguuuc 4621 -cuuuuugug uagaaaugu- ----auuugc auuauau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[acaa cgaguua--- ---------- -----uuaa- aau---uacg 5341 auu------c ag-------( -cuug)---- ---cug---- ---uuacgua ---------u 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAC-GAU (-UCAUUAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuu-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-GUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.S.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U93234 K1294 (THAI) P. vivax S gene 1.993 kb BASE COUNT 591 a 337 c 433 g 632 t 3910 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~GG-A UAACUACGG( -A-AAAG)CU GUAGC-UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|UGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---auc-)UG GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--UCC U-----UC-C C-A-U-AAUA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucaaag a-a-ccaaua uuuuaa-uaa cgccguu-ag cuagau-cca caagggguug 1801 ag-cc---aa uc-acgg-uu ucggcuuc-- --------ug ugcgcauc-c uaccuaucaa 1861 -guguuuuuu u-aauuaaag uguuucu-uu uua------- ----aaauc- uuc------- 1921 ---------u uuaccuuaac cauauggaag auuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAAAGUGU UC-AU-AG-C AAACagaua- ---------- ---------- ------cagc 2521 au---ugcgC GUU--U-uGA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu a--u|guuuc 2821 -uu-uuuuuu -ua-uuu--- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC C-AAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAG )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUACC GAC|UA|--- 3421 --GGUUU-UG GAU-G-A--- ----(----- ---------) aaguuaaaca aa---uaag- 3481 --gauagu-c uc---(uucg --)---ggga uag-uccuua --gauu-ucu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAUuG-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaguacgac auauuuuuau gucg-gauug 4381 gaucuggaug auuu--gcuu auauugaggu gca-aucuaa auaggggauu gcaauuauac 4441 --uucguguc gguguuucuu aaucgaauag cugaugcguu ugguauauug cuuuccuuuu 4501 uuuuuauuuc ugcgcuucuu uacuug---- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gc---uuauc guaccguuuc 4621 -cuuuuugug uagaaaugu- ----auuugc auuauau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACG-AUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUGU----- ---------- 5281 ---------- -----[acaa cgaguua--- ---------- -----cuaga aa----uaug 5341 cauuuc---g cuauuuugug cuuauccagc cuuuuuagca uuauggcaua ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaaucuuu aucagu]--- ---------- 5461 -------ACA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAC-GAU (-UCACUAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aagg-ggau- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- --au-cuu-- 5761 cuuuuu-ucu -ggaa-|aaa -ccguaaauc cu-AUC-U-U UUAA-AGGAA GG-AGAA-G- 5821 UCG~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS +++O 5903 bp RNA RNA 13-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.viva.O.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium vivax. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium vivax. ORGANISM Plasmodium vivax. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U93095 Plasmodium vivax S gene BASE COUNT 656 a 393 c 504 g 676 t 3674 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC UU|GCCAGU- A-GUCA-UAU acGCUUGUCU 61 CAAA|-GAUU AA-GUCAUGC U-AGUGA-AA GG|------- |--------- ----[----- 121 ------a--- -------uau acgcauauau ------u--u gcaua-ugca gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAA-cagu- uau-aaua-- ----uacugg 241 acau<----- ---------- ---------- ---------- ---------- ---uuuuucc 301 c>AUAAGG-A UGAUUACGG( -A-AAAG)CU GUAGC-CAA- UAUUUG---- ---------- 361 ---------- ---------- ---------- -- -guguccauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGC-A A-CGGG|GAA -U-(UAUA-) 1201 GUU-CGAUU- CCC|GAGAGG G-AGCU(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-Au auagcagca| ugg-ga-GU- AAAUU-ACCC -AACUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-GUu-- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---aua-)UG GC-UU-UAUA A-UUGGAAU- 1501 ------GGUG ugcggggggg gugguuuuau c-----cuuc ucccaaAACA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU CGUUG-CAG| UUA--UAAUG UUCGUAGUUA |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuugaaag a-a-ucaaca uuuuaagcaa cgc-guuuag cuuaau-cca cacgacuggu 1801 gc-uu---cg ua-ucgg-uu gguacuuagc aucgacauug ugcgcauuuu gcuacuacgu 1861 guucuucuaa u-uaaaauga uucuuuuu-- ---------- ----aggggu uuccuu---- 1921 ----uguuuc g--gca---- ----uugaau cccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACCU UG-CGAA--A 2461 AAUAAACUGU UC-AA-AG-G AAACaguua- ---------- ---------- -uauuauagc 2521 au---ugcgC GUU--U-cGA AUACUA-CAG CAGGGAA|UA -ACAAAA-UU -GAACgAGUa 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu u--g|guu-c 2821 -au-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UU--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC A--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUGC)CG-U -CGUAA|UCU UA--ACC-AU AAACAAUGCC GAC|UA|gac 3421 uaGGCUU-UA GAU-G-A--- ----(----- ---------) aaaguuuuaa aa---uaag- 3481 --aguuuu-c uc---(uucg --)---gagu uaaccucuua --gauuugcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----agGG(- 3661 GAAA-)UCa- -AAacC-uuu gGGU|-U|C- UGGGGAAAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU AAAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAG-CA )CGGG--AAA GCUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gaa aga(uugaga g-a)--gagc ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAC-G-CAUG |GCC|GU-UU UCA|GUUCG- U|GAa(uau- 4261 --)-UUGUC- -GGG(UU-AA UC)CCGAUG- AU-GAACGGG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAGUAGcgg caaauacgau acauucuuag guaa-gauug 4381 aaccugguug auu--ugcuc ----auuucg aag-ug-cac gcauga-gga ucgggauuau 4441 gug-acgcgu cagu(uuuuu ucugccgauu u)acugaugc agcacauauu ucucguucuu 4501 ucauucgugc acuucga-aa uaa------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gca---aauc aaccagguuc 4621 -aauuuuacc uaagaaugug uuucauuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-GUG-U -G-U(----- 5041 --GUGUA-)A CACA-A-GGA AGAU-UAAGG CAACAAaaCA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---cCUG-CG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GAAGC --CCCGUGCU ACACG--G-A UAUGU----- ---------- 5281 ---------- -----[gcaa cgaguug--- ---------- -----uuaga agugugcaug 5341 ug-uuauuug ugcu-uaug( -gagc)cguu uagcau-ca- ---ucgcaug ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaauauuu aucagu]--- ---------- 5461 -------ACG UAU-C-G--- UGAU-G-AGG AUAuau---( UGCAAUUA)u caaucUCG-A 5521 CCGAGG-AAC G--UCUAGUA AG-CGG-GAU (-UCACCAG- )AUUGC-G-C -UGACUACG- 5581 U-CCCUGCGC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-AGAUac- 5641 gau-gaau-- cgu-uugaa- uaag-agaa- aagg-ggau- ---------- ---------- 5701 -------(ua uauauc)--- ---------- ---------- ---------- ---u-uuu-- 5761 uuuuuc-ucu -gaaa-|gaa -ucgaaaauc uu-AUC-U-U UUAA-AGGAA GG-AGAA--- 5821 ucgacacguu caaguucacu acgagU-U-C CaUAGG(uuc a)UCUACGGA AGG-UCU--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS P.viva.O.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U93235 BASE COUNT 595 a 358 c 467 g 611 t 3872 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~GG-A UAACUACGG( -A-AAAG)CU GUAGC-CAA- UAUUUG---- ---------- 361 ---------- ---------- ---------- -- -guguccauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGC-g A-CGGG|GAA -U-(UAUA-) 1201 GUU-CGAUU- CCC|GAGAGG G-AGCU(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-Au auagcagca| ugg-ga-GU- AAAUU-ACCC -AACUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-GUu-- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCCA(---- ---aua-)UG GC-UU-UAUA A-UUGGAAU- 1501 ------GGug ugcggggggg gugguuuuau c-----cucc ucccaaAACA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-aC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU CGUUG-CAG| UUA--UAAUG UUCGUAGUUA |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuugaaag a-a-ucaaca uuuuaagcaa cgc-guucag cuuaau-cca cacgacuggu 1801 gc-uu---cg ua-ucgg-uu gguacuuagc aucgacauug ugcgcauuuu gcuacuacgu 1861 guucuucuaa u-uaaaauga uucuuuuu-- ---------- ----aggggu uuccuu---- 1921 ----uguuuc g--gca---- ----uugaau cccu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACCU UG-CGAA--A 2461 AAUAAACUGU UC-AA-AG-G AAACaguua- ---------- ---------- -uauuauagc 2521 au---ugcgC GUU--U-cGA AUACUA-CAG CAGGGAA|UA -ACAAAA-UU -GAACgAGUa 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-cu u--g|guu-c 2821 -au-uuuucu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UU--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGC A--------- 3001 --UGGGGGCA UU|--UGUAU UCAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUGC)CG-U -CGUAA|UCU UA--ACC-AU AAACAAUGCC GAC|UA|gac 3421 uaGGCUU-UA GAU-G-A--- ----(----- ---------) aaaguuuuaa aa---uaag- 3481 --aguuuu-c uc---(uucg --)---gagu uaaccucuua --gauuugcu ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-GCCuu-- ---------- ----agGG(- 3661 GAAA-)UCa- -AAacC-uuu gGGU|-U|C- UGGGGAAAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU AAAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAG-CA )CGGG--AAA GCUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gaa aga(uugaga g-a)--gagc ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAC-G-CAUG |GCC|GU-UU UCA|GUUCG- U|GAa(uau- 4261 --)-UUGUC- -GGG(UU-AA UC)CCGAUG- AU-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAGUAGcgg caaauacgau acauucuuag guaa-gauug 4381 aaccugguug auu--ugcuc ----auuucg aag-ug-cac gcauga-gga ucgggauuau 4441 gug-acgcgu cagu(uuuuu ucugccgauu u)acugaugc agcacauauu ucucguucuu 4501 ucauucgugc acuucga-aa uaa------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- gca---aauc aaccagguuc 4621 -aauuuuacc uaagaaugug uuucauuugc uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACA-GUG-U -G-U(----- 5041 --GUGUA-)A CACA-A-GGA AGUU-UAAGG CAACAAaaCA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---cCUG-CG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GAAGC --CCCGUGCU ACACG--G-A UAUGU----- ---------- 5281 ---------- -----[gcaa cgaguug--- ---------- -----uuaga agugugcaug 5341 ug-uuauuug ugcu-uaug( -gagc)cguu uagcau-ca- ---ucgcaug ---------c 5401 uuuuccu-cc acu(gaaa-) agugu----a gguaauauuu aucagu]--- ---------- 5461 -------ACG UAU-C-G--- UGAU-G-AGG AUAuau---( UGCAAUUA)u caaucUCG-A 5521 CCGAGG-AAC G--UCUAGUA AG-CGG-GAU (-UCACCAG- )AUUGC-G-C -UGACUACG- 5581 U-CCCUGCGC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-AGAUac- 5641 gau-gaau-- cgu-uugaa- uaag-agaa- aagg-ggau- ---------- ---------- 5701 -------(ua uauauc)--- ---------- ---------- ---------- ---u-uuu-- 5761 uuuuuc-ucu -gaaa-|gaa -ucgaaaauc cu-AUC-U-U UUAa-AGGAA GG-AGAA-g- 5821 ucg~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS +++PARTIAL 5903 bp RNA RNA 25-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.flor.p 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium floridense. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium floridense. ORGANISM Plasmodium floridense. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11717 LOCUS P.floridense 1917 bp ds-DNA INV 03-JAN-1994 DEFINITION Plasmodium floridense 18S ribosomal RNA. ACCESSION L11717 KEYWORDS 18S ribosomal RNA. SOURCE Plasmodium floridense erythrocytic form DNA. ORGANISM Plasmodium floridense Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 1917) AUTHORS Dame,J.B., Telford,S.R.Jr.., Yowell,C.A., Higgins,D. and McCutchan,T.F. TITLE Unknown at present JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1917 /product="18S ribosomal RNA" /gene="18S rRNA" /note="putative" source 1..1917 /organism="Plasmodium floridense" /dev_stage="erythrocytic form" /sequenced_mol="DNA" BASE COUNT 628 a 279 c 379 g 631 t ORIGIN BASE COUNT 628 a 279 c 379 g 631 t 3986 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aaa--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CGAUGCAAG- -GCCA(---- --aauuu)UG GU-UU-UGCA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UAAA--AAC U-----UC-C U-AAA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuucaaag a-aucu-auu ucuaagg-aa uacauuauug gaccgc-gca uuuauauaaa 1801 gg-au---ug cg-uuuu-aa cgcuuu-acu -uaauacuug auu------- ---------- 1861 --cuucaaua a-guauuucu uaaaauaaau aaugguucuu uuuaaaaaa- uua-uuuuuu 1921 --gcauauuu uu-uaugcaa uua---gaau uuuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAACaguua- ---------- ---------- -----aaaca 2521 guuuuacugU GUU--U--GA AUACUA-CAG CAUGGAA|UA -ACAAAA-UU -GAACaAGUC 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----ga-ug auau|guu-c 2821 -uu-uauccu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGGGACA UU|--AGUAU UCAGAAG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CUAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguaaaa aa--uaagaa 3481 auguuccaac guaacaauug gaauauuucu uagcuugcu- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UA-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAUUAGcgg uaaauacgug auauucuuau aaca-aauug 4381 uauaucg--- ----aauaga aaacauauaa aag-uugaaa auauuagaau -acuauuauu 4441 --guauucuu uucccuuuuc uucucuuugu aguuuucugu ucuuuuacuu uuuaauguaa 4501 gaauguauuu acuugauugu aaagcu---- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UUG-U -G-U(----- 5041 --GUCUA-)A CACA-A-GGA AGUU-UAAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UAAA CUAG-GCUGC A-CGCGUGCU ACACU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguua--- ---------- -----uuaaa aa---uauau 5341 ----cuuugu auauauauau auuucuauau auguauauuc auaugauaua a--------- 5401 uuuuccu-uc acu(gaaa-) agugu----a ggcaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUA-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaga- aaaa-gau-- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- --au-uuu-- 5761 -uuucuuuuu -ggaa-|aaa -ucguaaau~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.mexi.p 5903 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium mexicanum. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium mexicanum. ORGANISM Plasmodium mexicanum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11716 LOCUS PFARG18S 1978 bp ds-DNA INV 04-MAR-1993 DEFINITION Plasmodium mexicanum 18S rRNA gene, partial gene. ACCESSION L11716 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Plasmodium mexicanum erythrocytic form DNA. ORGANISM Plasmodium mexicanum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoa; Coccidia; Eucoccidiida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 1978) AUTHORS Dame,J.B., Yowell,C.A., Telford,S.R.Jr.., Higgins,D. and McCutchan,T.F. JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1978 /product="18S ribosomal RNA" /evidence="EXPERIMENTAL" BASE COUNT 682 a 265 c 365 g 666 t ORIGIN BASE COUNT 682 a 265 c 365 g 666 t 3925 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~UAA- UACUUG---- ---------- 361 ---------- ---------- ---------- -- -guaucaauc -ga|guuucu ga|--CCU-A UCA--GCUUU U-GAUGUUA- 1141 GG(-GUAUUG G)CCU-AACA U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGA-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGGAAU)AGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-A( ---aag--)A 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAAG- -GCCA(---- --aauuu)UG GU-UU-UGCA A-UUGGAAU- 1501 ------GAUA ----GGAAUU -UAAA--AAC U-----UC-C U-AAA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAACG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauaucaaaa a-aucuaaau uuuauua-aa ucuauuuuuu ucuuau-uuu uuucugcuua 1801 uu-aa---aa ug-uggu-au cuucgg-aua -cccgauuua auuugcauaa agaaaacuau 1861 aggaaaaaaa a-uaugauuu cuuaaauuua aaaagauuuu uuuuaaagau ua-uuuauua 1921 cauauguuuu cuaaauauau gugaugacaa uuuu------ ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AUGCaguua- ---------- ---------- ------aaac 2521 aguuaucugU GUA--U--GA AUACUA-UAG CAUGGAA|UA -GCAGAA-UU -GAACaAGCU 2581 aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- -----aa-uu u--u|guu-c 2821 -uauuuuuuu -ua-uu---- --------uu GGC-UUaGUU A--CGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|UAGU U--------- 3001 --UGGAGGCA UU|--AGUAU UCAGAUG-UU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCUG-GAG- A-CUAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-UA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- GUGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAA|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGUGU-UG GAU-G-A--- ----(----- ---------) aaguguaaaa aauaaaaaau 3481 auuuauuauu caagucccug auuugaacau auaaauauuu uuuagauugc u--------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U C-CU-UCA-G -U-ACCuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGCGAGU AU--UC-GC( --GCAA-)GC 3721 GAG-AAAGUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACUAGU UU[aag-aca 4081 agag-uagga uu-----gac aga(uuaaua g-c)------ ucuuu----- cuu-gauu-u 4141 cuugga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GAU-G-CAUG |GCC|GU-UU UUA|GUUCG- U|GAA(UAUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG AUCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcgg uaaauaugcu auauucauau agaa-aaagg 4381 gaaaacugga aauua----- --auaaguaa uaa-uagaaa aaauuaggau -gcuauauau 4441 --uaauuuau auaaauuccu uuuuuuuuac uaucauuu-- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- -------acu auauuuauuu uuuuguuauc 4621 ucuuuuacua uaugaaugu- ----auuuac uugauug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaaG CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UUG-C -G-U(----- 5041 --GUCUA-)A CGCA-A-GGA AGUU-UGAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGUC|CUU 5221 A-G-A-UGAA CUAG-GCUGC A-CGCGUGCU ACAAU--G-A UAUAU----- ---------- 5281 ---------- -----[auaa cgaguuu--- ---------- -----uaaaa aa---uauau 5341 -uuuuuuaca uauaauaug( -uuua)caua uauuauguaa aaaagauaua a--------- 5401 uuuuccu-uc acu(gaaa-) agugu----a ggcaaucuuu aucaau]--- ---------- 5461 -------AUA UAU-C-G--- UAAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-AAU (-UCAUCAG- )AUUGU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGCA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-AGAUau- 5641 gau-gaau-- ugu-uugga- caag-aaaa- aaca-aaau- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -auu-uug-- 5761 uuuuuu-uuu -gaaa-|aaa -ccguaaaun nn-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Piropl 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS B.bigemi.A 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bigemina. ACCESSION No information KEYWORDS No information. SOURCE Babesia bigemina. ORGANISM Babesia bigemina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X59604 LOCUS BBOSRRNAA 2141 bp ds-DNA INV 14-AUG-1991 DEFINITION B.bigemina gene A small subunit rRNA ACCESSION X59604 KEYWORDS ribosomal RNA gene; small subunit ribosomal RNA. SOURCE Babesia bigemia DNA. ORGANISM Babesia bigemia Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 2141) AUTHORS Reddy,G.R., Chakrabarti,D., Yowell,C.A. and Dame,J.B. TITLE Sequence microheterogeneity of the three small subunit ribosomal RNA genes of Babesia bigemina: Expression in erythrocyte culture JOURNAL Nucleic Acids Res. 19, 3641-3645 (1991) STANDARD full automatic COMMENT *source: strain=Mexico; *source: stage=erythrocytic culture; See also X59604, X56905 & X59607. From EMBL entry BBSRRNAA; dated 09-JUL-1991. FEATURES Location/Qualifiers rRNA 228..1920 /function="Component of small subunit ofribosome" /standard_name="Gene A" /note="The feature marked is the region of Gene Awhich encodes the mature small subunit rRNA." /product="Small subunit ribosomal RNA" /evidence=EXPERIMENTAL BASE COUNT 450 a 466 c 594 g 631 t ORIGIN BASE COUNT 416 a 340 c 440 g 505 t 4202 others ORIGIN 1 |~~~~~~uga auagcAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|guuucu gc|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uuuc)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGAUG -UACA--ACC U-----CA-C C-AGA-GUAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uauuucagcc u-cgcg--uu uuuu-ccc(u uuuguu)ggg ucuuuu---c gcu-ggcuuu 1801 uu-------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ug---- --------ag CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcug c--uuggau- ---------g uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guccucg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-CCU-G -U-G(----- 5041 -cuucaag)C GUGG-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuguccu-gu ccc(gaaa-) gggu-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------GUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS B.bigemi.B 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bigemia gene B. ACCESSION No information KEYWORDS No information. SOURCE Babesia bigemia gene B. ORGANISM Babesia bigemia gene B. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X59605 LOCUS BBOSRRNAB 2141 bp ds-DNA INV 14-AUG-1991 DEFINITION B.bigemina gene B small subunit rRNA ACCESSION X59605 KEYWORDS ribosomal RNA gene; small subunit ribosomal RNA. SOURCE Babesia bigemia DNA. ORGANISM Babesia bigemia Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 2141) AUTHORS Reddy,G.R., Chakrabarti,D., Yowell,C.A. and Dame,J.B. TITLE Sequence microheterogeneity of the three small subunit ribosomal RNA genes of Babesia bigemina: Expression in erythrocyte culture JOURNAL Nucleic Acids Res. 19, 3641-3645 (1991) STANDARD full automatic COMMENT *source: strain=Mexico; *source: stage=erythrocytic culture; See also X59604, X56905 & X59607. From EMBL entry BBSRRNAB; dated 09-JUL-1991. FEATURES Location/Qualifiers rRNA 228..1920 /function="Component of small subunit ofribosome" /standard_name="Gene B" /note="The feature marked is the region of Gene Bwhich encodes the mature small subunit rRNA." /product="Small subunit ribosomal RNA" /evidence=EXPERIMENTAL BASE COUNT 450 a 466 c 594 g 631 t ORIGIN BASE COUNT 416 a 340 c 440 g 505 t 4202 others ORIGIN 1 |~~~~~~uga auagcAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|guuucu gc|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uuuc)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGAUG -UACA--ACC U-----CA-C C-AGA-GUAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uauuucagcc u-cgcg--uu uuuu-ccc(u uuuguu)ggg ucuuuu---c gcu-ggcuuu 1801 uu-------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ug---- --------ag CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcug c--uuggau- ---------g uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guccucg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-CCU-G -U-G(----- 5041 -cuucaag)C GUGG-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuguccu-gu ccc(gaaa-) gggu-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------GUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS B.bigemi.C 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bigemia gene C. ACCESSION No information KEYWORDS No information. SOURCE Babesia bigemia gene C. ORGANISM Babesia bigemia gene C. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X59607 LOCUS BBOSRRNAC 2141 bp ds-DNA INV 14-AUG-1991 DEFINITION B.bigemina gene C small subunit rRNA ACCESSION X59607 KEYWORDS ribosomal RNA gene; small subunit ribosomal RNA. SOURCE Babesia bigemia DNA. ORGANISM Babesia bigemia Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 2141) AUTHORS Reddy,G.R., Chakrabarti,D., Yowell,C.A. and Dame,J.B. TITLE Sequence microheterogeneity of the three small subunit ribosomal RNA genes of Babesia bigemina: Expression in erythrocyte culture JOURNAL Nucleic Acids Res. 19, 3641-3645 (1991) STANDARD full automatic COMMENT *source: strain=Mexico; *source: stage=erythrocytic culture; See also X59604, X56905 & X59607. From EMBL entry BBSRRNAC; dated 09-JUL-1991. FEATURES Location/Qualifiers rRNA 228..1920 /function="Component of small subunit ofribosome" /standard_name="Gene C" /note="The feature marked is the region of Gene Cwhich encodes the mature small subunit rRNA." /product="Small subunit ribosomal RNA" /evidence=EXPERIMENTAL BASE COUNT 451 a 463 c 595 g 632 t ORIGIN BASE COUNT 416 a 340 c 440 g 505 t 4202 others ORIGIN 1 |~~~~~~uga auagcAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|guuucu gc|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uuuc)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGAUG -UACA--ACC U-----CA-C C-AGA-GUAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uauuucagcc u-cgcg--uu uuuu-ccc(u uuuguu)ggg ucuuuu---c gcu-ggcuuu 1801 uu-------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ug---- --------ag CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcug c--uuggau- ---------u gu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guccucg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-CCU-G -U-G(----- 5041 -cuucaag)C GUGG-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuguccu-gu ccc(gaaa-) gggu-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------GUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS B.bovis.B 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bovis subsp. (strain Samford). ACCESSION No information KEYWORDS No information. SOURCE Babesia bovis subsp. (strain Samford). ORGANISM Babesia bovis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87566 LOCUS BBORRNAB 1573 bp ds-DNA INV 24-MAY-1992 DEFINITION Babesia bovis ribosomal RNA gene sequence. ACCESSION M87566 KEYWORDS ribosomal RNA gene. SOURCE Babesia bovis (strain Samford) DNA. ORGANISM Babesia bovis Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1573) AUTHORS Ellis,J., Hefford,C., Baverstock,P. and Johnson,A. TITLE Ribosomal RNA sequence comparison of Babesia and Theileria JOURNAL Mol. Biochem. Parasitol. (1992) In press STANDARD simple staff_entry BASE COUNT 366 a 365 c 419 g 423 t ORIGIN BASE COUNT 366 a 365 c 419 g 423 t 4330 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnUUGU-U 61 UAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac cagcuu---g ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ---ucacuuu 301 g>CUAUGG-A UAACCGC-C( -U-AAUU)GU GUGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auuccauuc -aa|guuu-u ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-CCCG A-|GGCAU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G CGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-G--GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CAAUACGGG- -GC--(---- ---uacu)-- GC-UC-UGUA A-UUGGCAU- 1501 -------GGG ----GCGACC -UUCA--CCC U-----CG-C C-CGA-GUAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uacuuuaugu ---cccg-cc uu---agu-g cuucc--acu uug-----cg gg--ccgccu 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGUuu---- ---------- ---------- ---------- 2521 ---------- CGCC-U--GU AUAAUU-GAG CAUGGAA|UA -ACCUUG-UA -UGACcCcuG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -gua|----- 2821 -cc-guuggu -u-------- --------gg CuuuGG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAC UCGACUG-UC -AGAG(GU-G AAA---)U-C U-UAGA-U-U 3061 UGUCG-AUG- A--GCACG-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------u GAUAC)CG-U -CGUAG|UCC UA--ACC-UU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-u--c g---(----u cacuc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-u c-cg-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 --CAGGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gcgu-aagga uu-----gac agg(uugauu g-u)------ ccuuu----- cuu-gau--c 4141 ucuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAUUUAGucc g--cggucu- ---------c cg-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---uccgc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CAUAGAGG]- --|------- ---------- -ACU-CUG-C -G-G(----- 5041 -ccucaag)C UGCG-G-UGA GGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|U-CC|CUU 5221 A-G-A-UCUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UAGCU----- ---------- 5281 ---------- -----[gccu cgugu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuacccu-cg gcc(gaca-) ggcccu--gg uaac--ccc- --uagu]--- ---------- 5461 -------CUG CAU-C-G--- UGUU-A-GGG AUUGAUCUU( UGCAAUUC)U AGAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUA-G- 5581 U-CCCUGCCC UU|UGUA-CA CACCGC-CGU CGCUCC-U-A CC-CAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- accu-gccu- gc-g-cg--- ---------- ---------- 5701 -------(uc gu----)--- ---------- ---------- ---------- ---c-gcc-- 5761 gcucgc-ggg -ccaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GA-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS B.bovis.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bovis (BBOV2). ACCESSION No information KEYWORDS No information. SOURCE Babesia bovis (BBOV2). ORGANISM Babesia bovis (BBOV2). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19077 LOCUS BBORR18S 1653 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Babesia bovis (BBOV2) 18S ribosomal RNA. ACCESSION L19077 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Babesia bovis (individual_isolate S, strain vaccine) piroplasm rRNA. ORGANISM Babesia bovis Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1653) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1653 /product="18S ribosomal RNA" /gene="18S rRNA" /label=srRNA-A /note="putative" source 1..1653 /organism="Babesia bovis" /isolate="S" /strain="vaccine" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 377 a 387 c 444 g 444 t 1 others ORIGIN BASE COUNT 377 a 387 c 444 g 444 t 4251 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac cagcuu---g ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ---ucacuuu 301 g>CUAUGG-A UAACCGCAC( -U-AAUU)GU GUGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auuccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-CCCG A-|GGCAU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-nGCC(U-G CGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CAAUACGGG- -GC--(---- ---uacu)-- GC-UC-UGUA A-UUGGCAU- 1501 ------GGGG ----GCGACC -UUCA--CCC U-----CG-C C-CGA-GUAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aaucucacgu ---ccc--cc gcuu-ggu-c cuuu---ccu cgcc-----g gg--acgccu 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGUuu---- ---------- ---------- ---------- 2521 ---------- CGCC-U--GU AUAAUU-GAG CAUGGAA|UA -ACCUUG-UA -UGACcC-uG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -gua|----- 2821 -cc-guuggu -u-------- --------gg CuuuGG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAC UCGACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUCG-AUG- A-CGCACG-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-UU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-u--c gucg(----- ccu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cg-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gcgu-aagga uu-----gac agg(uugauu g-u)------ ccuuu----- cuu-gauu-c 4141 ucuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GGACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAUUUAGucg c--u-cgg-- -------ucu cugu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ----ccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CAUAGAGG]- --|------- ---------- GACU-CUG-C -G-G(----- 5041 -cgucaag)C UGCG-G-UGA GGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCUU----- ---------- 5281 ---------- -----[gccu cgugu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuacccu-cg gcc(gaua-) ggcccu--gg -uaac-ccc- --uagu]--- ---------- 5461 -------CUG CAU-C-G--- UGUU-U-GGG AUUGAUCUU( UGCAAUUC)U AGAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- accu-gcuu- gc-g-cga-- ---------- ---------- 5701 -------(uc cg----)--- ---------- ---------- ---------- --uc-gcc-- 5761 gcucgc-ggg -ccaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.bovis.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia bovis (BBOV3). ACCESSION No information KEYWORDS No information. SOURCE Babesia bovis (BBOV3). ORGANISM Babesia bovis (BBOV3). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19078 LOCUS BBORR18SA 1651 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Babesia bovis (BBOV3) 18S ribosoma RNA. ACCESSION L19078 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Babesia bovis (individual_isolate S, strain vaccine) piroplasm rRNA. ORGANISM Babesia bovis Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1651) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1651 /product="18S ribosomal RNA" /gene="18S rRNA" /label=srRNA-B /note="putative" source 1..1651 /organism="Babesia bovis" /isolate="S" /strain="vaccine" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 381 a 385 c 442 g 442 t 1 others ORIGIN BASE COUNT 381 a 385 c 442 g 442 t 4253 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac cagcuu---g ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 gagu<----- ---------- ---------- ---------- ---------- ---ucacuuu 301 g>CUAUGG-A UAACCGCGC( -U-AAUU)GU GUGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auuccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-CCCG A-|GGCAU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G CGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CAAUACGGG- -GC--(---- ---uacu)-- GC-UC-UGUA A-UUGGCAU- 1501 ------GGGG ----GCGACC -UUCA--CCC U-----CG-C C-CGA-GUAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aaucucacgu ---ccgc-cc ua---gug-u uuuc---cac uac-----gc gg--acgccu 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGUuu---- ---------- ---------- ---------- 2521 ---------- CGCC-U--GU AUAAUU-GAG CAUGGAA|UA -ACCUnG-UA -UGACcC-uG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -gua|----- 2821 -cc-guuggu -u-------- --------gg CuuuGG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAC UCGACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUCG-AUG- A-CGCACG-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---CUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-UU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-u--c gucg(----- ccu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cg-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 gcgu-aagga uu-----gac agg(uugauu g-u)------ ccuuu----- cuu-gauu-c 4141 ucuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAUUUAGucg c--u-cgg-- -------ucu cugu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ----ccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgca- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CAUAGAGG]- --|------- ---------- GACU-CUG-C -G-G(----- 5041 -cgucaag)C UGCG-G-UGA GGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCUU----- ---------- 5281 ---------- -----[gccu cgugu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuacccu-cg gcc(gaua-) -gcccu--gg uaac--ccc- --uagu]--- ---------- 5461 -------CUG CAU-C-G--- UGUU-U-GGG AUUGAUCUU( UGCAAUUC)U AGAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- accu-gccu- gc-g-cga-- ---------- ---------- 5701 -------(uc cg----)--- ---------- ---------- ---------- --uc-gcc-- 5761 gcucgc-ggg -ccaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.caballi 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia caballi. ACCESSION No information KEYWORDS No information. SOURCE Babesia caballi. ORGANISM Babesia caballi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z15104 ID BC18SRRN standard; DNA; INV; 1694 BP. XX AC Z15104; XX DT 14-SEP-1992 (Rel. 33, Created) #- DT 14-SEP-1992 (Rel. 33, Last updated, Version 1) XX DE B.caballi gene for 18S ribosomal RNA. XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Babesia caballi OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Piroplasmia; Piroplasmida; Babesiidae. XX RN [1] RP 1-1694 RA Allsopp M.T., Cavalier-Smith T., de Waal T., Allsopp B.A.; RT "Origin of Theileria from Nicollia and a split from Babesia very RT early in piroplasm evolution."; RL Unpublished. XX RN [2] RP 1-1694 RA Allsopp B.A.; RT ; RL Submitted (14-SEP-1992) on tape to the EMBL Data Library by: RL Allsopp B. A., Onderstepoort Veterinary Institute, Molecular RL Biology, Onderstepoort, South Africa, 0110 XX CC *source: stage=Piroplasm; CC *source: tissue=Host blood (equine); CC *source: isolate=Kaalplaas; XX FH Key Location/Qualifiers FH FT rRNA 1..1694 FT /product= "18S ribosomal RNA" /citation= ([1]) XX SQ Sequence 1694 BP; 421 A; 329 C; 432 G; 512 T; 0 other; BASE COUNT 421 a 329 c 432 g 512 t 4209 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CUAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggcccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uaau)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GCGACU -UAAA--CCC U-----CG-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcg u-ugcgu-ug uucu-ugc-u uuuu---gcu ugauuu--uc gcuucgcuuu 1801 uu-gu----- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-AU-CG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -ACAUAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gg---- --------ga CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--cg|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuuucu--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 gagg-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcuu c--ccuuuu- ---------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuuggg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUA-C -A-G(----- 5041 -cgacaag)C UGUA-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucac uaagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-gc ucc(gaaa-) ggug-u--gg guaau-cug- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uug -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.canis 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia canis. ACCESSION No information KEYWORDS No information. SOURCE Babesia canis. ORGANISM Babesia canis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19079 LOCUS BBORR18SC 1711 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Babesia canis 18S ribosomal RNA. ACCESSION L19079 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Babesia canis piroplasm rRNA. ORGANISM Babesia canis Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1711) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1711 /product="18S ribosomal RNA" /gene="18S rRNA" /note="putative" source 1..1711 /organism="Babesia canis" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 423 a 334 c 455 g 498 t 1 others ORIGIN BASE COUNT 423 a 334 c 455 g 498 t 4193 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucuuuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACACG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uaau)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACU -UAAA--CCC U-----CA-C C-AGA-GUAG C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 uauuuuugcu u--ggcgguu uguu-gcc-u uugu---ggc uugauu-ccg cu-uggcuuu 1801 ug-gc---uu uu-ugcc-u- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UAUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUG-UAG CAUGGAA|UA -AUAGAG-UA -GGACuUuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ggg--- --------aa CCuuGG-GUA A--UGGUUAn UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gugau-ug gag-g-u--c gucg(----- uuuguu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-c c-cu-uca-g -g-agcuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aacgguagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcgc u--ggu-uac ---------u ug-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --guuucc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cgcug- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-G -G-G(----- 5041 -cuugaag)C UCCA-A-GGA AGAU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------g 5401 uugcccc-ug gcc(gaga-) gguc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAC-G-GGG AUUGAUUUU( UGUAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- auuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-gug -gaaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.diverg.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia divergens. ACCESSION No information KEYWORDS No information. SOURCE Babesia divergens. ORGANISM Babesia divergens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U16370 LOCUS BDU16370 1724 bp ds-DNA INV 15-NOV-1994 DEFINITION Babesia divergens 18S rRNA gene, complete sequence. ACCESSION U16370 KEYWORDS . SOURCE Babesia divergens. ORGANISM Babesia divergens Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexans; Piroplasmids; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1724) AUTHORS Holman,P.J. TITLE Comparative Study of Cervid Babesia Isolates JOURNAL Thesis (1994) Veterinary Pathobiology, Texas A&M University STANDARD full automatic REFERENCE 2 (bases 1 to 1724) AUTHORS Holman,P.J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1994) Patricia Holman, Texas A&M University, Veterinary Pathobiology, College Station, TX 77843, USA STANDARD full automatic COMMENT NCBI gi: 571462 FEATURES Location/Qualifiers source 1..1724 /lab_host="Meriones unquiculatus" /organism="Babesia divergens" /specific_host="Bos taurus" /dev_stage="piroplasm" rRNA 1..1724 /product="18S rRNA" BASE COUNT 446 a 341 c 437 g 500 t ORIGIN BASE COUNT 446 a 341 c 437 g 500 t 4179 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aaacuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---aauu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACC -UAAA--CCC U-----CA-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuuuugcg u--gguguua auauugac-u aau----guc gagauu-gca cu-ucgcuuu 1801 ug-gg---au uu-aucc-cu ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACuuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gug--- --------aa CCu-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(---au uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 augu-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUag-u- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gucc--g--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaaa agguucgucc guuacgguuu 4801 gcu------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -cucuaag)C CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 uuauccc-uu ccc(gaaa-) gggc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcc- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggc-- 5761 uuggcc-uag -ggaa-|guc -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.diverg.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia divergens. ACCESSION No information KEYWORDS No information. SOURCE Babesia divergens. ORGANISM Babesia divergens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U07885 LOCUS U07885 1671 bp DNA INV 07-DEC-1994 DEFINITION Babesia divergens small subunit rRNA gene. ACCESSION U07885 KEYWORDS . SOURCE Babesia divergens. ORGANISM Babesia divergens Eucaryotae; Protozoa; Apicomplexa; Sporozoa; Coccidia; Piroplasmida. REFERENCE 1 (bases 1 to 1671) AUTHORS Mackenstedt,U., Luton,K., Baverstock,P. and Johnson,A. TITLE Phylogenetic relationships of Babesia species as determined from comparison of small subunit ribosomal RNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1671) AUTHORS Luton,K. TITLE Direct Submission JOURNAL Submitted (22-MAR-1994) Kim Luton, Microbiology, University of Technology, Sydney, Westbourne St, Gore Hill, Sydney, N.S.W., 2065, Australia STANDARD full automatic COMMENT NCBI gi: 595285 FEATURES Location/Qualifiers source 1..1671 /lab_host="Meriones unguiculatus" /organism="Babesia divergens" /specific_host="Bos taurus" /dev_stage="merozoites" rRNA 1..1671 /product="small subunit rRNA" BASE COUNT 434 a 327 c 420 g 490 t ORIGIN BASE COUNT 434 a 327 c 420 g 490 t 4232 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~UUA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aaacuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---aauu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACC -UAAA--CCC U-----CA-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuuuugcg u--gguguua auauugac-u aau----guc gagauu-gca cu-ucgcuuu 1801 ug-gg---au uu-aucc-cu ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACuuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gug--- --------aa CCu-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(---au uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 caug-GCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 augu-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUag-u- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gucc--g--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaaa agguucgucc guuacgguuu 4801 gcu------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -cucuaag)C CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 uuauccc-uu ccc(gaaa-) --gc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGACuG-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcc- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggc-- 5761 uuggcc-uag -ggaa-|guc -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG -U~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.diverg.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia divergens. ACCESSION No information KEYWORDS No information. SOURCE Babesia divergens. ORGANISM Babesia divergens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z48751 LOCUS BDRRNA18S 1726 bp DNA INV 21-MAR-1995 DEFINITION B.divergens gene for 18S ribosomal RNA. ACCESSION Z48751 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Babesia divergens. ORGANISM Babesia divergens Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Babesiidae. REFERENCE 1 (bases 1 to 1726) AUTHORS Skuce,P.J., Mallon,T.R. and Taylor,S.M. TITLE Babesia divergens 18S rRNA, complete sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1726) AUTHORS Skuce,P.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-1995) to the EMBL/GenBank/DDBJ databases. Skuce P. J., Department of Agriculture for Northern Ireland, Veterinary Sciences Division, Stoney Road, Stormont, Belfast, Northern Ireland, UK, BT4 3SD COMMENT NCBI gi: 732566 FEATURES Location/Qualifiers source 1..1726 /organism="Babesia divergens" /strain="Drumaness" rRNA 1..1726 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 450 a 340 c 452 g 484 t ORIGIN BASE COUNT 450 a 340 c 452 g 484 t 4177 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aaacuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucgcuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---aauu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACC -UAAA--CCC U-----CA-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CGCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuuguugg g-ugguguua auauugac-u aau----guc gagauu-gca cu-ucgcuug 1801 gg-gg---au uu-agcc-cu ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU AG-AGAA--A 2461 AUUAGAGUGU CU-CA-AG-G AGACuugu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACuuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gug--- --------aa CCu-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggaa-ug gag-g-u--c guc-(----a uuuucc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCCA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 augu-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- ACgGAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUag-u- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gucc--g--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaaaa agguucgucc guuacgguuu 4801 gcu------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -cucuaag)C CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 uuauccc-uu ccc(gaaa-) gggc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGG-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaaa-- aaa-acggg- ccgu-ggcc- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggc-- 5761 uuggcc-uag -ggaa-|guc -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --U~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.equi 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia equi. ACCESSION No information KEYWORDS No information. SOURCE Babesia equi. ORGANISM Babesia equi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z15105 ID BE18SRRN standard; DNA; INV; 1748 BP. XX AC Z15105; XX DT 14-SEP-1992 (Rel. 33, Created) DT 14-SEP-1992 (Rel. 33, Last updated, Version 1) XX DE B.equi gene encoding 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Babesia equi OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Piroplasmia; Piroplasmida; Babesiidae. XX RN [1] RP 1-1748 RA Allsopp M.T., Cavalier-Smith T., de Waal T., Allsopp B.A.; RT "Origin of Theileria from Nicollia and a split from Babesia very RT early in piroplasm evolution."; RL Unpublished. XX RN [2] RP 1-1748 RA Allsopp B.A.; RT ; RL Submitted (14-SEP-1992) on tape to the EMBL Data Library by: RL Allsopp B. A., Onderstepoort Veterinary Institute, Molecular RL Biology, Onderstepoort, South Africa, 0110 XX CC *source: stage=Piroplasm; CC *source: tissue=Host blood (equine); CC *source: isolate=OP1; XX FH Key Location/Qualifiers FH FT rRNA 1..1748 FT /product= "18S ribosomal RNA" /citation= ([1]) XX SQ Sequence 1748 BP; 444 A; 331 C; 463 G; 509 T; 1 other; BASE COUNT 444 a 331 c 463 g 509 t 4156 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCrUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--uu ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---uuguuuc 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAA-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -GCu-(---- ---uga-)-a GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUC -UAAA--CCC c-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-uuucguug acugcgcuug gcguuuguca ucguug-c-- ----ggcuug 1801 gu-ug---gg uu-ucga-uu auucguuucc cggc------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-GA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUU-UAG CAUGGAA|UA -ACAGAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|---uu 2821 -uu-guuggu -uu-uagg-- --------ag CCA-GA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUGACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUCA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c guc-(----a guuugaac-) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 gagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu g--ugagac- ---------u ug-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuucau--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuccg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -ucauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucac ugagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 guauccu-ug gcu(gaga-) ggcu-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUUGAUUAU( UGUAAUUC)U UAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- cugu-gaug- uuuc-cuu-- ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- --uu-gga-- 5761 gacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAA GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.microt.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia microti. ACCESSION No information KEYWORDS No information. SOURCE Babesia microti. ORGANISM Babesia microti. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: S42454 M93660 LOCUS S110860 514 bp DNA NLM 30-OCT-1992 DEFINITION small subunit rRNA [Babesia microti, Genomic, 514 nt] ACCESSION S42454 M93660 KEYWORDS . SOURCE Babesia microti ORGANISM Babesia microti Unclassified. REFERENCE 1 (bases 1 to 514) AUTHORS Persing,D.H., Mathiesen,D., Marshall,W.F., Telford,S.R., Spielman,A., Thomford,J.W. and Conrad,P.A. TITLE Detection of Babesia microti by polymerase chain reaction. JOURNAL J. Clin. Microbiol. 30, 2097-2103 (1992) STANDARD full automatic COMMENT This entry incorporates information provided by the National Library of Medicine's GenInfo Backbone as NCBI gibbsq 110860. This sequence comes from Fig. 1. FEATURES Location/Qualifiers rRNA 1..514 /note="Description: small subunit rRNA" BASE COUNT 143 a 98 c 134 g 139 t ORIGIN BASE COUNT 143 a 98 c 134 g 139 t 5389 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-UA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--uu ---------- -auac-agc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCGA-C GAC|GGGU-G A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCu-(---- ----uaa)-a GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUC -UAAA--CCC U-----UC-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|-~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (-~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.microt.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia microti. ACCESSION No information KEYWORDS No information. SOURCE Babesia microti. ORGANISM Babesia microti. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09833 LOCUS BMU09833 1763 bp rRNA INV 06-JUN-1994 DEFINITION Babesia microti 16S-like small-subunit rRNA. ACCESSION U09833 KEYWORDS . SOURCE Babesia microti ORGANISM Babesia microti Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexa; Piroplasmids; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1763) AUTHORS Allsopp,M.T. TITLE Phylogeny of Babesia, Theileria and related parasites and development of species-specific probes for diagnostic purposes JOURNAL Thesis (1994) Molecular Biology, Onderstepoort Veterinary Institute STANDARD full automatic REFERENCE 2 (bases 1 to 1763) AUTHORS Allsopp,M.T. TITLE Direct Submission JOURNAL Submitted (18-MAY-1994) Maria T. Allsopp, Onderstepoort Veterinary Institute, Molecular Biology, Onderstepoort, 0110, South Africa STANDARD full automatic COMMENT NCBI gi: 497258 FEATURES Location/Qualifiers rRNA 1..1763 /product="16S-like rRNA" /note="small-subunit ribosomal RNA" source 1..1763 /lab_host="Mus musculus" /organism="Babesia microti" /isolate="Ruebush-Peabody (non-lethal)" /dev_stage="piroplasm" /note="from host blood (murine)" BASE COUNT 461 a 345 c 454 g 503 t ORIGIN BASE COUNT 461 a 345 c 454 g 503 t 4140 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-UA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--uu ---------- -auac-agc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCGA-C GAC|GGGU-G A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCu-(---- ----uaa)-a GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUC -UAAA--CCC U-----UC-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AGAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugc- -----c---- ---------- ---------- -uuguc-a-u ---------- 1801 ---------- -----ua-a- ucucgc-u-- -uc------- --cgag---- -c-------- 1861 guuuuuuuau u--gacuugg cauc--uucu ggauuuggug cc-uucgggu acuau----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------uuuc cagg------ ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUU UG-AGAA--A 2461 ACUAGAGUGU UU-CA-AA-C AGGCauuc-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUA-CAG CAUGGAA|UA -AUGAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -ua-uug--- --------ag CCA-GA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c guc-(----a guuuaaac-) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG UC[cag-aca 4081 uaga-gagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUuagga ---ucuggga caagcu---u ugcu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuccagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----auc-gc u--------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 -ucauaaa)A CGCA-A-GGA AGUG-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-ug gcc(gucg-) gguc-c--gg guaau-cuu- -acagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -CGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccaa-gaaa- cgu--gga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-cuu-- 5761 cguuuu-uug -gaaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.odocoile 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia odocoilei. ACCESSION No information KEYWORDS No information. SOURCE Babesia odocoilei. ORGANISM Babesia odocoilei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U16369 LOCUS BOU16369 1723 bp ds-DNA INV 15-NOV-1994 DEFINITION Babesia odocoilei 18S rRNA gene, complete sequence. ACCESSION U16369 KEYWORDS . SOURCE Babesia odocoilei. ORGANISM Babesia odocoilei Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexans; Piroplasmids; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1722) AUTHORS Holman,P.J. TITLE Comparative Study of Cervid Babesia Isolates JOURNAL Thesis (1994) Veterinary Pathobiology, Texas A&M University STANDARD full automatic REFERENCE 2 (bases 1 to 1723) AUTHORS Holman,P.J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1994) Patricia Holman, Texas A&M University, Veterinary Pathobiology, College Station, TX 77843, USA STANDARD full automatic COMMENT NCBI gi: 571461 FEATURES Location/Qualifiers source 1..1723 /lab_host="Cervus elaphus canadensis" /organism="Babesia odocoilei" /specific_host="Odocoileus virginianus" rRNA 1..1723 /product="18S rRNA" BASE COUNT 440 a 345 c 440 g 498 t ORIGIN BASE COUNT 440 a 345 c 440 g 498 t 4180 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UugCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aaacuu---u ---------- -uuac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ucuuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>CCAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---aauu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACC -UAAA--CCC U-----CA-C C-AGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcg u-caccguau uuu------- -----ga--- ---cuu-uug ucgacugucg 1801 gu-uu----- --------c- --gcuu---- -uugggauuu aucccu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGACuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-CAG CAUGGAA|UA -AUAGAG-UA -GGACuuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-gug--- --------aa CCu-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuuucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 augu-uagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUag-ug cccgug-aga ag-------g uuc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gucc--g--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uua-- cggguugcu- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -cucuaag)C CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 uuauccc-ug ccc(gaaa-) gggc-u--gg guaau-cuu- --uagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGA-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guc -ucgugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.rodhaini 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia rodhaini. ACCESSION No information KEYWORDS No information. SOURCE Babesia rodhaini. ORGANISM Babesia rodhaini. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87565 LOCUS BBORRNAA 1684 bp DNA INV 13-NOV-1992 DEFINITION Babesia rodhaini ribosomal RNA gene sequence. ACCESSION M87565 NID g155922 KEYWORDS ribosomal RNA gene. SOURCE Babesia rodhaini merozoite DNA. ORGANISM Babesia rodhaini Eukaryotae; mitochondrial eukaryotes; Alveolata; Apicomplexa; Piroplasmida; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1684) AUTHORS Ellis,J., Hefford,C., Baverstock,P., Dalrymple,B.P. and Johnson,A. TITLE Ribosomal RNA sequence comparison of Babesia and Theileria JOURNAL Mol. Biochem. Parasitol. 54, 87-96 (1992) MEDLINE 92389993 BASE COUNT 460 a 323 c 418 g 483 t BASE COUNT 460 a 323 c 418 g 483 t 4219 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--uu ---------- -auac-agc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ----uuuuau 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCGA-C GAC|GGGU-A A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCu-(---- ----caa)-a GC-UU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUC -UAAA--CCC U-----UC-C C-AGC-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AGAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcc u-cgucguuu augcucgcuu ccaagcguuu guaauu-gac uuggcaucuu 1801 ug-ug---ga uu-agug-cg caagcauuuu uccacu---- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUU UG-AGAA--A 2461 ACUAGAGUGU UU-CA-AA-C AGCAauu--- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUA-CAG CAUGGAA|UA -AUAAAG-UA -GGACuuUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-uug--- --------ag CCA-uA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c guc-(----a guuuaaac-) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 --CAGGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG UC[cag-aca 4081 uaga-aauga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAauuagga u--augggac u-------ac auuu-c---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------ag ucuc--au-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaucg- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 --------uc uUgAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 -ucauaaa)A CGCA-A-GGA AGUG-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|U-CC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uu-uccu-ug gcc(ggaa-) gucc----gg guaau-cuu- -acagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -C-ACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- cuga-agaa- c-uu-aga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-uaa-- 5761 aguuuu-uug -g-aa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Babesia.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Babesia sp.. ACCESSION No information KEYWORDS No information. SOURCE Babesia sp. ORGANISM Babesia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09834 LOCUS BSU09834 1700 bp rRNA INV 06-JUN-1994 DEFINITION Babesia sp. 16S-like small-subunit rRNA. ACCESSION U09834 KEYWORDS . SOURCE Babesia sp. ORGANISM Babesia sp. Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexa; Piroplasmids; Babesiidae; Babesia. REFERENCE 1 (bases 1 to 1630) AUTHORS Allsopp,M.T. TITLE Phylogeny of Babesia, Theileria and related parasites and development of species-specific probes for diagnostic purposes JOURNAL Thesis (1994) Molecular Biology, Onderstepoort Veterinary Institute STANDARD full automatic REFERENCE 2 (bases 1 to 1700) AUTHORS Allsopp,M.T. TITLE Direct Submission JOURNAL Submitted (18-MAY-1994) Maria T. Allsopp, Onderstepoort Veterinary Institute, Molecular Biology, Onderstepoort, 0110, South Africa STANDARD full automatic COMMENT NCBI gi: 497259 FEATURES Location/Qualifiers rRNA 1..1700 /product="16S-like rRNA" /note="small-subunit ribosomal RNA" source 1..1700 /organism="Babesia sp." /specific_host="Bos taurus" /isolate="field isolate" /dev_stage="piroplasm" /note="from host blood (bovine)" BASE COUNT 427 a 345 c 435 g 493 t ORIGIN BASE COUNT 427 a 345 c 435 g 492 t 4204 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------ac aagcuu--uu ---------- --uac-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 guau<----- ---------- ---------- ---------- ---------- ----ucguuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggcccauuc -aa|guuucu ga|--CCC-A UCA--GCUU- --GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG A-|GGCAG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 -----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GC--(---- ---uacu)-- GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GUGACU -UAAA--CCC U-----CA-C C-AGA-GUAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucagcg u-uucgcgug ugccucuuuu ggcccaucuc gucucg-cuu uuuu------ 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UAUUACUU UG-AGAA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GUCU-U--GA AUACUU-GAG CAUGGAA|UA -AUAGAG-UA -GGACcuuGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cua|--uuu 2821 --u-guuggu -uu-ugu--- --------ua CCu-uG-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-u--c guc-(----a uuuuucc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG UC[cag-aca 4081 agga-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAuuuagcuu ucguuacuug gu-------u cgcu-aagc- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u----- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-CUG-C -G-G(----- 5041 -cuucaag)U CGCA-G-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[gcau cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuauccu-gc ucc(gaaa-) ggug-c--gg guaac-cau- --uagu]--- ---------- 5461 -------CUG CAU-C-G--- UGUC-G-GGG AUUGAUUUU( UGCAAUUC)U AAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-ggcu- uuuc-cga-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uc-ggu-- 5761 uuugcc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cyt.felis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19080 LOCUS CXZRR18S 1774 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Cytauxzoon felis 18S ribosomal RNA. ACCESSION L19080 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Cytauxzoon felis (individual_isolate stabilate 153) piroplasm rRNA. ORGANISM Cytauxzoon felis Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 1774) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1774 /product="18S ribosomal RNA" /gene="18S rRNA" /note="putative" source 1..1774 /organism="Cytauxzoon felis" /isolate="stabilate 153" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 485 a 320 c 442 g 525 t 2 others ORIGIN BASE COUNT 485 a 320 c 442 g 525 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagn- uau-aauu-- ----uauuug 241 auau<----- ---------- ---------- ---------- ---------- ---ucguuuc 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAG-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-A( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGAG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GACG ----GAAAUU -UAAG--CUC U-----UU-C C-GGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--ACU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-ca-----u ca--uu---- ---------- ----ua-uau ---------- 1801 ---------- -----uc-c- ---uua-auc -gguu---ua --uuua-ugu ug-------- 1861 uggcuuuuuc u-ggugauua -uauuucggu augau--uau cca------- g--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------auu- --guua---c u-----uuga g------a-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -aaa------ ---------- 2221 ---uuagagu gcuuaaagca ggcuuuug-- ---ccuugaa uacuuuagca ugg-a----- 2281 ---------- ---------- ---------- ---------- --------au a--ac----- 2341 --ua--agua gg-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --------ac ---------- 2461 ---------- -----uuugg uu--c----- ---------- ---------- ---------- 2521 ---------- ---------u auuu------ ---------- -----ugu-- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---ugguu-u aagagccaaa -gu---aaug 2761 auua--a--- ---------- ---------- ---------- ---------- ---------u 2821 -a-------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uugaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-accuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 gagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[ccu-gc uaaaua---- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---ggaucu- -gagaau--a 4441 --aacu---- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -uuauguu-- gucuca-g-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----caucgc u--------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u cuuagagg]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucau cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggcuu----g gguaaucuuu ---agu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUUGAUUAU( UGCAAUUA)U UAAUCAUG-A 5521 ACGAGG-AAU G--CCUAGUA GA-CGC-GAG (-UCAUCAG- )CUCGU-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAN--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- cugu-ggug- aauc-uaa-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --uu-aga-- 5761 uacgcc-aug -gaaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GGAGAA--G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.annulata 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria annulata. ACCESSION No information KEYWORDS No information. SOURCE Theileria annulata. ORGANISM Theileria annulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M64243 M34845 LOCUS THERR16S 1744 bp ds-DNA INV 18-APR-1991 DEFINITION Theileria annulata 16S-like ribosomal RNA (16S rRNA) gene sequence. ACCESSION M64243 M34845 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Theileria annulata DNA. ORGANISM Theileria annulata Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1744) AUTHORS Gajadhar,A.A., Marquardt,W.C., Hall,R., Gunderson,J., Ariztia-Carmona,E.V. and Sogin,M.L. TITLE Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates JOURNAL Mol. Biochem. Parasitol. 45, 147-154 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1744 /product="16S-like ribosomal RNA" /gene="16S rRNA" BASE COUNT 459 a 330 c 456 g 498 t 1 others ORIGIN BASE COUNT 459 a 330 c 456 g 498 t 4160 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuc 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAA-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauu-gcu ----ug--u- gu-cccucug gggucu-gug ---------- 1801 ---------- ------c-a- uguggc-u-- -uuuuucgga cggagu---- ---------- 1861 ---------- ---------- ---------u ucuuugucug aau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuc-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|--auu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G ArA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu a--cgggaau aagu-----u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------ac ugucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccu----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUG)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(gu ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS T.buffeli 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria buffeli. ACCESSION No information KEYWORDS No information. SOURCE Theileria buffeli. ORGANISM Theileria buffeli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z15106 ID TB18SRRN standard; DNA; INV; 1740 BP. XX AC Z15106; XX DT 14-SEP-1992 (Rel. 33, Created) DT 14-SEP-1992 (Rel. 33, Last updated, Version 1) XX DE T.buffeli gene encoding 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Theileria buffeli OC Eukaryota; Animalia; Protozoa; Microspora; Microsporea; OC Piroplasmia; Piroplasmida; Theileriidae. XX RN [1] RP 1-1740 RA Allsopp M.T., Cavalier-Smith T., de Waal T., Allsopp B.A.; RT "Origin of Theileria from Nicollia and a split from Babesia very RT early in piroplasm evolution."; RL Unpublished. XX RN [2] RP 1-1740 RA Allsopp B.A.; RT ; RL Submitted (14-SEP-1992) on tape to the EMBL Data Library by: RL Allsopp B. A., Onderstepoort Veterinary Institute, Molecular RL Biology, Onderstepoort, South Africa, 0110 XX CC *source: stage=Piroplasm; CC *source: tissue=Host blood (bovine); CC *source: isolate=Marula; XX FH Key Location/Qualifiers FH FT rRNA 1..1740 FT /product="18S ribosomal RNA" /citation= ([1]) XX SQ Sequence 1740 BP; 457 A; 324 C; 445 G; 514 T; 0 other; BASE COUNT 457 a 324 c 445 g 514 t 4163 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAG-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-U GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauuucau uucucuuucu gaguuuguuu uugcgg-cuu auuucgguuu 1801 ga-uu---uu uu-cuuu-cc ggau------ ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GAUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-uauu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGgau g--cgggaau agac-----u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu ugucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUA)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(gu ua----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.parva.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria parva. ACCESSION No information KEYWORDS No information. SOURCE Theileria parva. ORGANISM Theileria parva. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L02366 LOCUS THE18SRRNA 1742 bp ds-DNA INV 19-SEP-1992 DEFINITION Theileria parva 18S ribosomal RNA (18S rRNA) gene. ACCESSION L02366 KEYWORDS 18S ribosomal RNA; small subunit ribosomal RNA. SOURCE Theileria parva piroplasm DNA. ORGANISM Theileria parva Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Piroplasmia; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1742) AUTHORS Allsopp,B.A., Baylis,H.A., Allsopp,M.T., Cavalier-Smith,T., Bishop,R.P., Carrington,M., Sohanpal,B. and Spooner,P. TITLE Discrimination between six species of Theileria by oligonucleotide probes which detect small subunit ribosomal RNA sequences JOURNAL Unpublished (1992) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1742 /standard_name="small subunit (18S) ribosomal RNA" /product="18S ribosomal RNA" /gene="18S rRNA" /note="putative" /citation=[1] BASE COUNT 459 a 334 c 458 g 491 t ORIGIN BASE COUNT 459 a 334 c 458 g 491 t 4161 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAA-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauc-gcu ----ug--u- gu-cccuucg gggucu-cug ---------- 1801 ---------- ------c-a- uguggc-u-- -uauuucgga cggagu---- ---------- 1861 ---------- ---------- --------uc gcuuugucug gau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|--auu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACAAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu a--cgggaau aagc-----u cuc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc ugucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----caucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUG)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(ga ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.parva.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria parva (clone pTpmr5.7). ACCESSION No information KEYWORDS No information. SOURCE Theileria parva (clone pTpmr5.7). ORGANISM Theileria parva (clone pTpmr5.7). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L28999 LOCUS THERGD 1805 bp ds-DNA INV 23-FEB-1994 DEFINITION Theileria parva (clone pTpmr5.7) 16S ribosmal RNA (16S rRNA) gene, 3' end. ACCESSION L28999 KEYWORDS 16S ribosomal RNA. SOURCE Theileria parva (individual_isolate Muguga, sub_species parva) (library: lambda gt11) DNA. ORGANISM Theileria parva Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1805) AUTHORS Kibe,M.M., Ole-Moiyoi,O.K., Nene,V.V., Khan,B.B., Allsopp,B.A., Collins,N.E., Morzaria,S.P., Gobright,E.I. and Bishop,R.P. TITLE Organization of Theileria parva ribosomal RNA genes: Evidence for two polymorphic units JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 456437 FEATURES Location/Qualifiers rRNA <1..1670 /function="translation of mRNA" /standard_name="SSU rRNA" /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" source 1..1805 /organism="Theileria parva" /isolate="Muguga" /sub_species="parva" /germline /sequenced_mol="DNA" /tissue_lib="lambda gt11" BASE COUNT 476 a 350 c 466 g 513 t ORIGIN BASE COUNT 440 a 321 c 444 g 469 t 4229 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ ~~~~[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~uu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAA-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauc-gcu ----ug--ug u--cccuucg gggucu-cug ---------- 1801 ---------- ------c-a- uguggc-u-- -uauuucgga cggagu---- ---------- 1861 ---------- ---------- --------uc gcuuugucug gau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|--auu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACAAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu a--cgggaau aagc-----u cuc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc ugucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----caucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUG)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(ga ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --UUC----- -------~|| ||| // LOCUS T.taurotra 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria taurotragi. ACCESSION No information KEYWORDS No information. SOURCE Theileria taurotragi. ORGANISM Theileria taurotragi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19082 LOCUS THERR18SA 1737 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Theileria taurotragi 18S ribosomal RNA. ACCESSION L19082 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Theileria taurotragi (strain Vaalwater) piroplasm rRNA. ORGANISM Theileria taurotragi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1737) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1737 /product="18S ribosomal RNA" /gene="18S rRNA" /label=srRNA /note="putative" source 1..1737 /organism="Theileria taurotragi" /strain="Vaalwater" /dev_stage="piroplasm" /sequenced_mol="rRNA" BASE COUNT 452 a 337 c 464 g 484 t ORIGIN BASE COUNT 452 a 337 c 464 g 484 t 4166 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuu 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAG-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-A GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuucugcu g-cauu-gu- --------cg ag-ucccucc gggguc-uug ---------- 1801 ---------- -----gc-a- cguggc-u-- -uuuuucgga cgguuc-gc- ---------- 1861 ---------- ---------- ---------- ----ugucug gau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|--auu 2821 -uu-guuggu -uu-ua---- --gg----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACAAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uca-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu a--cgggagc aaggc----- ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc cgucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUG)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgu-gaug- uucc-c---- ---------- ---------- 5701 -------(gu ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Theil.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Theileria sp.. ACCESSION No information KEYWORDS No information. SOURCE Theileria sp. ORGANISM Theileria sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19081 LOCUS THERR18S 1746 bp ss-rRNA RNA 03-JUN-1993 DEFINITION Theileria sp. 18S ribosomal RNA. ACCESSION L19081 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Theileria sp. schizont rRNA. ORGANISM Theileria sp. Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1746) AUTHORS Allsopp,M.T., Cavalier-Smith,T., de Waal,T. and Allsopp,B.A. TITLE Phylogeny and evolution of the piroplasms JOURNAL Parasitology (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1746 /product="18S ribosomal RNA" /gene="18S rRNA" /label=srRNA /note="putative" source 1..1746 /organism="Theileria sp." /dev_stage="schizont" /sequenced_mol="rRNA" BASE COUNT 455 a 337 c 457 g 497 t ORIGIN BASE COUNT 455 a 337 c 457 g 497 t 4157 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuu-- ---------- -auau-ggu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ---ucguuuc 301 u>ACAUGG-A UAACCGUGC( -U-AAUU)GU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG G-|GGCAG-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCU-(---- ---uaa-)-U GU-CU-UGUA A-UUGGAAU- 1501 ------GAUG ----GGAAUU -UAAA--CCU C-----UU-C C-AGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuucugcu g-cauu-gcc uuuucu--cc uu-gaugagu ugaugc-auu ---------- 1801 ---------- -----gc-g- gcuuau---- ----uucggu cauggu---- ---------- 1861 ---------- ---------- --------uu uccuuguccg gau------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UC-AA-AG-C AGGCuuuu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUAGUU-UAG CAUGGAA|UA -AUAAAG-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|--auu 2821 -uu-guuggu -uu-ua---- --ug----ua CCA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUCCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ua gag-g-u--c gucag(---u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-cu-uua-g -c-acCuu-- ---------- ----gaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggu---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGggu g--cgggacg a-ggc----c uuuc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc cgucccgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaucg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-G(----- 5041 -uuauaaa)U CGCA-A-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucau cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) cggac----g gguaaucuuu ---agu]--- ---------- 5461 -------ACG CAU-C-G--- UGAU-G-GGG AUCGAUUAU( UGCAAUUA)U UAAUCGUG-A 5521 ACGAGG-AAU G--CCUAGUA UG-CGC-AAG (-UCAUCAG- )CUUGU-G-C -AGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--CG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccgc-gaug- uucc-c---- ---------- ---------- 5701 -------(gu ca----)--- ---------- ---------- ---------- -----ggg-- 5761 aacguc-uag -ggaa-|guu -uugugaacc uu-AUC-A-C UUAA-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Ciliop 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS B.american 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M97909 LOCUS BJA16SLRNA 1724 bp ds-DNA INV 01-AUG-1992 DEFINITION Blepharisma americanum small subunit ribosomal RNA gene sequence ACCESSION M97909 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Blepharisma americanum DNA. ORGANISM Blepharisma americanum Eukaryota; Animalia; Protozoa; Ciliophora; Polyhymenophora; Spirotricha; Heterotrichida; Clevelandellina. REFERENCE 1 (bases 1 to 1724) AUTHORS Greenwood,S.J., Schlegel,M., Sogin,M.L. and Lynn,D.H. TITLE Phylogenetic relationships of Blepharisma americanum and Colpoda inflata within the phylum ciliiophora inferred from complete small subunit rRNA gene sequence JOURNAL J. Protozool. 38, 1-6 (1991) STANDARD simple staff_entry BASE COUNT 465 a 351 c 459 g 447 t 2 others ORIGIN BASE COUNT 465 a 351 c 459 g 447 t 4181 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 cuag<----- ---------- ---------- ---------- ---------- -----acguu 301 u>AUAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaagcauuc -aa|guuucu gc|--CCU-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCGA-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACGCGGG- ---Gc(---- ---uuu-)gU ---CU-UGCG A-UUGGAAU- 1501 ------GAGU ----UAAGUG -UAAA--agc c-----uu-u --CGA-GGAC C---->CACU 1561 GGAG|GG-CA A-GU-C-UG- U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aagcucugcg g-ggcg-ggu cgcugg--gc (c--ucg)gu cuggug-acc ---------- 1801 ---------- -----uu-c- cu-cgc-auc -caucu---- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------ga gcaacggcuc 2161 cggcauu--- ---------- ---------- ---aacuugu cgcu------ ---------- 2221 ----gucgug aucaggua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACCU UG-AGCA--A 2461 AUGAGAGUGU UC-CA-GG-C AGGCuu---- ---------- ---------- ---------- 2521 ---------g gGCC-U--GA AUCGUC-CAG CAUGGAA|UA -AUAGAA-GA -GGA---cug 2581 g-g------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cUC|-CAUU 2821 -U--AUUGGU -GU-UA---- -----uggc- gcu--uAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-AUGA-U-U 3061 UAUUA-AAG- A-CAAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u-gc ----(-cauu aaaagua--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-u c-cu-uca-g ca-ucuu--- ---------- ----ccGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GGU-C( --GCAA-)GA 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 -cauggCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcg u--cucuu-- ---------- --gc-ca--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --aagagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----c-ggA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GAcu-uu--g -g-g(----- 5041 --ggcua-)c ucca-a-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|NGCC|CU- 5221 U-AGA--NGC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAG----- ---------- 5281 ---(------ ----)[gcag uaagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---uccg-cg gca(gaaa-) augccc---c gguaac-cuu caaa--]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUUGACUCU( UGGAAUUA)U UGGUCAUC-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AAG (-UCAUCAA- )CUUGC-A-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CCgauuucga gu-gauga-- 5641 ggu-gaau-- ccu-ccgga- cugc-acac- ---------- ---------- ---------- 5701 -------(cu c-----)--- ---------- ---------- ---------- ---------- 5761 --gugu-gug -ggaa-|guu -gaguaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA AGGAUC---- 5881 ---------- -------~|| ||| // LOCUS C.campylum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56532 LOCUS CPDSSRRNA 1754 bp ds-DNA INV 27-AUG-1991 DEFINITION C.campylum small subunit ribosomal RNA gene ACCESSION X56532 KEYWORDS SSU ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. SOURCE Colpidium campylum DNA. ORGANISM Colpidium campylum Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Glaucomidae. REFERENCE 1 (bases 1 to 1754) AUTHORS Greenwood,S.J., Sogin,M.L. and Lynn,D.H. TITLE Phylogenetic relationships within the class Oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit ribosomal RNA gene sequences of Colpidium Campylum, Glaucoma chattoni, and Opisthonecta henneguyi JOURNAL J. Mol. Evol. 33, 163-174 (1991) STANDARD full automatic COMMENT *source: is_germline=Y; See also X56531, X56533 From EMBL entry CCSSRRNA; dated 21-AUG-1991. FEATURES Location/Qualifiers misc_feature 1..21 /note="primer" rRNA 22..1729 /product="small subunit ribosomal RNA" misc_feature 1730..1754 /note="primer" BASE COUNT 511 a 324 c 441 g 478 t ORIGIN BASE COUNT 511 a 324 c 441 g 478 t 4149 others ORIGIN 1 |--------- -----AACAU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA GU|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUUCCGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 UGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAACCGGG- --AAA(---- --cucag)UU U--CUACGGU A-UUGAAAU- 1501 ------GAGA ----ACAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GC-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug c-ccag-gac uauuuc--ga (u--ucg)uc g-ggua-gug ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aagcuaaaau 2161 cggccuu--- ---------- ---------- ---uacuggu ucga------ ---------- 2221 ---cuuagua aguagaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -gcc-c--gU AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuGAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-gaac a---(----- cacg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGucg c--ccugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---acggg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----augua- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaagcau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-uucu- ---------- ---------- ---------- 5701 -------(ga aua---)--- ---------- ---------- ---------- ---------- 5761 -aggag-c-g -ggaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --a~~~~~~~ ~~~~~~~~|| ||| // LOCUS E.aedicula 5903 bp RNA RNA 14-JAN-1985 DEFINITION Euplotes aediculatus. ACCESSION No information KEYWORDS No information. SOURCE Euplotes aediculatus. ORGANISM Euplotes aediculatus. REFERENCE 1 (bases 1 to 2303) AUTHORS No information JOURNAL June 14 1985,Oct.13 1985,Nov.23 1985 STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M14590 Phylo:Eukaryotes,Protozoan BASE COUNT 512 a 376 c 463 g 544 t 4008 others ORIGIN 1 |--------- -UAGUAAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAG|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaagga---- ---------- uuuau-aau- gaa]------ 181 -----|---A CU|G-CAAA- UGGCU-CAUU CAAA-cagu- uau-aguu-- ----uauuug 241 auau<----- ---------- ---------- --------uc aagcuaauau ucuuauuagu 301 u>AAAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -aaaucaugu -ag|guuucu gc|uuCCC-A UCA--GCUU- --GAUGGUA- 1141 GU(-GUAUUG G)ACA-ACCA U-|GGCAU-U CAC|GGGC-U AUCGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AUAAAC)GGC UACC-ACUUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-AUCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGA-A AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA uGAACUAGG- -a---(---- ---uuua)-- -u-CC-UGGG A-UCACAAU- 1501 ------GGGC ----UUGAUU -UGCA-AACA C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGAGUA|U AUAAA--CGU UCCUG-CAG| UUAuuCGAUG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucugag g-uugagacg ggaggguggc uauggccauc gcccga-cuc uuuccucauc 1801 ca-cc---ug uu-ugcg-aa guccgggauu gauuucucgg cuucgggcgc aguaucuuac 1861 cauuucaaua u-ucguaguc uucaucgauu augu------ ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUuCUU UG-AGCA--A 2461 AUUAUAGUGU UU-CA-GG-C AGGCgug--- ---------- ---------- ---------- 2521 ---------C -GCC-G--GA AUACAU-UAG CAUGGUA|UA -AACGAA-UU -GGACcGUGU 2581 gc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- -------ccg uaacugggcu ucuc|-cuua 2821 -uu-guuggu -uu-ga---- ---a----gg ACA-CG-GAG A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGC guuuauuuca 3001 caAGGAGGCA UU|--AGUAU UUAAUUU-CC -AGAG(GU-G AAA---)UUC U-UUGA-A-A 3061 UAUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|Aucg UUUGCC-AA| UG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAu U-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACGUUGCC GAC|UA|--- 3421 --Gggau-cg gag-g-g-cg ----(---ug cacaauc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-ucg-g ca-cCuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -AAGUCuuuu gGGU|-U|C- UGUGGGUAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA UCUUACCAGG UC[cag-aca 4081 uagc-gagga uugaca---- -ga(uugaua gc)------- ucuuucuug- ----auu--c 4141 uauggguauu u]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUCG- U|GGA(-GUG 4261 A)UUC-GUC- -UGG(UU-AA UU)CCGUUAa AC-GAACGAG ACCUC-AG|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuug c--ucgccuu uu-------- --cu-au--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- aagacuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-caa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-u(----- 5041 ---gcaa-)c caca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A UACGU----- ---------- 5281 ---------- -----[acaa cgaggua--- ---------- ---------- ---------- 5341 ---------- ---uaugua( -cuug)uaca u--------- ---------- ---------- 5401 caaugcu-gc ucc(gaaa-) uagacg--ag cuuaaucuu- auaaau]--- ---------- 5461 -------ACG UAU-CG-UG- CU---GCGGA -UAGAUCGU( UGAAAUUA)U GAAUCUUG-A 5521 AGGUGG-AAU U-CCU-AGUA AG-CGC-ACG (-UCACUAA- )CGUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-AAUuucG AG-UGAUcu- 5641 ggugaac-c- ucu-uugga- cugu-cga-- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 -----u-cgc -gaaa-|uua -gagugaacc ug-ACU-A-C UUAGcAGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --AUCUUAUA UUCAUAC~|| ||| // LOCUS G.chattoni 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56533 LOCUS GCHSSRRNA 1746 bp ds-DNA INV 27-AUG-1991 DEFINITION G.chattoni small subunit ribosomal RNA gene ACCESSION X56533 KEYWORDS SSU ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. SOURCE Glaucoma chattoni DNA. ORGANISM Glaucoma chattoni Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Glaucomidae. REFERENCE 1 (bases 1 to 1746) AUTHORS Greenwood,S.J., Sogin,M.L. and Lynn,D.H. TITLE Phylogenetic relationships within the class Oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit ribosomal RNA gene sequences of Colpidium Campylum, Glaucoma chattoni, and Opisthonecta henneguyi JOURNAL J. Mol. Evol. 33, 163-174 (1991) STANDARD full automatic COMMENT *source: is_germline=Y; See also X56531, X56532 From EMBL entry GCSSRRNA; dated 21-AUG-1991. FEATURES Location/Qualifiers misc_feature 1..21 /note="primer" rRNA 22..1719 /product="small subunit ribosomal RNA" misc_feature 1720..1746 /note="primer" BASE COUNT 514 a 326 c 432 g 471 t 3 others ORIGIN BASE COUNT 514 a 326 c 432 g 471 t 4160 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-AGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 UGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAGACCGGG- --AAA(---- --cuacg)UU U--CUACGGU A-CUGAAAU- 1501 ------GAGA ----ACAGUG -UUAA--UCU C-----UU-A G-CGA-GAAA C---->AAUU 1561 G--A|GG-CA A-GC-C-UGC U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|C AUUAA--AG- -NGNG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuucagug u-ccag-guu cgucuc--gg (c--ucg)cc gaggca-acu ---------- 1801 ---------- -----cu-g- ga-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aagcuaaaau 2161 cggccuu--- ---------- ---------- ---uacuggu ucga------ ---------- 2221 ---cuuagug aguagaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UGcAAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -gcc-c--gU AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UA-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- ---NAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-a- ----(----a uauaug---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------u-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGucu c--ccugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---acggg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gugua- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-C-UG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gg ccu(ggga-) agguuc---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGA AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-uca-- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uaag-c-g -gaaa-|aau -aaguaaacc ca-ucc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --agc~~~~~ ~~~~~~~~|| ||| // LOCUS O.granulif 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53486 LOCUS OFARRN16L 1778 bp ds-DNA INV 21-JUN-1991 DEFINITION O. granulifera 16S-like ribosomal RNA ACCESSION X53486 KEYWORDS 16S-like ribosomal RNA; ribosomal RNA. SOURCE Oxytricha granulifera DNA. ORGANISM Oxytricha granulifera Eukaryota; Animalia; Protozoa; Ciliophora; Polyhymenophora; Spirotricha; Hypotrichida; Sporadotrichina; Oxytrichidae. REFERENCE 1 (bases 1 to 1778) AUTHORS Sogin,M.L. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 1778) AUTHORS Schlegel,M., Elwood,H.J. and Sogin,M.L. TITLE Molecular evolution in hypotrichous Ciliates: sequence of the small subuit ribosomal RNA genes from Onychodromus quadricornutus and Oxytricha granulifera (Oxytrichidae, Hypotrichida, Ciliophora) JOURNAL J. Mol. Evol. 32, 64-69 (1991) STANDARD full automatic COMMENT From EMBL 27 entry OGRRN16L; dated 19-MAR-1991. FEATURES Location/Qualifiers misc_feature 1..20 /note="PCR primer" rRNA 21..1757 /product="16S-like ribosomal RNA" misc_feature 1758..1778 /note="PCR primer" BASE COUNT 475 a 361 c 457 g 485 t ORIGIN BASE COUNT 475 a 361 c 457 g 485 t 4125 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaugu---u ---------- -au-a-cagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --ucgaa-uu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGACCGAA- ---GC(---- ---cuau)GU ---UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg g-aggg-ugc caaugu--c- cg-cucguuu gcgugu-gca ---------- 1801 ---------- ------g-c- ggcgcc-c-- -uucca---- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- -uccuuc-ug uuaacguuuc 2161 uugguau--- ---------- ---------- ---ucauuua cugg------ ---------- 2221 ---uuucggg cucagaua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGCuu---- ---------- ---------- ---------- 2521 --------gc gcc--g--gA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UCCU 2821 -UU-GUUGGU -UC-GA---- ------ggga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gag-g-c-g- ----(---cg cuuuauc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ------(--- --)[CCU-AC UAACUAGucg a--accaauc ---------- --uc-c---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gauuggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcga- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-g(----- 5041 --gccaa-)a caca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -guccca-gc ucc(gcga-) ggcagc---u gguaau-c-- agcaau]--- ---------- 5461 -------aug cgu-c-g--- UGAU-G-GGG AUAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUUAC- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUUucG AG-UGGucc- 5641 ggu-gaac-- cuu-uugga- cugc-gcga- ggc------- ---------- ---------- 5701 -------(cc cga---)--- ---------- ---------- ---------- -------g-- 5761 ccuugu-gcg -gaaa-|auc -aaguaaacc au-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --uua~~~~~ ~~~~~~~~|| ||| // LOCUS O.henneguy 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56531 LOCUS OPSSSRRNA 1730 bp ds-DNA INV 19-SEP-1991 DEFINITION O.henneguyi small subunit ribosomal RNA gene ACCESSION X56531 KEYWORDS SSU ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. SOURCE Opisthonecta henneguyi DNA. ORGANISM Opisthonecta henneguyi Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Peritricha; Peritrichida; Sesselina; Opisthonectidae. REFERENCE 1 (bases 1 to 1730) AUTHORS Greenwood,S.J., Sogin,M.L. and Lynn,D.H. TITLE Phylogenetic relationships within the class Oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit ribosomal RNA gene sequences of Colpidium Campylum, Glaucoma chattoni, and Opisthonecta henneguyi JOURNAL J. Mol. Evol. 33, 163-174 (1991) STANDARD full automatic COMMENT *source: strain=ATTC 30600; *source: is_germline=Y; See also X56532, X56533 From EMBL entry OHSSRRNA; dated 21-AUG-1991. FEATURES Location/Qualifiers misc_feature 1..21 /note="primer" rRNA 22..1707 /product="small subunit ribosomal RNA" misc_feature 1708..1730 /note="primer" BASE COUNT 509 a 315 c 428 g 478 t ORIGIN BASE COUNT 509 a 315 c 428 g 478 t 4173 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-UCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguau---u ---------- -gu-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAU-cagu- uau-aauu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --ucgaaagu 301 u>ACAUGG-A UAACCGUGA( -C-AA-A)UU ACAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGA-GC-GA- AAAUU-GCCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGC -|A|GUGACG AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAACUCUUG- ----G(---- --uuauu)C- ---UA-AGA- A-GUGUAAU- 1501 ------GAGG ----AUAAUU -UAAA--ACC C-----UU-A C-CGA--AAG C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuc-ugg c-uguu-cga uccucg--a- gc-ucuguag ccgagg-acu ---------- 1801 ---------- -----cg-a- caguca-ucc -gcuu----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaauauaugu 2161 ucgccuu--- ---------- ---------- ---uaaccgg gugg------ ---------- 2221 ---cuauaug aguaagca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACCU UG-AGAA--A 2461 AACAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 ---------- gucc-g--gA AUGCAU-UAG CAUGGAA|UA -AUAGAA-UA -UGACuGAAG 2581 u--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CGAU 2821 -UU-AUUGGU -UU-GA---- --------gg CUU-UA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --CGGGGGCA UU|--GGUAC UUGACAG-UC -AGAG(GU-G AAA---)UUC U-AGGA-U-U 3061 UGUCG-AAG- A-CUAACA-A AUGC(-GAAA )--CG|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --ggauu-ca gau-g-a-au ----(----c auaaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------gu-u c-au-uug-g ga-ccgu--- ---------- ----agGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGAAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -UU-UUGCA- -CCACCAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGUCUGCG|G CU-UAAUUUG (ACUCAA-CA )CUGG--GAA ACUCAUCAGG GC[aag-aag 4081 auug-uagga uu-----gac aga(-uugag agu)------ ucuuu----- cuu-gauu-g 4141 gucuag---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGuac a--cagau-- ---------- --ga-caa-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---aucug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugaua- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Aug-u -g-a(----- 5041 --uguaa-)u caca-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGA-GCUGC A-CGCGUACU ACAAU--G-G UGCUU----- ---------- 5281 ---(------ ----)[ucaa cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ga ucc(gaaa-) ggauuu---g gguaau-cuu uuuagu]--- ---------- 5461 -------gag cac-c-g--- UGCU-U-GGG AUAGAUCUU( UGUAAUUA)U GGAUCUUG-A 5521 ACUAGG-AAU U--CCUAGUA AG-CAC-GCG (-UCAUCAG- )CGCGU-G-C -UGAUUACG- 5581 U-CCCUGCAA AA|UGUA-CA CACCGCCCGU CGCUAU-U-A CC-GAUU--G AG-UGUaaa- 5641 ggu-gaac-- cuu-cucga- uaga-c---- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 -----g-ucc -agaa-|auu -aaguaaacc uu-ugc-a-c uuag-AGGAA AU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~--- 5881 --~~~~~~~~ ~~~~~~~~|| ||| // LOCUS O.nova.1 5903 bp RNA RNA 27-JAN-1984 DEFINITION Oxytrich nova 16S. ACCESSION No information KEYWORDS No information. SOURCE Oxytrich nova 16S. ORGANISM Oxytrich nova 16S. REFERENCE 1 (bases 1 to 2303) AUTHORS No information JOURNAL O.nova:who:published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X03948 Phylo:Eukaryotes,Protozoan BASE COUNT 481 a 348 c 449 g 496 t 4129 others ORIGIN 1 |--------- ---GUAAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagugu---u ---------- -au-a-cagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaauu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U CAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGACCGAA- ---GC(---- ---cuau)GU ---UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucuggg a---ga-gcg ccaaug--u- cg-ucuuguu gacugu-gca ---------- 1801 ---------- ------g-c- ggcgcu-c-- -uuccau--- -------ccu uc-------- 1861 ug-------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------uu aacguuucgg 2161 guauuca--- ---------- ---------- ----uuuacu cguc------ ---------- 2221 ----ucgggc UCaGA-ua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-gG-C AGGCuc---- ---------- ---------- ---------- 2521 --------gc GCC--g--GA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---U|--CCU 2821 -UU-GUUGGU -UU-GA---- ----gg--ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gag-g-c-g- ----(--cgc uuuauc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ------(--- --)[CcU-aC UAACUAGucg a--------- ---------- --uu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uugc uaagcgaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cccgA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-a(----- 5041 ---cuaa-)a caca-A-GGA AGuU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccca-gc ucc(gaga-) ggcagc---u gguaaucag- --caau]--- ---------- 5461 -------aug cgu-c-g--- uGAU-G-GGG AUAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUUAC- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUuucG AG-UGAucc- 5641 ggu-gaac-- cau-uugga- ccgc-ggaa- gu-------- ---------- ---------- 5701 -------(cu cgu---)--- ---------- ---------- ---------- ---------- 5761 auuucu-gug -gaaa-|auc -uaguaaacc au-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUAA~~~~ ~~~~~~~~|| ||| // LOCUS O.nova.2 5903 bp RNA RNA 20-MAY-1987 DEFINITION Oxytricha nova.; ribosomal RNA. ACCESSION M14601 KEYWORDS ribosomal RNA. SOURCE Oxytricha nova. ORGANISM Oxytricha nova. REFERENCE 1 (bases 1 to 1771) AUTHORS Elwood,H.J., Olsen,G.J. and Sogin,M.L. TITLE The Small-Subunit Ribosomal RNA Gene Sequences from the Hypotrichous Ciliates Oxytricha nova and Stylonychia pustulata JOURNAL Mol. Biol. Evol. 2, 399-410 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M14601 Computer-readable sequence for [1] kindly provided by M.L.Sogin , 19-OCT-1986. NCBI gi: 159822 BASE COUNT 480 a 348 c 448 g 495 t 4132 others ORIGIN 1 |--------- -----AAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagugu---- ---------- uauac-agu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaauu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U CAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CGGACCGAA- -GC--(---- ---cuau)-- GU-UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuggg a-gagcgcca augucgucuu guugacugug cagcgg-cgc ucuuccaucc 1801 uu-cu---gu ua-acgu-uu cggguauuca uuuacucguc ucgggcucag aua------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGCucg--- ---------- ---------- ---------- 2521 ---------C -GCC-G--GA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uccu 2821 -uu-guuggu -uu-ga---- --gg----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Gggau-cg gag-g-c-g- ----(--cgc uuuauc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-ucg-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ---------- ---[CCU-AC UAACUAGucg auucguugcu aagcgaaccc ga-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-a(----- 5041 ---cuaa-)a caca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---------- -----[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 -uucc-cagc ucc(gaga-) ggcag----c uggua-auc- agcaau]--- ---------- 5461 -------AUG CGU-CG-UG- AU---GGGGA -UAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U-CCU-AGUA AG-CGC-AAG (-UCAUUAC- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUuucG AG-UGAUcc- 5641 ggugaac--- cau-uugga- ccgc-ggaa- gu-------- ---------- ---------- 5701 -------(cu cgu---)--- ---------- ---------- ---------- ---------a 5761 uuucug-ugg -aaaa-|-uc -uaguaaacc au-AUC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS O.quadrico 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53485 LOCUS ONYRRN16L 1771 bp ds-DNA INV 21-JUN-1991 DEFINITION O. quadricornutus 16S-like ribosomal RNA ACCESSION X53485 KEYWORDS 16S-like ribosomal RNA; ribosomal RNA. SOURCE Onychodromus quadricornutus DNA. ORGANISM Onychodromus quadricornutus Eukaryota; Animalia; Protozoa; Ciliophora; Polyhymenophora; Spirotricha; Hypotrichida; Sporadotrichina; Oxytrichidae. REFERENCE 1 (bases 1 to 1771) AUTHORS Sogin,M.L. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 1771) AUTHORS Schlegel,M., Elwood,H.J. and Sogin,M.L. TITLE Molecular evolution in hypotrichous Ciliates: sequence of the small subuit ribosomal RNA genes from Onychodromus quadricornutus and Oxytricha granulifera (Oxytrichidae, Hypotrichida, Ciliophora) JOURNAL J. Mol. Evol. 32, 64-69 (1991) STANDARD full automatic COMMENT From EMBL 27 entry OQRRN16L; dated 19-MAR-1991. FEATURES Location/Qualifiers misc_feature 1..20 /note="PCR primer" rRNA 21..1750 /product="16S-like ribosomal RNA" misc_feature 1751..1771 /note="PCR primer" BASE COUNT 481 a 342 c 451 g 496 t 1 others ORIGIN BASE COUNT 481 a 342 c 451 g 496 t 4133 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaugc---u ---------- -au-a-cagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --ucaaa-uu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCGU-U CAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGACCGAA- ---GC(---- ---cuau)GU ---UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg g-agag-ugc caaugu--cg uc-uuguuga cugugc-agc ---------- 1801 ---------- -----gg-c- gcucuu-cca -uccuu---- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------cu guuaacguuu 2161 cugcuau--- ---------- ---------- ---uuauuua gugg------ ---------- 2221 ---ucucggg cucagaua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGCuc---- ---------- ---------- ---------- 2521 --------gc guc--g--gA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UCCU 2821 -UU-GUUGGU -UU-GA---- ------ggga UUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gag-g-c-g- ----(--cgc uuuacc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------u-c c-gu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ------(--- --)[CCU-AC UAACUAGuug a--cucguu- ---------- --gc-ua--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --agcgag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----auuaa- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-a(----- 5041 ---cuar-)a caca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccca-gc ucc(gaga-) ggcagc---u gguaau-c-- agcaau]--- ---------- 5461 -------aug cgu-c-g--- UGAU-G-GGG AUAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUUAG- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUUucG AG-UGAucc- 5641 ggu-gaac-- cau-uugga- cugc-gagg- uc-------- ---------- ---------- 5701 -------(cu cgu---)--- ---------- ---------- ---------- ---------- 5761 gacuuu-gug -gaaa-|auc -uaguaaacc au-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --agc~~~~~ ~~~~~~~~|| ||| // LOCUS P.tetraure 5903 bp RNA RNA 14-JAN-1985 DEFINITION Paramecium tetraurelia. ACCESSION No information KEYWORDS No information. SOURCE Paramecium tetraurelia. ORGANISM Paramecium tetraurelia. REFERENCE 1 (bases 1 to 1771) AUTHORS No information JOURNAL June 14 1985,Oct.10 1985 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X03772 Phylo:Eukaryotes,Protozoan BASE COUNT 492 a 326 c 450 g 485 t 4150 others ORIGIN 1 |--------- -----AAUCU GGU(UGA)UC CU|GCCAGA- A-GUCA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaauag---- ---------- uauac-agu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- ---ugcaaau 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -aaaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCC-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AG CAACUCGUG- -CGG-(---- ---guuu)-C CGUUA-CGGG A-UUGCAAU- 1501 ------GAGA ----UAAGUC -CAAA--UCC G-----UA-A A-CGA-UUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aaauucgagu c-aguuacua guuggcucuu cgucaguuag uuaauu-gau ucuccgucua 1801 ca-au---cc cu-uuug-cg cuuuaggguu gcagcugggc gaguagaca- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACCU UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUcuu--- ---------- ---------- ---------- 2521 ---------C -GCC-G--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuUGGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|---uu 2821 -uu-guuggu -uu-ua---- ---g----ga CUU-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --Gagau-cg gaa-g-g-gu aa--(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- --uuaguc-c c-uu-ucg-g ca-uCgu--- ---------- ----aaGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[aaa-aca 4081 ugga-uggga uu-----gac aga(-uugaa agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGuuu g--cuugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-uaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Aug-u -a-u(----- 5041 ---guaa-)g ugca-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CCU 5221 A-G-A-CGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACGU----- ---------- 5281 ---------- -----[ucag cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---a------ 5401 uuuaccu-gu ccc(gaaa-) gggcac---g ggaaaucuu- guuagg]--- ---------- 5461 -------ACG UGU-CG-UG- CU---GGGGA -UAGAUCUU( UGCAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U-CCU-UGUA AG-CAC-AGG (-UCAUCAG- )CCUGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUuucG AG-UGAUgu- 5641 ggugaac--- uau-cugga- cugc-ggau- ggg------- ---------- ---------- 5701 -------(cu cga---)--- ---------- ---------- ---------- -------a-- 5761 ccauuu-gcg -ggaa-|guu -ucguaaacc uu-AUC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 -UUUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.pustulat 5903 bp RNA RNA 27-JAN-1984 DEFINITION Stylonychia pustulata. ACCESSION No information KEYWORDS No information. SOURCE Stylonychia pustulata. ORGANISM Stylonychia pustulata. REFERENCE 1 (bases 1 to 1771) AUTHORS No information JOURNAL Dec 27 1984 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X03947,M14600 Phylo:Eukaryotes,Protozoan BASE COUNT 484 a 345 c 446 g 499 t 4129 others ORIGIN 1 |--------- ---GUAAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaugu---u ---------- -au-a-cagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaauu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucauuc -aa|guuucu gc|--CCC-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U CAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGACCGAA- ---GC(---- ---cuau)GU ---UU-CGGG A-UUGCAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCAUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucuggg a---ga-gcg ccaaug--u- cg-ucuuguu gacugu-gca ---------- 1801 ---------- ------g-c- ggcgcu-c-- -uuccau--- -------ccu uc-------- 1861 ug-------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------uu aaccuuucgg 2161 guauuua--- ---------- ---------- ----uuuacu cguc------ ---------- 2221 ----uggagc ucaga-ua-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACCU UG-AGAA--A 2461 AUUAGAGUGU UC-CA-gG-C AGGCuc---- ---------- ---------- ---------- 2521 --------gc GCC--g--GA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUUAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---U|--CCU 2821 -UU-GUUGGU -UU-GA---- ------ggga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CAGA-U-U 3061 UGUUA-AAG- A-CUAACU-U AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ca gag-g-c-g- ----(--cgc uuuauc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-cu-uug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(-uugau agc)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ------(--- --)[CcU-aC UAACUAGucu a--uccguu- ---------- --gc-ua--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --agcgga-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuugA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-a(----- 5041 ---cuaa-)a caca-A-GGA AGuU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[acag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccca-gc ucc(gaga-) ggcagc---u gguaau-c-- agcaau]--- ---------- 5461 -------aug cgu-c-g--- uGAU-G-GGG AUAGAUCUU( UGGAAUUA)U AGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUUAC- )CUUGC-G-C -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAUuucG AG-UGAucc- 5641 ggu-gaac-- cau-uugga- ccgc-gggg- cu-------- ---------- ---------- 5701 -------(cu ugc---)--- ---------- ---------- ---------- ---------- 5761 agucuu-gug -gaaa-|auc -uaguaaacc au-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUAA~~~~ ~~~~~~~~|| ||| // LOCUS T.australi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56167 ID TASSRRNA standard; DNA; INV; 1752 BP. XX AC X56167; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.australis gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena australis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30831; CC *source: sub_strain=MGO (intron-); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 516 A; 316 C; 436 G; 484 T; 0 other; BASE COUNT 516 a 316 c 436 g 484 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ccugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.borealis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M26359 ID TBUM731RR standard; DNA; INV; 1752 BP. XX AC M26359; XX DT 23-NOV-1989 (Rel. 21, Created) DT 02-MAR-1992 (Rel. 31, Last updated, Version 4) XX DE T. borealis small subunit ribosomal RNA gene for 16S-like RNA XX KW 16S ribosomal RNA homologue; ribosomal RNA small subunit. XX OS Tetrahymena borealis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RP 1-1752 RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) to the EMBL Data Library by: RL Sogin M.L., Marine Biological Laboratory, Center for Molecular RL Evolution, Woods Hole, MA 02543, USA. XX CC *source: strain=UM731 (intron-).; XX CC See - and - for associated CC sequences. XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 318 C; 435 G; 482 T; 0 other; BASE COUNT 517 a 318 c 435 g 482 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---cua-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-ugug-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--cuugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUG)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-ggua- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uacu-gcg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.canadens 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56170 ID TCSSRRNAB standard; DNA; INV; 1752 BP. XX AC X56170; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.canadensis gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena canadensis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30368; CC *source: sub_strain=UM 1215 (intron-); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 318 C; 435 G; 482 T; 0 other; BASE COUNT 517 a 318 c 435 g 482 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---cua-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-ugug-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--cuugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUG)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-ggua- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uacu-gcg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.capricor 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56172 ID TCSSRRNAC standard; DNA; INV; 1752 BP. XX AC X56172; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.capricornis gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena capricornis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30291; CC *source: sub_strain=AU-f1-1(intron-); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 316 C; 435 G; 484 T; 0 other; BASE COUNT 517 a 316 c 435 g 484 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.hegewisc 5903 bp RNA RNA 11-JAN-191 DEFINITION Tetrahymena hegewishii subsp. was Tetrahymena hegewischi. ACCESSION No information KEYWORDS No information. SOURCE Tetrahymena hegewishii subsp. was Tetrahymena hegewischi. ORGANISM Tetrahymena hegewishii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56166 ID THSSRRNA standard; DNA; INV; 1752 BP. XX AC X56166; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.hegewischi gene for small subunit ribosomal RNA (16S-like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena hegewischi OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30823; CC *source: sub_strain=KP7 (intron-); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 317 C; 435 G; 483 T; 0 other; BASE COUNT 517 a 317 c 435 g 483 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGA- -GAAC(---- ---uaa-)GU UCUUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu a--ccugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.hyperang 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56173 ID THSSRRNAB standard; DNA; INV; 1752 BP. XX AC X56173; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.hyperangularis gene for small subunit ribosomal RNA (16S like DE rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena hyperangularis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30273; CC *source: sub_strain=EN 101 (intron+); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 314 C; 435 G; 486 T; 0 other; BASE COUNT 517 a 314 c 435 g 486 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aua-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.malaccen 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M26360 ID TMMP75RR standard; DNA; INV; 1753 BP. XX AC M26360; XX DT 23-NOV-1989 (Rel. 21, Created) DT 02-MAR-1992 (Rel. 31, Last updated, Version 4) XX DE T. malaccensis small subunit ribosomal RNA gene for 16S-like rRNA XX KW 16S ribosomal RNA homologue; ribosomal RNA small subunit. XX OS Tetrahymena malaccensis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RP 1-1753 RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1753 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) to the EMBL Data Library by: RL Sogin M.L., Marine Biological Laboratory, Center for Molecular RL Evolution, Woods Hole, MA 02543, USA. XX CC *source: strain=MP75 (intron+); CC *source: isolate=ATCC 50066.; XX CC See - and - for related sequences. XX FH Key Location/Qualifiers FH XX SQ Sequence 1753 BP; 518 A; 317 C; 434 G; 484 T; 0 other; BASE COUNT 518 a 317 c 434 g 484 t 4150 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---auac)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----ACAGUG -UAAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (u--ucg)uc g-ugug-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--cgugu-- ---------- --ga-aua-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaugu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aauaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcaa aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUG)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-gcg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.nanneyi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56169 ID TNSSRRNA standard; DNA; INV; 1752 BP. XX AC X56169; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.nanneyi gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena nanneyi OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30840; CC *source: sub_strain=XQ5 (intron+); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 314 C; 435 G; 486 T; 0 other; BASE COUNT 517 a 314 c 435 g 486 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aua-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.patula 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56174 ID TPSSRRNAB standard; DNA; INV; 1752 BP. XX AC X56174; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.patula gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena patula OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 50064; CC *source: sub_strain=LFF (intron-, macrostome form); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 517 A; 315 C; 435 G; 485 T; 0 other; BASE COUNT 517 a 315 c 435 g 485 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.pigmento 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M26358 ID TPUM1286 standard; DNA; INV; 1752 BP. XX AC M26358; XX DT 23-NOV-1989 (Rel. 21, Created) DT 02-MAR-1992 (Rel. 31, Last updated, Version 4) XX DE T. pigmentosa small subunit ribosomal RNA gene for 16S-like RNA XX KW 16S ribosomal RNA homologue; ribosomal RNA small subunit. XX OS Tetrahymena pigmentosa OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RP 1-1752 RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) to the EMBL Data Library by: RL Sogin M.L., Marine Biological Laboratory, Center for Molecular RL Evolution, Woods Hole, MA 02543, USA. XX CC *source: strain=UM 1286 (intron-).; XX CC See - and -<56174> for associated CC sequences. CC The original sequence was typed in from the paper. However, three CC rather than two gs were typed in between bases 754 and 755. The CC sequence now corresponds to the paper and the submission ([1] and CC [2]). XX FH Key Location/Qualifiers FH FT old_sequence 754..755 FT /note="gg was ggg (see CC)" XX SQ Sequence 1752 BP; 517 A; 314 C; 435 G; 486 T; 0 other; BASE COUNT 517 a 314 c 435 g 486 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uaa-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UUAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- gg-cau-acg -ucu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaggca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--ucugu-- ---------- --ga-aua-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acagau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUU)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugu-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-acg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.pyriform 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56171 ID TPSSRRNA standard; DNA; INV; 1752 BP. XX AC X56171; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.pyriformis gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena pyriformis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: sub_strain=GL-c (intron-, a-micronuclear); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 518 A; 316 C; 436 G; 482 T; 0 other; BASE COUNT 518 a 316 c 436 g 482 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uua-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UAAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (c--ucg)uc g-agug-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--cuugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUG)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-ggua- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uacu-gcg -ggaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.thermoph 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56165 ID TTSSRRNA standard; DNA; INV; 1753 BP. XX AC X56165; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.thermophila gene for small subunit ribosomal RNA (16S-like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena thermophila OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1753 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30377; CC *source: sub_strain=A-17682a (intron+); XX FH Key Location/Qualifiers FH XX SQ Sequence 1753 BP; 518 A; 317 C; 433 G; 485 T; 0 other; BASE COUNT 518 a 317 c 433 g 485 t 4150 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---uuac)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----ACAGUG -UAAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu cauuuc--ga (u--ucg)uc g-ugug-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--cuugu-- ---------- --aa-aua-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aauaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcaa aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUG)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-gaca- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uguu-gcg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.tropical 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56168 ID TTSSRRNAB standard; DNA; INV; 1752 BP. XX AC X56168; XX DT 29-MAY-1992 (Rel. 32, Created) DT 29-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE T.tropicalis gene for small subunit ribosomal RNA (16S like rRNA) XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Tetrahymena tropicalis OC Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX RN [1] RA Sogin M.L., Ingold A., Karlok M., Nielsen H., Enberg J.; RT "Phylogentic evidence for the acquisition of ribosomal RNA introns RT subsequent to the divergence of some of the major Tetrahymena RT groups"; RL EMBO J. 5:3625-3630(1986). XX RN [2] RP 1-1752 RA Sogin M.L.; RT ; RL Submitted (14-NOV-1990) to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORATORY, CENTRE FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX CC *source: strain=ATCC 30352; CC *source: sub_strain=TC3 (intron-); XX FH Key Location/Qualifiers FH XX SQ Sequence 1752 BP; 521 A; 316 C; 434 G; 481 T; 0 other; BASE COUNT 521 a 316 c 434 g 481 t 4151 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- U-A-CA-UAU --GCUUGUCU 61 UAAA|-UAUU AA-CCCAUGC A-UGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- ---------u caguau---u ---------- -ga-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAa-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uuaaagau 301 u>ACAUGG-A UAACCGAGC( -U-AAUU)GU UGGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucaucu -aa|guuucu gc|--CCU-A UCA--GCUCU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCAG-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAAC (UACG-)GUU 1261 CGGCAGC-A- ---------| GGG-AA-GA- AAAUU-GGCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GCC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAGCUGGG- -AAAC(---- ---cua-)GU UUCUA-CGGC A-UUGAAAU- 1501 ------GAGA ----AAAGUG -UAAA--UCU C-----UU-A G-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-CAUGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc--ug u-ucag-guu uauaac--ga (c--ucg)uc g-ugua-aaa ---------- 1801 ---------- -----cu-g- ga-cau-acg -uuu------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------gc aaacuaaaau 2161 cggccuu--- ---------- ---------- ---cacuggu ucga------ ---------- 2221 ---cuuaggg aguaaaca-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-CA-GG-C AGGUuu---- ---------- ---------- ---------- 2521 --------ua -GCC-C--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGACuAAGU 2581 c--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CAUU 2821 -UU-AUUGGU -UC-UU---- --------gg AUU-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUA-AGG- A-CUAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCAAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUACC GAC|UC|--- 3421 --gggau-cg gcu-g-g-aa ----(----- uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugu-c c-ag-ucg-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGAAGU AU--GGUAC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-CAGCA- -C-AC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACGAGC GC[aag-aca 4081 gaga-aggga uu-----gac aga(-uugag agc)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcu g--cuugu-- ---------- --ga-aca-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --acaggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-guA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g ug-c(----- 5041 --aagaa-)g ccaa-U-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CC- 5221 U-AGA-CGUG CUCG-GCCGC A-CGCGCGUU ACAAU--G-A CUGGC----- ---------- 5281 ---(------ ----)[gcag aaaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-gu ccu(ggga-) agguac---g gguaau-cuu auuaau]--- ---------- 5461 -------acc agu-c-g--- UGUU-A-GGG AUAGUUCUU( UGGAAUUG)U GGAUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AG-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCG UU|UGUA-CA CACCGCCCGU CGCUUG-U-A GU-AAC---G AA-UGGucu- 5641 ggu-gaac-- cuu-cugga- cugc-gaua- ---------- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- ---------- 5761 --uauu-gcg -gaaa-|aau -aaguaaacc cu-acc-a-u uugg-AACAA CA-AGAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Dinoph 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS C.cohnii 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M64245 M34847 LOCUS CCORR16S 1796 bp ds-DNA INV 18-APR-1991 DEFINITION Crypthecodinium cohnii 16S-like ribosomal RNA (16S rRNA) gene sequence. ACCESSION M64245 M34847 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Crypthecodinium cohnii DNA. ORGANISM Crypthecodinium cohnii Eukaryota; Plantae; Thallobionta; Chromophycota; Dinophyceae; Dinophycidae; Peridiniales; Crypthecodiniaceae. REFERENCE 1 (bases 1 to 1796) AUTHORS Gajadhar,A.A., Marquardt,W.C., Hall,R., Gunderson,J., Ariztia-Carmona,E.V. and Sogin,M.L. TITLE Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates JOURNAL Mol. Biochem. Parasitol. 45, 147-154 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1796 /product="16S-like ribosomal RNA" /gene="16S rRNA" BASE COUNT 483 a 338 c 458 g 517 t ORIGIN BASE COUNT 483 a 338 c 458 g 517 t 4107 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-GA GU|------- |-------(- ---)[----- 121 ---------- --------cu augccu--uu ---------- -ac-a-cggu uaa]------ 181 -----|---G CU|G-CGAA- UGGCU-CAUU AUAA-cagu- aau-gauc-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------- ---uuaucgu 301 u>ACAUGG-A UAACUACAG( -U-AAUU)CU GGAGC-CAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucucau -ga|guuucu ga|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCAA-U GAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCUU-G( ---aca--)C 1321 AAGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- --gca(---- ---ucca)ug u--CU-UGUA A-UUGGAAU- 1501 ------GAGC ----AGAAUU -UAAA--ACA C-----UU-U G-CAA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauu------ ---------- ---------- ---------- ---------- ---------- 1801 ---------- --------u- -cugcauagg g-cug--uug g--u-cc-ac ccucugggug 1861 ugua------ ---------- ------uc-u gacau-g--- uucu-gugc- -auga-gucu 1921 u--------g auggcuacag ggccuucgcu ggucguguag uugucagcua ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -UUUUACUUU 2521 G-AGGA--AA UUAG-A-GUG UUUCA-AG-C AGGCaugu-- ---------- ---------- 2581 ---------- ---------- -gCCUU-GAA UAUAU-UAGC AUGGAA|UA- AUGAAA-UUG 2641 AG---cuuu- gg-------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- auCU|--UUU 2821 -UU-AUUGGU -UU-CG---- -----AGAA- CCA--UCGCA A--CGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAU ---------- 3001 --UGGGGGCA UU|--UGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUUA-AAG- A-CACACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCUU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACCAUGCC AAC|UA|--- 3421 --gagau-ug gggug-a-gu g---(---uc auuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugc-u c-uc-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGA UC[cag-aca 4081 ucgg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGcua ----cacaug gc-------- --cu-ag--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------g cuaugugg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guaaG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -a-u(----- 5041 --guuca-)a ugca-A-GGA AGUC-UGAGG CAAUUA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auuuccu-ug ccu(ggaa-) ggguu----g gguaau-cuc uuuaaa]--- ---------- 5461 -------uug cau-c-g--- uGAU-G-GGG AUAGACUCU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AA-CAC-GAG (-UCAACAU- )CUCGU-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ug-ugcuuc- 5641 ggu-gaau-- aau-ucgga- ccgu-uccu- caua-agag- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- -cuc-uu--- 5761 ugaggg-gug -gaaa-|guu -uggugaacc ac-agc-a-c auag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-U CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS A.tamarens 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X54946 LOCUS AT18SRNA 1800 bp RNA PLN 02-JUN-1992 DEFINITION A.tamarense 18S ribosomal RNA ACCESSION X54946 KEYWORDS 18S ribosomal RNA. SOURCE Alexandrium tamarense ORGANISM Alexandrium tamarense Eukaryota; Plantae; Thallobionta; Chromophycota; Dinophyceae; Dinophycidae; Peridiniales. REFERENCE 1 (bases 1 to 1800) AUTHORS Ragan,M.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1990) Ragan M.A., Institute for Marine Biosciences, National Research Council of Canada, 1411 Oxford Street, Halifax, Nova Scotia, Canada B3H 3Z1. STANDARD full automatic REFERENCE 2 (bases 1 to 1800) AUTHORS Destombe,C., Cembella,A.D., Murphy,C.A. and Ragan,M.A. TITLE Nucleotide sequence of 18S ribosomal RNA gene from the marine dinoflagellate Alexandrium tamarense (Lebour) Balech JOURNAL Phycologia 31, 121-124 (1992) STANDARD full automatic REFERENCE 3 (bases 1 to 1800) AUTHORS Ragan,M.A. TITLE Direct Submission JOURNAL Submitted (29-OCT-1990) M.A. Ragan, INSTITUTE FOR MARINE BIOSCIENCES, NATIONAL RESEARCH COUNCIL OF CANADA, 1411 OXFORD STREET, HALIFAX NOVA SCOTIA, B3H 3Z1, CANADA STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1800 /product="18S rRNA" BASE COUNT 498 a 316 c 454 g 532 t ORIGIN BASE COUNT 498 a 316 c 454 g 532 t 4103 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GG-(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--uc ---------- -auuu-ugu- gaa]------ 181 -----|---A CU|G-CAAA- UGGCU-CAUU AAAa-cagu- uau-aaug-- ----uauuug 241 acaa<----- ---------- ---------- ---------- ---------- ---ucaacuc 301 u>AUAUGG-A UAUCUGUGG( -A-AAUU)CU AUAGU-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -aauucauuc -ca|guuucu ga|--CCU-A UCA--GCUUU C-GACGGUA- 1141 AG(-GUAUUG G)CUU-ACCG U-|GGCAA-U GAC|AGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCU(U-G AGAAAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---gca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAAG- -GCA-(---- ---ucca)-U GU-CU-UGUA C-UUGGAAU- 1501 ------GAAU ----GGAUUU -UAAA--CCU U-----UC-U G-UAA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-ugc u-gagg-aug gcuggu--c- cg-cccucug ggugag-uau ---------- 1801 ---------- ------u-u- ggca------ --------ca gccuga---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---gcauuua 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- cuugaaa-gc acaacugcac 2161 (uugacu--- ---------- ---------- ---)gugugg ugug------ ---------- 2221 ---uuauu-- --------gg gaac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AGGA--A 2461 AUCAGAGUGU UU-CA-AG-C AGGUG----- ---------- ---------- ---------- 2521 -------UUU GGCC-U-UGA AUACAU-UAG CAUGGAA|UA -AUAAUC-AA -G-AUcgUGA 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-GUUU 2821 -UU-GUUGGU -UU-CU---- ------AGaa UUG-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUGAUCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUUA-AAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- CCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACCAUGCC AAC|UA|--- 3421 --GAgau-ug aag-g-uugu u---(--acu uguau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-uu-uca-g ca-cccu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uaau-gagga uu-----gac gga(uugaua g-c)------ uuuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAguua c--auguaau ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------auu augugg---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gcag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-u(----- 5041 --gcaua-)a ugca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGUGU----- ---------- 5281 ---------- -----[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ucaaccu-ug ccu(ggaa-) agguu----u gguaau-cuu --gaac]--- ---------- 5461 -------agg cau-c-g--- uGAU-G-GGG AUUGUUUAU( UGCAAUUA)U UAACCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CUU-GAG (-UCAUCAG- )CUUGU-G-C -UGAUUAUG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gaau-- aau-uugga- cugu-agca- augu-ucag- ---------- ---------- 5701 -------(uu c-----)--- ---------- ---------- ---------- -uug-aac-- 5761 aacgca-aug -gaaa-|guu -uaaugaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C UGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS A.belauens 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L13719 LOCUS AMMRGSS 1798 bp ds-DNA INV 05-APR-1993 DEFINITION Amphidinium belauense ribosomal RNA small subunit gene. ACCESSION L13719 KEYWORDS ribosomal RNA small subunit. SOURCE Amphidinium belauense (strain 324) DNA. ORGANISM Amphidinium belauense Eukaryota; Protista; Dinoflagellata; Dinophyceae; Dinophycidae; Gymnodiniales; Gymnodiniaceae. REFERENCE 1 (bases 1 to 1798) AUTHORS McNally,K.L., Govind,N.S., Thome,P.E. and Trench,R.K. TITLE Small subunit ribosomal DNA sequence analyses and a reconstruction of the inferred phylogeny among symbiotic dinflagellates (Pyrrophyta) JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1798 /standard_name="SSU rRNA" /product="ribosomal RNA small subunit" /evidence="EXPERIMENTAL" misc_feature 1..21 /function="PCR 5'-end primer region" /standard_name="eukaryotic universal primer A" /evidence="EXPERIMENTAL" misc_feature complement(1766..1798) /function="PCR 3'-end primer" /standard_name="eukaryotic universal primer B" /evidence="EXPERIMENTAL" source 1..1798 /organism="Amphidinium belauense" /strain="324" /sequenced_mol="DNA" BASE COUNT 447 a 383 c 495 g 473 t ORIGIN BASE COUNT 447 a 383 c 495 g 473 t 4105 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GC|------- |--------- ----[----- 121 ---------- --------au aagcgu--uu ---------- --cac-agc- aag]------ 181 -----|---G CU|G-CAAA- UGGCU-CAUU AAAA-cagc- aau-gauu-- ----uucgca 241 gugc<----- ---------- ---------- ---------- ---------- ---uucauca 301 c>ACAUGG-A UAACUGUGG( -A-AAAU)CU AGGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gaacugcac -aa|guuucu ga|--CCU-A UCA--GCUUC C-GACGCUA- 1141 GG(-GUAUUG G)CCU-ACUG U-|GGCGU-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G ACACAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGCA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUAUGGG- -gca-(---- ---ucca)-u gu-CU-UGUA A-UUGGA-U- 1501 ------GAAC ----UAGCUC -CAAA--CAU G-----UU-G G-UGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguc a-agga-caa cugguc--cg cc-c--uccg gguga--gca ---------- 1801 ---------- -----ca-c- agcuug-guc -u--uggcau cuugcu-gga ac-------- 1861 cugugcugug --cuuggcug u----auggc a-----cagg gcucagcac- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUCACUU UG-AGGA--A 2461 AUUGGAGUGU UU-CA-ag-c aggcacau-- ---------- ---------- ---------- 2521 ---------- gcCU-U-UGG ACACAG-UAG CAUGGAA|UA -AUUAGA-UU -GGGCcUUuG 2581 cu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|--AUC 2821 -UU-GUCGGU -UU-AU---- -----gg-ag CUG-AG-GUG A--GAAUUAA UG--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UUGU ---------- 3001 --UGGGGGCA UC|--CGUAU UUAGCCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 UGCUA-AAG- A-CGGACG-A CUGC(-GAAA )--GC|G--- UUUGCC-CA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-u-cg uuag(----u ugca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-ca-uca-g ca-ccug--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-C|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagg-uagga uc-----gac aga(uugaua g-c)------ ucuuu----- cgu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-Au|- ---------- 4321 ---------- ---[cug-GC UAAGUAGcua u--acauag- --------cu ccag-uu--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---uugug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gacag- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Ucg-u -g-c(----- 5041 --gccua-)g cacg-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A Uacuu----- ---------- 5281 ---------- -----[ucag cgagucc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 accaccu-ug ccc(ggaa-) cgguu----g gguaac-cuc uggaaa]--- ---------- 5461 -------gug cau-c-g--- uGAU-G-GGG AUCGAUUAU( UGUAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CAU-GUG (-UCAUCAG- )CCCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-ugaucc- 5641 ggu-gaau-- uau-ucgga- cugc-aa-u- gcau-ucag- ---------- ---------- 5701 -------(uu c-----)--- ---------- ---------- ---------- -cug-gau-- 5761 gcaguc-gcg -ggaa-|guu -uugugaacc uu-acc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG------ -------~|| ||| // LOCUS S.corculor 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L13717 LOCUS SYMRGSS 1793 bp ss-DNA INV 05-APR-1993 DEFINITION Symbiodinium corculorum ribosomal RNA small subunit gene. ACCESSION L13717 KEYWORDS ribosomal RNA small subunit. SOURCE Symbiodinium corculorum (strain 350) DNA. ORGANISM Symbiodinium corculorum Eukaryota; Protista; Dinoflagellata; Dinophyceae; Dinophycidae; Zooxanthellales; Zooxanthellaceae. REFERENCE 1 (bases 1 to 1793) AUTHORS McNally,K.L., Govind,N.S., Thome,P.E. and Trench,R.K. TITLE Small subunit ribosomal DNA sequence analyses and a reconstruction of the inferred phylogeny among symbiotic dinflagellates (Pyrrophyta) JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1793 /standard_name="SSU rRNA" /product="ribosomal RNA small subunit" /evidence="EXPERIMENTAL" misc_feature 1..21 /function="PCR 5'-end primer region" /standard_name="eukaryotic universal primer A" /evidence="EXPERIMENTAL" misc_feature complement(1761..1793) /function="PCR 3'-end primer" /standard_name="eukaryotic universal primer B" /evidence="EXPERIMENTAL" source 1..1793 /organism="Symbiodinium corculorum" /strain="350" /sequenced_mol="DNA" BASE COUNT 477 a 354 c 465 g 497 t ORIGIN BASE COUNT 477 a 354 c 465 g 497 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 ---------- --------au aagcuu--cu ---------- -acac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAG-cagu- uau-aauu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucacugu 301 c>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|guuucu ga|--CCU-A UCA--GCUUC C-GACGGUA- 1141 GG(-GUAUGG G)CCU-ACCG U-|GGCAA-U GAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -gca-(---- ---ucca)-u gu-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-UGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu g-agga-uga ccgguc--c- gc-cuucu-- gggugu-gua ---------- 1801 ---------- -----uc-u- ggcuca-gcu -ugacaucuu ccuaaa-gaa c--------- 1861 guaucug--c a-cuucauug ug----uggu -gc-----gg uauuuaggac ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACCU UG-AGGA--A 2461 AUUAGAGUGU UU-CA-ag-c aagcgau--- ---------- ---------- ---------- 2521 ---------u -gCC-U-UGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUCAG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|--AUU 2821 -UU-GUUGGU -UU-CU---- -----ag-ag CUG-AG-GUA A--UGGUCGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUUA-AAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAGGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gagau-ug gag-g-u-cg cuc-(----- auac-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuua c--auguaac ---------c ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuacaug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggcaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A Ugcgc----- ---------- 5281 ---------- -----[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 gcaaucu-ug ccu(gaaa-) uggcc----g gguaau-cuu uuuaaa]--- ---------- 5461 -------aug cau-c-g--- uGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--ug ag-ugaucc- 5641 ggu-gaau-- uau-ucgga- cuga-cgca- gugc-ucag- ---------- ---------- 5701 -------(cu u-----)--- ---------- ---------- ---------- -cug-gac-- 5761 guugcg-uug -gaaa-|guu -ucaugaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG------ -------~|| ||| // LOCUS S.meandrin 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L13718 LOCUS SYMRGSSA 1796 bp ds-DNA INV 05-APR-1993 DEFINITION Symbiodinium meandrinae ribosomal RNA small subunit gene. ACCESSION L13718 KEYWORDS ribosomal RNA small subunit. SOURCE Symbiodinium meandrinae (strain 130) DNA. ORGANISM Symbiodinium meandrinae Eukaryota; Protista; Dinoflagellata; Dinophyceae; Dinophycidae; Zooxanthellales; Zooxanthellaceae. REFERENCE 1 (bases 1 to 1796) AUTHORS McNally,K.L., Govind,N.S., Thome,P.E. and Trench,R.K. TITLE Small subunit ribosomal DNA sequence analyses and a reconstruction of the inferred phylogeny among symbiotic dinflagellates (Pyrrophyta) JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1796 /standard_name="SSU rRNA" /product="ribosomal RNA small subunit" /evidence="EXPERIMENTAL" misc_feature 1..21 /function="PCR 5'-end primer region" /standard_name="eukaryotic universal primer A" /evidence="EXPERIMENTAL" misc_feature complement(1764..1796) /function="PCR 3'-end primer" /standard_name="eukaryotic universal primer B" /evidence="EXPERIMENTAL" source 1..1796 /organism="Symbiodinium meandrinae" /strain="130" /sequenced_mol="DNA" BASE COUNT 477 a 356 c 464 g 499 t ORIGIN BASE COUNT 477 a 356 c 464 g 499 t 4107 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- a-guca-uau --gcuugucu 61 caaa|-gauu aa-gccaugc a-ugucu-ca gc|------- |--------- ----[----- 121 ---------- --------au aagcuu--cu ------ac-- ---ac-ggc- gaa]------ 181 -----|---a cu|g-cgaa- uggcu-cauu aaag-cagu- uau-aauu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucacugc 301 u>acaugg-a uaacugugg( -u-aauu)cu agagc-uaa- uacaug---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|guuucu ga|--ccu-a uca--gcuuc c-gacggua- 1141 gg(-guaugg g)ccu-accg u-|ggcaa-u gac|gggu-a a-cgga|gaa -u-(uagg-) 1201 guu-ugauu- ccg|gagagg g-agcc(u-g agaaac)ggc uacc-acauc (uaag-)gaa 1261 -ggcagc-a- ---------| ggc-cc-gc- aaauu-accc -aauccu-g( ---aca--)c 1321 aggg-a-ggu -|a|gugaca agaa-au--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------aa caauacagg- -gca-(---- ---ucca)-u gu-cu-ugua a-uuggaau- 1501 ------gagu ----agaauu -uaaa--ccc c-----uu-u a-uga-guau c---->aauu 1561 ggag|gg-ca a-gu-c-ugg u-g(cca-gc -agcc|gc-g gu-aa)uucc a--|cuccaa 1621 u-agcgua|u auuaa--agu uguug-cgg| uua--aaaag cucguaguug |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------- 1741 gauuucuguu g-agga-uga ccgguc--cg c--cuucu-- gggugu-gua ---------- 1801 ---------- -----uc-ug gcucagccu- -ugacaucuu ccuaaa-gaa c--------- 1861 guaucug--c a-cuucauug ug----uggu -gc-----gg uauuuaggac ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --auuuaccu ug-agga--a 2461 auuagagugu uu-ca-ag-c aagcgau--- ---------- ---------- ---------- 2521 ---------u gccu-u--ga auacau-uag cauggaa|UA -AUAAGA-UA -GGACcUCAG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu-au-uu 2821 -u--guuggu -uu-cu---- -----ag-ag CUG-AG-GUA A--UGGUCGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|uagu ---------- 3001 --ugggggca uu|--cguau uuaacug-uc -agag(gu-g aaa---)uuc u-ugga-u-u 3061 uguua-aag- a-cggacu-A CUGC(-GAAA )--GC|A--- uuugcc-aa| gg-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aug ---uuuucau -uga-u|ca- a-gaacgaaa 3301 guuagggga- ucgaggacg( auca------ ---------- ---------- ---------- 3361 ---------- gauac)cg-u -ccuag|ucu ua--acc-au aaacuaugcc AAC|UA|--- 3421 --gagau-ug gag-g-u-cg uu--(---ac ucauac---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g ca-ccuu--- ---------- ----auga(- 3661 gaaa-)uca- -aaguc-uuu gggu|-u|c- cggggggagu au--gg-uc( --gcaa-)gg 3721 cug-aaacuu -aaag--gaa -uug|ac-gg -aa-gggca- -ccac-cagg ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --a-gu|-gg 4021 agccugc-|g cu-uaauuug (acucaa-ca )cggg--gaa acuuaccagg uc[cag-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuu-aa|- ---------- 4321 ---------- ---[ccu-gc uaaauaguua c--auguaac ---------c ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuacaug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggcaa- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------u cuuagagg]- --|------- ---------- gacu-uug-u -g-u(----- 5041 --gucua-)a cgca-a-gga aguu-ugagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cu- 5221 u-gga-uguc cugg-gcugc a-cgcgcgcu acacu--g-a ugcgc----- ---------- 5281 ---------- -----[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 gcaaucu-ug ccu-gaaa-- uggccg---g guaau--cuu uuuaaa]--- ---------- 5461 -------aug cau-c-g--- ugau-g-ggg auagaucau( ugcaauua)u ugaucuuc-a 5521 acgagg-aau u--ccuagua ag-cgc-gag (-ucaucag- )cucgu-g-c -ugauuacg- 5581 u-cccugccc uu|ugua-ca caccgcccgu cgcucc-u-a cc-gau--ug ag-ugaucc- 5641 ggu-gaau-- uau-ucgga- cuga-cgca- gugc-ucag- ---------- ---------- 5701 --------cu u--------- ---------- ---------- ---------- -cug-gac-- 5761 guugcg-uug -gaaa-|guu -ucaugaacc uu-auc-a-c uuag-aggaa gg-agaa-g- 5821 ucguaacaag gu-------- -----u-u-c uguagg(uga a)ccugcaga aggauca--- 5881 --ag~~~~~~ ~~~~~~~~|| ||| // LOCUS Sym.microa 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M88521 LOCUS SYM18SRRNC 1790 bp ss-rRNA RNA 09-APR-1992 DEFINITION Symbiodinium microadriaticum 18S ribosomal RNA. ACCESSION M88521 KEYWORDS 18S ribosomal RNA. SOURCE Symbiodinium microadriaticum rRNA. ORGANISM Symbiodinium microadriaticum Eukaryota; Chromophycota; Dinophyceae; Dinophycidae; Zooxanthellales; Zooxanthellaceae. REFERENCE 1 (bases 1 to 1790) AUTHORS Rowan,R. and Powers,D.A. TITLE Ribosomal RNA sequences and the diversity of symbiotic dinoflagelaates (zooxanthellae) JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3639-3643 (1992) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1790 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial primer_bind 1..29 /note="PCR primer at the 5' end" /gene="18S rRNA" /citation=[1] primer_bind 1761..1790 /note="PCR primer at the 3' end" /gene="18S rRNA" /citation=[1] BASE COUNT 475 a 353 c 465 g 497 t ORIGIN BASE COUNT 475 a 353 c 465 g 497 t 4113 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuu--- ---------- uacac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAG-cagu- uau-aauu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---ucacugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|guuucu ga|--CCU-A UCA--GCUUC C-GACGGUA- 1141 GG(-GUAUGG G)CCU-ACCG U-|GGCAA-U GAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCA-(---- ---ucca)-U GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-UGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu g-aggaugac cgguccgccu ucugggugug caucug-gcu cagccuugac 1801 au-cu---uc cu-aaag-aa cguaucug-c acuucauugu guggugcggu auuuaggac- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACCU UG-AGGA--A 2461 AUUAGAGUGU UU-CA-AG-C AAGCgauu-- ---------- ---------- ---------- 2521 ---------- -GCC-U-UGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUCAG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-uauu 2821 -uu-guuggu -uu-cu---- --ag----ag CUG-AG-GUA A--UGGUCGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUUA-AAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --Gagau-ug gag-g-u-cg uu--(---ac uuauac---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuua c--auguaac ---------- --cu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuacaug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggcaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGC----- ---------- 5281 ---------- -----[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 gcaaucu-ug ccu(gaaa-) ugg-cc---g gguaaucuu- uuuaaa]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- cuga-cgca- gugc-ucag- ---------- ---------- 5701 -------(cu u-----)--- ---------- ---------- ---------- -cug-gac-- 5761 guugcg-uug -gaaa-|guu -ucaugaacc uu-AUC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Sym.pilosu 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X62650 LOCUS SYMSSRRNA 1797 bp ds-DNA PLN 23-JAN-1992 DEFINITION S.pilosum gene for small subunit ribosomal RNA ACCESSION X62650 KEYWORDS primer; small subunit ribosomal RNA. SOURCE Symbiodinium pilosum DNA. ORGANISM Symbiodinium pilosum Eukaryota; Fungi; Chromophycota; Dinophyceae; Dinophycidae; Zooxanthellales; Zooxanthellaceae. REFERENCE 1 (bases 1 to 1797) AUTHORS Medlin,L., Elwood,H.J., Stickel,S. and Sogin,M.L. TITLE The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding JOURNAL Gene 71, 491-499 (1988) STANDARD full automatic REFERENCE 2 (sites) AUTHORS McNally,K.L., Govind,N.S. and Trench,R.K. TITLE Isolation and Sequence analysis of the small subunit ribosomal RNA gene from the euryhaline yeast Debaryomyces hansenii JOURNAL Unpublished (1991) STANDARD full staff_review REFERENCE 3 (sites) AUTHORS McNally,K.L. JOURNAL Unpublished (1991) STANDARD full staff_review COMMENT See also x62649 From EMBL entry SPSSRRNA; dated 12-DEC-1991. FEATURES Location/Qualifiers misc_feature 1..20 /function="PCR 5'end primer" /evidence=EXPERIMENTAL rRNA 7..1794 /product="small subunit RNA" misc_feature complement(1771..1797) /function="PCR 3'end primer" /evidence=EXPERIMENTAL BASE COUNT 478 a 355 c 464 g 500 t ORIGIN BASE COUNT 478 a 355 c 464 g 500 t 4106 others ORIGIN 1 |~~~~~~~~~ ~~~~~~ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--cu ---------- -ac-acggcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAG-cagu- uau-aauu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u cac----ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|guuucu ga|--CCU-A UCA--GCUUC C-GACGGUA- 1141 GG(-GUAUGG G)CCU-ACCG U-|GGCAA-U GAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCA-(---- ---ucca)-U GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----AGAAUU -UAAA--CCC C-----UU-U A-UGA-GUAU C---->AAUU 1561 GUAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucu--g uugag-gaug accgg--ucc g-ccuucugg guguguau-- ---------- 1801 ---------- -cug-gcuca g-ccu-ugac aucuuccu-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- a-aagaacgu a-ucu-gcac 2161 uu----cau- ---------- ---------- -uguguggu- gcgg------ ---------- 2221 ---uauuuag gac------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------AUU UACCUUG-AG GA--AAUUAG 2461 AGUGUUUCA- AG--CAAGCG A--------- ---------- ---------- ---------- 2521 ---uuGCCUU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAGA-UA -GGA---ccu 2581 -cag------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----agag- cug--AGGUA A--UGGUCGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUUA-AAG- A-CGGACU-A CUGC(-GAAA )--G-|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gagau-ug gag-g-u-cg uu--(---ac ucauac---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuucuuga uucuauggg- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuua c--auguaac ---------- --cu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------guu acaugggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-Uug-u -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGC----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 gcaaucu-ug ccu(gaaa-) uggcc----g gguaau-cuu uuuaaa]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-u au-ucgga-c uga-cgca-g u-gcucag-- ---------- ---------- 5701 -------(cu u-----)--- ---------- ---------- ---------c ugga-cguu- 5761 gcg----uug -gaaa-|guu -ucaugaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS P.micans 5903 bp RNA RNA 26-JAN-1986 DEFINITION Prorocentrum micans(Dinoflagellate) 17S. ACCESSION No information KEYWORDS No information. SOURCE Prorocentrum micans(Dinoflagellate) 17S. ORGANISM Prorocentrum micans(Dinoflagellate) 17S. REFERENCE 1 (bases 1 to 1771) AUTHORS No information JOURNAL 8644-8648(1986) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: M14649 Phylo:Eukaryotes,Protozoan BASE COUNT 474 a 360 c 469 g 497 t 4103 others ORIGIN 1 |--------- ------AUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuc-- ---------- uauac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- --ucacucuu 301 u>ACAUGG-A UAACUGUGC( -U-AAUU)GU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gaaucauuc -aa|guuucu ga|--CCU-- UCA--GCUUC C-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCAA-U GAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCA-(---- ---uauc)-U GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----AGAAUU -UAAA--UCC C-----UU-U A-CGA-GUAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucugcc g-aggacgac cgguccgccu -cugggugag uaucug-cuc gccuggcauc 1801 uu-cu---u- ---ggag-aa cguagcuggc acuugacugu guggugcggu auccaggac- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGGA--A 2461 AUUAGAGUGU UU-CA-AG-C CAGUuac--- ---------- ---------- ---------- 2521 ---------- -GCC-U-UGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-uauu 2821 -uu-guuggu -uu-cu---- --ag----ag CUG-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUGgUC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UGUUA-AAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACCAUGCC GAC|UA|--- 3421 --Gagau-ug gag-g-u-cg uu--(---au cuauac---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g ca-cCuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuua c--acguaac ---------- --uc-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuacgug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggcaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-c -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 augaccu-ug ccc(gaua-) ggguuu---g gguaaucuu- uuuaaa]--- ---------- 5461 -------UCG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-- aau-ucgga- cugc-agca- gugu-ucag- ---------- ---------- 5701 -------(uu c-----)--- ---------- ---------- ---------- -cug-aac-- 5761 guugca-gcg -gaaa-|guu -agugaaacc uu-AUC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUC~~~~~ ~~~~~~~~|| ||| // LOCUS (3)-FunMet 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (4)-Fungi 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (5)-Ascomy 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS A.pullulan 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55639 LOCUS AURRR16S 1800 bp ss-rRNA RNA 23-FEB-1991 DEFINITION Aureobasidium pullulans 16S-like ribosomal RNA gene. ACCESSION M55639 KEYWORDS 16S-like rRNA; protist; small subunit rRNA. SOURCE Aureobasidium pullulans (strain Y117) ribosomal RNA. ORGANISM Aureobasidium pullulans Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina; Moniliales. REFERENCE 1 (bases 1 to 1800) AUTHORS Illingworth,C.A., Andrews,J.H., Bibeau,C. and Sogin,M.L. TITLE Phylogeny of Athelia bombacina, Aureobasidium pullulans, and Colletotrichum gloeosporioides estimated from sequence analysis of small subunit ribosomal RNAs JOURNAL Unpublished (1990) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1800 /note="small subunit rRNA" /product="16S-like rRNA" /gene="16S rRNA" BASE COUNT 467 a 388 c 480 g 464 t 1 others ORIGIN BASE COUNT 467 a 388 c 480 g 464 t 4104 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--cu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CUAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cugg ccggu--ccg c-cu--(cac c-)-gcg--- ---------- 1801 ---------- --ug-uacug g------ucc ggccgggccu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--c--gcau gccc(-uuca 2161 cu----)gg- ---------- ---------- -gcgugucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCA UC|--AGUAY UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg U-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-ug uua-(----u cauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc ---ggcccgc ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ggucgc-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auuuccu-ug ccc(ggaa-) ggguu----g gguaau-cuu guuaaa]--- ---------- 5461 -------cuc ugu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGU-ACG (-UCAUCAG- )CGUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUG- 5641 agu-gagg-c cu-ucgga-c ugg-ccca-g gga-ggucg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg acca-ccca- 5761 ggg----ccg -gaaa-|guu -ggucaaacu cc-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-Archia 5903 bp RNA RNA 13-JAN-1999 DEFINITION Archiascomycetes. ACCESSION No information KEYWORDS No information. SOURCE Archiascomycetes. ORGANISM Archiascomycetes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS P.carinii 5903 bp RNA RNA 11-JAN-191 DEFINITION Pneumocystis carinii. ACCESSION No information KEYWORDS No information. SOURCE Pneumocystis carinii. ORGANISM Pneumocystis carinii. REFERENCE Edman, Kovacs, Masur, Santi, Elwood, Sogin AUTHORS No information JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X12708,X14982 Nature 334:519-522(1988) Phylo:Eukaryotes,Fungi,yeast BASE COUNT 486 a 343 c 465 g 510 t 4099 others ORIGIN 1 |--------- -----UACCU GGU(-GA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-guu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u aucu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C GAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CUAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAGA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuua-ggg auugg-uu-g ccugg--u-c c-uccg(aag u-)ugugu-- ---------- 1801 ---------- --g---cacu g-g---cgca acugaucc-u u-ccc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----au 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ua ----ccggcu gccc(-uucg 2161 cu----)gg- ---------- ---------- -gugugccg- gaua------ ---------- 2221 ---g------ ---ccagggc a--------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA---cau 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UUGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-cg ggc-g-a-ug uu--(---uu uuucuu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gc-ucg-g ca-ucuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuc gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG*GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GAA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGcca g--auuagc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gaucgc-g-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guu-g -g-c(----- 5041 --augaa-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag caaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---a------ 5401 uuuuccu-ug gcc(gaaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUAUG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 aau-gagg-u cu-ucgga-c ugg-ugau-g ggu-uauug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -------cga uaag-ccua- 5761 uua----cug -gaaa-|guu -gaucaaauu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.inouyei 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D11377 LOCUS POI6898 2476 bp ds-DNA PLN 06-JUL-1993 DEFINITION Protomyces inouyei DNA. ACCESSION D11377 KEYWORDS 18S rRNA. SOURCE Protomyces inouyei (strain IFO6898) DNA. ORGANISM Protomyces inouyei Eukaryota; Fungi; Ascomycota; Hemiascomycetes; Protomycetales; Protomycetaceae. REFERENCE 1 (bases 1 to 2476) AUTHORS Nishida,H. TITLE 18S rRNA gene of Protomyces inouyei JOURNAL Unpublished (1992) STANDARD full automatic COMMENT These data kindly submitted in computer readable form by: Hiromi Nishida Institute of Applied Microbiology University of Tokyo 1-1-1 Yayoi, Bunkyo-ku Tokyo Japan Phone: 03-3812-2111 x7828 Email: jsugi@tansei.cc.u-tokyo.ac.jp Fax: 03-3818-0444. FEATURES Location/Qualifiers intron 1135..1474 intron 2077..2469 source 1..2476 /organism="Protomyces inouyei" BASE COUNT 669 a 506 c 656 g 645 t ORIGIN BASE COUNT 460 a 350 c 453 g 480 t 4160 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -auac-agug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accc---uac 301 u>ACUUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCC--G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGCUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-uu-g accgg--u-c c-gcc(-uaa cgg)ugug-- ---------- 1801 ---------- -cac-uggcu u--------g accgggcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--cugua-u gucc(-uuua 2161 uu----)gg- ---------- ---------- -gugugcag- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---uAUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGACA UU|--AGUAU UGAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUC-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-ug uu--(--cuu uucuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gc-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG Uc[cag-aca 4081 aagu-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuuug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc g--acuagc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gcucg-cu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --auaaa-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -auuccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-u-a cc-gau--ug aa-uggcuu- 5641 agu-gaga-c cu-ccgga-u uga-cguu-g agc-ugcug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcgg-cucu- 5761 uug----uug -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUA~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.complica 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D12530 ID D12530 unannotated; DNA; UNA; 1736 BP. XX AC D12530; D01174; XX DT 09-JUL-1992 (Rel. 32, Created) DT 09-JUL-1992 (Rel. 32, Last updated, Version 1) XX DE Saitoella complicata rRNA XX KW . XX OS Unknown OC Unclassified. XX RN [1] RP 1-1736 RA Nishida H., Sugiyama J.; RT "The important evolutionary positions of Taphrina wiesneri and RT Saitoella complicata"; RL Unpublished. XX CC Submitted (24-Sep-1992) to DDBJ by: Hiromi Nishida Department of CC Systematics and Taxonomy Institute of Applied Microbiology Tokyo CC University 1-1-1 Yayoi Bunkyou-ku, Tokyo 113 Japan Phone: CC 03-3821-2111 x7828 XX FH Key Location/Qualifiers FH FT rRNA 1..1736 FT /note="'without PCR primers regions'" XX SQ Sequence 1736 BP; 456 A; 351 C; 455 G; 474 T; 0 other; BASE COUNT 456 a 351 c 455 g 474 t 4167 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCC--G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-uc-g gccgg--u-c c-gc--cuca cggu-gug-- ---------- 1801 ---------- ------acug a-c-----cc gaccgggccu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cc-guau gccc(-uuua 2161 cu----)gg- ---------- ---------- -gugugcgg- gaga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCA ---------- ---------- ---------- ---------- 2521 ---uuuGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UGCGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCGC-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-ug uu--(---uu uuucuu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gc-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 ACCGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGcua g--gcccgc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ugucgc-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --aaaaa-)g cuaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-- cu-ccgga-u ugg-cuuu-g aau-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accg-uccg- 5761 ucg----ccg -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG Gn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS S.pombe.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X54866 LOCUS YSPRRNASS 1842 bp ss-mRNA PLN 18-MAY-1991 DEFINITION S. pombe mRNA for 16S-like ribosomal RNA. ACCESSION X54866 KEYWORDS 16S-like ribosomal RNA; ribosomal RNA small subunit. SOURCE Schizosaccharomyces pombe RNA. ORGANISM Schizosaccharomyces pombe Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1842) AUTHORS Sogin,M.L. JOURNAL Unpublished (1990) STANDARD full automatic COMMENT Sequence for the nuclear defined small subunit ribosomal RNA. From EMBL 26 entry SPRRNASS; dated 29-NOV-1990. FEATURES Location/Qualifiers rRNA <1..>1842 /note="coding region for 16S-like rRNA" /product="small subunit ribosomal RNA" BASE COUNT 500 a 356 c 472 g 514 t ORIGIN BASE COUNT 500 a 356 c 472 g 514 t 4061 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaauuuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--caac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-gag ccugg-uc-g acugg--u-c c-gcc-(gca a)ggcgug-- ---------- 1801 ---------- --uu-uacug g-u---caug accggggu-c g-uuaac--- -----c---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----ca 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--uacucau guuc(-uuua 2161 uu----)ga- ---------- ---------- -gcguggua- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCa agu------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|uA -AUAAAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-a-a-ug uu--(---uc auuuauc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCACaAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCUG g--aucagcc --------au uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ggcu gauc-auu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --auaaa-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccaa cgaguug--- ---------- ---------- ---------- 5341 ---------- aaaaaaauc( -uuuu)gauu uuuu------ ---------- ---------- 5401 --auccu-ug gcc(ggaa-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-cugga-u ugg-cuug-u uuc-ugcug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -------cgg cgga-aaca- 5761 uug----ccg -agaa-|guu -ggacaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.pombe.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58056 ID SP18SRNAA standard; DNA; FUN; 1839 BP. XX AC X58056; XX DT 08-DEC-1992 (Rel. 34, Created) DT 08-DEC-1992 (Rel. 34, Last updated, Version 5) XX DE S.pombe gene for 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Schizosaccharomyces pombe (yeast) OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX RN [1] RP 1-1839 RA De Wachter R.; RT ; RL Submitted (22-FEB-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Universiteit Antwerpen (UIA), Universiteitsplein 1, RL 2610 Wilrijk, Belgium XX RN [2] RP 1-1839 RA Hendriks L., Goris A., Van de Peer Y., Neefs J.M., Vancanneyt M., RA Kersters K., Berny J.F., Hennebert G., De Wachter R.; RT "The evolution of ascomycetes and ascomycete-like yeasts as RT inferred from small ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:98-104(1992). XX CC *source: strain=MUCL 30245; CC *source: is_germline=Y; XX FH Key Location/Qualifiers FH FT rRNA <1..>1839 FT /product="18S ribosomal RNA" /gene="18S rRNA" XX SQ Sequence 1839 BP; 499 A; 355 C; 471 G; 514 T; 0 other; BASE COUNT 499 a 355 c 471 g 514 t 4064 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaauuuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--caac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGG--A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-gag ccugg-uc-g acugg--u-c c-gcc-(gca a)ggcgug-- ---------- 1801 ---------- --uu-uacug g-u---caug accggggu-c g-uuaac--- -----c---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----ca 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--uacucau guuc(-uuua 2161 uu----)ga- ---------- ---------- -gcgugguag -gga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCa agu------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|uA -AUAAAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-a-a-ug uu--(---uc auuuauc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCACAAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCUG g--aucagcc --------au uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ggcu gauc-auu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --auaaa-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccaa cgaguug--- ---------- ---------- ---------- 5341 ---------- aaaaaaauc( -uuuu)gauu uuuu------ ---------- ---------- 5401 --auccu-ug gcc(ggaa-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-cugga-u ugg-cuug-u uuc-ugcug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -------cgg cgga-aaca- 5761 uug----ccg -agaa-|guu -ggacaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.pombe.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z19578 ID SP18RRNAA standard; DNA; FUN; 7865 BP. XX AC Z19578; XX DT 01-APR-1993 (Rel. 35, Created) DT 01-APR-1993 (Rel. 35, Last updated, Version 2) XX DE S.pombe gene encoding 18S, 5.8S, and 28S ribosomal RNA. XX KW 18S ribosomal RNA; 28S ribosomal RNA; 5.8S ribosomal RNA. XX OS Schizosaccharomyces pombe (yeast) OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX RN [1] RP 1-7865 RA Lapeyre B., Feliu J.; RT "Complete Nucleotide Sequence of the rDNA Gene from RT Schizosaccharomyces pombe"; RL Unpublished. XX RN [2] RP 1-7865 RA Lapeyre B.; RT ; RL Submitted (13-JAN-1993) on tape to the EMBL Data Library by: RL Lapeyre B., Laboratoire de Biologie Moleculaire Eucaryote, 118, RL Route de Narbonne, Toulouse, FRANCE, 31062 XX CC *source: strain=972; XX FH Key Location/Qualifiers FH FT 5'clip 150..1470 FT /label=ETS FT /citation=[1] FT rRNA 1471..3312 FT /product="18S ribosomal RNA" FT rRNA 3725..3889 FT /product="5.8S ribosomal RNA" FT rRNA 4190..7673 FT /product="28S ribosomal RNA" XX SQ Sequence 7865 BP; 2274 A; 1318 C; 1904 G; 2369 T; 0 other; BASE COUNT 499 a 356 c 473 g 514 t 4061 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcaa-uuu ---------- ugu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--caac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuuu-gag ccugg-uc-g acugg--u-c c-gcc--gca a----ggcgu g--------- 1801 ---------- --uu-uacug g--u--caug accggggu-c g-uuaacc-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----ca 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--uacucau guuc---uuu 2161 auu----ga- ---------- ---------- -gcguggua- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCa agu------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-a-a-ug uu--(---uc auuuauc--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCACaAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGcug g--aucagcc --------au uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ggcu gau-cauu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- ---------- ---------- GACU-Auu-g -g-c(----- 5041 --auaaa-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---------- -----[ccaa cgaguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- -aaaaaaauc uuuugauuuu 5401 uuauccu-ug gcc(ggaa-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------cuc cgu-c-G--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-c cu-cugga-u ugg-cuug-u uuc-ugcug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -------cgg cgga-aaca- 5761 uug----ccg -agaa-|guu -ggacaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Schiz.japo 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z32848 ID SJRIBRNA standard; DNA; FUN; 6492 BP. XX AC Z32848; XX DT 05-MAY-1994 (Rel. 39, Created) DT 05-MAY-1994 (Rel. 39, Last updated, Version 1) XX DE S.japonicus genes for 17S, 5.8S, and 25S ribosomal RNA XX KW 17S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal RNA. XX OS Schizosaccharomyces japonicus (yeast) OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX RN [1] RP 1-6492 RA Naehring J., Kiefer S., Wolf K.; RT "Nucleotide sequence of a complete ribosomal RNA gene cluster of RT Schizosaccharomyces japonicus var. versatilis and its phylogenetic RT implications"; RL Unpublished. XX RN [2] RP 1-6492 RA Wolf K.; RT ; RL Submitted (02-MAY-1994) to the EMBL/GenBank/DDBJ databases. RL Prof. Dr. K. Wolf, Institut fuer Biologie IV, (Mikrobiologie) RL Worringer Weg, 52056 Aachen, XX FH Key Location/Qualifiers FH FT source 1..6492 FT /organism="Schizosaccharomyces japonicus" FT rRNA 549..2370 FT /note="17S rRNA" FT rRNA 2557..2714 FT /note="5.8S rRNA" FT rRNA 2977..6391 FT /note="25S rRNA" XX SQ Sequence 6492 BP; 1783 A; 1229 C; 1644 G; 1836 T; 0 other; BASE COUNT 492 a 349 c 455 g 526 t 4081 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcaa-uuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--caac 301 u>ACUUCC-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CUAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuuu-gaa ccugg-uu-g aucgg--u-c c-gcc--gca a--------- ---------- 1801 ---------- gugu-uacug g--u--uuca accg-ggcuc g-uuaacc-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c---ugucau gcuc---uuc 2161 auu----ga- ---------- ---------- -guguggca- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCa ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--G-|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-a-a-ug uu--(----c uuuuuuu--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-gc-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCACaAUGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGcug g--gucagc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gau-cauu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- ---------- ---------- GACU-Auu-g -g-c(----- 5041 --auaaa-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---------- -----[ccaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ------aaaa aauuuauuuu 5401 uuauccu-ug gcc(ggaa-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------cuc cgu-c-G--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACAAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagu-c uu-uugga-u uga-caug-u uac-ugcug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -------cgg cggu-uucu- 5761 uug----ucg -agaa-|guu -aggcaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.wiesneri 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D12531 ID D12531 unannotated; DNA; UNA; 1741 BP. XX AC D12531; D01175; XX DT 09-JUL-1992 (Rel. 32, Created) DT 09-JUL-1992 (Rel. 32, Last updated, Version 1) XX DE Taphrina wiesneri XX KW . XX OS Unknown OC Unclassified. XX RN [1] RP 1-1741 RA Nishida H., Sugiyama J.; RT "The important evolutionary positions of Taphrina wiesneri and RT Saitoella complicata"; RL Unpublished. XX CC Submitted (24-Sep-1992) to DDBJ by: Hiromi Nishida Department of CC Systematics and Taxonomy Institute of Applied Microbiology Tokyo CC University 1-1-1 Yayoi Bunkyou-ku, Tokyo 113 Japan Phone: CC 03-3821-2111 x7828 XX FH Key Location/Qualifiers FH FT rRNA 1..1741 FT /note="'without PCR primers regions'" XX SQ Sequence 1741 BP; 463 A; 345 C; 451 G; 480 T; 2 other; BASE COUNT 463 a 345 c 451 g 480 t 4164 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---aau 301 u>ACUUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCC--G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGCUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggc cuugg-uu-g accgg--u-c c-gc--cuaa cggu-gug-- ---------- 1801 ---------- -----cacug g-c-----uu gaccgaggcu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--cu-guau ggua(-uuca 2161 uu----)ua- ---------- ---------- -uugugcag- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCU ---------- ---------- ---------- ---------- 2521 ---uauGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGACA UU|--AGUAU UGAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUC-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-ug uu--(---cu uuucuu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gc-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 NNCGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aagu-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuuug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGccc g--accuagc ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggucgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --auaaa-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auuuccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c cu-ccgga-u ugu-cguu-g ggcugcug-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcgg-cccu- 5761 gug----aug -aaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-Euasco 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (7)-Plecto 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS E.albus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M83258 LOCUS ERERR18S 1736 bp ss-rRNA RNA 02-JAN-1992 DEFINITION Eremascus albus 18S ribosomal RNA. ACCESSION M83258 KEYWORDS 18S ribosomal RNA. SOURCE Eremascus albus (library: University of California Berkeley collection 50-026) mycelia, young rRNA. ORGANISM Eremascus albus Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales; Endomycetaceae. REFERENCE 1 (bases 1 to 1736) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence JOURNAL Mol. Biol. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1736 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial BASE COUNT 450 a 366 c 471 g 449 t ORIGIN BASE COUNT 450 a 366 c 471 g 449 t 4167 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-ucu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-uguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--uuac 301 u>ACAUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auc--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUU(---- ---uuac)AA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GUAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gc-(cuca cc-)-gcg-- ---------- 1801 ---------- --ug-cacug g-u----ccg gccggacc-u u-uuc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----ga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--ccua--u ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cuguag-g- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg U-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g-gg uu--(-uaua uaau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUu-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc g--gucgac- ---------g uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gucg gccgc--u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-Auc-g -c-g(----- 5041 ucgucaa-)g gcga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-AAG (-UCAUCAG- )CUUGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuc- 5641 agu-gagg-c cu-ucgga-c ugg-ccca-g gga-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg acca-cccc- 5761 ggg----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS M.purpureu 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M83260 LOCUS MOARR18S 1732 bp ss-rRNA RNA 02-JAN-1992 DEFINITION Monascus purpureus 18S ribosomal RNA. ACCESSION M83260 KEYWORDS 18S ribosomal RNA. SOURCE Monascus purpureus (library: ATCC 16365) mycelia, young rRNA. ORGANISM Monascus purpureus Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Monoascaceae. REFERENCE 1 (bases 1 to 1732) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence JOURNAL Mol. Biol. Evol. (1992) In press STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1732 /product="18S ribosomal RNA" /gene="18S rRNA" /partial BASE COUNT 446 a 384 c 475 g 427 t ORIGIN BASE COUNT 446 a 384 c 475 g 427 t 4171 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------gu aagcaa-uuu ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UACCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACGGG- -GCUC(---- ---uuuc)GG GU-CU-CGUA A-UCGGAAU- 1501 ------GAGA ----ACGACC -UAAA--UAA CCU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gcc-(uca u-)-cgcg-- ---------- 1801 ---------- --ag-uacug g------ucc ggccggaccu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c--ucau ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cugugggg- ggaa------ ---------- 2221 ---c------ ---caggac- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g--g uu--(---uc uaugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC CUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUC-GG|- ---------- 4321 ------(--- --)[CCC--U UAAAUAGCCc ---gguccgc ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg g-ccgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AAGGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUG-CGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggccu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-GAG (-UCAUCAG- )CUCGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c cu-ccgga-c ugg-ccca-g gga-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accc-cccc- 5761 ggg----ccg -gaaa-|gcu -ggucaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS B.nivea 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M83256 LOCUS BYSRR18S 1730 bp ss-rRNA RNA 02-JAN-1992 DEFINITION Byssochlamys nivea 18S ribosomal RNA. ACCESSION M83256 KEYWORDS 18S ribosomal RNA. SOURCE Byssochlamys nivea (library: FRR 2205, CSIRO, food research lab, North Ryde, NSW, Astralia) mycelia, young rRNA. ORGANISM Byssochlamys nivea Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Eurotiaceae. REFERENCE 1 (bases 1 to 1730) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence JOURNAL Mol. Biol. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1730 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial BASE COUNT 442 a 374 c 477 g 437 t ORIGIN BASE COUNT 442 a 374 c 477 g 437 t 4173 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-ucu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---ugc 301 u>ACAUGG-A UACCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UCGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cugg ccggu--c-c g-c--(cuca cc-)-gcg-- ---------- 1801 ---------- --ag-uacug g-u----ccg gcuggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--ccca--u ggcc(-uuca 2161 cu----)gg- ---------- ---------- -ccguggcg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g-ug uu--(--cua ugau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUu-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUC-GG|- ---------- 4321 ------(--- --)[CCC--U UAAAUAGCcc g--guccgc- ---------g uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gcgg -ccgc--u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG---]- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUG-CGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-GAG (-UCAUCAG- )CUCGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuc- 5641 agu-gagg-c cu-ucgga-c ugg-cuca-g ggg-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accg-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.flavus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M83262 LOCUS TALRR18S 1732 bp ss-rRNA RNA 02-JAN-1992 DEFINITION Talaromyces flavus 18S ribosomal RNA. ACCESSION M83262 KEYWORDS 18S ribosomal RNA. SOURCE Talaromyces flavus (sub_species macrospora) (library: Food Research Lab., North Ryde, NSW Australia FRR 2386) mycelia, young rRNA. ORGANISM Talaromyces flavus Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Eurotiaceae. REFERENCE 1 (bases 1 to 1732) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence JOURNAL Mol. Biol. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1732 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial BASE COUNT 440 a 375 c 476 g 441 t ORIGIN BASE COUNT 440 a 375 c 476 g 441 t 4171 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcacucuu ---------- -uu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accc---uac 301 u>ACAUGG-A UACCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cccgu-cc-u gccgg--u-c c-gcc-(uca c-)-cgcg-- ---------- 1801 ---------- --ag-uacug g------ucc ggaugggccu u-ucu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa u--c--ccau ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cuguggcg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-g-gg uu--(--ucu augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUC-GG|- ---------- 4321 ------(--- --)[CCC--U UAAAUAGCCc ---gguccgc ---------g uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg g-ccgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUA-CGUGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-GAG (-UCAUCAG- )CUCGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c cu-ucgga-c ugg-cuca-g agg-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accg-cuca- 5761 gag----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.crustace 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M83263 LOCUS THSRR18S 1718 bp ss-rRNA RNA 02-JAN-1992 DEFINITION Thermoascus crustaceus 18S ribosomal RNA. ACCESSION M83263 KEYWORDS 18S ribosomal RNA. SOURCE Thermoascus crustaceus (library: Food Research Lab., North Ryde, NSW Astralia FRR 1328) mycelia, young rRNA. ORGANISM Thermoascus crustaceus Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Thermoascaceae. REFERENCE 1 (bases 1 to 1718) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence JOURNAL Mol. Biol. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1718 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial BASE COUNT 438 a 371 c 472 g 437 t ORIGIN BASE COUNT 438 a 371 c 472 g 437 t 4185 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nu|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UACCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gcc-(uca c-)-cgcg-- ---------- 1801 ---------- --ag-uacug g------ucc ggcuggaccu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c--ccau ggcc(-uuca 2161 cu----)gg- ---------- ---------- -ccguggcg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g-ug uu--(--ucu augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUC-GG|- ---------- 4321 ------(--- --)[CCC--U UAAAUAGCCc ---ggcccgc ---------g uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg g-ccgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUG-CGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ucag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-AAG (-UCAUCAG- )CUUGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c cu-ucgga-c ugg-cuca-g ggg-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accg-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS A.fumiga.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60300 LOCUS ASNSRSUA 1799 bp ss-rRNA PLN 13-MAR-1991 DEFINITION A.fumigatus small subunit ribosomal RNA. ACCESSION M60300 KEYWORDS small subunit ribosomal RNA. SOURCE A.fumigatus (strain ATCC 36607), cDNA to rRNA. ORGANISM Aspergillus fumigatus Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae. REFERENCE 1 (bases 1 to 1799) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1799 /product="small subunit ribosomal RNA" BASE COUNT 462 a 390 c 492 g 455 t ORIGIN BASE COUNT 462 a 390 c 492 g 455 t 4104 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UACCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACGGG- -GCUC(---- ---uuuu)GG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gc-(cuca cc-)-gcg-- ---------- 1801 ---------- --ag-uacug g-u----ccg gcuggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cu-ca-u ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cugugg-g- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAG G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-g-ug uu--(--ucu augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUC-GG|- ---------- 4321 ------(--- --)[CCC--U UAAAUAGCCC g--guccgc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ggccgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUG-CGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-GAG (-UCAUCAG- )CUCGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuc- 5641 ggu-gagg-c cu-ucgga-c ugg-cuca-g ggg-aguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg acuc-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacc cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS A.fumiga.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60301 LOCUS ASNSRSUB 1750 bp ss-rRNA PLN 13-MAR-1991 DEFINITION A.fumigatus small subunit ribosomal RNA. ACCESSION M60301 KEYWORDS small subunit ribosomal RNA. SOURCE A.fumigatus (strain ATCC 36607) rRNA. ORGANISM Aspergillus fumigatus Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae. REFERENCE 1 (bases 1 to 1750) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1750 /product="small subunit ribosomal RNA" BASE COUNT 410 a 353 c 441 g 421 t 125 others ORIGIN BASE COUNT 410 a 353 c 441 g 421 t 4278 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CNUU AAAu-cagu- uau-cguu-- ----nauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UACCUGUGG( -U-WAUU)CN NGAGC-UNA- UNCAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CYG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- NAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACGGG- -GCUC(---- ---uuuu)GG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gcugg--u-c c-gc-(cuca cc-)-gcg-- ---------- 1801 ---------- --ag-uacun g-u----ccg gcuggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cu-ca-u ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cugugg-g- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|YAG G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-g-ug uu--(--ucu augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)NNn- -nNNNn-nnn nnnn|-n|n- nnnnnnnnnn nn--nn-nn( --nnnn-)nn 3721 nnn-nnnnnn -nnnn--nnn -nnn|nn-nn -nn-nnnnn- -nnnn-nnnn ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --n-nn|-nn 4021 nnnnnnnn|n nn-nnnnnnN (NNNNAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga nugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-NU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUC-GG|- ---------- 4321 ------(--- --)[CCC--U UAAAUAGCCC g--gucngc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg gnscgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUG-CGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GNCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUWA)U UGCUCUUC-A 5521 ACGUGG-AAU G--CCUAGUA GG-CAC-GAG (-UCAUCAG- )CUCGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuc- 5641 ggu-gagg-c cu-ucgga-c ugg-cuca-g ggg-aguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg acuc-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacc cg-guc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS A.fumiga.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55626 LOCUS ASNDA 1798 bp ds-DNA PLN 22-FEB-1991 DEFINITION Aspergillus fumagatus small subunit ribosomal RNA. ACCESSION M55626 KEYWORDS 16S-like ribosomal RNA; small subunit rRNA. SOURCE A.fumagatus DNA and rRNA. ORGANISM Aspergillus fumagatus Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae. REFERENCE 1 (bases 1 to 1798) AUTHORS Sogin,M.L., Bibeau,C., Elwood,H., Stickel,S., Weisburg,W., Barnes,S. and Lane,D.L. TITLE Phylogenetic relationships between major classes of fungi JOURNAL Unpublished (1990) STANDARD simple staff_entry BASE COUNT 462 a 389 c 492 g 455 t ORIGIN BASE COUNT 462 a 389 c 492 g 455 t 4105 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UACCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACGGG- -GCUC(---- ---uuuu)GG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gc-(cuca cc-)-gcg-- ---------- 1801 ---------- --ag-uacug g-u----ccg gcuggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cu-ca-u ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cugugg-g- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-g-ug uu--(--ucu augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUC-GG|- ---------- 4321 ------(--- --)[CCC--U UAAAUAGCcc g--guccgc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ggccgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUG-CGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-GAG (-UCAUCAG- )CUCGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 ggu-gagg-c cu-ucgga-c ugg-cuca-g ggg-aguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg acuc-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacc cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS P.chrysoge 5903 bp RNA RNA 11-JAN-191 DEFINITION Penicillium chrysogenum subsp. synonym misspelled as Penniclium notatum. ACCESSION No information KEYWORDS No information. SOURCE Penicillium chrysogenum subsp. synonym misspelled as Penniclium notatum. ORGANISM Penicillium chrysogenum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55628 LOCUS PNNDA 1797 bp ds-DNA PLN 22-FEB-1991 DEFINITION Penniclium notatum small subunit ribosomal RNA. ACCESSION M55628 KEYWORDS 16S-like ribosomal RNA; small subunit rRNA. SOURCE P.notatum DNA and rRNA. ORGANISM Penniclium notatum Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; Plectomycetes; Eurotiales. REFERENCE 1 (bases 1 to 1797) AUTHORS Sogin,M.L., Bibeau,C., Elwood,H., Stickel,S., Weisburg,W., Barnes,S. and Lane,D.L. TITLE Phylogenetic relationships between major classes of fungi JOURNAL Unpublished (1990) STANDARD simple staff_entry BASE COUNT 469 a 384 c 486 g 457 t 1 others ORIGIN BASE COUNT 469 a 384 c 486 g 457 t 4107 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-cuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UACCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACGGG- -GCUC(---- ---uuuu)GG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CW A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gcc-(uca c-)-cgcg-- ---------- 1801 ---------- --ag-uacug g------ucc ggcuggaccu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c--ucau ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cugugggg- ggaa------ ---------- 2221 ---------- ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g-ga uu--(---cu auaau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUC-GG|- ---------- 4321 ------(--- --)[CCC--U UAAAUAGCcc g--guccgc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ggccgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUG-CGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ua acc(gaga-) gguuu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-GAG (-UCAUCAG- )CUCGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c cu-uggga-u ugg-cuua-g gag-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accc-ccca- 5761 gag----ccg -aaaa-|cuu -ggucaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS T.rubrum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58570 LOCUS TIH18SR 1713 bp ds-DNA PLN 21-DEC-1992 DEFINITION T.rubrum DNA for 18S ribosomal RNA, partial ACCESSION X58570 KEYWORDS 18S ribosomal RNA. SOURCE Trichophyton rubrum DNA. ORGANISM Trichophyton rubrum Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Gymnascales; Gymnoascaceae. REFERENCE 1 (bases 1 to 1713) AUTHORS Bowman,B.H., Taylor,J.W. and White,T.J. TITLE Molecular evolution of the fungi; Human pathogens JOURNAL Mol. Biol. Evol. 9, 893-904 (1992) STANDARD full automatic COMMENT *source: strain=IFO 9185; From EMBL entry TR18SR; dated 26-NOV-1992. FEATURES Location/Qualifiers rRNA <1..>1713 /product="18S ribosomal RNA" /note="missingapprox. 38 bases from 5' and 49 from 3' end ofcoding region" BASE COUNT 436 a 373 c 470 g 434 t ORIGIN BASE COUNT 436 a 373 c 470 g 434 t 4190 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-auu ---------- -gu-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UACCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUc(---- ---uuua)gG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cu-g gccgg--u-c c-guc(--uc ac-)ggcg-- ---------- 1801 ---------- --ug-cacug g-ucc----g gcugggcc-u u-uc------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------cu cuug----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ga a--cccca-u ggcc(-uuca 2161 cu----)gg- ---------- ---------- -ccgugggc- -gga------ ---------- 2221 ---a------ ---ccagggc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCGGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCCG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAG U-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g-gg uu--(---uc uuuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGccc g--gucggc- ---------g ucc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc cggccgcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-c(----- 5041 ---ucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgagucc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggccc----g gguaau-cuu guuaaa]--- ---------- 5461 -------CCC UGU-C-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-AAG (-UCAUCAG- )CUUGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuc- 5641 agu-gagg-c cu-ucgga-c ugg-ccca-g ggagguug-- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- --------cg accg-ccca- 5761 ggg----ccg -gaaa-|guu -ggucaaacu cg-guc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS A.capsulat 5903 bp RNA RNA 11-JAN-191 DEFINITION Ajellomyces capsulatus (Histoplasma capsulatum). ACCESSION No information KEYWORDS No information. SOURCE Ajellomyces capsulatus (Histoplasma capsulatum). ORGANISM Ajellomyces capsulatus (Histoplasma capsulatum). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58572 ID HC18SR standard; DNA; FUN; 1713 BP. XX AC X58572; XX DT 30-OCT-1992 (Rel. 33, Created) DT 30-OCT-1992 (Rel. 33, Last updated, Version 2) XX DE H.capsulatum DNA for 18S ribosomal RNA, partial XX KW 18S ribosomal RNA. XX OS Histoplasma capsulatum OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Hymenomycetes; OC Moniliaceae. XX RN [1] RP 1-1713 RA Bowman B.H.; RT ; RL Submitted (19-MAR-1991) on tape to the EMBL Data Library by: RL B.H. Bowman, Roche Diagnostics Research, 1145 Atlantic Avenue-Suite RL 100, Alameda CA 94501, USA XX RN [2] RP 1-1713 RA Bowman B.H., Taylor J.W.; RT "Convergence in ascospore discharge mechanism among Pyrenomycete RT fungi"; RL Mol. Phylog. Evol. 1:59-71(1992). XX CC *source: strain=ATCC 11408; XX FH Key Location/Qualifiers FH FT rRNA <1..>1713 FT /product="18S ribosomal RNA" /note="missing FT approx. 38 bases from 5' and 49 from 3' end of FT coding region" XX SQ Sequence 1713 BP; 434 A; 368 C; 473 G; 438 T; 0 other; BASE COUNT 434 a 368 c 473 g 438 t 4190 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-ucu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gc-(cuca cc)--gcg-- ---------- 1801 ---------- --ug-cacug g-u----ccg gccggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--c--ucau ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cugugg-g- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCGGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAG U-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g-gg uu--(---cu uaugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCC g--acccgc- ---------g ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ggcc-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug acc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-AAG (-UCAUCAG- )CUUGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuc- 5641 agu-gagg-c cu-ucgga-c ugg-cuca-g ggg-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accg-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS A.dermat.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Ajellomyces (was Blastomyces) dermatitidis. ACCESSION No information KEYWORDS No information. SOURCE Ajellomyces (was Blastomyces) dermatitidis. ORGANISM Ajellomyces (was Blastomyces) dermatitidis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X59420 ID BDRRNA standard; DNA; FUN; 1713 BP. XX AC X59420; XX DT 14-OCT-1992 (Rel. 33, Created) DT 14-OCT-1992 (Rel. 33, Last updated, Version 1) XX DE B.dermatiditis, gene for 18S rRNA XX KW 18S ribosomal RNA; rRNA. XX OS Blastomyces dermatitidis OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina; OC Moniliales. XX RN [1] RP 1-1713 RA Bowman B.; RT ; RL Submitted (08-MAY-1991) on tape to the EMBL Data Library by: RL B. Bowman, Roche Diagnostic Res, 1145 Atlantic Avenue, Suite 100, RL Alameda CA 94501, USA XX RN [2] RP 1-1713 RA Bowman B., Taylor J.W., White T.J.; RT "Molecular evolution of the fungi: human pathogens"; RL Unpublished. XX CC *source: strain=ATCC 21699; XX FH Key Location/Qualifiers FH FT rRNA <1..>1713 FT /product="18S rRNA" /partial /note="missing FT estimated 38 bases from 5' and 49 bases from 3' FT end of rRNA coding region. Directly sequenced from FT full-length PCR product" XX SQ Sequence 1713 BP; 437 A; 367 C; 467 G; 439 T; 3 other; BASE COUNT 437 a 367 c 467 g 439 t 4193 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-ucu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gccu(cac c-)gcgug-- ---------- 1801 ---------- --c---acug g-----uccg gccggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag ----ccccau ggcc(-uuua 2161 cu----)gg- ---------- ---------- -cuguggg-- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCGGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg U-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g-gg uu--(---cu uaugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCc g--ncucgc- ---------g uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcs sgccg-cu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-AAG (-UCAUCAG- )CUUGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c cu-ucgga-c ugg-cuca-g ggg-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accg-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS A.dermat.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Ajellomyces (was Blastomyces) dermatitidis. ACCESSION No information KEYWORDS No information. SOURCE Ajellomyces (was Blastomyces) dermatitidis. ORGANISM Ajellomyces (was Blastomyces) dermatitidis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55624 LOCUS BLODA 1799 bp ds-DNA PLN 22-FEB-1991 DEFINITION Blastomyces dermatitidis small subunit ribosomal RNA. ACCESSION M55624 KEYWORDS 16S-like ribosomal RNA; small subunit rRNA. SOURCE B.dermatitidis DNA and rRNA. ORGANISM Blastomyces dermatitidis Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina; Moniliales. REFERENCE 1 (bases 1 to 1799) AUTHORS Sogin,M.L., Bibeau,C., Elwood,H., Stickel,S., Weisburg,W., Barnes,S. and Lane,D.L. TITLE Phylogenetic relationships between major classes of fungi JOURNAL Unpublished (1990) STANDARD simple staff_entry BASE COUNT 460 a 384 c 491 g 462 t 2 others ORIGIN BASE COUNT 460 a 384 c 491 g 462 t 4106 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-ucu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gccu(cac c-)gcgug-- ---------- 1801 ---------- --c---acug g-----uccg gccggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag ----ccccau ggcc(-uuua 2161 cu----)gg- ---------- ---------- -cuguggg-- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCGGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg U-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU ARACUAUGYC GAC|UA|--- 3421 --gggau-cg gac-g-g-gg uu--(---cu uaugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc g--gcucgc- ---------g uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ggccg-cu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-AAG (-UCAUCAG- )CUUGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c cu-ucgga-c ugg-cuca-g ggg-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accg-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAuCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS A.dermat.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Ajellomyces (was Blastomyces) dermatitidis. ACCESSION No information KEYWORDS No information. SOURCE Ajellomyces (was Blastomyces) dermatitidis. ORGANISM Ajellomyces (was Blastomyces) dermatitidis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M63096 LOCUS BLO18SRRNA 1800 bp ss-rRNA RNA 14-APR-1992 DEFINITION Blastomyces dermatitidis 18S ribosomal RNA. ACCESSION M63096 KEYWORDS 18S ribosomal RNA. SOURCE Blastomyces dermatitidis (library: ATCC 26199) yeast rRNA. ORGANISM Blastomyces dermatitidis Eukaryota; Fungi; Eumycota; Deuteromycotina; Moniliales. REFERENCE 1 (bases 1 to 1800) AUTHORS Geber,A., Waters,A.P., Bennett,J.E. and McCutchan,T.F. TITLE Small subunit ribosomal RNA of Blastomyces dermatitidis: sequence and phylogenetic analysis. JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1800 /product="18S ribosomal RNA" /gene="18S rRNA" misc_feature 1352 /note="G or C polymorphism" /gene="18S rRNA" BASE COUNT 459 a 384 c 490 g 466 t 1 others ORIGIN BASE COUNT 459 a 384 c 490 g 466 t 4104 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-ucu ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gccu(cac c-)gcgug-- ---------- 1801 ---------- --c---acug g-----uccg gccggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag ----ccccau ggcc(-uuua 2161 cu----)gg- ---------- ---------- -cuguggg-- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCGGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg U-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g-gg uu--(---cu uaugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCc s--gcucgc- ---------g uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ggccg-cu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-AAG (-UCAUCAG- )CUUGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c cu-ucgga-c ugg-cuca-g ggg-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg accg-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.immitis 5903 bp RNA RNA 11-JAN-191 DEFINITION Coccidiodes immitis. ACCESSION No information KEYWORDS No information. SOURCE Coccidiodes immitis. ORGANISM Coccidiodes immitis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55627 LOCUS COIDA 1798 bp ds-DNA PLN 22-FEB-1991 DEFINITION Coccidiodes immitis small subunit ribosomal RNA. ACCESSION M55627 KEYWORDS 16S-like ribosomal RNA; small subunit rRNA. SOURCE C.immitis DNA and rRNA. ORGANISM Coccidioides immitis Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina; Hyphomycetes. REFERENCE 1 (bases 1 to 1798) AUTHORS Sogin,M.L., Bibeau,C., Elwood,H., Stickel,S., Weisburg,W., Barnes,S. and Lane,D.L. TITLE Phylogenetic relationships between major classes of fungi JOURNAL Unpublished (1990) STANDARD simple staff_entry BASE COUNT 468 a 379 c 486 g 465 t ORIGIN BASE COUNT 468 a 379 c 486 g 465 t 4105 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -gu-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gcuu(cgc g-)gcgug-- ---------- 1801 ---------- --c---acug g-----uccg gcuggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa ----cccuau ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cuguagg-- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCGGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg U-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-g-gc aa--(---cu uugaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----aac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc g--acccac- ---------g uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gug ggccg-cu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-AAG (-UCAUCAG- )CUUGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c cu-ucgga-c ugg-cuca-g gga-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg acca-ccca- 5761 gag----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS (7)-Pyreno 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS L.persooni 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M83259 LOCUS LEARR18S 1712 bp ss-rRNA RNA 02-JAN-1992 DEFINITION Leucostoma persoonii 18S ribosomal RNA. ACCESSION M83259 KEYWORDS 18S ribosomal RNA. SOURCE Leucostoma persoonii (library: Gerald Adams personla collection, LP8) mycelia, young rRNA. ORGANISM Leucostoma persoonii Eukaryota; Fungi; Eumycota; Ascomycotina; Pyrenomycetes; Diaporthales; Diaporthaceae. REFERENCE 1 (bases 1 to 1712) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence JOURNAL Mol. Biol. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1712 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial BASE COUNT 443 a 380 c 460 g 429 t ORIGIN BASE COUNT 443 a 380 c 460 g 429 t 4191 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------uu aagcac--cu ---------- -aa-acggcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cgua-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGACGGCU- 1141 GG(-GUCUUG G)CCA-GCCG U-|GGUUA-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-UGACC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cu-g gccgg--u-c u-gcc-(uca c-)-cgca-- ---------- 1801 ---------- --ug-cacug g------ucc ggccgggccu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------cu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------au c--c--gcau gccc(-uuca 2161 cu----)gg- ---------- ---------- -gugugucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCA ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCAAUCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-ug uu--(---au uucuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gc-ucg-g ca-ccuu--- ---------- ----acAC(- 3661 GAAA-)GUa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caac-uagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCC ---ggcccgc ---------c cag------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ggucgc-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --cuccu-ug gcc(ggaa-) ggccc----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUUC- 5641 agu-gagg-c gu-ucgga-c ugg-cccc-a gga-ggucg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg acca-ccca- 5761 ggg----ccg -gaaa-|guu -cuccaaacu cg-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS H.chrysosp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M89993 LOCUS HYYRRNA 1736 bp ss-rRNA RNA 25-SEP-1992 DEFINITION Hypomyces chrysospermus partial 18S ribosomal RNA sequence. ACCESSION M89993 KEYWORDS 18S ribosomal RNA. SOURCE Hypomyces chrysospermus mycelia, young rRNA. ORGANISM Hypomyces chrysospermus Eukaryota; Fungi; Eumycota; Ascomycotina; Pyrenomycetes; Hypocreales; Hypocreaceae. REFERENCE 1 (bases 1 to 1736) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Convergence in ascospore discharge mechanism among Pyrenomycete fungi, based on 18S ribosomal RNA gene sequence JOURNAL Mol. Phylog. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA <1..>1736 /note="missing 49 nucleotides at the 3' and 11 at the 5' end compared to J01353" /product="18S ribosomal RNA" /note="putative" /citation=[1] BASE COUNT 449 a 375 c 464 g 448 t ORIGIN BASE COUNT 449 a 375 c 464 g 448 t 4167 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-acggcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAu-aagu- uau-cguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------u acuu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggcucauuc -aa|auuucu uc|--CCU-A UCA--ACUUU -CGAUGUUU- 1141 GG(-GUAUUG G)CCA-AACA U-|GGUGG-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-CGACC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UCGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-UGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cu-g gccgg--u-c c-gc-(cuca cc-)-gcg-- ---------- 1801 ---------- --ug-uacug g-ucc----g gccgggcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------cu cugu----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c-cca-u gccc(-uuca 2161 cu----)gg- ---------- ---------- -guguggcg- ggga------ ---------- 2221 ---a------ ---acaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGCUCAA- GG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uu--(--aca uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUg-cuu gGGC|-U|C- CAGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc g--uauugc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gca guacgcu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgagu-a--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -cucccu-ug gcc(ggaa-) ggccc----g gguaau-cuu guuaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuc- 5641 agu-gagg-c gu-ccgga-c ugg-ccca-g agu-ggugg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu accg-cuca- 5761 ggg----ccg -gaaa-|gcu -cuccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUUGG(UGA A)CCUGCGGn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS M.cirrosus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M89994 LOCUS MIARRNA 1709 bp ss-rRNA RNA 25-SEP-1992 DEFINITION Microascus cirrosus partial 18S ribosomal RNA sequence. ACCESSION M89994 KEYWORDS 18S ribosomal RNA. SOURCE Microascus cirrosus (library: #963 of Univ. of Alberta microfungus collection and herbarium) mycelia, young rRNA. ORGANISM Microascus cirrosus Eukaryota; Fungi; Eumycota; Deuteromycotina; Ascomycetes; Microascales; Microascaceae. REFERENCE 1 (bases 1 to 1709) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Convergence in ascospore discharge mechanism among Pyrenomycete fungi, based on 18S ribosomal RNA gene sequence JOURNAL Mol. Phylog. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA <1..>1709 /note="missing 50 nucleotides at the 3' and 37 at the 5' end compared to J01353" /product="18S ribosomal RNA" /note="putative" /citation=[1] BASE COUNT 435 a 381 c 462 g 431 t ORIGIN BASE COUNT 435 a 381 c 462 g 431 t 4194 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-accgcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAu-aagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------c acgu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu uc|--CCU-A UCA--ACUUU -CGAUGCGA- 1141 GG(-GUCUUG U)CCU-CGCA U-|GGUUG-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-CGACC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUc(---- ---uuua)gG GU-CU-UGUA A-UCGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-UGG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cc-g gccgg--u-c c-cc-(-cuc acc)-ggg-- ---------- 1801 ---------- --ug-cacug a-ucc----g gccgggcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------cu cugu----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--ccca--u ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cugugcgg- ggga------ ---------- 2221 ---a------ ---acaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGCUCCA- GG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgc 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|AA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(----- uuucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-g c-gu-ucg-g ca-ccuu--- ---------- ----ucGA(- 3661 GAAA-)UCa- -aAGUG-cuu gGGC|-U|C- CAGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cagu-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGccc g--uacugc- ---------u cug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc aguucgcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGUU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cu--ccu-ug gcc(gaaa-) ggccc----g gguaau-cuu guuaaa]--- ---------- 5461 -------CCC UGU-C-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuc- 5641 agu-gagg-c cu-ucgga-c ugg-ccca-g agaggcgg-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu gcca-cuca- 5761 ggg----ccg -gaaa-|guu -guccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAAnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.boydii 5903 bp RNA RNA 11-JAN-191 DEFINITION Pseudallescheria boydii. ACCESSION No information KEYWORDS No information. SOURCE Pseudallescheria boydii. ORGANISM Pseudallescheria boydii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M89782 LOCUS PUCRRNA 1726 bp ss-rRNA RNA 25-SEP-1992 DEFINITION Pseudalllescheria boydii partial 18S ribosomal RNA sequence. ACCESSION M89782 KEYWORDS 18S ribosomal RNA. SOURCE Pseudallescheria boydii (library: #4304 of the Univ. of Alberta microfungus collection and herbarium) mycelia, young rRNA. ORGANISM Pseudallescheria boydii Eukaryota; Fungi; Eumycota; Deuteromycotina; Ascomycetes; Microascales; Microascaceae. REFERENCE 1 (bases 1 to 1726) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Convergence in ascospore discharge mechanism among Pyrenomycete fungi, based on 18S ribosomal RNA gene sequence JOURNAL Mol. Phylog. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA <1..>1726 /note="missing 48 nucleotides at the 3' and 22 at the 5' end compared to yeast J01353" /product="18S ribosomal RNA" /note="putative" /citation=[1] BASE COUNT 442 a 378 c 461 g 445 t ORIGIN BASE COUNT 442 a 378 c 461 g 445 t 4177 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-accgcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAu-aagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------c acau---uac 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu uc|--CCU-A UCA--ACUUU -CGAUGCGA- 1141 AG(-GUCUUG U)CUU-CGCA U-|GGUUG-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-CGACC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUc(---- ---uuuu)gG GU-CU-UGUA A-UCGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-UGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cu-g gccgg--u-c c-cc-(-cuc acc)-ggg-- ---------- 1801 ---------- --ug-cacug a-ucc----a gccgggcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------cu cugu----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--ccca--u ggcc(-uuca 2161 cu----)gg- ---------- ---------- -ccguggcg- ggga------ ---------- 2221 ---a------ ---acaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGCUCCA- GG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|AA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(----- uuucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-g c-gu-ucg-g ca-ccuu--- ---------- ----ucGA(- 3661 GAAA-)UCa- -aAGUG-cuu gGGC|-U|C- CAGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cagu-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGccc g--uacugc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc aguucgcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGUU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uu--ccu-ug gcc(ggaa-) ggccc----g gguaau-cuu guuaaa]--- ---------- 5461 -------CUC UGU-C-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuc- 5641 agu-gagg-c cu-ccgga-c ugg-ccca-g agaggugg-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu acca-cuca- 5761 ggg----ccg -gaaa-|guu -guccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUUGG(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS O.stenocer 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M85054 LOCUS OPHRR18SA 1732 bp ss-rRNA RNA 21-JAN-1992 DEFINITION Ophiostoma stenoceras 18S ribosomal RNA. ACCESSION M85054 KEYWORDS 18S ribosomal RNA. SOURCE Ophiostoma stenoceras (strain UCB 57.013) rRNA. ORGANISM Ophiostoma stenoceras Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Ophiostomatales; Ophiostomataceae. REFERENCE 1 (bases 1 to 1732) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE 18S ribosomal RNA gene sequence characters place the human pathogen Sporothrix schenckii in the genus Ophiostoma JOURNAL Exp. Mycol. (1992) In press STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1732 /product="18S ribosomal RNA" /gene="18S rRNA" /partial BASE COUNT 440 a 382 c 465 g 445 t ORIGIN BASE COUNT 440 a 382 c 465 g 445 t 4171 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-accgcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAC-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUg---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGACGGCU- 1141 GG(-GUCUUG G)CCA-GCCA U-|GGUGA-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-CGACC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAU--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cu-g gccgg--u-c c-gcc-(uca c)--cgcg-- ---------- 1801 ---------- --ug-cacug g-u----ccg gccggguc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------cu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--c--gcau gccc(-uuca 2161 cu----)gg- ---------- ---------- -gugugucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uu--(---au uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gu-ucg-g ca-ccuu--- ---------- ----acAC(- 3661 GAAA-)GUac -aAGUU-UCU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AAUCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cgau-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-ucgug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(CU-AA UC)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCC g--cguugc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gca gcgc-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGUU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --cuccu-ug gcc(gaaa-) ggccu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAA- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuc- 5641 agu-gagg-c uu-ccgga-c ugg-ccca-g agg-ggugg- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- --------cu accc-uucc- 5761 ggg----ccg -gaaa-|guu -auccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS O.ulmi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M83261 LOCUS OPHRR18S 1710 bp ss-rRNA RNA 02-JAN-1992 DEFINITION Ophiostoma ulmi 18S ribosomal RNA. ACCESSION M83261 KEYWORDS 18S ribosomal RNA. SOURCE Ophiostoma ulmi (library: ATCC 32437) mycelia, young rRNA. ORGANISM Ophiostoma ulmi Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Ophiostomatales; Ophiostomataceae. REFERENCE 1 (bases 1 to 1710) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence JOURNAL Mol. Biol. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1710 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial BASE COUNT 433 a 383 c 463 g 431 t ORIGIN BASE COUNT 433 a 383 c 463 g 431 t 4193 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-acggcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------c cccu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggcucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGACGGCU- 1141 GG(-AUCUGG G)CCC-GCCA U-|GGUGA-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-CGGCC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAU--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cu-g gccgg--u-c c-gcc-(uca c-)-cgcg-- ---------- 1801 ---------- --ug-cacug g------ucc ggccgggucu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------cu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--c--gcau gccc(-uuca 2161 cu----)gg- ---------- ---------- -gcgugucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------AUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCU ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgc 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uu--(---au uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gu-ucg-g ca-ccuu--- ---------- ----acAC(- 3661 GAAA-)GUac -aAGUU-ucu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cgau-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-ucgug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(CU-AA UC)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCC ---gcgcugc ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gca gcgugc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGUU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ug gcc(gaaa-) ggccu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAA- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c uu-ccgga-c ugg-ccca-g agg-ggugg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu accu-uccc- 5761 ggg----ccg -gaaa-|gcu -auccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAANNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS S.schencki 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M85053 LOCUS OPHRR18SB 1730 bp ss-rRNA RNA 21-JAN-1992 DEFINITION Sporothrix schenckii 18S ribosomal RNA. ACCESSION M85053 KEYWORDS 18S ribosomal RNA. SOURCE Ophiostoma schenckii (library: ATCC 14284) mycelia, young rRNA. ORGANISM Ophiostoma schenckii Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Ophiostomatales; Ophiostomataceae. REFERENCE 1 (bases 1 to 1730) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE 18S ribosomal RNA gene sequence characters place the human pathogen Sporothrix schenckii in the genus Ophiostoma JOURNAL Exp. Mycol. (1992) In press STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1730 /product="18S ribosomal RNA" /gene="18S rRNA" /partial BASE COUNT 437 a 381 c 467 g 445 t ORIGIN BASE COUNT 437 a 381 c 467 g 445 t 4173 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-acagcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUg---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGACGGCU- 1141 GG(-GUCUUG G)CCA-GCCA U-|GGUGA-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-CGACC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAU--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cu-g gccgg--u-c c-gcc-(uca c)--cgcg-- ---------- 1801 ---------- --ug-cacug g-u----ccg gccggguc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------cu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--c--gcau gccc(-uuca 2161 cu----)gg- ---------- ---------- -gugugucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uu--(---au uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gu-ucg-g ca-ccuu--- ---------- ----acAC(- 3661 GAAA-)GUac -aAGUU-UCU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AAUCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cgau-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-ucgug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(CU-AA UC)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCC g--cguugc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gca gcgc-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGUU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --cuccu-ug gcc(gaaa-) ggccu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAA- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuc- 5641 agu-gagg-c uu-ccgga-c ugg-ccca-g agg-ggugg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu accc-uucc- 5761 ggg----ccg -gaaa-|guu -auccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUUGG(UGA A)CCUGCGGn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS G.cingulat 5903 bp RNA RNA 11-JAN-191 DEFINITION Glomerella cingultata subsp. was Colletotrichum gloeosporioides. ACCESSION No information KEYWORDS No information. SOURCE Glomerella cingultata subsp. was Colletotrichum gloeosporioides. ORGANISM Glomerella cingultata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55640 LOCUS COGRR16S 1795 bp ss-rRNA RNA 23-FEB-1991 DEFINITION Colletotrichum gloeosporiodes 16S-like ribosomal RNA gene. ACCESSION M55640 KEYWORDS 16S-like rRNA; protist; small subunit rRNA. SOURCE Colletotrichum gloeosporiodes ribosomal RNA. ORGANISM Colletotrichum gloeosporioides Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina; Coelomycetes; Melanconiales; Melanconiaceae. REFERENCE 1 (bases 1 to 1795) AUTHORS Illingworth,C.A., Andrews,J.H., Bibeau,C. and Sogin,M.L. TITLE Phylogeny of Athelia bombacina, Aureobasidium pullulans, and Colletotrichum gloeosporioides estimated from sequence analysis of small subunit ribosomal RNAs JOURNAL Unpublished (1990) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1795 /note="small subunit rRNA" /product="16S-like rRNA" /gene="16S rRNA" BASE COUNT 464 a 386 c 475 g 470 t ORIGIN BASE COUNT 464 a 386 c 475 g 470 t 4108 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------uu aaauaa--uu ---------- -uu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAu-aagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu uc|--CCU-A UCA--ACUUU -CGAUGCUA- 1141 GA(-GUAGUG U)UCU-AGCA U-|GGUUA-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-CGACC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-UGG| UUA--AAAAG CUCGUAGUAG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccugg-cugg ccggu--ccg c-cu--(cac c-)-gcg--- ---------- 1801 ---------- --ug-cacug g------ucc ggccgggccu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------cu cugu----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c--gcau gccc(-uuca 2161 cu----)gg- ---------- ---------- -gugugccg- ggga------ ---------- 2221 ---a------ ---acaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGCUCCA- GG--CAGGCC ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UUA-U|CA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(----u uuuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUG-cuu gGGC|-U|C- CAGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc ---guauugc ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gca guacgc-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGUU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucccu-ug gcc(ggaa-) ggccg----g gguaau-cuu guuaaa]--- ---------- 5461 -------cuc cgu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUC- 5641 agu-gagg-c uu-ucgga-c ugg-ccca-g aga-ggugg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu acca-cuca- 5761 ggg----ccg -gaaa-|guu -auccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS C.elatum 5903 bp RNA RNA 11-JAN-191 DEFINITION Chaetomium elatum. ACCESSION No information KEYWORDS No information. SOURCE Chaetomium elatum. ORGANISM Chaetomium elatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M83257 LOCUS CEMRR18S 1735 bp ss-rRNA RNA 02-JAN-1992 DEFINITION Chaetomium elatum 18S ribosomal RNA. ACCESSION M83257 KEYWORDS 18S ribosomal RNA. SOURCE Chaetomium elatum (library: University of California Berkeley collection 81-063) mycelia, young rRNA. ORGANISM Chaetomium elatum Eukaryota; Fungi; Eumycota; Ascomycotina; Pyrenomycetes; Sordariales; Sordariaceae. REFERENCE 1 (bases 1 to 1735) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence JOURNAL Mol. Biol. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1735 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial BASE COUNT 449 a 383 c 461 g 442 t ORIGIN BASE COUNT 449 a 383 c 461 g 442 t 4168 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-accgcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGACGGCU- 1141 GG(-GUCUUG G)CCA-GCCG U-|GGUGA-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-CGACC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-AGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ccuag-ccgg ccggu--c-c g-c--(cuca cc-)-gcg-- ---------- 1801 ---------- --ug-cacug g-c----ucg gcuggguc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----ag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cuca--u gccc(-uuca 2161 cu----)gg- ---------- ---------- -gugugacg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUCUG-AA CA--AAUUAG 2461 AUCGCUUAA- AG--AAGGCc ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAU|UA|--- 3421 --gggau-cg gac-g-g-cg uu--(--auu uuuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 UAAA-)UCa- -aaaug-uuu GGGC|-U|C- CUGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cgau-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-ucgug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc g--uauugc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gcag uacgc--u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgagu----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 acucccu-ug gcc(ggaa-) ggccc----g gguaau-cuu guuaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuc- 5641 agu-gagg-c uu-ccgga-c ugg-ccca-g aga-ggucg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg acca-cuca- 5761 ggg----ccg -gaaa-|gcu -auccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCGGn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS N.crassa 5903 bp RNA RNA ~?~???? DEFINITION Neurospora crassa. ACCESSION No information KEYWORDS No information. SOURCE Neurospora crassa. ORGANISM Neurospora crassa. REFERENCE Edman, Kovacs, Masur, Santi, Elwood, Sogin AUTHORS No information JOURNAL N.crassa:who:published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X04971 Phylo:Eukaryotes,Fungi,yeast BASE COUNT 465 a 390 c 478 g 462 t 4108 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------uu aagcaa--uu ---------- -aa-accgcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGACGGCU- 1141 GG(-GUCUUG G)CCA-GCCA U-|GGUGA-C AAC|GGGU-A A-CGGA|GGG -U-(UAGG-) 1201 GCU-CGACC- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-AGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cucgg-cc-g uc-gg--u-c c-gc-(cuca cc-)-gcg-- ---------- 1801 ---------- --ug-cacug a-c----ugg gucgggcc-u u-uuu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cg-ca-u gccc(-uuca 2161 cu----)gg- ---------- ---------- -gugugucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCGUG-AA CA--AAUCAG 2461 AUCGCUCAA- AG--AAGGCc ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GAAUG-UAC -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAU|UA|--- 3421 --gggau-cg gac-g-g-ug uu--(---au uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 UAAA-)UCa- -aAAUG-uuu gGGC|-U|C- CUGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cgau-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-ucgug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc g--uauugc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gca guacgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACAG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucccu-ug gcc(ggaa-) ggucc----g gguaau-cuu guuaaa]--- ---------- 5461 -------cug ugu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuc- 5641 agu-gagg-c uu-ccgga-c ugg-ccca-g gga-ggucg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg acca-ccca- 5761 ggg----ccg -gaaa-|gcu -auccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUUGG(UGA A)CCAGCGGA GGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.anserina 5903 bp RNA RNA 11-JAN-191 DEFINITION Podospora anserina. ACCESSION No information KEYWORDS No information. SOURCE Podospora anserina. ORGANISM Podospora anserina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X54864 LOCUS PANRRNASS 1796 bp ss-mRNA PLN 17-MAY-1991 DEFINITION P. anserina mRNA for 16S-like RNA ACCESSION X54864 KEYWORDS 16S ribosomal RNA small subunit; 16S-like ribosomal RNA. SOURCE Podospora anserina RNA. ORGANISM Podospora anserina Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; Pyrenomycetes; Sordariales; Sordariaceae. REFERENCE 1 (bases 1 to 1796) AUTHORS Sogin,M.L. JOURNAL Unpublished (1990) STANDARD full automatic COMMENT Sequence for the nuclear defined small subunit rRNA coding region. From EMBL 26 entry PARRNASS; dated 29-NOV-1990. FEATURES Location/Qualifiers rRNA 1..1796 /note="coding region for 16S-like ribosomal RNA" /product="small subunit ribosomal rRNA" BASE COUNT 462 a 403 c 477 g 454 t ORIGIN BASE COUNT 462 a 403 c 477 g 454 t 4107 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-acagcg aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auau<----- ---------- ---------- ---------- ---------- -uaccuua-c 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGACGGCU- 1141 GG(-GUCUUG G)CCA-GCCA U-|GGUGA-C AAC|GGGU-A A-CGGG|GAG -U-(UAGG-) 1201 GCU-CGACU- CCG|GAGAAG G-AGCC(U-G AGAAAC)GGC UACU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-AGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cccgg-cc-c uccgg--u-c c-ccc-(uca c)--cggg-- ---------- 1801 ---------- --ug-cacug g-c----ucg gccgggcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----ag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c--gcau gccc(-uuca 2161 cu----)gg- ---------- ---------- -gcgugccg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUCUG-AA CA--AAUUAG 2461 AUCGCUUAA- AG--AAGGCc ---------- ---------- ---------- ---------- 2521 ---UAUGCUC -GAAUA-GUC -UAGCAUGG- AA-----|uA -AUGGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 AAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- G-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAU|UA|--- 3421 --gggau-cg gac-g-g-ug uu--(---au uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ucg-g ca-ccuu--- ---------- ----gcGA(- 3661 UAAA-)UCa- -aAAUG-uuu gGGC|-U|C- CUGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cgau-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-ucgug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCC g--caucgc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg gugcgcc--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 ---ucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucccu-ug gcc(ggaa-) ggccc----g gguaau-cuu guuaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuc- 5641 agu-gagg-c uu-ccgga-c ugg-ccca-g gga-ggucg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg ccaa-ccca- 5761 ggg----ccg -gaaa-|gcu -auccaaacu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUUGG(UGA A)CCAGCGGA GGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-Hemias 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS C.albica.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Candida albicans. ACCESSION No information KEYWORDS No information. SOURCE Candida albicans. ORGANISM Candida albicans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60302 LOCUS YSASRSUA 1787 bp ds-DNA PLN 13-MAR-1991 DEFINITION C.albicans small subunit ribosomal RNA. ACCESSION M60302 KEYWORDS small subunit ribosomal RNA. SOURCE Candida albicans (strain ATCC 18804) DNA. ORGANISM Candida albicans Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1787) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1787 /product="small subunit ribosomal RNA" BASE COUNT 482 a 347 c 461 g 497 t ORIGIN BASE COUNT 482 a 347 c 461 g 497 t 4116 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cuugg-cu-g gccgg--u-c c-auc-(uuu uu-)gaug-- ---------- 1801 ---------- --cg-uacug g-a---ccca gccgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ---------- gcca(--uu- 2161 ua----)ug- ---------- ---------- -gc------- --ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGUA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg guu-g-u-ug uu--(---cu uuuauu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-aa-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-c(----- 5041 --uucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aagccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUG)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-ccgga-u ugg-uuua-g gaa-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cc ucau-ucug- 5761 gaa----ccg -agaa-|gcu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.albica.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Candida albicans. ACCESSION No information KEYWORDS No information. SOURCE Candida albicans. ORGANISM Candida albicans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53497 LOCUS CAL16S 1788 bp RNA PLN 04-OCT-1990 DEFINITION Candida albicans 16S ribosomal RNA ACCESSION X53497 KEYWORDS ribosomal RNA. SOURCE Candida albicans ORGANISM Candida albicans Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1788) AUTHORS De Wachter,R. TITLE Direct Submission JOURNAL Submitted (15-JUN-1990) De Wachter R., University of Antwerp (U.I.A.), Universiteitsplein 1, B-2610 Antwerp, Belgium. STANDARD full automatic REFERENCE 2 (bases 1 to 1788) AUTHORS Hendriks,L., Goris,A., Neefs,J., Van de Peer,Y., Hennerbert,G. and De Wachter,R. TITLE The nucleotide sequence of the small ribosomal subunit RNA of the yeast Candida albicans and the evolutionary position of the Fungi among the eukaryotes JOURNAL Syst. Appl. Microbiol. 12, 223-229 (1989) STANDARD full automatic COMMENT *source: strain=MUCL29800. FEATURES Location/Qualifiers rRNA 1..1788 /note="16S rRNA" BASE COUNT 484 a 346 c 461 g 497 t ORIGIN BASE COUNT 484 a 346 c 461 g 497 t 4115 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auu--)C 1321 AGGGGA-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg cuugg-cu-g gccgg--u-c c-auc-(uuu uuc)gaug-- ---------- 1801 ---------- --cg-uacug g-a----cca gccgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg-----u 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ---------- gcca(--uu- 2161 ua----)ug- ---------- ---------- -gc------- --ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUU 2821 -GU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGUA UC|--AGUAU UCAGAUG-UC GAAAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg guu-g-u-ug uu--(---cu uuuauu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-aa-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC U--GCUAGC- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-c(----- 5041 --uccaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aagccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUG)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-ccgga-u ugg-uuua-g gaa-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-ucug- 5761 gaa----ccg -agaa-|gcu -ggucaaacu ug-GUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.lusita.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60306 LOCUS YSASRSUE 1710 bp ss-rRNA PLN 13-MAR-1991 DEFINITION C.lusitaniae small subunit ribosomal RNA. ACCESSION M60306 KEYWORDS small subunit ribosomal RNA. SOURCE C.lusitaniae (strain ATCC 42720) rRNA. ORGANISM Candida lusitaniae Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1710) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1710 /product="small subunit ribosomal RNA" BASE COUNT 414 a 339 c 428 g 420 t 109 others ORIGIN BASE COUNT 414 a 339 c 428 g 420 t 4302 others ORIGIN 1 |~~~~~~~~~ ~~~~uNAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---ugc 301 u>NAUUS--A UACGCCUGG( -C-NNUU)CU AGAGC-UNA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GN-NA)UUCC AG-|CUCCAA 1621 G-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-gga ggcgc-gu-- gccgg--u-- c-gc--(uua g--)-gcg-- ---------- 1801 ---------- --ag-caccu g-a-----gc ggcgccnc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cucc------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------u cuua(-gca- 2161 a-----)ua- ---------- ---------- -aga------ ---------- ---------- 2221 ---------- ---ggaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UGU UACUUUG-AG UA--AAUGAG 2461 AGUGUUCAA- AG--CAGGCg ---------- ---------- ---------- ---------- 2521 ---CACGCUN -GAAUC-UGU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgc 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UNUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-g-cg uu--(---ca uuuagu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-uUU GGGU|-N|N- NNNNNNNNNN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-NU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU--C UAAAUAGCGC c--gcuagc- ---------c un-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------guc uggcgcgc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----N-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG]---- --|------- ---------- GACU-Auu-g -a-c(----- 5041 --uugaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguug--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---wccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gggaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACNNGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-ccgga-u uug-ucua-a gcc-gagg-- ---------- ---------- 5701 -------(gc nau---)--- ---------- ---------- ---------c cuug-gcgg- 5761 uga----cgg -agaa-|gcu -ggucaaacu un-guc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS C.lusita.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55526 LOCUS YSASRRNAA 1759 bp ds-DNA PLN 03-OCT-1991 DEFINITION Candida lusitaniae small ribosomal subunit RNA gene sequence. ACCESSION M55526 KEYWORDS small ribosomal subunit RNA. SOURCE Candida lusitaniae (strain MUCL 29855) DNA. ORGANISM Candida lusitaniae Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1759) AUTHORS Hendriks,L., Goris,A., Van de Peer,Y., Neefs,J.-M., Vancanneyt,M., Kersters,K., Hennebert,G.L. and De Wachter,R. TITLE Phylogenetic analysis of five medically important Candida species as deduced on the basis of small ribosomal subunit RNA sequences JOURNAL J. Gen. Microbiol. 137, 1223-1230 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers mRNA 1..1759 BASE COUNT 460 a 367 c 480 g 452 t ORIGIN BASE COUNT 460 a 367 c 480 g 452 t 4144 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcau---u ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---ugc 301 u>AAUUGGCA UACGCCUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 G-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-gga ggcgc-cgug ccguc--c-g c-uu--(agg c-)-gagc-- ---------- 1801 ---------- --ac-uggag --------gc ggcgccuc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cu-------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- -------ccu cuua(-gca- 2161 a-----)ua- ---------- ---------- -agagg---- ---------- ---------- 2221 ---------- -----aggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UGU UACUUUG-AG UA--AAUGAG 2461 AGUGUUCAA- AG--CAGGCg ---------- ---------- ---------- ---------- 2521 --cACCGCUU -GAAUC-UGU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgc 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-g-cg uu--(---ca uuuagu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU--C UAAAUAGCGC c--gcuagc- ---------c uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gug cuggcgcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG]---- --|------- ---------- GACU-AUU-G -a-c(----- 5041 --uugaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguug--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---accu-ug gcc(gaga-) ggucu----g ggaaau-cuu gggaaa]--- ---------- 5461 -------cuc cgu-c-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-ccgga-u uug-ucua-a gcc-gag--- ---------- ---------- 5701 -------(gc ac----)--- ---------- ---------- ---------- cuug-gcgg- 5761 uga----cgg -agaa-|gcu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.maltosa 5903 bp RNA RNA 11-JAN-191 DEFINITION Candida maltosa. ACCESSION No information KEYWORDS No information. SOURCE Candida maltosa. ORGANISM Candida maltosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D14593 LOCUS YSASSRR 1784 bp ds-DNA PLN 23-MAR-1993 DEFINITION Candida maltosa gene for small subunit ribosomal RNA. ACCESSION D14593 KEYWORDS small subunet ribosomal RNA. SOURCE Candida maltasa (strain IAM 12247) DNA. ORGANISM Candida maltasa Eukaryota; Fungi; Eumycota; Deuteromycotina. REFERENCE 1 (bases 1 to 1784) AUTHORS Ohkuma,M. JOURNAL Unpublished (1993) STANDARD full automatic COMMENT Submitted (08-MAR-1993) to DDBJ by: Moriya Ohkuma Department of Agricultural Chemistry The University of Tokyo Bunkyo-ku, Tokyo 113 Japan Phone: 03-3812-2111 x3087 Fax: 03-3812-9246. BASE COUNT 481 a 339 c 459 g 503 t 2 others ORIGIN BASE COUNT 481 a 339 c 459 g 503 t 4121 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AA--uc-g( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-NA A-GU-C-UGG G-G(CCA-GN -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AC-GUA|U AUUAA--AGU UAUUG-CAG| UUA--AAAAG CGCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cuugg-uu-g gccgg--u-c c-auc-(uuu uug)gaug-- ---------- 1801 ---------- --cg-uacug g-a---ccca acggagcu-u u-cc------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa ---------- -ccc(-cuu- 2161 gu----)gg- ---------- ---------- -ga------- --ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 UGUGUUCAA- AG--CAUGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGU- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUUGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGUA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--G-|---- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg guu-g-u-ug uu--(---gu ucuuuuuuu) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-aa-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 CAUG-GCG|G CU-UAAUUUG (ACUCAA-CU )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 --uucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aaaccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUU)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCA-- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-ccgga-u ugg-uuua-g gaa-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-ucug- 5761 gaa----ccg -agaa-|gcu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.parapsil 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60307 LOCUS YSASRSUF 1739 bp ss-rRNA PLN 13-MAR-1991 DEFINITION C.parapsilosis small subunit ribosomal RNA. ACCESSION M60307 KEYWORDS small subunit ribosomal RNA. SOURCE C.parapsilosis (strain ATCC 22019) rRNA. ORGANISM Candida parapsilosis Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1739) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1739 /product="small subunit ribosomal RNA" BASE COUNT 441 a 322 c 408 g 460 t 108 others ORIGIN BASE COUNT 441 a 322 c 408 g 460 t 4272 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CNUU AAAu-cagu- uau-cguu-- ----wauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gn-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cuugg-cuug gccgg--u-c c-auc-(uuu uuu)gaug-- ---------- 1801 ---------- --cg-uacug g-a---ccca gccgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ---------- -gcc(-uuu- 2161 uu----)gg- ---------- ---------- -c-------- --ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UGGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UNUU 2821 -UU-GUUNGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGUA UC|--AGUAU UCAGUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg guu-g-u-ug uu--(---cu uuuauu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-aa-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-unn nNNN|-N|N- NNNNNNNNNN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 --uucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aaaccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-ccgga-u ugg-uuua-g aga-agggg- ---------- ---------- 5701 -------(gc wa----)--- ---------- ---------- --------cu ccau-cuug- 5761 gaa----ccg -agaa-|gcu -agucaaacu ag-guc-a-n nnag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS C.tropic.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60308 LOCUS YSASRSUG 1736 bp ss-rRNA PLN 13-MAR-1991 DEFINITION C.tropicalis small subunit ribosomal RNA. ACCESSION M60308 KEYWORDS small subunit ribosomal RNA. SOURCE C.tropicalis (strain ATCC 750) rRNA. ORGANISM Candida tropicalis Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1736) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1736 /product="small subunit ribosomal RNA" BASE COUNT 440 a 320 c 411 g 465 t 100 others ORIGIN BASE COUNT 440 a 320 c 411 g 465 t 4267 others ORIGIN 1 |~~~~~~~~~ ~~~~~NNUCU GGU(UGA)UC CU|GCCAGU- N-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gn-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cuugg-uu-g gccgg--u-c c-auc-(uuu cu-)gaug-- ---------- 1801 ---------- --cg-uacug g-a---ccca accgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ---------- -gcc(--uu- 2161 uu----)gg- ---------- ---------- -c-------- --ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --NGGGGGUA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg guu-g-u-ug uu--(---cu uuuauu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-aa-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-uuu gGGN|-N|N- NNNNNNNNNN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 --uucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aaaccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUG)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-ccgga-u ugg-uuua-g gww-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-ucug- 5761 gaa----ccg -agaa-|gcu -ngucaaacu ug-gnc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS C.tropic.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55527 LOCUS YSASRRNAB 1785 bp ds-DNA PLN 03-OCT-1991 DEFINITION Candida tropicalis small ribosomal subunit RNA gene sequence. ACCESSION M55527 KEYWORDS small ribosomal subunit RNA. SOURCE Candida tropicalis (strain MUCL 30002) DNA. ORGANISM Candida tropicalis Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1785) AUTHORS Hendriks,L., Goris,A., Van de Peer,Y., Neefs,J.-M., Vancanneyt,M., Kersters,K., Hennebert,G.L. and De Wachter,R. TITLE Phylogenetic analysis of five medically important Candida species as deduced on the basis of small ribosomal subunit RNA sequences JOURNAL J. Gen. Microbiol. 137, 1223-1230 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers mRNA 1..1785 BASE COUNT 484 a 348 c 455 g 498 t ORIGIN BASE COUNT 484 a 348 c 455 g 498 t 4118 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cuugg-uu-g gccgg--u-c c-auc-(uuu cu-)gaug-- ---------- 1801 ---------- --cg-uacug g-a---ccca accgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ---------- -gcc(--uu- 2161 uu----)gg- ---------- ---------- -c-------- --ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGUA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAU- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg guu-g-u-ug uu--(---cu uuuauu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-aa-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUC-G -a-u(----- 5041 --uucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aaaccu-ug gcc(gaga-) ggccu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-G--- UGCU-G-GGG AUAGAGCAU( UGUAAUUG)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-ccgga-u ugg-uuua-g gaa-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-ucug- 5761 gaa----ccg -agaa-|gcu -agucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(CGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.viswanat 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60309 LOCUS YSASRSUH 1723 bp ss-rRNA PLN 13-MAR-1991 DEFINITION C.viswanathii small subunit ribosomal RNA. ACCESSION M60309 KEYWORDS small subunit ribosomal RNA. SOURCE C.viswanathii (strain ATCC 22891) rRNA. ORGANISM Candida viswanathii Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1723) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1723 /product="small subunit ribosomal RNA" BASE COUNT 431 a 313 c 404 g 458 t 117 others ORIGIN BASE COUNT 431 a 313 c 404 g 458 t 4297 others ORIGIN 1 |~~~~~~~~~ ~~~~~NAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGANC-- ----->AAUU 1561 GGAG|GG-Cn n-nn-n-nnn n-n(nnn-nn -nnnn|nn-n nn-nA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cuugg-uu-g gccgg--u-c c-auc-(uuu uug)gaug-- ---------- 1801 ---------- --cg-uacug g-a---ccca accgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ---------- -gcc(--uu- 2161 uu----)gg- ---------- ---------- -c-------- --ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGUA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg guu-g-u-ug uu--(---cu uuuauu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-aa-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-nnn GGGN|-N|C- NNGGGGGANN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 --uucaa-)g ucga-U-NGA AGUU-UGAGG CAAUAA--CA NGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aaaccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUU)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCNGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-ccgga-u ugg-uuua-g gaa-agggg- ---------- ---------- 5701 -------(gc nw----)--- ---------- ---------- --------cu ccau-ucug- 5761 gaa----ccg -agaa-|gcu -ggucaaacu ug-gnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS D.albidus 5903 bp RNA RNA 11-JAN-191 DEFINITION Dipodascus albidus. ACCESSION No information KEYWORDS No information. SOURCE Dipodascus albidus. ORGANISM Dipodascus albidus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X69840 LOCUS DA18SRRA 1793 bp DNA PLN 08-AUG-1994 DEFINITION D.albidus gene for 18S rRNA. ACCESSION X69840 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Dipodascus albidus. ORGANISM Dipodascus albidus Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales. REFERENCE 1 (bases 1 to 1793) AUTHORS Wilmotte,A.M. TITLE Direct Submission JOURNAL Submitted (17-DEC-1992) to the EMBL/GenBank/DDBJ databases. A.M. Wilmotte, University of Antwerp (U.I.A.), Dept of Biochemistry, Universiteitsplein 1, 2610 Wilrijk, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 1793) AUTHORS Wilmotte,A.M., Van de Peer,Y., Goris,A., Chapelle,S., De Baere,R., Nelissen,B., Neefs,J.M., Hennebert,G.L. and De Wachter,R. TITLE Evolutionary relationships among higher fungi inferred by small ribosomal subunit RNA sequence analysis JOURNAL Syst. Appl. Microbiol. 16, 436-444 (1993) STANDARD full automatic COMMENT NCBI gi: 529660 FEATURES Location/Qualifiers source 1..1793 /organism="Dipodascus albidus" /strain="MUCL 31469" rRNA 1..1793 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 528 a 313 c 435 g 509 t 8 others ORIGIN BASE COUNT 528 a 313 c 435 g 509 t 4118 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagc-a-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-uguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --uacauuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAgC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CUAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UaCC-ACAUC (CAAG-)GAa 1261 -GGCAGC-A- ---------| GGC-AC-GU- AAAUU-ACCC -AAUCUC-A( ---aca--)C 1321 GAGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GC-c(---- ---uuuu)AG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CAU CUU---AA-C GA-GGAAC-- ----->AAAA 1561 GAAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUUCUU 1621 U-AGUGUA|U AUUAA--AAU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaa------- ---cuugauu uuuggacu-- -------ggg -ga------- ---------- 1801 ---------- ---------- ---------- -------u-- --guu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------u-- -----uuuaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac aaacc----- --uc--agg- 2161 ac-----gg- ---------- ---------- -agau----- ---------- ---------- 2221 ---------- ------cuu- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ----uuuuua guggaauuug cagcuauuua 2341 uuuagcugua gacuaaacua aacau----- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------U UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CA---- ---------- --------ag uauuu----- ---------- 2521 ------gccu -gaauA-AAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --u-acuauu 2821 -uu-guugg- -----uuucu agg----ac- cau---CGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGNA UC|--AGUAU UUAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 AACUA-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ca gaa-g-u-cg ua--(---ca aauuga---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-a c-uu-uug-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aaguu-uuu gggc|-U|C- UGGGGGGAGU AU--GG-UU( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucau gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGCU- ---aacauaa caauuug--- -uu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gug gauuuuua-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----G-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-u -a-u(----- 5041 --gucaa-)a uaga-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGN A-NGNGNGCU ACAAU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---aucu-ga gcc(gaga-) gguuu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCACUAG- )CUUGC-G-U -UGAUUACN- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-ccgga-u uga-uaau-u uun-gaggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu cucu-aaaa- 5761 aug----uug -aaaa-|gcu -agucaaacu un-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS G.geotri.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Galactoomyces geotrichum subsp. was Endomyces geotrichum. ACCESSION No information KEYWORDS No information. SOURCE Galactoomyces geotrichum subsp. was Endomyces geotrichum. ORGANISM Galactoomyces geotrichum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U00974 ID EG974 standard; DNA; FUN; 1719 BP. XX AC U00974; XX DT 28-NOV-1993 (Rel. 37, Created) DT 28-NOV-1993 (Rel. 37, Last updated, Version 1) XX DE Endomyces geotrichum 18S ribosomal RNA gene. XX KW . XX OS Endomyces geotrichum OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales. XX RN [1] RP 1-1719 RA Berbee M.L., Taylor J.W.; RT "Dating the evolutionary radiations of the true fungi"; RL Unpublished. XX RN [2] RP 1-1719 RA Berbee M.L.; RT ; RL Submitted (20-AUG-1993) to the EMBL/GenBank/DDBJ databases. RL Mary L. Berbee, Botany, University of British Columbia, 6270 RL University Blvd, Vancouver, B.C., V6T 1Z4, Canada XX FH Key Location/Qualifiers FH FT rRNA 1..1719 FT /product="18S rRNA" FT source 1..1719 FT /organism="Endomyces geotrichum" FT /dev_stage="mycelium, young" FT /isolate="University of California yeast" XX SQ Sequence 1719 BP; 478 A; 316 C; 443 G; 482 T; 0 other; BASE COUNT 478 a 316 c 443 g 482 t 4184 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~AUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagca---uu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auau<----- ---------- ---------- ---------- ---------- --uacauuac 301 u>acUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UaCC-ACAUC (CAAG-)GAa 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -GCCU(---- ---auu-)AG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGA 1621 U-AGUAUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaa--c-uu- ---------- ---------- -------ggg ---------- ---------- 1801 ---------- ---------- ---------- -------u-- --guu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uag ---agguggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cu cuuuuuagag uacugcguug 2161 aggcaucu-- ---------- ---------- ---uu----- ---------- ---------- 2221 ---------- ------cuu- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- --------ug guguaagcuu uucauuuauu 2341 ugggaagugu aaaccaaaca u--------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------U UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGG-- ---------- ---------- ccuuugcuc- ---------- 2521 ---------- -gaaua-uau -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --u-ucuauu 2821 -uu-guugg- -----uuucu agg----ac- cgu---CGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gag-g-g-cg uu--(---au aau------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----aac-c u-uu-ccg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aaguu-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UU( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucau gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCU- ---guaacaa uaaauu---- auu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------g-u uuugac-a-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----G-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 -uuucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-gu gcc(gaga-) gguau----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-ccgga-u uga-uuag-u ugg-agagg- ---------- ---------- 5701 -------(ga ga----)--- ---------- ---------- --------cu uuuc-ugac- 5761 uga----acg -agaa-|gcu -agucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGC~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS G.geotri.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Galactomyces geotrichum. ACCESSION No information KEYWORDS No information. SOURCE Galactomyces geotrichum. ORGANISM Galactomyces geotrichum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X69842 LOCUS GG18SRRA 1785 bp DNA PLN 08-AUG-1994 DEFINITION G.geotrichum gene for 18S rRNA. ACCESSION X69842 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Galactomyces geotrichum. ORGANISM Galactomyces geotrichum Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales. REFERENCE 1 (bases 1 to 1785) AUTHORS Wilmotte,A.M. TITLE Direct Submission JOURNAL Submitted (17-DEC-1992) to the EMBL/GenBank/DDBJ databases. A.M. Wilmotte, University of Antwerp (U.I.A.), Dept of Biochemistry, Universiteitsplein 1, 2610 Wilrijk, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 1785) AUTHORS Wilmotte,A.M., Van de Peer,Y., Goris,A., Chapelle,S., De Baere,R., Nelissen,B., Neefs,J.M., Hennebert,G.L. and De Wachter,R. TITLE Evolutionary relationships among higher fungi inferred by small ribosomal subunit RNA sequence analysis JOURNAL Syst. Appl. Microbiol. 16, 436-444 (1993) STANDARD full automatic COMMENT NCBI gi: 529654 FEATURES Location/Qualifiers source 1..1785 /organism="Galactomyces geotrichum" /strain="MUCL 28959" rRNA 1..1785 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 499 a 335 c 455 g 495 t 1 others ORIGIN BASE COUNT 499 a 335 c 455 g 495 t 4119 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagca---uu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auau<----- ---------- ---------- ---------- ---------u acau---uac 301 u>acUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguugauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UaCC-ACAUC (CAAG-)GAa 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -GCCU(---- ---auu-)AG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGA 1621 U-AGUAUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaa------- ----cuuggg uguguag--- -------ggg c--------- ---------- 1801 ---------- ggucucu--- ---------- ---------- ---uu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uag ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- aguacuaccc ugaaacaucu 2161 ---------- ---------- ---------- ---uu----- ---------- ---------- 2221 ---------- ------cuu- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- --------ug guguaaacuc uuuauucacu 2341 uaaggagugu aaaccaaaca u--------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------U UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGG-- ---------- ---------- ccuuugcuc- ---------- 2521 ---------- -gaaua-uau -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --u-ucuauu 2821 -uu-guugg- -----uuucu agg----ac- cgu---CGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-UUU 3061 AACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAAGU|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gag-g-g-cg uu--(---au aau------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----aac-c u-cu-ccg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aaguu-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UU( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucau gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCU- ---guaacaa uagauu---- auu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------g-u uuugac-a-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----G-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 -uuucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-gu gcc(gaga-) gguau----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-ccgga-u uga-uuaa-c ugg-agagg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu uuuc-uggu- 5761 uga---accg -agaa-|gcu -agucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Y.lipolyti 5903 bp RNA RNA 11-JAN-191 DEFINITION Yarrowia lipolytica. ACCESSION No information KEYWORDS No information. SOURCE Yarrowia lipolytica. ORGANISM Yarrowia lipolytica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60312 LOCUS YSJSRSUA 1618 bp ss-rRNA PLN 13-MAR-1991 DEFINITION Y.lipolytica small subunit ribosomal RNA. ACCESSION M60312 KEYWORDS small subunit ribosomal RNA. SOURCE Y.lipolytica (strain ATCC 18942) rRNA. ORGANISM Yarrowia lipolytica Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1618) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1618 /product="small subunit ribosomal RNA" BASE COUNT 420 a 313 c 384 g 402 t 99 others ORIGIN BASE COUNT 420 a 313 c 384 g 402 t 4384 others ORIGIN 1 |~~~~~~~~~ ~~~~~NAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-NNU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au naacaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --uu---uuc 301 u>ACAUGG-A UAACCGUGA( -U-AACU)UC AGAAC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- --<------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- --acagcc-- ----(----- ---------u ucu------- 601 ---------- ---------- ---)-----g gc----|GUA UAUAUUAGA- -UACA-A--- 661 ACCAA----- ---------- --------(- ---------- ---------- ---------- 721 ------cagu -)-------- ---------- ---------- ------aUGG UG--AUUCAU 781 A-AUAUCUU- -GUC------ ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|GAA-CCGA --------(- ---ucu---- ---------- -------)-- ----U-CGGU 1081 ---------> -guaucauuc -aa|auuucu gc|--CCU-A UCA--ACUGU -CGAUGGUA- 1141 GG(-AUCGUG G)CCU-ACCA U-|GGUAA-C AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CUAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UnCC-ACAUC (CAAG-)GAn 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acw--)C 1321 AGGG-A-GGU -|A|GUGACA AUAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUCCGGG- -GCUC(---- ---uuu-)GA GU-UU-CGGA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CAC CUU---AA-C GA-GGWNC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G NN-NA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--UGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaauug-gg- ---------- ---------- ------cggg cua------- ---------- 1801 ---------- ---------- ---------- -------u-u a-guu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uag gcc------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------g cuuc(-agg- 2161 aa----)ga- ---------- ---------- -acuu----- ---------- ---------- 2221 ---------- ------cuuc c--------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------AGU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- CG--CAGGU- ---------- ---------- ---------- ---------- 2521 ---UUCGCCU -GAAUA-UAU -UUGCAUGG- AA-----|UA -ACAUAA-CU -CGA---cg- 2581 aggg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uc|-CAUU 2821 -UU-GUUGGC -UU-GC---- -----AAAC- CCA---CGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UGUGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACAC-AAG- A-CUAACU-A CUGC(-GANA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUCAU -UAA-U|CA- A-GANCGAAA 3301 GUUAGGGGA- UCAAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-GU AAACUAUGCC GAC|UG|--- 3421 --agaau-gg gua-c-c--g ----(----c uuaua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------cg-g u-au-ccg-c gc-ucu---- ---------- ----acGA(- 3661 GAAA-)UCA- -aaggugaUC AGGU|-U|C- UGGGGGGAGN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga ungacaga(u ugauagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GN- NGU-G-CAUG |GCC|GU-UC NUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-GA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGCUC u--acuugc- ---------g auu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gca gguagcua-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----G-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-u -a-u(----- 5041 --uacaa-)g uaga-U-GGA AGUU-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgagucg--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---acca-ag ccc(gaga-) gggcu----a gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-n-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCNGU CGCUAC-U-A CC-GAU--UG AA-UGGuuu- 5641 agu-gaga-c cu-uggga-g ggc-gaga-u gag-gggg-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------c cccn-nuug- 5761 aac----auc -caaa-|cuu -ggucaaacu nn-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS D.hansen.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X62649 LOCUS DEB17SDNA 1810 bp ds-DNA PLN 23-JAN-1992 DEFINITION D.hansenii 17S rDNA ACCESSION X62649 KEYWORDS 17S ribosomal RNA; primer. SOURCE Debaryomyces hansenii DNA. ORGANISM Debaryomyces hansenii Fungi; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1810) AUTHORS Medlin,L., Elwood,H.J., Stickel,S. and Sogin,M.L. TITLE The characterization of enzymatically amplified eukaryotic 16S-like rRNA coding JOURNAL Gene 71, 491-499 (1988) STANDARD full automatic REFERENCE 2 (sites) AUTHORS McNally,K.L., Govind,N.S. and Trench,R.K. TITLE Isolation and Sequence analysis of the small subunit ribosomal RNA gene from the euryhaline yeast Debaryomyces hansenii JOURNAL Unpublished (1991) STANDARD full staff_review REFERENCE 3 (sites) AUTHORS McNally,K.L. JOURNAL Unpublished (1991) STANDARD full staff_review COMMENT *source: strain=NRRL Y-7426; *source: haplotype=haploid; *source: stage=freshwater; See also x62650 From EMBL entry DH17SDNA; dated 12-DEC-1991. FEATURES Location/Qualifiers misc_feature 1..27 /function="PCR 5'end primer" /evidence=EXPERIMENTAL rRNA 7..1805 /product="17S ribosomal RNA" misc_feature complement(1782..1810) /function="PCR 3'end primer" /evidence=EXPERIMENTAL BASE COUNT 485 a 357 c 463 g 505 t ORIGIN BASE COUNT 485 a 357 c 463 g 505 t 4093 others ORIGIN 1 |--------g ucgacAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--uuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUg---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCU(---- ---uuc-)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cuugg-uu-g gccgg--u-c c-gcc-(uuu uu)-ggcg-- ---------- 1801 ---------- --ag-uacug g-a---ccca accgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c---uuu cgcc(-cuu- 2161 gu----)gg- ---------- ---------- -uguuu--g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|ccgg u--------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 ACCUG-AAG- A-CUAACU-A CUGC(-GAAA )--G-|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-u-ug uu--(---cu uuuuuuu--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC u--gcuagc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 --uucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-c cu-ccgga-u ugg-uuua-a aga-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-cuug- 5761 gaa----ccg -aaaa-|gcu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --agcuu~~~ ~~~~~~~~|| ||| // LOCUS D.hansen.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58053 ID DH18SRRNA standard; DNA; FUN; 1800 BP. XX AC X58053; XX DT 08-DEC-1992 (Rel. 34, Created) DT 08-DEC-1992 (Rel. 34, Last updated, Version 2) XX DE D.hansenii gene for 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Debaryomyces hansenii OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX RN [1] RP 1-1800 RA De Wachter R.; RT ; RL Submitted (22-FEB-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Universiteit Antwerpen (UIA), Universiteitsplein 1, RL 2610 Wilrijk, Belgium XX RN [2] RP 1-1800 RA Hendriks L., Goris A., Van de Peer Y., Neefs J.M., Vancanneyt M., RA Kersters K., Berny J.F., Hennebert G., De Wachter R.; RT "The evolution of ascomycetes and ascomycete-like yeasts as RT inferred from small ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:98-104(1992). XX CC *source: strain=MUCL 29826; CC *source: is_germline=Y; XX FH Key Location/Qualifiers FH FT rRNA <1..>1800 FT /product="18S ribosomal RNA" /gene="18S rRNA" XX SQ Sequence 1800 BP; 481 A; 353 C; 462 G; 504 T; 0 other; BASE COUNT 481 a 353 c 462 g 504 t 4103 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--uuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg cuugg-uu-g gccgg--u-c c-gcc-(uuu uu)-ggcg-- ---------- 1801 ---------- --ag-uacug g-a---ccca accgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c---uuu cgcc(-cuu- 2161 gu----)gg- ---------- ---------- -uguuu--g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 ACCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-u-ug uu--(---cu uuuuuu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CCG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCuu-aa|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC u--gcuagc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 --uucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gagg-c cu-ccgga-u ugg-uuua-a aga-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu c-au-cuug- 5761 gaa----ccg -aaaa-|gcu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS D.bruxelle 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58052 ID BB18SRRNA standard; DNA; FUN; 1799 BP. XX AC X58052; XX DT 08-DEC-1992 (Rel. 34, Created) DT 08-DEC-1992 (Rel. 34, Last updated, Version 2) XX DE D.bruxellensis gene for 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Dekkera bruxellensis OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales. XX RN [1] RP 1-1799 RA De Wachter R.; RT ; RL Submitted (22-FEB-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Universiteit Antwerpen (UIA), Universiteitsplein 1, RL 2610 Wilrijk, Belgium XX RN [2] RP 1-1799 RA Hendriks L., Goris A., Van de Peer Y., Neefs J.M., Vancanneyt M., RA Kersters K., Berny J.F., Hennebert G., De Wachter R.; RT "The evolution of ascomycetes and ascomycete-like yeasts as RT inferred from small ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:98-104(1992). XX CC *source: strain=MUCL 27700; CC *source: is_germline=Y; XX FH Key Location/Qualifiers FH FT rRNA <1..>1799 FT /product="18S ribosomal RNA" /gene="18S rRNA" XX SQ Sequence 1799 BP; 479 A; 359 C; 483 G; 478 T; 0 other; BASE COUNT 479 a 359 c 483 g 478 t 4104 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u ucau---uac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU GUGGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -a -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U UAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---auac)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacguu-ggg cuucg-gg-g gccgg--u-c c-gcc-(auu c-)-ggag-- ---------- 1801 ---------- --u---acug g-gua-accg cccgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- -------ggc uucc(-uuc- 2161 g-----)gg- ---------- ---------- --cguu---- --ga------ ---------- 2221 ---a------ ---ccaggau ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-GAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-g-ag uu--(cuuuu ucuaaua--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUG- g--agccagc gac-----uu uag------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------cu ggaggauc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACC-Auc-g -g-u(----- 5041 --gucaa-)g ccga-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uagccu-ug gcc(gaga-) ggucu----g gguaau-cuu gagaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGGAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAG-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gagg-c cu-cagga-u ugg-accu-g gga-agggg- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- --------cc cuca-ccug- 5761 gga----ccg -agaa-|uuu -ggacaaacu ug-guc-a-u uuag-AGGAA CU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAG-(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS I.orient.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Issatchenkia orientalis. ACCESSION No information KEYWORDS No information. SOURCE Issatchenkia orientalis. ORGANISM Issatchenkia orientalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60305 LOCUS YSASRSUD 1696 bp ss-rRNA PLN 13-MAR-1991 DEFINITION C.krusei small subunit ribosomal RNA. ACCESSION M60305 KEYWORDS small subunit ribosomal RNA. SOURCE C.krusei (strain ATCC 6258) rRNA. ORGANISM Candida krusei Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1696) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1696 /product="small subunit ribosomal RNA" BASE COUNT 421 a 334 c 419 g 418 t 104 others ORIGIN BASE COUNT 421 a 334 c 419 g 418 t 4311 others ORIGIN 1 |--------- ----uNAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUNGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcau---u ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-NAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u uccg---uuc 301 u>ACAUGG-A UAACCGUGG( -A-AAU-)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-G CAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UnCC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- NAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCC-(---- ---uuu-)-G GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GN-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg ccugg-gc-g gacgg--u-c u-acc-(uau -)--ggua-- ---------- 1801 ---------- --ag-cacug u-u----gcg gccggguc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ---------- --sc(-cu-- 2161 cg----)gg- ---------- ---------- -c-------- --ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GAU UACUUUG-AG GA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgc 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUNGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAANGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-g-ug cu--(---ac unn------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----g-c-c c-ac-ucg-g ca-ccun--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGNN-nnn nnnn|-n|n- nnnnnnnnnn nn--nn-nn( --nnnn-)nn 3721 nnn-nnnnnn -nnnn--nnn -nnn|nn-nn -nn-nnnnn- -nnnn-nnnn ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --n-nn|-nn 4021 nnnnnnnn|n nn-nnnnnnn (nnnNAA-CA )CGGG--GAA ACUCACCAGG UC[cag-acg 4081 uaau-aagga uugacaag(u u-agaga)-- --cuucucuu gauc-uuacg gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-NU- NGU-G-CAUG |GCC|GN-NN UUA|GUCCU- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GGACGAG ACCUN-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGGC u--gcgagc- ---------a ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu cggg--ug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cU-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -g-u(----- 5041 --aucaa-)a ccca-U-GGA AGUU-UGAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag caagucc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-ug guc(gaga-) ggccc----g gguaau-cuc gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUU)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCNGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-caaga-u ugg-cgcc-g cgg-gaggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu uucc-caug- 5761 ggg----ccg -agaa-|ucu -agucaaacu ug-guc-a-u uuag-AGGnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS I.orient.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Issatchenkia orientalis. ACCESSION No information KEYWORDS No information. SOURCE Issatchenkia orientalis. ORGANISM Issatchenkia orientalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55528 LOCUS YSASRRNAC 1765 bp ds-DNA PLN 03-OCT-1991 DEFINITION Candida krusei small ribosomal subunit RNA gene sequence. ACCESSION M55528 KEYWORDS small ribosomal subunit RNA. SOURCE Candida krusei (strain MUCL 29849) DNA. ORGANISM Candida krusei Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1765) AUTHORS Hendriks,L., Goris,A., Van de Peer,Y., Neefs,J.-M., Vancanneyt,M., Kersters,K., Hennebert,G.L. and De Wachter,R. TITLE Phylogenetic analysis of five medically important Candida species as deduced on the basis of small ribosomal subunit RNA sequences JOURNAL J. Gen. Microbiol. 137, 1223-1230 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers mRNA 1..1765 BASE COUNT 462 a 365 c 474 g 464 t ORIGIN BASE COUNT 462 a 365 c 474 g 464 t 4138 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcau---u ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u uccg---uuc 301 u>ACAUGG-A UAACCGUGG( -A-AAAU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U CAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCC------ ---uuu-)-G GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg ccugg-gc-g gacgg--u-c u-acc-(uau -)--ggua-- ---------- 1801 ---------- --ag-cacug u-u----gcg gccggguc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ---------- -gcc(-cu-- 2161 cg----)gg- ---------- ---------- -c-------- --ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GAU UACUUUG-AG GA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgc 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-g-ug cu--(---ac uuu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----g-c-c c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-acg 4081 uaau-aagga uugacaag(u u-agaga)-- --cuucucuu gauc-uuacg gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UU UUA|GUCCU- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GGACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGGC u--gcgagc- ---------a ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu cggg--ug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cU-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUG-G -g-u(----- 5041 --aucaa-)a ccca-U-GGA AGUU-UGAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag caagucc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-ug guc(gaga-) ggccc----g gguaau-cuc gugaaa]--- ---------- 5461 -------cuc cgu-c-G--- UGCU-G-GGG AUAGAGCAU( UGUAAUUU)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-caaga-u ugg-cgcc-g cgg-gaggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu uucc-caug- 5761 ggg----ccg -agaa-|ucu -agucaaacu ug-guc-a-u uuag-AGGUC GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS K.lactis 5903 bp RNA RNA 11-JAN-191 DEFINITION Kluyveromyces lactis. ACCESSION No information KEYWORDS No information. SOURCE Kluyveromyces lactis. ORGANISM Kluyveromyces lactis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X51830 X51830 Kluyveromyces lactis 17S rRNA. From EMBL Status: R DT 21-MAR-1990 (annotation) XX DE Kluyveromyces lactis 17S rRNA gene XX KW 17S ribosomal RNA; ribosomal RNA. XX OS Kluyveromyces lactis (yeast) OC Eukaryota; Planta; Mycophyta; Ascomycetes. XX RN [1] (bases 1-1793) RA Maleszka R.; RT ; RL Submitted (12-FEB-1990) on tape to the EMBL Data Library by: RL Maleszka R., Molecular & Population Genetics Group, Research School RL of Biological Sciences, Australian National University, G P O Box RL 475, Canberra A C T 2601, Australia. XX RN [2] (bases 1-1793) RA Maleszka R., Clark-Walker G.D.; RT "Nucleotide sequence of the 17S rRNA gene from Kluyveromyces RT lactis"; RL Unpublished. BASE COUNT 481 a 352 c 458 g 502 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u uccu--uuac 301 u>ACAUGG-A UAUCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---auuc)GG -U-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg ucugg-uu-g uccgg--u-c c-ga--(cuu uau)gucg-- ---------- 1801 ---------- --cg-cacug g-u---uuuc aaccggaucu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c---ugu acuc(-cuu- 2161 gu----)gg- ---------- ---------- -gugca--g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg ---------- ---------- ---------- ---------- 2521 ---AAAGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUGGAA-UA -GGA---cgu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-g-ug uu--(---uu ucuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUagggu u--gcuggc- ---------a cuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcc ggu-ug-a-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cu-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCG- A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-ug gcc(gaga-) ggucu----g cguaau-cuu gugaac]--- ---------- 5461 -------cuc cgu-c-g--- uGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAG-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-cagga-u uug-cuua-g aga-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-cuca- 5761 gag----cga -agaa-|ucu -ggucaaacu ug-guc-a-u uuag-AGGAA CU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)-CUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS K.marxianu 5903 bp RNA RNA 11-JAN-191 DEFINITION Kluyveromyces marxianus. ACCESSION No information KEYWORDS No information. SOURCE Kluyveromyces marxianus. ORGANISM Kluyveromyces marxianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60303 LOCUS YSASRSUB 1747 bp ss-rRNA PLN 13-MAR-1991 DEFINITION C.kefyr small subunit ribosomal RNA. ACCESSION M60303 KEYWORDS small subunit ribosomal RNA. SOURCE Candida kefyr (strain ATCC 4235) rRNA. ORGANISM Candida kefyr Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1747) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1474 /product="small subunit ribosomal RNA" BASE COUNT 437 a 322 c 410 g 466 t 112 others ORIGIN BASE COUNT 437 a 322 c 410 g 466 t 4268 others ORIGIN 1 |--------- -----NAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au nagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---W CU|G-CGAA- UGGCU-NNNU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u uccu--uuac 301 u>ACAUGG-A UAUCUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---auuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G NN-NA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg ucugg-uu-g gccgg--u-c c-gau-(uuu au)-gucg-- ---------- 1801 ---------- -cgc-acugg u-u---uuca accggauc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c---ugu acuc(-cuu- 2161 gu----)gg- ---------- ---------- -gugca--g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg ---------- ---------- ---------- ---------- 2521 ---AAAGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUGGAA-UA -GGA--cguu 2581 -ugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UNUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGNA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-g-ug uu--(---uu ucuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-unU GGGN|-N|N- NNNNNNNNNN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GN- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGGGU u--gcuagc- ---------n cuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguuna---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cU-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA NGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GNCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-ug gcc(gaga-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACNAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAG-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-cagga-u uug-cuua-g aga-agggg- ---------- ---------- 5701 -------(gc aw----)--- ---------- ---------- --------cu ccau-cuca- 5761 gag----cga -aaaa-|ucu -ggucaaacu ug-guc-a-u uuag-AGGAn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.angusta 5903 bp RNA RNA 11-JAN-191 DEFINITION Pichia angusta subsp. was Hansenula polymorpha. ACCESSION No information KEYWORDS No information. SOURCE Pichia angusta subsp. was Hansenula polymorpha. ORGANISM Pichia angusta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60310 LOCUS HASSRSUA 1748 bp ss-rRNA PLN 13-MAR-1991 DEFINITION H.polymorpha small subunit ribosomal RNA. ACCESSION M60310 KEYWORDS small subunit ribosomal RNA. SOURCE H.ploymorpha (strain ATCC 34438) rRNA. ORGANISM Hansenula polymorpha Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1748) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1748 /product="small subunit ribosomal RNA" BASE COUNT 436 a 324 c 400 g 470 t 118 others ORIGIN BASE COUNT 436 a 324 c 400 g 470 t 4273 others ORIGIN 1 |~~~~~~~~~ ~~~nuUAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UNU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-NNUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u uccu--uuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -nguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUUuC AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CYG|GAGAGG G-AKCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-n GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUN--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-uu-a gccgg--u-c u-gccu(uuu uu)-ggca-- ---------- 1801 ---------- --cg-uacug g-a---uuua accgggcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa -------cca acac(-ucu- 2161 ------)gu- ---------- ---------- -guugg---- -caa------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggaa-cg ggu-g-g-ug uu--(---uc uuuuuu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUN-nnn nNNN|-N|N- NNNNNNNNNN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNNN-NA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ncuuucun ganu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- NGU-G-CAUG |GCC|GUUUC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGA u--auuggc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gau-uu-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA NGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccaa cgagcuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uauccu-ug acc(gaga-) ggucc----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUNCCC UU|UGUA-CA CACCGCCCNU CGCUAG-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c uu-cagga-u ugg-uuca-g aga-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-cuug- 5761 gaa----ccg -agaa-|ucu -agucaaacu nn-guc-a-u uuag-AGGAA nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.anomala 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58054 ID PA18SRNAA standard; DNA; FUN; 1796 BP. XX AC X58054; XX DT 08-DEC-1992 (Rel. 34, Created) DT 08-DEC-1992 (Rel. 34, Last updated, Version 2) XX DE P.anomala gene for 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Pichia anomala OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX RN [1] RP 1-1796 RA De Wachter R.; RT ; RL Submitted (22-FEB-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Universiteit Antwerpen (UIA), Universiteitsplein 1, RL 2610 Wilrijk, Belgium XX RN [2] RP 1-1796 RA Hendriks L., Goris A., Van de Peer Y., Neefs J.M., Vancanneyt M., RA Kersters K., Berny J.F., Hennebert G., De Wachter R.; RT "The evolution of ascomycetes and ascomycete-like yeasts as RT inferred from small ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:98-104(1992). XX CC *source: strain=MUCL 28639; CC *source: is_germline=Y; XX FH Key Location/Qualifiers FH FT rRNA <1..>1796 FT /product="18S ribosomal RNA" /gene="18S rRNA" XX SQ Sequence 1796 BP; 483 A; 350 C; 457 G; 505 T; 1 other; BASE COUNT 483 a 350 c 457 g 505 t 4108 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--uuac 301 u>ACUUGGUA UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---auuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg cuugg-uc-a gccgg--u-c c-gc-(uuuu uu-)-gcg-- ---------- 1801 ---------- --ug-uacug g-ucc---ug accgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c------ uguc(-ucuc 2161 gg----)gg- ---------- ---------- -ca-----g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggnu-cg ggu-g-g-ug uu--(---uu uuaua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----uac-c c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUc-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUgc g--auuagc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gauuuuga-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 --uucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguaa--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaga-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-c uu-ccgga-u cag-cuua-g agu-agagg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ucca-cucg- 5761 ggg----cag -agaa-|gcu -agucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.guillier 5903 bp RNA RNA 11-JAN-191 DEFINITION Pichia guilliermondii. ACCESSION No information KEYWORDS No information. SOURCE Pichia guilliermondii. ORGANISM Pichia guilliermondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60304 LOCUS YSASRSUC 1744 bp ss-rRNA PLN 13-MAR-1991 DEFINITION C.guilliermondii small subunit ribosomal RNA. ACCESSION M60304 KEYWORDS small subunit ribosomal RNA. SOURCE Candida guilliermondii (strain ATCC 6260) rRNA. ORGANISM Candida guilliermondii Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. REFERENCE 1 (bases 1 to 1744) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1744 /product="small subunit ribosomal RNA" BASE COUNT 431 a 320 c 409 g 466 t 118 others ORIGIN BASE COUNT 431 a 320 c 409 g 466 t 4277 others ORIGIN 1 |--------- ----nKAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--uuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGNNC-- ----->AAUU 1561 GGAG|GG-CN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg cuugg-uu-g gccgg--u-c c-gcc-(uuu uu-)ggcg-- ---------- 1801 ---------- --ag-uacug g-a---ccca accgagcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c---auu cgcc(-cuu- 2161 gu----)gg- ---------- ---------- -uguuu--g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA--cguu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-u-ug uu--(---cu kuuuuu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-nUU GGGN|-N|C- NGGGGGGANN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGC u--gcuagc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguauagu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -a-u(----- 5041 --uucaa-)g ucga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-ug gcc(gaga-) ggucu----g ggaaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCYGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-ccgga-u ugg-uuua-a agu-agggg- ---------- ---------- 5701 -------(gc ww----)--- ---------- ---------- --------cu ccau-cuug- 5761 gaa----ccg -aaaa-|gcu -rgucaaacu ng-gun-a-u nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.membrani 5903 bp RNA RNA 11-JAN-191 DEFINITION Pichia membranifaciens subsp. synonym Pichia membranaefaciens. ACCESSION No information KEYWORDS No information. SOURCE Pichia membranifaciens subsp. synonym Pichia membranaefaciens. ORGANISM Pichia membranifaciens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58055 ID PM18SRRNA standard; DNA; FUN; 1767 BP. XX AC X58055; XX DT 08-DEC-1992 (Rel. 34, Created) DT 08-DEC-1992 (Rel. 34, Last updated, Version 2) XX DE P.membranaefaciens gene for 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Pichia membranaefaciens OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX RN [1] RP 1-1767 RA De Wachter R.; RT ; RL Submitted (22-FEB-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Universiteit Antwerpen (UIA), Universiteitsplein 1, RL 2610 Wilrijk, Belgium XX RN [2] RP 1-1767 RA Hendriks L., Goris A., Van de Peer Y., Neefs J.M., Vancanneyt M., RA Kersters K., Berny J.F., Hennebert G., De Wachter R.; RT "The evolution of ascomycetes and ascomycete-like yeasts as RT inferred from small ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:98-104(1992). XX CC *source: strain=MUCL 30004; CC *source: is_germline=Y; XX FH Key Location/Qualifiers FH FT rRNA <1..>1767 FT /product="18S ribosomal RNA" /gene="18S rRNA" XX SQ Sequence 1767 BP; 461 A; 360 C; 479 G; 465 T; 2 other; BASE COUNT 461 a 360 c 479 g 465 t 4138 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcau---u ---------- -au-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u uccg---uuc 301 u>ACAUGG-A UAACCGUGG( -A-AAAU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U CAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCC-(---- ----auu)-G GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuu-ggg ccugg-gc-g ggcgg--u-c u-ac-(-cua ug-)-gug-- ---------- 1801 ---------- --ag-uacug c-ugc----g gccggguc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--c------ ----(-cuu- 2161 gu----)--- ---------- ---------- --------g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GAU UACUUUG-AG GA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 AACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-g-cg cu--(----- uugu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-ac-ucg-g ca-ccuu--- ---------- ----agGA(- 3661 GAAA-)UCa- -aAGUc-uuu gGGU|-U|C- UNGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-acg 4081 uaau-aagga uugacaag(- uuagaga)-- --cuucucuu gauc-uuacg gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UU UUA|GUCCU- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GGACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGgc u--gcgagc- ---------a ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu cguggg---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cU-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -g-u(----- 5041 --aucaa-)a ccca-U-GGA AGUU-UGAGG CAACAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag caagu-a--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -caaccu-ug guc(gaga-) ggccc----g gguaau-cuc gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUU)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGU-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-c uu-cagga-u ugg-cgcc-g cgg-gaggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu uucc-caug- 5761 gcg----cgg -agaa-|ucu -agacaaacu ug-guc-a-u uuag-AGGUC GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.cerevisi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: J01353 M27607 LOCUS YSCRGEA 1798 bp ds-DNA PLN 15-SEP-1990 DEFINITION Yeast (S.cerevisiae) 18S ribosomal RNA gene. ACCESSION J01353 M27607 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Yeast (S.cerevisiae + D4) DNA, clones pY1rA3 and prYC. ORGANISM Saccharomyces cerevisiae Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1798) AUTHORS Rubtsov,P.M., Musakhanov,M.M., Zakharyev,V.M., Krayev,A.S., Skryabin,K.G. and Bayev,A.A. TITLE The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae JOURNAL Nucleic Acids Res. 8, 5779-5794 (1980) STANDARD full automatic REFERENCE 2 (bases 1 to 1798) AUTHORS Mankin,A.S., Skryabin,K.G. and Rubtsov,P.M. TITLE Identification of ten additional nucleotides in the primary structure of yeast 18S rRNA JOURNAL Gene 44, 143-143 (1986) STANDARD full automatic COMMENT [2] revises [1]. FEATURES Location/Qualifiers rRNA 1..1798 /note="18S ribosomal RNA" BASE COUNT 480 a 348 c 459 g 511 t ORIGIN 9 bp upstream of Sau3A site. BASE COUNT 480 a 348 c 459 g 511 t 4105 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- -uuccuuuac 301 u>ACAUGGuA UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---auuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg cccgg-uu-g gccgg--u-c c-ga--(uuu uu)--ucg-- ---------- 1801 ---------- --ug-uacug g-au--uucc aacggggccu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c---uug aguc(-cuu- 2161 gu----)gg- ---------- ---------- -cucuu--g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg u--------- ---------- ---------- ---------- 2521 ---AUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--GGUAU UCAAUUG-UC --GAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCU------ ---------- ---------- ---------- 3361 ---------- GGUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 ----gau-cg ggu-g-g-ug uu--(---uu uuuaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ucg-g ua-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-UAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU--AAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GUuUC UCA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGugg u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggu-uauc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGAACGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-ug gcc(gaga-) ggucu----u gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- uGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAG-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-c cu-cagga-u cug-cuua-g aga-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-cuca- 5761 gag----cgg -agaa-|uuu -ggacaaacu ug-guc-a-u uuag-AGGAA CU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.delbruec 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53496 ID TDSRSR standard; RNA; FUN; 1796 BP. XX AC X53496; XX DT 10-AUG-1990 (annotation) XX DE Torulaspora delbrueckii small ribosomal subunit RNA XX KW small ribosomal subunit RNA. XX OS Torulaspora delbruekii OC Eukaryota; Planta; Mycophyta; Ascomycetes. XX RN [1] (bases 1-1796) RA De Wachter R.; RT ; RL Submitted (15-JUN-1990) on tape to the EMBL Data Library by: RL De Wachter R., University of Antwerp (U.I.A.), Universiteitsplein RL 1, B-2610 Antwerp, Belgium. XX RN [2] (bases 1-1796) RA Hendriks L., Goris A., De Bruyn K., De Wachter R.; RT "The nucleotide sequence of the small ribosomal subunit RNA of the RT yeast Torulaspora delbrueckii."; RL Nucleic Acids Res. 18:4611-4611(1990). XX CC *source: strain=MUCL 27816; clone=pUC18; XX FH Key From To Description FH XX SQ Sequence 1796 BP; 480 A; 350 C; 458 G; 508 T; 0 other; BASE COUNT 480 a 350 c 458 g 508 t 4107 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u uccu--uuac 301 u>ACAUGGUA UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---auuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg ccugg-uu-g gccgg--u-c c-ga--(uuu uu)--ucg-- ---------- 1801 ---------- --ug-uacug g-uu--ucca accgggcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c---uug gguc(-cuu- 2161 gu----)gg- ---------- ---------- -cccuu--g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg u--------- ---------- ---------- ---------- 2521 ---AUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-g-ug uu--(---uu uuuacu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUagugg u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggu-uauc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ca-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-ug gcc(gaga-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- uGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAG-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-cagga-u cug-cuua-g aga-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-cuca- 5761 gag----cgg -agaa-|ucu -ggucaaacu ug-guc-a-u uuag-AGGAA CU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Z.rouxii 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58057 ID ZR18SRRNA standard; DNA; FUN; 1801 BP. XX AC X58057; XX DT 29-OCT-1992 (Rel. 33, Created) DT 29-OCT-1992 (Rel. 33, Last updated, Version 2) XX DE Z.rouxii gene for 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Zygosaccharomyces rouxii OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX RN [1] RP 1-1801 RA De Wachter R.; RT ; RL Submitted (22-FEB-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Universiteit Antwerpen (UIA), Universiteitsplein 1, RL 2610 Wilrijk, Belgium XX RN [2] RP 1-1801 RA Hendriks L., Goris L., Van Der Peer Y., Neefs J.M., Vancanneyt M., RA Kersters K., Berny J.F., Hennebert G., De Wachter R.; RT "The evolution of ascomycetes and ascomycete-like yeasts as RT inferred from small ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:98-104(1992). XX CC *source: strain=MUCL 30254; CC *source: is_germline=Y; XX FH Key Location/Qualifiers FH FT rRNA <1..>1801 FT /product="18S ribosomal RNA" /gene="18S rRNA" XX SQ Sequence 1801 BP; 475 A; 357 C; 463 G; 506 T; 0 other; BASE COUNT 475 a 357 c 463 g 506 t 4102 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u uccu--uuac 301 u>ACAUGGUA UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---uuac)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg ccugg-uc-g gccgg--u-c c-gga-(uuu u-)-uccg-- ---------- 1801 ---------- --cg-uacug g-uuu-uucc gaccgggccu u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--c---cug gguc(-cuu- 2161 gu----)gg- ---------- ---------- -cccuu--g- guga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg u--------- ---------- ---------- ---------- 2521 ---AUUGCUC -GAAUA-UAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAGUUG-UC --GAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-g-ug uu--(---uu uuuacu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-UAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGugg u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguuuuuc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-ug gcc(gaga-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- uGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAG-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-cagga-u cug-cuua-g aga-agggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccau-cuca- 5761 gag----cgg -agaa-|ucu -ggucaaacu ug-guc-a-u uuag-AGGAA CU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.fibuli.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Saccharomycopsis fibuligera subsp. was Endomyces fibuliger. ACCESSION No information KEYWORDS No information. SOURCE Saccharomycopsis fibuligera subsp. was Endomyces fibuliger. ORGANISM Saccharomycopsis fibuligera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X69841 LOCUS EF18SRRA 1806 bp DNA PLN 08-AUG-1994 DEFINITION E.fibuliger gene for 18S rRNA. ACCESSION X69841 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Endomyces fibuliger. ORGANISM Endomyces fibuliger Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales. REFERENCE 1 (bases 1 to 1806) AUTHORS Wilmotte,A.M. TITLE Direct Submission JOURNAL Submitted (17-DEC-1992) to the EMBL/GenBank/DDBJ databases. A.M. Wilmotte, University of Antwerp (U.I.A.), Dept of Biochemistry, Universiteitsplein 1, 2610 Wilrijk, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 1806) AUTHORS Wilmotte,A.M., Van de Peer,Y., Goris,A., Chapelle,S., De Baere,R., Nelissen,B., Neefs,J.M., Hennebert,G.L. and De Wachter,R. TITLE Evolutionary relationships among higher fungi inferred by small ribosomal subunit RNA sequence analysis JOURNAL Syst. Appl. Microbiol. 16, 436-444 (1993) STANDARD full automatic COMMENT NCBI gi: 529653 FEATURES Location/Qualifiers source 1..1806 /organism="Endomyces fibuliger" /strain="MUCL 14481" rRNA 1..1806 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 488 a 345 c 460 g 513 t ORIGIN BASE COUNT 488 a 345 c 460 g 513 t 4097 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- -uaccuuuac 301 u>acuUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UaCC-ACAUC (CAAG-)GAa 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCAGG- -GCCC(---- ---uuac)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 G-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuu---u- ---------- ---------- -------ggg cu-------- ---------- 1801 ---------- ---------- ---------- ---------u g-gcu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------g gcc------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------g ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------gu ccguuuuuua 2281 acgaguacug guuuucagcc gagccuuucc uccugguuuc uguguaguug ggcuugucuc 2341 agcugcauau gauccaggac ua-------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------U UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGG-- ---------- ---------- cguuuagcuc ---------- 2521 ---------- -gaaua-uau -uaGCAUGG- AA-----|UA -Augaaa-ua -ggA---cgu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --u-ucuauu 2821 -uu-guugg- -----uuucu agg----ac- cau---CGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-u-ug uu--(---cu uuuacu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aaguu-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAG--- u--acu---- guuagcgu-- -uu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gc- ugauauag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuaCU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-uu gcc(gaga-) gguau----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAG-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-cagga-u ugg-uuua-a agg-aggag- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccac-cuug- 5761 gaa----cug -agaa-|ucu -ggucaaacu ug-guc-a-u uuag-AGGAA CU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.fibuli.2 5903 bp RNA RNA 12-JUL-1996 DEFINITION Saccharomycopsis fibuligera. subsp. was Endomyces fibuliger; . ACCESSION U10409 KEYWORDS . SOURCE Saccharomycopsis fibuligera. subsp. was Endomyces fibuliger. ORGANISM Saccharomycopsis fibuligera. REFERENCE 1 (bases 1 to 2371) AUTHORS Yip,C.W., Liew,C.W. and Nga,B.H. TITLE expression of the alpha-amylase gene of Endomyces fibuliger Ribosomal RNA genes of Endomyces fibuliger: isolation, sequencing, and the use of the 26S rRNA gene in integrative transformation of Saccharomyces cerevisiae for efficient JOURNAL World J. Microbiol. Biotechnol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 2371) AUTHORS Yip,C. and Nga,B. TITLE Endomyces fibuliger 17S and 5.8S ribosomal RNA genes and spacer regions JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 1 to 2371) AUTHORS Nga,B. TITLE Direct Submission JOURNAL Submitted (06-JUN-1994) Been-Hen Nga, National University of Singapore, Lower Kent Ridge Road, Singapore O511, Singapore STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U10409 BASE COUNT 489 a 344 c 461 g 513 t 4096 others ORIGIN 1 |~~~~~~~~~ ~~~~~UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa--uu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- -uaccuuuac 301 u>acuUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UaCC-ACAUC (CAAG-)GAa 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCAGG- -GCCC(---- ---uuac)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 G-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuu---u- ---------- ---------- -------ggg cu-------- ---------- 1801 ---------- ---------- ---------- ---------u g-gcu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------g gcc------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------g ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------gu ccguuuuuua 2281 acgaguacug guuuucagcc gagccuuucc uccugguuuc uguguaguug ggcuugucuc 2341 agcugcauau gauccaggac ua-------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------U UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGG-- ---------- ---------- cguuuagcuc ---------- 2521 ---------- -gaaua-uau -uaGCAUGG- AA-----|UA -Augaaa-ua -ggA---cgu 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --u-ucuauu 2821 -uu-guugg- -----uuucu agg----ac- cau---CGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGAC GAC|UA|--- 3421 --gggau-cg ggu-g-u-ug uu--(---cu uuuacu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aaguu-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAG--- u--acu---- guuagcgu-- -uu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gc- ugauauag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuaCU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-uu gcc(gaga-) gguau----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAG-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-cagga-u ugg-uuua-a agg-aggag- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cu ccac-cuug- 5761 gaa----cug -agaa-|ucu -ggucaaacu ug-guc-a-u uuag-AGGAA CU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Basidi 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (6)-Hymeno 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS A.bisporus 5903 bp RNA RNA 11-JAN-191 DEFINITION Agaricus bisporus. ACCESSION No information KEYWORDS No information. SOURCE Agaricus bisporus. ORGANISM Agaricus bisporus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L36658 LOCUS AEDRGDA 1815 bp ds-DNA PLN 17-DEC-1994 DEFINITION Agaricus bisporus ribosomal RNA small subunit gene. ACCESSION L36658 KEYWORDS ribosomal RNA small subunit. SOURCE Agaricus bisporus DNA. ORGANISM Agaricus bisporus Eukaryota; Fungi; Eumycota; Basidiomycotina; Hymenomycetes; Agaricales; Agaricaceae. REFERENCE 1 (bases 1 to 1815) AUTHORS Hinkle,G., Wetterer,J.K., Schultz,T. and Sogin,M.L. TITLE Phylogeny of the attine ant fungi based on analysis of small subunit ribosomal RNA gene sequences JOURNAL Science (1995) In press STANDARD full automatic COMMENT NCBI gi: 602966 FEATURES Location/Qualifiers source 1..1815 /organism="Agaricus bisporus" /sequenced_mol="DNA" rRNA 1..1815 /product="ribosomal RNA small subunit" primer_bind 1..20 primer_bind complement(1779..1815) BASE COUNT 471 a 372 c 488 g 483 t 1 others ORIGIN BASE COUNT 471 a 372 c 488 g 483 t 4089 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GG-(UGA)UC CU|GCCAGU- AGGUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u accu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--acuUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUauagg- -gcuc(---- ---uuuc)gg gu-cu-uauA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-agg ccugg-uggg guggu----c c-gcu---ua acggcgu--- ---------- 1801 ---------- ---g-uacu- ---------- -----gcucu ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --------gc 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug --g-g--ucu --ua--ccuc 2161 -u-----ug- ---------- ---------- -gug------ ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- -----agccg gcguggccuu cacugguugc gucggggaac 2341 caggacu--- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- --------UU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC u--------- ---------- ---------- ---------- 2521 -augc--c-- uGAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAaa-ua -gga---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u --UC|-UAUU 2821 -UU-GUUGGU -UU------- cuagagucgc c------GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--GGUAU UGAGUCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUC-AAG- A-CCGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GGACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-cc uc--(--aaa uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gug-u c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uaac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAauag--c c--aggccgg c--------- uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----ugcu- ggucgcag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----g--CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-guc-a -g-c(----- 5041 --gucua-)g cuga-c-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GUCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 uucaccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGgcuu- 5641 agu-gagg-u cu-ccgga-u ugg-cuuu-g ggg-aaccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcgc-ccua- 5761 uugc----ug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C YGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCuugga uccc-~~~|| ||| // LOCUS C.cinereus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M92991 LOCUS CCIRRNA 1793 bp ss-rRNA RNA 30-SEP-1992 DEFINITION Coprinus cinereus ribosomal RNA. ACCESSION M92991 KEYWORDS ribosomal RNA. SOURCE Coprinus cinereus rRNA. ORGANISM Coprinus cinereus Eukaryota; Fungi; Eumycota; Basidiomycotina; Hymenomycetes; Agaricales; Coprinaceae. REFERENCE 1 (bases 1 to 1793) AUTHORS Bruns,T.D., Vilgalys,R. and Gonzalez,D. TITLE Evolutionary relationships within the fungi: Analyses of nuclear smaill subunit rRNA sequences JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1793 /product="ribosomal RNA" BASE COUNT 463 a 364 c 481 g 485 t ORIGIN BASE COUNT 463 a 364 c 481 g 485 t 4110 others ORIGIN 1 |--------- -CCAUUACCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaacuuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuuu 241 augg<----- ---------- ---------- ---------- ---------u aucu---uac 301 ->ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc gaa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCC--G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CCAUAUAGG- -GCCC(---- ---uuuu)GG Gg--C-UAUA A-UUGGAAU- 1501 ------G-G- ----ACAAUU -UAAA--UCC C-----AA-C GA-GGA-C-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-A-CGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-aga ccugg-cugg gc-gg--u-c g-ua-(-acg gg-)-ugu-- ---------- 1801 ---------- ------acug u-cu-----g gcugggcc-u u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg---uga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc c--ggcg--u gccc(-uuua 2161 uu----)gg- ---------- ---------- -ugugcguc- gggg------ ---------- 2221 ---a------ --accaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCCC -GAAUA-CUU -UAGCAUGG- AA-----|UA -AUAAAAUUA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAG- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--GGUAU UGAGUCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUC-AAG- A-CCAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-cc uca-(---au uuuga----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugug-u c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUc--uu uGGG|-U|U- CUGGGGGGGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 ACGCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uaac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCca g--gccguc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gau ggucgc-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-a -g-c(----- 5041 --gucua-)g cuga-C-GGA AGU--UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GC-GC A-CG-GUGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-u cu-ccgga-u ugg-cuuu-g ggg-agcg-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-ccua- 5761 uug----cug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Tri.matsut 5903 bp RNA RNA 29-SEP-1998 DEFINITION Tricholoma matsutake.. ACCESSION No information KEYWORDS No information. SOURCE Tricholoma matsutake. ORGANISM Tricholoma matsutake. REFERENCE 1 (bases 1 to 2371) AUTHORS Hwang,S. and Kim,J. TITLE Cloning and Organization of the Ribosomal RNA Genes of the Mushroom Tricholoma matsutake JOURNAL J. Microbiol. Biotechnol. 5 (42), 194-199 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U62538 LOCUS TMU62538 2861 bp DNA PLN 29-SEP-1998 DEFINITION Tricholoma matsutake intergenic spacer 2, partial sequence, 18S ribosomal RNA gene, complete sequence and internal transcribed spacer 1, partial sequence. ACCESSION U62538 NID g1490527 KEYWORDS . SOURCE Tricholoma matsutake. ORGANISM Tricholoma matsutake Eukaryota; Fungi; Basidiomycota; Hymenomycetes; Agaricales; Tricholomataceae; Tricholoma. REFERENCE 1 (sites) AUTHORS Hwang,S. and Kim,J. TITLE Cloning and Organization of the Ribosomal RNA Genes of the Mushroom Tricholoma matsutake JOURNAL J. Microbiol. Biotechnol. 5 (42), 194-199 (1995) REFERENCE 2 (bases 1 to 2861) AUTHORS Hwang,S. and Kim,J. TITLE Nucleotide sequence analysis of the 5S ribosomal RNA gene of the mushroom Tricholoma matsutake JOURNAL J. Microbiol. 33 (2), 136-141 (1995) REFERENCE 3 (sites) AUTHORS Hwang,S.K. and Kim,J.G. TITLE Small-subunit ribosomal DNA of an ectomycorrhizal fungus Tricholoma matsutake: sequence, structure and phylogenetic analysis JOURNAL Mol. Cells 8 (3), 251-258 (1998) MEDLINE 98330889 REFERENCE 4 (bases 1 to 2861) AUTHORS Hwang,S. TITLE Direct Submission JOURNAL Submitted (28-JUN-1996) Department of Microbiology, Kyungpook National University, 1370 Sankyuk-Dong, Buk-Ku, Taegu 702-701, Korea FEATURES Location/Qualifiers source 1..2861 /organism="Tricholoma matsutake" /specific_host="Pinus densiflora" /db_xref="taxon:40145" /dev_stage="fruiting body" rRNA 1044..2848 /citation=[1] /citation=[3] /product="18S ribosomal RNA" /evidence=experimental BASE COUNT 733 a 582 c 763 g 783 t BASE COUNT 473 a 362 c 479 g 491 t 4098 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaa---a ------uuug --u-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augu------ ---------- ---------- ---------- ---------u accu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAGG- -GCUC(---- ---uuuc)GG GU-CU-UAUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-aga ccugg-uc-g ggcgg--u-c c-gcc-(uca c--)ggug-- ---------- 1801 ---------- --ug-uacug --u---cuga cugg-gcc-u u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag ccggcgugc- --cc---uu- 2161 u--auuggu- ---------- ---------- -gugcguggg g-ga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UAUGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA--cgu- 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAG- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--GGUAU UGAGUCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUC-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-a-a-uc uc--(---aa uauuuau--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gug-u u-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uaac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCA g--gccggc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggu-cgcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-guc-a -g-c(----- 5041 --gucua-)g cuga-c-gGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uucaccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-u cu-ccgga-u ugg-cuuu-g agg-agccg- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- --------cg gcac-cuua- 5761 uug----cug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)-CUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.unicolor 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M59760 LOCUS SONRR18S 1718 bp ds-DNA PLN 10-MAR-1992 DEFINITION Spongipellis unicolor 18S ribosomal RNA gene, partial. ACCESSION M59760 KEYWORDS 18S ribosomal RNA. SOURCE Spongipellis unicolor (library: ATCC 26733) DNA. ORGANISM Spongipellis unicolor Eukaryota; Fungi; Eumycota; Basidiomycotina; Hymenomycetes; Aphyllophorales; Polyporaceae. REFERENCE 1 (bases 1 to 1718) AUTHORS Bowman,B.H., Taylor,J.W., Brownlee,A.G., Lee,J., Lu,S.-D. and White,T.J. TITLE Molecular evolution of the fungi: Relationship of the basidiomycetes, ascomycetes, and chytridiomycetes JOURNAL Mol. Biol. Evol. 9, 285-296 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA <1..>1718 /note="PCR-derived sequence" /note="About 38 bp are missing at the 5' end and 49 bp at the 3' end of the 18S rRNA" /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 446 a 348 c 461 g 462 t 1 others ORIGIN BASE COUNT 446 a 348 c 461 g 462 t 4186 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaguuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u gcuu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAGG- -GCUC(---- ---uuuc)GG GU-CU-UNUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-aga ccugg-cc-g ggcgg--u-c u-gcc-(uca c)--ggua-- ---------- 1801 ---------- --ug-uacug u------cug gcuggguc-u u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--c-ggcau gccc(-uuua 2161 cu----)gg- ---------- ---------- -gugugccg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGUu ---------- ---------- ---------- ---------- 2521 ---AUCGCCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAG- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAGUUG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-uc uc--(---aa acuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gug-u c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 ugac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCA g--gccggc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu gguc-gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-u -g-c(----- 5041 --gucua-)g caga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uucaccg-gc cuu(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-u cu-uggga-u ugg-cuuc-g ggg-agccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-ccug- 5761 uug----cug -agaa-|cuu -gaucaaacu ug-guc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS B.satanas 5903 bp RNA RNA 11-JAN-191 DEFINITION Boletus satanas. ACCESSION No information KEYWORDS No information. SOURCE Boletus satanas. ORGANISM Boletus satanas. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M94337 BASE COUNT 452 a 359 c 486 g 480 t 4126 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaguuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u gacu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAGG- -GCUC(---- ---uuuu)GG GU-CU-UAUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg ccugg-acgg gcggu--c-c g-ccgc--aa ggcguugu-- ---------- 1801 ---------- --ac-ugucu g-g---cc-- --gggcc--u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa u--cg-gugu gccc(-uuca 2161 cu----)gg- ---------- ---------- -gugcaucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg u--------- ---------- ---------- ---------- 2521 ---UUCGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUGAAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAG- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAGUCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-cc ucu-(---uu uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gug-u c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 ugac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCc- a--ggccggc ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggucu-uc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-g -g-c(----- 5041 --gucua-)g ccga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gagg-u cu-ccgga-u ugg-cuuc-g ggg-agccg- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- --------cg gcac-ccug- 5761 uug----cug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS X.chrysent 5903 bp RNA RNA 11-JAN-191 DEFINITION Xerocomus chrysentero. ACCESSION No information KEYWORDS No information. SOURCE Xerocomus chrysentero. ORGANISM Xerocomus chrysentero. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M94340 BASE COUNT 452 a 362 c 487 g 476 t 4126 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgaauuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u gacu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAGG- -GCUC(---- ---uuuc)GG GU-CU-UAUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg cgugg-acgg gcggu--c-c g-ucg--aaa ggcguugu-- ---------- 1801 ---------- --ac-ugucu g-g---cca- ---ggcc--u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa u--cggcg-u gccc(-uuca 2161 cu----)gg- ---------- ---------- -gugcgucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg u--------- ---------- ---------- ---------- 2521 ---UUCGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUGAAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAG- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAGUCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-cc ucu-(---uu uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gug-u c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 ugac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCc- a--ggccggc ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggucu-cc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-g -g-c(----- 5041 --gucua-)g ucga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gagg-u cu-ccgga-u cgg-cuuc-g ggg-agccg- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- --------cg gcac-ccug- 5761 uug----cug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.praticol 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M92990 LOCUS TNARRNA 1800 bp ss-rRNA RNA 30-SEP-1992 DEFINITION Thanatephorus praticola ribosomal RNA. ACCESSION M92990 KEYWORDS ribosomal RNA. SOURCE Thanatephorus praticola (strain 7Rs) rRNA. ORGANISM Thanatephorus praticola Eukaryota; Fungi; Eumycota; Basidiomycotina; Phragmobasidiomycetes; Heterobasidiomycetidae; Tremellales; Tulasnellaceae. REFERENCE 1 (bases 1 to 1800) AUTHORS Bruns,T.D., Vilgalys,R. and Gonzalez,D. TITLE Evolutionary relationships within the fungi: Analyses of nuclear smaill subunit rRNA sequences JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1800 /product="ribosomal RNA" BASE COUNT 470 a 354 c 474 g 502 t ORIGIN BASE COUNT 470 a 354 c 474 g 502 t 4103 others ORIGIN 1 |--------- CUAAAUUACC UGU(UGA)CU CU|GCCAGU- A-GUCA-UAU --G-UUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u aucu---uac 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCC--G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAGG- -GCUc(---- ---uuuu)gG GU-CU-UAUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC C-----AA-C GA-GGA-C-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-agg ccugg-gc-g ggcgg--u-c u-gc-(--uc acg)-gua-- ---------- 1801 ---------- --ug-uacug u-cu-----g ccuggguc-u u-acu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--cggca-u gcuc(-uuua 2161 cu----)gg- ---------- ---------- -gugugucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAG- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAGUUG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-uc uca-(---cu uuuga----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugug-u c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUUCuuu gGGU|uU|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 ACGCUGCG|G CU-UAAUUU- (--UCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uaac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-GUCAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca g--gccggc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc uggucgca-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-a -g-c(----- 5041 --gucua-)g cuga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGC-UGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uucaccu-ug gcc(ggaa-) gguucu---g gguaau-cuu gugaaa]--- ---------- 5461 -------CUU UGU-C-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-u cu-ccgga-u ugg-cuuu-g gggagcg--- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-ucua- 5761 uug----cug -agaa-|gcu -gauca-aac ug-guc-a-u uuag-AGGAA GUUAAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CUCGAAGG CAUUAUU--- 5881 --G~~~~~~~ ~~~~~~~~|| ||| // LOCUS A.bombacin 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55638 LOCUS ATERR16S 1809 bp ss-rRNA RNA 23-FEB-1991 DEFINITION Athelia bombacina 16S-like ribosomal RNA gene. ACCESSION M55638 KEYWORDS 16S-like rRNA; protist; small subunit rRNA. SOURCE Athelia bombacina (ATCC 20629) ribosomal RNA. ORGANISM Athelia bombacina Eukaryota; Plantae; Thallobionta; Basidiomycotina; Hymenomycetes; Agaricales; Corticiaceae. REFERENCE 1 (bases 1 to 1809) AUTHORS Illingworth,C.A., Andrews,J.H., Bibeau,C. and Sogin,M.L. TITLE Phylogeny of Athelia bombacina, Aureobasidium pullulans, and Colletotrichum gloeosporioides estimated from sequence analysis of small subunit ribosomal RNAs JOURNAL Unpublished (1990) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1809 /note="small subunit rRNA" /product="16S-like rRNA" /gene="16S rRNA" BASE COUNT 478 a 363 c 479 g 488 t 1 others ORIGIN BASE COUNT 478 a 363 c 479 g 488 t 4095 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAGG- -GCUC(---- ---uuuc)GG GU-CU-UAUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-agg ccugg-uu-g ggcgg--u-c c-gcu-(uaa c-)-ggcg-- ---------- 1801 ---------- --ug-uacug u-------cu gacugggucu u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--cg-gcgu gcca(-uuua 2161 uu----)ug- ---------- ---------- -gugcgucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UACGCCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAG- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--GGUAU UGAGUCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUC-AAG- A-CCAACU-A UUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-a-a-cc uca-(---au uuuga----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugug-u u-gu-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uaac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGAca g--gccggc- ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggucgcgg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-a -g-c(----- 5041 --gucua-)g cuga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gagg-u cu-ccgga-u ugg-cuuu-g ugg-agccg- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ------cggc aacc-cgcg- 5761 uug----cug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS F.neofor.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Filobasidiella neoformans. ACCESSION No information KEYWORDS No information. SOURCE Filobasidiella neoformans. ORGANISM Filobasidiella neoformans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X60183 ID CNSRSRNA standard; DNA; FUN; 1797 BP. XX AC X60183; XX DT 12-OCT-1992 (Rel. 33, Created) DT 12-OCT-1992 (Rel. 33, Last updated, Version 2) XX DE F.neoformans (telomorph), C.neoformans (anamorph) small ribosomal DE subunit RNA gene XX KW small ribosomal subunit RNA. XX OS Cryptococcus neoformans OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina; OC Filobasidiales. XX OS Filobasidiella neoformans OC Eukaryota; Plantae; Thallobionta; Basidiomycotina. XX RN [1] RP 1-1797 RA De Wachter R.; RT ; RL Submitted (23-JUN-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Univ of Antwerp, Universiteitsplein 1, B-2610 RL Antwerp, BELGIUM XX RN [2] RP 1-1797 RA Van de Peer Y., Hendriks L., Goris A., Neefs A., Vancanneyet M., RA Kersters K., Berny J.F., Hennebert G.L., De Wachter R.; RT "Evolution of Basidiomycetous Yeasts as Deduced from small RT ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:250-258(1992). XX CC *source: strain=MUCL 30453; XX CCSeeX60179toX60183forassociatedBasidiomycetiousyeastsmall CCribosomalsubunitRNAsequences. XX FHKeyLocation/Qualifiers FH FTrRNA1..1797 FT/product="smallribosomalsubunitRNA" XX SQSequence1797BP;469A;373C;484G;471T;0other; BASE COUNT 469 a 373 c 484 g 471 t 4106 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgaauuc ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u aucu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUC(---- ---uuuu)GG GC-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G -U-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-agg ucugg-cg-a ggcgg--u-c c-ucc(-uca c--)ggag-- ---------- 1801 ---------- --gu-cacug u-------cu ugcuggaccu u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gu c--cu-guau gcuc(-uuua 2161 cu----)gg- ---------- ---------- -gugugcag- ggga------ ---------- 2221 ---a------ ---ccaggaa ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCa ---------- ---------- ---------- ---------- 2521 ---AUCGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--GGUAU UCCGUUG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GACGG-AAG- A-CCAACA-A CUGC(-GAAA )--GC|---- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCAAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcc-c-a-cg uc--(---aa ucucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-gg-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUc-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CC-AUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUca g--gccggc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggucguuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-g -g-c(----- 5041 --gucua-)g ucga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CUGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---u------ 5401 accgccu-u- gcc(gaga-) -gccu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc agu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCACCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gaga-u cu-ccgga-u ugg-cguu-g ggg-agccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg --ac-cccu- 5761 ugg----cug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --GUA~~~~~ ~~~~~~~~|| ||| // LOCUS F.neofor.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Filobasidiella neoformans. ACCESSION No information KEYWORDS No information. SOURCE Filobasidiella neoformans. ORGANISM Filobasidiella neoformans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55625 LOCUS CPCDA 1795 bp ds-DNA PLN 22-FEB-1991 DEFINITION Cryptococcus neoformans small subunit ribosomal RNA. ACCESSION M55625 KEYWORDS 16S-like ribosomal RNA; small subunit rRNA. SOURCE C.neoformans DNA and rRNA. ORGANISM Cryptococcus neoformans Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina; Filobasidiales. REFERENCE 1 (bases 1 to 1795) AUTHORS Sogin,M.L., Bibeau,C., Elwood,H., Stickel,S., Weisburg,W., Barnes,S. and Lane,D.L. TITLE Phylogenetic relationships between major classes of fungi JOURNAL Unpublished (1990) STANDARD simple staff_entry BASE COUNT 450 a 361 c 475 g 448 t 61 others ORIGIN BASE COUNT 450 a 361 c 475 g 448 t 4169 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nn nnnngaauuc ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u aucu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUC(---- ---uuuu)GG GC-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -WGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-agg ucugg-cg-a ggcgg--u-c c-ucc-(uca c-)-ggag-- ---------- 1801 ---------- --ug-cacug u-------cu ugcuggaccu u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gu c--cu-guau gcuc(-uuua 2161 cu----)gg- ---------- ---------- -gugugcag- ggga------ ---------- 2221 ---a------ ---ccaggaa ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCa ---------- ---------- ---------- ---------- 2521 ---AUCGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--GGUAU UCCGUUG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GACGG-AAG- A-CCAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCAAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcc-c-a-cg uc--(---aa ucucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-gg-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUca g--gccggc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggucguuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-g -g-c(----- 5041 --gucua-)g ucga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CUGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---u------ 5401 accgccu-ug gcc(gaga-) ggccu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc agu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCACCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gaga-u cu-ccgga-u ugg-cguu-g ggg-agccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-cccu- 5761 ugg----cug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS F.neofor.B 5903 bp RNA RNA 11-JAN-191 DEFINITION Filobasidiella neoformans serotype B. ACCESSION No information KEYWORDS No information. SOURCE Filobasidiella neoformans serotype B. ORGANISM Filobasidiella neoformans serotype B. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L05427 LOCUS CPC17SRNAB 1871 bp ds-DNA PLN 02-NOV-1992 DEFINITION Cryptococcus neoformans 17S rRNA gene, complete gene. ACCESSION L05427 KEYWORDS 17S ribosomal RNA; PCR primer. SOURCE Cryptococcus neoformans (serotype B, sub_species gattii) (library: ATCC 24065) DNA. ORGANISM Cryptococcus neoformans Eukaryota; Fungi; Eumycota; Basidiomycotina; Filobasidiales. REFERENCE 1 (bases 1 to 1871) AUTHORS Fan,M. and Casadevall,A. TITLE Sequence of 17S-like ribosomal RNA of the pathogenic fungus Cryptococcus neoformans JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..17 /note="corresponds to oligonucleotide primer used in pcr amplification" /note="putative" rRNA 1..1802 /product="17S ribosomal RNA" /note="putative" BASE COUNT 484 a 391 c 502 g 494 t ORIGIN BASE COUNT 469 a 374 c 488 g 471 t 4101 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgaauuc ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u aucu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUC(---- ---uuuu)GG GC-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-agg ucugg-cg-a ggcgg--u-c c-ucc-(uca c-)-ggag-- ---------- 1801 ---------- --ug-cacug u-------cu ugcuggaccu u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gu c--cu-guau gcuc(-uuua 2161 cu----)gg- ---------- ---------- -gugugcag- ggga------ ---------- 2221 ---a------ ---ccaggaa ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCa ---------- ---------- ---------- ---------- 2521 ---AUCGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--GGUAU UCCGUUG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GACGG-AAG- A-CCAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCAAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcc-c-a-cg uc--(---aa ucucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-gg-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca g--gccggc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggucguuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-g -g-c(----- 5041 --gucua-)g ucga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CUGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---u------ 5401 accgccu-ug gcc(gaga-) ggccu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc agu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCACCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gaga-u cu-cugga-u ugg-cguu-g ggg-agccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-cccu- 5761 ugg----ccg -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 ---------- -------~|| ||| // LOCUS F.neofor.D 5903 bp RNA RNA 11-JAN-191 DEFINITION Filobasidiella neoformans serotype D. ACCESSION No information KEYWORDS No information. SOURCE Filobasidiella neoformans serotype D. ORGANISM Filobasidiella neoformans serotype D. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L05428 LOCUS CPC17SRNAD 1871 bp ds-DNA PLN 02-NOV-1992 DEFINITION Cryptococcus neoformans 17S rRNA gene, complete gene. ACCESSION L05428 KEYWORDS 17S ribosomal RNA; PCR primer. SOURCE Cryptococcus neoformans (serotype D, sub_species neoformans) (library: ATCC 24067) DNA. ORGANISM Cryptococcus neoformans Eukaryota; Fungi; Eumycota; Basidiomycotina; Filobasidiales. REFERENCE 1 (bases 1 to 1871) AUTHORS Fan,M. and Casadevall,A. TITLE Sequence of 17S-like ribosomal RNA of the pathogenic fungus Cryptococcus neoformans JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..17 /note="corresponds to oligonucleotide primer used in pcr amplification" /note="putative" rRNA 1..1802 /product="17S ribosomal RNA" /note="putative" BASE COUNT 484 a 390 c 502 g 495 t ORIGIN BASE COUNT 469 a 374 c 488 g 471 t 4101 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgaauuc ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u aucu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUC(---- ---uuuu)GG GC-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-agg ucugg-cg-a ggcgg--u-c c-ucc-(uca c-)-ggag-- ---------- 1801 ---------- --ug-cacug u-------cu ugcuggaccu u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gu c--cu-guau gcuc(-uuua 2161 cu----)gg- ---------- ---------- -gugugcag- ggga------ ---------- 2221 ---a------ ---ccaggaa ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCa ---------- ---------- ---------- ---------- 2521 ---AUCGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--GGUAU UCCGUUG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GACGG-AAG- A-CCAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCAAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcc-c-a-cg uc--(---aa ucucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-gg-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca g--gccggc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggucguuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-g -g-c(----- 5041 --gucua-)g ucga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CUGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---u------ 5401 accgccu-ug gcc(gaga-) ggccu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc agu-c-g--- uGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCACCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gaga-u cu-ccgga-u ugg-cguu-g ggg-agccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-cccu- 5761 ugg----cug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 ---------- -------~|| ||| // LOCUS Bull.alba 5903 bp RNA RNA 11-JAN-191 DEFINITION Bullera alba. ACCESSION No information KEYWORDS No information. SOURCE Bullera alba. ORGANISM Bullera alba. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X60179 ID BASRSRNA standard; DNA; FUN; 1804 BP. XX AC X60179; XX DT 15-SEP-1992 (Rel. 33, Created) DT 15-SEP-1992 (Rel. 33, Last updated, Version 2) XX DE B.alba (anamorph) small ribosomal subunit RNA gene XX KW small ribosomal subunit RNA. XX OS Bullera alba OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Sporobolomycetaceae. XX RN [1] RP 1-1804 RA De Wachter R.; RT ; RL Submitted (23-JUN-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Univ of Antwerp, Universiteitsplein 1, B-2610 RL Antwerp, BELGIUM XX RN [2] RP 1-1804 RA Van de Peer Y., Hendriks L., Goris A., Neefs A., Vancanneyet M., RA Kersters K., Berny J.F., Hennebert G.L., De Wachter R.; RT "Evolution of Basidiomycetous Yeasts as Deduced from small RT ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:250-258(1992). XX CC *source: strain=MUCL 30301; XX CC See X60179 to X60183 for associated Basidiomycetious yeast small CC ribosomal subunit RNA sequences. XX FH Key Location/Qualifiers FH FT rRNA 1..1804 FT /product="small ribosomal subunit RNA" XX SQ Sequence 1804 BP; 473 A; 367 C; 483 G; 480 T; 1 other; BASE COUNT 473 a 367 c 483 g 480 t 4100 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuc ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u aucu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAGG- -GCUc(uauu cucuauu)gG GU-CU-UAUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggg acnug-gcgg gaugg--u-c c-gc-(--uu acg)-gug-- ---------- 1801 ---------- --ug-uacug u-cu----gg ccgggccu-u --acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag g--cc-guau gccc(-uuua 2161 cu----)gg- ---------- ---------- -gugugcgg- ugga------ ---------- 2221 ---a------ ---ccaggaa ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGG-- ---------- ---------- ---------- ---------- 2521 ---CAUACCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--AGUAU UCAGUUG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UACUG-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCAAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-c-a-cg uu--(---au uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGaca g--gccggc- ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc uggucguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GU-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-g -g-c(----- 5041 --guuua-)g ccga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CUGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggccu----g gguaau-cuu gugaaa]--- ---------- 5461 -------CUC AGU-C-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCACCAA- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 ggu-gaga-u cu-ccgga-u ugg-cguu-g aggagccg-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -cgc-cucu- 5761 ugg----ccg -agaa-|gcu -gaucaaacc ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Bull.globo 5903 bp RNA RNA 11-JAN-191 DEFINITION Bullera globospora. ACCESSION No information KEYWORDS No information. SOURCE Bullera globospora. ORGANISM Bullera globospora. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D31650 LOCUS BULSSRRGC 1753 bp DNA PLN 22-SEP-1995 DEFINITION Bullera globospora small subunit ribosomal RNA gene. ACCESSION D31650 KEYWORDS xmall subunit ribosomal RNA. SOURCE Bullera globospora (strain JCM8251, ) DNA. ORGANISM Bullera globospora Eukaryotae; mitochondrial eukaryotes; Eumycota; Basidiomycotina; Hymenomycetes; Tremellales; mitosporic Tremellales; Bullera. REFERENCE 1 (bases 1 to 1753) AUTHORS Suh,S.O. and Nakase,T. TITLE Phylogenetic analysis of the ballistosporous anamorphic genera Udeniomyces and Bullera, and related basidiomycetous yeasts, based on 18S rDNA sequence JOURNAL Microbiology 141 ( Pt 4), 901-906 (1995) MEDLINE 95291439 COMMENT Submitted (27-May-1994) to DDBJ by: Sung-Oui Suh The Institute of Physical and Chemical Research (RIKEN) Japan Collection of Microorganisms Hirosawa 2-1 Wako, Saitama 351-01 Japan Phone: 0484-62-1111 x5100 Email: Suh@viola.riken.go.jp Fax: 0484-64-5651. NCBI gi: 995459 FEATURES Location/Qualifiers source 1..1753 /organism="Bullera globospora" /strain="JCM8251" /sequenced_mol="DNA" rRNA 1..1753 /product="small subunit ribosomal RNA gene" BASE COUNT 460 a 357 c 477 g 459 t ORIGIN BASE COUNT 460 a 357 c 477 g 459 t 4150 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgaauuc ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u aucu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--acuUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUacagg- -gcuc(---- ---uauu)gg gu-cu-uguA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggg ccuggcggga u-ggu----c c-gc--cuua cggu-gug-- ---------- 1801 ---------- --c------- ---------- -------acu a--------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- -------ucu g--------- 2161 -------gc- ---------- ---------- -c-------- --gg------ ---------- 2221 ---g------ --cuu----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- -accuccugg ugagcucaug uccuuuacug 2341 gguguggggu ggaaccagga au-------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- --------UU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGC- ---------- ---------- ---------- ---------- 2521 -aaacgccc- -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAgaa-ua -gga---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u --UC|-UAUU 2821 -UU-GUUGGU -UU------- cuagagucgc c------GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--AGUAU UCCGUUG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GACGG-AAG- A-CUAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUCAGGGGA- UCAAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UG--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-c-u-gc uc--(----a auugu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g g-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAauaguc- ---aggccgg c--------- -uu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uggcu ggu-cguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-guc-g -g-c(----- 5041 --guuua-)g ccga-c-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CUGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggccu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc agu-c-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCACCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCUGU CGCUAC-U-A CC-GAU--UG AA-UGgcuu- 5641 agu-gaga-u cu-cugga-u ugg-cguu-- gag-gaccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-cucu- 5761 uggc----ug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUA~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Bull.oryza 5903 bp RNA RNA 11-JAN-191 DEFINITION Bullera oryzae. ACCESSION No information KEYWORDS No information. SOURCE Bullera oryzae. ORGANISM Bullera oryzae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D31652 LOCUS BULSSRRGE 1755 bp DNA PLN 22-SEP-1995 DEFINITION Bullera oryzae small subunit ribosomal RNA gene. ACCESSION D31652 KEYWORDS xmall subunit ribosomal RNA. SOURCE Bullera oryzae (strain JCM5281, ) DNA. ORGANISM Bullera oryzae Eukaryotae; mitochondrial eukaryotes; Eumycota; Basidiomycotina; Hymenomycetes; Tremellales; mitosporic Tremellales; Bullera. REFERENCE 1 (bases 1 to 1755) AUTHORS Suh,S.O. and Nakase,T. TITLE Phylogenetic analysis of the ballistosporous anamorphic genera Udeniomyces and Bullera, and related basidiomycetous yeasts, based on 18S rDNA sequence JOURNAL Microbiology 141 ( Pt 4), 901-906 (1995) MEDLINE 95291439 COMMENT Submitted (27-May-1994) to DDBJ by: Sung-Oui Suh The Institute of Physical and Chemical Research (RIKEN) Japan Collection of Microorganisms Hirosawa 2-1 Wako, Saitama 351-01 Japan Phone: 0484-62-1111 x5100 Email: Suh@viola.riken.go.jp Fax: 0484-64-5651. NCBI gi: 995461 FEATURES Location/Qualifiers source 1..1755 /organism="Bullera oryzae" /strain="JCM5281" /sequenced_mol="DNA" rRNA 1..1755 /product="small subunit ribosomal RNA gene" BASE COUNT 468 a 347 c 465 g 475 t ORIGIN BASE COUNT 468 a 347 c 465 g 475 t 4148 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuc ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u aucu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--acuUU -CGAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUacagg- -gcuc(---- ---uaau)gg gu-cu-uguA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggg cccggcggau --ggu----c c-gc---cuu acg--gug-- ---------- 1801 ---------- --ug-uacu- ---------- -----gucuu ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --------gc 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug --g-g--ucu --ua--ccuc 2161 -u-----ug- ---------- ---------- -gug------ ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- -----aagcc ucaugcccuu uacugggugu ggggucgaac 2341 caggaau--- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- --------UU UACUUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC u--------- ---------- ---------- ---------- 2521 -uugc--cc- -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAgaa-ua -gga---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u --UC|-UAUU 2821 -UU-GUUGGU -UU------- cuaggaucgc c------GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--AGUAU UCCAUUG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UAUGG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCAAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gau-c-c-au uc--(----a aguau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gaa-g g-au-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAauag--c c--aggccgg c--------- -uu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uggcu ggucgucg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----g--CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-aac-a -g-c(----- 5041 --guuua-)g cugu-u-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CUGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 aucaccu-ua gcu(gaga-) a-cuu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc agu-c-g--- ugcU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGgcuu- 5641 agu-gaga-u cu-ccgga-u ugg-cguu-a ggg-agccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-ccuu- 5761 uggc----ug -agaa-|guu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUA~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.cutaneum 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X60182 ID TCSRSRNA standard; DNA; FUN; 1799 BP. XX AC X60182; XX DT 12-OCT-1992 (Rel. 33, Created) DT 12-OCT-1992 (Rel. 33, Last updated, Version 2) XX DE T.cutaneum (anamorph) small ribosomal subunit RNA gene XX KW small ribosomal subunit RNA. XX OS Trichosporon cutaneum OC Eukaryota; Plantae; Thallobionta; Basidiomycotina. XX RN [1] RP 1-1799 RA De Wachter R.; RT ; RL Submitted (23-JUN-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Univ of Antwerp, Universiteitsplein 1, B-2610 RL Antwerp, BELGIUM XX RN [2] RP 1-1799 RA Van de Peer Y., Hendriks L., Goris A., Neefs A., Vancanneyet M., RA Kersters K., Berny J.F., Hennebert G.L., De Wachter R.; RT "Evolution of Basidiomycetous Yeasts as Deduced from small RT ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:250-258(1992). XX CC *source: strain=MUCL 30308; XX CC See X60179 to X60183 for associated Basidiomycetious yeast small CC ribosomal subunit RNA sequences. XX FH Key Location/Qualifiers FH FT rRNA 1..1799 FT /product="small ribosomal subunit RNA" XX SQ Sequence 1799 BP; 479 A; 357 C; 474 G; 489 T; 0 other; BASE COUNT 479 a 357 c 474 g 489 t 4104 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuu ---------- -au-accgug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u aucu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAGG- -GCUC(---- ---uauu)GG GU-CU-UAUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggg ccugg-cg-g gacgg--u-c u-gcc(-uua c--)ggua-- ---------- 1801 ---------- --ug-uacug u-c-----ug gcuggguc-u u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag g--cc-guau gccc(-uuca 2161 uu----)gg- ---------- ---------- -gugugcgg- ugga------ ---------- 2221 ---a------ ---ccaggaa ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCa ---------- ---------- ---------- ---------- 2521 ---AUUGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --CGGGGGCA UU|--AGUAU UCCGUUG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UACGG-AAG- A-CUAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCAAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg guc-c-a-cg uu--(---au uuucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ga-ucg-g ca-ccuu--- ---------- ----ccGA(- 3661 GAAA-)UCa- -aAGUc-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGAca u--gccggc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggcagc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gu-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Uuu-g -g-c(----- 5041 --guuua-)g ccaa-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CUGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ua gcu(gaga-) agcuu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc agu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCACCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gaga-c cc-ucgga-u ugg-cguu-a aga-agccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg aucu-uuu-- 5761 -gg----ccg -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-Uredin 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS L.scottii 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53499 LOCUS LECRRNAG 1803 bp ss-mRNA PLN 02-DEC-1991 DEFINITION L. scottii small ribosomal RNA coding region ACCESSION X53499 KEYWORDS small subunit ribosomal RNA. SOURCE Leucosporidium scottii RNA. ORGANISM Leucosporidium scottii Fungi; Eumycota; Basidiomycotina; Teliomycetes; Ustilaginales. REFERENCE 1 (bases 1 to 1803) AUTHORS Hendriks,L., De Baere,R., Van de Peer,Y., Neefs,J.M., Goris,A. and De Wachter,R. TITLE The evolutionary position of the rhodophyte Porphyra umbilicalis and the basidiomycete Leucosporidium scottii among other eukaryotes as deduced from complete sequence of small ribosomal subunit RNA JOURNAL J. Mol. Evol. 32, 167-177 (1991) STANDARD full automatic COMMENT *source: strain=MUCL 28629; *source: clone=pUC18; From EMBL entry LSRRNAG; dated 17-OCT-1991. BASE COUNT 476 a 365 c 478 g 484 t ORIGIN BASE COUNT 476 a 365 c 478 g 484 t 4100 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------uu aagcaa---u ---------- -aa-acggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- cau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accc---uac 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGA-U GAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGA G-GGCC(U-G AGAAAC)GGC CCUC-AGGUC (UAAG-)GAC 1261 ACGCAGC-A- ---------| GGC-GC-GC- AAAUU-AUCC -CCUGGC-A( -acacuu-)U 1321 GCCG-A-GAU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCUC(---- ---uuac)GG GU-CU-UGCA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CCG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggu cccug-uu-g gucgg--u-c c-gcc-(uuc uu)-ggug-- ---------- 1801 ---------- --ug-uacuu a------cuc aacggggacu u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--ug-cgau gucc(-uuua 2161 cu----)gg- ---------- ---------- -gugucgua- gcga------ ---------- 2221 ---a------ ---cuaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC ---------- ---------- ---------- ---------- 2521 ---UACGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgc 2581 gcgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UCC|-CAUU 2821 -UU-GUUGGU -UU-CU---- -----GAGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGGA UU|--UGUAU UCCGUCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACU-A UUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GAAGGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU CU--UCU-GU AAACUAUGCC AAU|UG|--- 3421 --gggau-ca gcu-c-a-gg au--(--uuu uaau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ag-uug-g ca-cccg--- ---------- ----aaGA(- 3661 GAAA-)UCu- --UUAA-aug aGGU|-U|C- GGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugauagc)-- --ucuuucuu gauc-uugug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGACc ---agccggc ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggcugc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gu-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-a -g-c(----- 5041 --guuua-)g cuga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguaa--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaaccu-uu gcc(ggaa-) ggcau----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGAU-G-GGG AUAGAACAU( UGCAAUUA)U UGUUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAU (-UCAUCAG- )AUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CGCCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gagg-c cu-ccgga-u ugg-cuau-u ggg-auccc- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- --------gg gaac-cuga- 5761 cug----ccg -agaa-|guu -guacgaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uua~~~~~ ~~~~~~~~|| ||| // LOCUS C.ribicola 5903 bp RNA RNA 11-JAN-191 DEFINITION Cronartium ribicola. ACCESSION No information KEYWORDS No information. SOURCE Cronartium ribicola. ORGANISM Cronartium ribicola. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M94338 BASE COUNT 493 a 325 c 441 g 501 t 4143 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC N-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaa--uu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGA-U GAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGA G-GGCC(U-G AGAAAC)GGC CCUC-AAAUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGUAUG- -GCUC(---- ---uuua)GG GU-CU-UACA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-ACG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggc uucug-auga uuggu--c-u g-cc---uuu uggugugu-- ---------- 1801 ---------- --ac-ugguu u-g---uugg ---aagc--u u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--uucaaug cacu(-uuac 2161 ug----)gg- ---------- ---------- -ugu-ugaa- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UUUGCCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA---ugu 2581 guga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UACAUCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGU-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---ACUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUUAAGGGU- UCAAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UG|--- 3421 --gggau-ca gac-a-a-gg au--(---uu auaau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-gu-uug-g ca-ccc---- ---------- ----aaAG(- 3661 GAAAC)CUu- -AAGUu---u aGGU|-U|C- GUGGGGGAGU AC--GG-UC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cagu-aagga uugacaga(u ugauagc)-- --uuuuucuu gauu-uugug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-CU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUc- u--agcuggc ---------u acg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggcua-uu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-a -a-c(----- 5041 --guuua-)g uuga-U-GGA AGUU-GGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CCAAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ua ucc(gaaa-) ggauu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuu ggu-c-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-AUG (-UCAUCAG- )CAUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gagg-c gu-ucgga-g agc-cuau-a aag-agcug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ca gcac-uuua- 5761 cug----guu -caaa-|guu -cuacaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS P.harkness 5903 bp RNA RNA 11-JAN-191 DEFINITION Peridermium harknesseii. ACCESSION No information KEYWORDS No information. SOURCE Peridermium harknesseii. ORGANISM Peridermium harknesseii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M94339 BASE COUNT 496 a 325 c 442 g 504 t 4136 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaa--uu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGA-U GAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-UGAUU- CCG|GAGAGA G-GGCC(U-G AGAAAC)GGC CCUC-AAAUC (UAAG-)GAU 1261 -UGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGUAUG- -GCUC(---- ---uuua)GG GU-CU-UACA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGUUG-ACG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggc uucug-auga uuggu--c-u g-cc---uuu uggugugu-- ---------- 1801 ---------- --ac-ugguu u-g---uu-- --ggaagc-u u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--uucaaug cacu(-uuac 2161 ug----)gg- ---------- ---------- -ugu-ugaa- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UUUGCCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA---ugu 2581 guga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UUA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UACAUCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGU-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---ACUUCAU -UGA-U|CA- A-GAACGAAG 3301 GUUAAGGGU- UCAAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UG|--- 3421 --gggau-ca gac-a-a-gg auuu(----- auaau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-gu-uug-g ca-ccc---- ---------- ----aaAG(- 3661 GAAAC)CUu- -AAGUu---u aGGU|-U|C- GUGGGGGAGU AC--GG-UC( --ACAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 cagu-aagga uugacaga(u ugauagc)-- --uuuuucuu gauu-uugug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-CU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUc- u--agcuggc ---------u acg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggcua-uu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-a -a-c(----- 5041 --guuua-)g uuga-U-GGA AGUU-GGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CCAAG----- ---------- 5281 ---(------ ----)[ccag ugaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ua ucc(gaaa-) ggauu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuu ggu-c-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-AUG (-UCAUCAG- )CAUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCNNC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gagg-c gu-ucaga-g agc-cuau-a aag-agcug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ca gcac-uuua- 5761 cug----guu -caaa-|guu -cuacgaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS R.glutinis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X60180 ID RGSRSRNA standard; DNA; FUN; 1804 BP. XX AC X60180; XX DT 12-OCT-1992 (Rel. 33, Created) DT 12-OCT-1992 (Rel. 33, Last updated, Version 2) XX DE R.toruloides (telemorph), R.glutinis (anamorph) small ribosomal DE subunit RNA gene XX KW small ribosomal subunit RNA. XX OS Rhodosporidium toruloides OC Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; OC Pyrenomycetes; Sordariales; Sordariaceae. XX OS Rhodotorula glutinis OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. XX RN [1] RP 1-1804 RA De Wachter R.; RT ; RL Submitted (23-JUN-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Univ of Antwerp, Universiteitsplein 1, B-2610 RL Antwerp, BELGIUM XX RN [2] RP 1-1804 RA Van de Peer Y., Hendriks L., Goris A., Neefs A., Vancanneyet M., RA Kersters K., Berny J.F., Hennebert G.L., De Wachter R.; RT "Evolution of Basidiomycetous Yeasts as Deduced from small RT ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:250-258(1992). XX CC See X60179 to X60183 for associated Basidiomycetious yeast small CC ribosomal subunit RNA sequences. XX FH Key Location/Qualifiers FH FT rRNA 1..1804 FT /product="small ribosomal subunit RNA" XX SQ Sequence 1804 BP; 470 A; 374 C; 479 G; 481 T; 0 other; BASE COUNT 470 a 374 c 479 g 481 t 4099 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------uu aagcaa---u ---------- -aa-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- cau-aguc-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -ga|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGA-U GAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGA G-GGCC(U-G AGAAAC)GGC CCUC-AGGUC (UAAG-)GAc 1261 aCGCAGC-A- ---------| GGC-GC-GC- AAAUU-AUCC -CCUGGC-A( -acacuu-)U 1321 GCCG-A-GAU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCUC(---- ---uuac)GG GU-CU-UGCA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CCG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggg cucug-ca-g cc-gg--u-c c-gc-(cuuc uug)-gug-- ---------- 1801 ---------- --ug-uacuu g-u----uug guggagcc-u u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--ag-cgau gucc(-uuca 2161 cu----)gg- ---------- ---------- -gugucguu- gcaa------ ---------- 2221 ---------- --accaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgc 2581 gcgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-CAUU 2821 -UU-GUUGGU -UU-CU---- -----GAGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGUCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GAAGGGGGA- UCGAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU CU--UCU-GU AAACUAUGCC AAU|UG|--- 3421 --gggau-cg gca-c-a-gg au--(---uu uuaau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ug-ucg-g ca-cccg--- ---------- ----aaGA(- 3661 GAAA-)UCu- -uuaaa--ug aGGU|-U|C- GGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugauagc)-- --ucuuucuu gauc-uugug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGAcc a--gccggc- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu agcugc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gU-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-a -g-c(----- 5041 --guuua-)g cuga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 accaccu-uu gcc(ggaa-) ggcau----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- uGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAU (-UCAUCAG- )AUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-ccgga-u ugg-cuau-u ggg---agcu ---------- ---------- 5701 -------(cg cg----)--- ---------- ---------- -------agc agac-cuga- 5761 cug----ccg -agaa-|guu -guacgaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.roseus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X60181 ID SRSRSRNA standard; DNA; FUN; 1806 BP. XX AC X60181; XX DT 12-OCT-1992 (Rel. 33, Created) DT 12-OCT-1992 (Rel. 33, Last updated, Version 2) XX DE S.roseus (anamorph) small ribosomal subunit RNA gene XX KW small ribosomal subunit RNA. XX OS Sporobolomyces roseus OC Eukaryota; Plantae; Thallobionta; Basidiomycotina. XX RN [1] RP 1-1806 RA De Wachter R.; RT ; RL Submitted (23-JUN-1991) on tape to the EMBL Data Library by: RL R. De Wachter, Univ of Antwerp, Universiteitsplein 1, B-2610 RL Antwerp, BELGIUM XX RN [2] RP 1-1806 RA Van de Peer Y., Hendriks L., Goris A., Neefs A., Vancanneyet M., RA Kersters K., Berny J.F., Hennebert G.L., De Wachter R.; RT "Evolution of Basidiomycetous Yeasts as Deduced from small RT ribosomal subunit RNA sequences"; RL Syst. Appl. Microbiol. 15:250-258(1992). XX CC *source: strain=MUCL 30251; XX CC See X60179 to X60183 for associated Basidiomycetious yeast small CC ribosomal subunit RNA sequences. XX FH Key Location/Qualifiers FH FT rRNA 1..1806 FT /product="small ribosomal subunit RNA" XX SQ Sequence 1806 BP; 477 A; 368 C; 472 G; 488 T; 1 other; BASE COUNT 477 a 368 c 472 g 488 t 4098 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------uu aagcaa---u ---------- -aa-acggug aa-]------ 181 -----|---A CU|G-UGAA- UGGCU-CAUU AAAu-cagu- cau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accc---uac 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGA-U GAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGA G-GGCC(U-G AGAAAC)GGC CCUC-AGGUC (UAAG-)GAC 1261 ACGCAGC-A- ---------| GGC-GC-GC- AAAUU-AUCC -CCUGGC-A( -acacuu-)U 1321 GCCG-A-GAU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCUC(---- ---uuac)GG GU-CU-UGCA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CCG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggc nccug-au-g gccgg--u-c c-gcc(-uuc uu-)ggug-- ---------- 1801 ---------- --ug-uacuu g-cu----ca ucgggcgc-u u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--uc-ugau gucc(-uuua 2161 uu----)gg- ---------- ---------- -gugucaga- gcaa------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UACGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgc 2581 gcgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-CAUU 2821 -UU-GUUGGU -UU-CU---- -----GAGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 -ugGGGGGCA UU|--UGUAU UCCGUCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAG 3301 GAAGGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU CU--UCU-GU AAACUAUGCC AAU|UG|--- 3421 --gggau-ua gca-c-a-gg au--(---uu ucaau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ug-uua-g ca-cccg--- ---------- ----aaGA(- 3661 GAAA-)UCu- -uuaaa--ug AGGU|-U|C- GGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugauagc)-- --ucuuucuu gauc-uugug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGAcc a--gucgac- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------guu gacugc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gu-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-a -g-c(----- 5041 --guuua-)g cuga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-uu gcc(ggaa-) ggcau----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGAU-G-GGG AUAGAACAU( UGCAAUUA)U UGUUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAU (-UCAUCAG- )AUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-c cu-ccgga-u ugg-cuau-u gga-auccc- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- --------gg gaau-cuaa- 5761 cug----ccg -agaa-|guu -guacgaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-Ustila 5903 bp RNA RNA 13-JAN-1999 DEFINITION Ustilaginomycetes. ACCESSION No information KEYWORDS No information. SOURCE Ustilaginomycetes. ORGANISM Ustilaginomycetes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS U.hordei 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U00973 ID UH973 standard; DNA; FUN; 1733 BP. XX AC U00973; XX DT 21-NOV-1993 (Rel. 37, Created) DT 21-NOV-1993 (Rel. 37, Last updated, Version 1) XX DE Ustilago hordei 18S ribosomal RNA gene. XX KW . XX OS Ustilago hordei OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Teliomycetes; OC Ustilaginales; Ustilaginaceae. XX RN [1] RP 1-1733 RA Berbee M.L., Taylor J.W.; RT "Dating the evolutionary radiations of the true fungi"; RL Unpublished. XX RN [2] RP 1-1733 RA Berbee M.L.; RT ; RL Submitted (20-AUG-1993) to the EMBL/GenBank/DDBJ databases. RL Mary L. Berbee, Botany, University of British Columbia, 6270 RL University Blvd, Vancouver, B.C., V6T 1Z4, Canada XX FH Key Location/Qualifiers FH FT rRNA 1..1733 FT /product="18S rRNA" FT source 1..1733 FT /organism="Ustilago hordei" XX SQ Sequence 1733 BP; 462 A; 353 C; 462 G; 456 T; 0 other; BASE COUNT 462 a 353 c 462 g 456 t 4170 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au acgcaa-auu ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------u ucuu----gc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUGU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC-GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCCC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->GAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuu-ggu cucgg-acgc ugggu--c-- u-gc-(uuca uu-)-gca-- ---------- 1801 ---------- --ug-uacuu g-g---c-gg uccgagac-u u-ccu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cugg---uga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g--g-----c cgcc(-uuc- 2161 g-----)gg- ---------- ---------- -ugg---uc- cgga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------CAU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC A--------- ---------- ---------- ---------- 2521 ---UAGGCCC -GAAUA-UAU -UAGCAUGG- AA-----|UA -ACAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAA- CUG--CCGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGC ---------- 3001 --CGGGGGCA UU|--AGUAU UUGCACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUGCA-AAG- A-CUUCCU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGUA- UCGAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UC|--- 3421 --cgaau-cg guc-g-a-ug cu--(--cau uucacu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-ga-ucg-g cg-cggu--- ---------- ----acGA(- 3661 GAAA-)UCA- -AAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCGGG UC[cgg-aca 4081 uagu-aagga uugacaga(u ugauggc)-- --gcuuucau gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U-GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-GA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGAC- ---ggguuga ca-------a uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ----uguugg ccccuuau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gU-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-aucga -c-c(----- 5041 --gucua-)g guga-U-GGA GGCA-AAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CCGG-GCUGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[acaa cgagugg--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 uuccccu-ug ucc(gaaa-) ugacu----g gguaaa-cuu gugaaa]--- ---------- 5461 -------cuu ugu-c-g--- uGCU-G-GGG AUGGAGCUU( UGUAAUUU)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-a cu-uggga-g agu-acau-c ggggagcca- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- --------ug gcac-ccug- 5761 acg----gcu -caaa-|cuc -uuacaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUnnnnn nnnnnnn--- 5881 --nnn----- -------~|| ||| // LOCUS U.maydis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X62396 ID UMSSRRNA standard; DNA; FUN; 2209 BP. XX AC X62396; XX DT 13-MAR-1992 (Rel. 31, Last updated, Version 2) DT 13-MAR-1992 (Rel. 31, Created) XX DE U.maydis gene for small subunit ribosomal RNA XX KW small subunit ribosomal RNA; small subunit rRNA; KW small subunit rRNA gene. XX OS Ustilago maydis OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Teliomycetes; OC Ustilaginales; Ustilaginaceae. XX RN [1] RP 1-2209 RA De Wachter R.; RT ; RL Submitted (19-DEC-1991) on tape to the EMBL Data Library by: RL R. De Wachter, University of Antwerp (U I A ), Universiteitsplein RL 1, B-2610 Antwerp, BELGIUM XX RN [2] RP 1-2209 RA De Wachter R., Neefs J.M., Goris A., Van de Peer Y.; RT "The gene coding for small ribosomal subunit RNA in the RT basidiomycete Ustilago maydis contains a group I intron"; RL Nucleic Acids Res. 20:1251-1257(1992). XX CC *source: strain=MUCL 30488, CBS 445.63; XX FH Key Location/Qualifiers FH FT rRNA join(1..1158,1570..2209) FT /product="small subunit rRNA" FT exon 1..1158 FT /number=1 FT intron 1159..1569 FT /number=1 FT exon 1570..2209 FT /number=2 XX SQ Sequence 2209 BP; 603 A; 453 C; 582 G; 571 T; 0 other; BASE COUNT 481 a 362 c 474 g 481 t 4105 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au acgcaa-auu ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------u ucuu----gc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUGU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCCC(---- ---uuuu)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->GAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaguuu-ggu cucgg-acgc ugggu--c-- u-gc-(uuaa uu-)-gca-- ---------- 1801 ---------- --ug-uacuu g-a---c-gg uccgagac-u u-ccu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg---uga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g--g-----c cgcc(-cuc- 2161 g-----)gg- ---------- ---------- -ugg---uc- cgga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UAU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc a--------- ---------- ---------- ---------- 2521 ---UAGGCCC -GAAUA-UAU -UAGCAUGG- AA-----|UA -ACAGAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAA- CUG--CCGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGC ---------- 3001 --CGGGGGCA UU|--AGUAU UUGCACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUGCA-AAG- A-CUUCCU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGUA- UCGAAAACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UC|--- 3421 --cgaau-cg guc-g-a-ug cu--(--cau uucacu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-ga-ucg-g cg-cggu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUu--uu uGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCGGG UC[cgg-aca 4081 uagu-aagga uugacaga(u ugauggc)-- --gcuuucau gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-GA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGAc- ---ggguuga ca-------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ----uguugg ccccuuau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gU-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACa-aucga -c-c(----- 5041 --gucua-)g guga-U-GGA GGCA-AAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CCGG-GCUGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[acaa cgagugg--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 agccccu-ug ucc(gaaa-) ugacu----g gguaaa-cuu gugaaa]--- ---------- 5461 -------cuu ugu-c-g--- uGCU-G-GGG AUGGAGCUU( UGUAAUUU)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-a cu-uggga-g agu-acau-c ggggagcca- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ug gcac-ccug- 5761 acg----gcu -caaa-|cuc -uuacaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UUU~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Chytri 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS A.macrogyn 5903 bp RNA RNA 11-JAN-191 DEFINITION Allomyces macrogynus. ACCESSION No information KEYWORDS No information. SOURCE Allomyces macrogynus. ORGANISM Allomyces macrogynus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23936 BASE COUNT 491 a 362 c 481 g 544 t 4025 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 AAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-uuu ---------- -auacaagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aauu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acccuuuuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gggucauuc -aa|auuucu gc|--CCU-A UCA--ACUGU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCAG-- -GACC(---- ---uuuu)GG UC-UU-UGCA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-aag gguuu-uuuu cguag--c-u a-gccauugu ucccuuu--- ---------- 1801 ---------- --gc-gguca a-ugu-gcau uuggcuac-- a-ggccc--- -----uuuuu 1861 uu-------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------cug cuagg-ag-- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------au g-cggcucuu -cug(-cuu- 2161 gu----)ca- ---------- ---------- -gcggggcug cagu------ ---------- 2221 ---uu----- -uccuagcac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu uuuu------ --c------- ---------- ---------- 2521 ---UUUGCCU -GAAUA-UCU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cuu 2581 -ugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CUA--GAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAGGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-cg ggc-g-c-uu gu--(aguuu uuccaaaaa) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-a c-gc-ccg-g ca-ccuu--- ---------- ----uuGA(- 3661 GAAA-)UCa- -aAGUU-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggu-aagga uugacaga(u ugaaagc)-- --ucuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUCG- U|GGA(-UUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-UU|- ---------- 4321 ------(--- --)[CCU-AC UCGUUACuug c--ucauggg ---------u uuua-u---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------cuca uggcacgc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-GU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGCGG---]- --|------- ---------- GACU-Gcu-g -g-c(----- 5041 --guuua-)g ccag-A-GGA AGUU-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GC-GC A-CGCGCGCU ACACU--G-A UGCAG----- ---------- 5281 ---(------ ----)[ucag caaguuu--- ---------- ---------- ---------u 5341 -uuaacuggc uguaguucu( -uucg)ggag cuauggucg- ---------- ---------- 5401 auuuccu-ug ccc(gaaa-) ggguu----g gguaau-cuu uugaaa]--- ---------- 5461 -------cug cau-c-G--- UGAU-G-GGG AUCGACCUU( UGUAAUUA)U CGGUCGUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-UGU-GGG (-UCAUCAG- )CCCAC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGcuu- 5641 agu-gaga-u uu-uugga-u ugu-ug-a-g cga-uugca- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ug uga--acgc- 5761 ccg----acg -agaa-|auu -gaucaaacu ug-guc-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS B.emersoni 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M54937 LOCUS BSIRG16SL 1901 bp ds-DNA PLN 29-JAN-1991 DEFINITION Blastocladiella emersonii ribosomal RNA small subunit (16S-like) gene. ACCESSION M54937 KEYWORDS ribosomal RNA small subunit. SOURCE B.emersonii (strain L17) zoospore DNA. ORGANISM Blastocladiella emersonii Eukaryota; Fungi; Eumycota; Mastigomycotina; Chytridiomycetes; Blastocladiales; Blastocladiaceae. REFERENCE 1 (bases 1 to 1901) AUTHORS Forster,H., Coffey,M.D., Elwood,H. and Sogin,M.L. TITLE Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution JOURNAL Mycologia 82, 306-312 (1990) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1901 /product="small subunit ribosomal RNA" /gene="rRNA small subunit" BASE COUNT 490 a 368 c 501 g 541 t 1 others ORIGIN BASE COUNT 490 a 368 c 501 g 541 t 4003 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 AAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacugcuuu ---------- -auacaagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aauu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accccauuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gggucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGACGGUA- 1141 GG(-AUAGAG G)CCU-ACCG U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCGG-- -GGCC(---- ---uuuu)GG CC-AU-CGCA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-agg gcugu-cuuu gucac--c-u g-gcc(-acu ---)gagc-- ---------- 1801 ---------- -cu--uurcg g-cca-gugu ugcuuucggg u-gcggg--- -----cccuu 1861 uauu------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ucu gcugg-gugc 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc c-uuuggg-u uggc(-uuu- 2161 -u----)gc- ---------- ---------- -uagcucgg- ggga------ ---------- 2221 ---u-----g ucugcccagc ac-------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu uuuu------ --u------- ---------- ---------- 2521 ---UAAGCUU -GAAUA-UCU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cuc 2581 -ugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----GGGA- CUG-GAGUAA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAGGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-cg ggc-g-u-ca ugu-(aguua uucacauaa) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---aagac-g c-gc-ccg-g ca-ccuu--- ---------- ----uuGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggu-aagga uugacaga(u ugaaagc)-- --ucuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUCG- U|GGA(-UUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-GA|- ---------- 4321 ------(--- --)[UCU-GC UAAUUAGuug g--gcuugca ---------u uua------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ugca aguaaucc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGA---]- --|------- ---------- GACU-Gcu-g -g-c(----- 5041 --guuua-)g ccag-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UAAGG----- ---------- 5281 ---(------ ----)[ucag cgaguuu--- ---------- ---------- -----caacu 5341 -ugcuggcuu aaguugagu( -uucg)gcuc ggcuuaagcu ggg------- ---------- 5401 -auuccu-ug gcc(guga-) ggucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------ccu uau-c-g--- UGAU-G-GGG AUUGACCUU( UGUAAUUA)U CGGUCAUG-A 5521 ACGAGG-AAU A--CCUAGUA AG-UGU-GGG (-UCAUCAA- )CCCAC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGcuu- 5641 agu-gaga-u uu-uugga-u ugc-cg-g-g uga-uugca- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ug cga--acac- 5761 uug----gcg -agaa-|auu -gcucaaacu ug-guc-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.conferva 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M59758 LOCUS CHDRG18S 1707 bp ds-DNA PLN 10-MAR-1992 DEFINITION Chytridium confervae 18S ribosomal RNA gene, partial. ACCESSION M59758 KEYWORDS 18S ribosomal RNA. SOURCE Chytridium confervae (strain 81-1) (library: U.C. Microgarden, Berkeley) DNA. ORGANISM Chytridium confervae Eukaryota; Fungi; Eumycota; Chytridiomycetes; Chytridiales; Operculatae; Chytridiaceae. REFERENCE 1 (bases 1 to 1707) AUTHORS Bowman,B.H., Taylor,J.W., Brownlee,A.G., Lee,J., Lu,S.-D. and White,T.J. TITLE Molecular evolution of the fungi: Relationship of the basidiomycetes, ascomycetes, and chytridiomycetes JOURNAL Mol. Biol. Evol. 9, 285-296 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA <1..>1707 /note="PCR-derived sequence" /note="About 38 bp are missing at the 5' end, and 49 bp at the 3' end of the rRNA." /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 470 a 315 c 438 g 484 t ORIGIN BASE COUNT 470 a 315 c 438 g 484 t 4196 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGC|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUCCAG-- -GGC-(---- ---uuag)-G UC--U-UGGA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAUAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-ggg ccggg-uuug aaggu--c-g u-gcc(-aau ---)ggca-- ---------- 1801 ---------- -u-g-u-acu u-uc------ ggccugguc- u-uucc---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu gugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--acgug-u gcac(-uuua 2161 cu----)gu- ---------- ---------- -gugugcgu- ggga------ ---------- 2221 ---u------ ---ccauaac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUUAA- AG--CGGGCa ---------- ---------- ---------- ---------- 2521 ---uUUGCUU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cuu 2581 -ugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- -----GGAG- CCG--AAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UAAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAAUU-AAG- A-CAAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UG--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-u-ug ua--(----u uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-a c-gu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-A|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[UCU-GC UAAAUAGUug c--auucac- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gugg augac--c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGA]---- --|------- ---------- GACU-Aug-u -a-c(----- 5041 --guuua-)g uacg-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAAUG----- ---------- 5281 ---(------ ----)[gcag caaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -ucaccu-ug gcc(ggaa-) ggccu----g gguaau-cuu cugaaa]--- ---------- 5461 -------cau ugu-c-g--- UGCU-G-GGG AUUGUCCCU( UGCAAUUA)U UGGACAUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c cu-ccgga-u uga-aagc-u cuu-gggca- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ug cccg-auag- 5761 cug----uug -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Neocall.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M59761 LOCUS NEORR18S 1717 bp ds-DNA PLN 10-MAR-1992 DEFINITION Neocallimastix sp. 18S ribosomal RNA gene, partial. ACCESSION M59761 KEYWORDS 18S ribosomal RNA. SOURCE Neocallimastix sp. (strain LM-2) (library: CSIRO, Animal Production, Prospect, NSW) DNA. ORGANISM Neocallimastix sp. Eukaryota; Fungi; Eumycota; Mastigomycotina; Chytridiomycetes; Neocallimasticaceae. REFERENCE 1 (bases 1 to 1717) AUTHORS Bowman,B.H., Taylor,J.W., Brownlee,A.G., Lee,J., Lu,S.-D. and White,T.J. TITLE Molecular evolution of the fungi: Relationship of the basidiomycetes, ascomycetes, and chytridiomycetes JOURNAL Mol. Biol. Evol. 9, 285-296 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA <1..1717 /note="PCR-derived sequence" /note="About 38 bp are missing from the 5' end, and 49 bp from the 3' end of 18S rRNA." /product="18S ribosomal RNA" /gene="18S rRNA" unsure 1374..1406 /note="Unsure sequence is identical to the sequences of three other fungi in this study" BASE COUNT 486 a 304 c 408 g 519 t ORIGIN BASE COUNT 486 a 304 c 408 g 519 t 4186 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaauucu ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acca--uuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCUA(---- ---uuu-)UA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC CUU---AU-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-gga cuuga-cu-g uacga--u-u c-uaca(ucu )u--guag-- ---------- 1801 ---------- --cu--auug u-a----cug gucuuguc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cuag----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c-uuuau gcac(-uuca 2161 uu----)gu- ---------- ---------- -guguacug- ggga------ ---------- 2221 ---u------ ---cuaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUUAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UAUGCUU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---c-u 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--AAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UAUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-cg uu--(---ua auuauu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUA c--gcgaau- --------au uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------auu cgugguuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aua-g -a-u(----- 5041 --uuuua-)a ucua-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -cauccu-ug auc(ggaa-) ggucc----g gguaau-cuu uugaaa]--- ---------- 5461 -------cuu cau-c-g--- UGCU-G-GGG AUAGUCCCU( UGCAAUUU)U UGGACUUA-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAA- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gaa--u cu-ucgga-u ugg-cuau-u uuu-uucug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ca gaau-uaaa- 5761 cug----cua -aaaa-|guu -gggcaaacu ug-guc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS S.acuminat 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M59759 LOCUS SPZRR18S 1718 bp ds-DNA PLN 10-MAR-1992 DEFINITION Spizellomyces acuminatus 18S ribosomal RNA gene, partial. ACCESSION M59759 KEYWORDS 18S ribosomal RNA. SOURCE Spizellomyces acuminatus (strain 62A) (library: Biosystems Research Center Ottawa) DNA. ORGANISM Spizellomyces acuminatus Eukaryota; Fungi; Eumycota; Mastigomycotina; Chytridiomycetes; Chytridiales. REFERENCE 1 (bases 1 to 1718) AUTHORS Bowman,B.H., Taylor,J.W., Brownlee,A.G., Lee,J., Lu,S.-D. and White,T.J. TITLE Molecular evolution of the fungi: Relationship of the basidiomycetes, ascomycetes, and chytridiomycetes JOURNAL Mol. Biol. Evol. 9, 285-296 (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA <1..>1718 /note="PCR-derived sequence" /note="About 38 bp are missing from the 5' end and 49 bp from the 3' end of the 18S rRNA." /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 476 a 325 c 442 g 474 t 1 others ORIGIN BASE COUNT 476 a 325 c 442 g 474 t 4186 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUC(---- ---uuac)GA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-gga ccugg-cu-g ggcgg--ucu u-gcc-(gaa a)--ggua-- ---------- 1801 ---------- --ag-cacug c-u----cug gucggguc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--ca-gcgu gcuc(-uuaa 2161 uu----)ga- ---------- ---------- -gugcgcug- ggga------ ---------- 2221 ---u------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUUAA- AG--CAGGCa ---------- ---------- ---------- ---------- 2521 ---UACGCUU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---c-u 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--AAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-cg uu--(---aa cuuauu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-NG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUA c--accaau- ---------g gaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------auu ggug-gau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Gug-g -a-u(----- 5041 --guuua-)a ucca-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[gcag caaguaa--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uucaccu-ug gcc(ggaa-) ggucu----g gguaau-cuu cugaaa]--- ---------- 5461 -------cuu cau-c-g--- UGCU-G-GGG AUUGUCCAU( UGCAAUUA)U UGGACAUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gag--c cu-ccgga-u ugg-gagc-u ugg-uaccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-cgag- 5761 cuca---cug -agaa-|guu -gggcaaacu ug-guc-a-u uuag-AGGAA Gn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Zygomy 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS E.pisiform 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58724 ID EP18SRRNA standard; DNA; FUN; 1703 BP. XX AC X58724; XX DT 27-APR-1992 (Rel. 31, Created) DT 27-APR-1992 (Rel. 31, Last updated, Version 2) XX DE E.pisiformis 18S rRNA gene XX KW 18S ribosomal RNA. XX OS Endogone pisiformis OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1703 RA Simon L.; RT ; RL Submitted (07-MAY-1991) on tape to the EMBL Data Library by: RL L. Simon, Universite Laval, Sciences forestieres, 4145 RL Abitibi-Price, Sainte-Foy, Quebec, CANADA XX RN [2] RA Simon L., Lalonde M., Bruns T.D.; RT "Specific amplification of 18S Fungal ribosomal genes from RT vesicular-arbuscular endomycorrhizal fungi colonizing roots"; RL Appl. Environ. Microbiol. 58:291-295(1992). XX FH Key Location/Qualifiers FH FT rRNA 1..1703 FT /product="18 S rRNA" XX SQ Sequence 1703 BP; 463 A; 320 C; 439 G; 481 T; 0 other; BASE COUNT 463 a 320 c 439 g 481 t 4200 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nn nnnnnnnuuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------u accu--uuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAU-U UAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCC--G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCCu(---- ---uuuu)gG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-agc ucugg-cu-g ggcgg--u-c c-ugcc(uuu ac)ggugg-- ---------- 1801 ---------- --g--uacua c-uuu----g gcuggggu-u c-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag c--uggca-u guuc(-uuaa 2161 cu----)gg- ---------- ---------- -auguguca- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUUAA- AG--CAGGCa ---------- ---------- ---------- ---------- 2521 ---UCCGCUU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA----cu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--AGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug u---(----- uuacu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------ac-u c-gu-ucg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GCGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GC 4021 GACGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuua g--gccaac- ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu uggucguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auu-g -a-c(----- 5041 --gacua-)g ucaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGAAG----- ---------- 5281 ---(------ ----)[ucag caaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-ug guc(ggaa-) gaucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CGU-C-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagu-c cc-ucgga-u ugg-agcc-c agaaguug-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ca acau-ccag- 5761 gug----cug -agaa-|guc -gggcaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS E.aulicae 5903 bp RNA RNA 12-JUN-1996 DEFINITION Entomophaga aulicae.; . ACCESSION U35394 KEYWORDS . SOURCE Entomophaga aulicae. ORGANISM Entomophaga aulicae. REFERENCE 1 (bases 1 to 6326) AUTHORS Silver,J., Walsh,S.R.A., Tyrrell,D. and Hajek,A.E. TITLE Direct Submission JOURNAL Submitted (05-SEP-1995) Julie Silver, Microbiology, University of Toronto, 1265 Military Trail, Scarborough, Ontario M1C 1A4, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U35394 BASE COUNT 525 a 307 c 450 g 571 t 4050 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaa-aa ---------- -ua-caagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-aagu- uau-aauu-- ----uauuug 241 aucu<----- ---------- ---------- ---------- ---------u aucu---uac 301 c>A-GUGG-A UAUCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- --AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuu-uuag gaucaugaga gguugauggc agguuuugca uucauuu--- ---------- 1801 ---------- ---g-ua--- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ------gaga 1921 uuug------ ucuug----- ---------- ---------- ---aucuuuu gggguucuaa 1981 uacguuauau cucuagucuu ugggcuuaga uguug----- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- c-c-u-uu-- ---a------ 2161 -c-----ug- ---------- ---------- -gu------- ---------- ---------- 2221 ---------- ---------- ---------- --agugucua ggucauuucu cuucggagag 2281 ggcuagggau gauu------ ---------- ---------- ---------- ----acu--- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ----UUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGC- ---------- ---------- -uuuaguccu ---------- 2521 ---------- -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAaa-ua -aga--c-uu 2581 u-gg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u --uu--UAUU 2821 -UU-GUUGGU -UU------- cuaaaacuaa a------GGA A--UGAUGAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|UGGU ---------- 3001 --UGGGGUCA UU|--AGUAU UUUAUUG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGAC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---AUCUCAU -UGA-U|-A- A-GGACGAAA 3301 GUU-GGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gggau-ca ggg-c-u-cu au--(--uua auu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gag-a g-uc-uug-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-G- 4021 --CCGGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugauagc)-- --uuuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-UU|- ---------- 4321 ------(--- --)[ucu--u uaacuaguau gcucaau--c ---------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 -------uag au-------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----ugg-- --guagc--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AAAGA---]- --|------- ---------- GACU-guu-a -a-c(----- 5041 --guuua-)g uuga-c-GGA AGUU-GAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UAAAU----- ---------- 5281 ---(------ ----)[ucaa caaguu---- ---------- ---------- uuacuuuauu 5341 guaaucu--- ---------- ---------- ---------- ---------- ---------- 5401 ----ccu-ug gcc(guaa-) ggucc----g gguaaucuuu uugaaa]--- ---------- 5461 -------cuu uau-c-g--- UGAU-G-GGG AUUAUCCAU( UGCAAUUA)U UGGAUAUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CAC-AUG (-UCAUCAG- )CAUGU-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGguuu- 5641 agu-gaga-c uu-uugga-u ugu-gauu-a agg-aacug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg guuu-cuug- 5761 auu----gug -agaa-|guu -agucaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS E.muscae 5903 bp RNA RNA 11-JAN-191 DEFINITION Entomophthora muscae. ACCESSION No information KEYWORDS No information. SOURCE Entomophthora muscae. ORGANISM Entomophthora muscae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D29948 ID EMRNAC standard; RNA; FUN; 1799 BP. XX AC D29948; XX DT 04-JUN-1994 (Rel. 39, Created) DT 04-JUN-1994 (Rel. 39, Last updated, Version 1) XX DE Entomophthora muscae rRNA. XX KW . XX OS Entomophthora muscae OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Entomophthorales; Entomophthoraceae. XX RN [1] RP 1-1799 RA Nagahama T., Sato H., Shimazu M., Sugiyama J.; RT "Phylogenetic divergence of the entomophthoralean fungi:evidence RT from nuclear 18S ribosomal RNA gene sequence"; RL Unpublished. XX CC Submitted (14-Apr-1994) to DDBJ by: Takahiko Nagahama Institute of CC Molecular and Cellular Bioscience 1-1-1 Yayoi, Bunkyo-ku Tokyo 113 CC Japan Phone: 03-3812-2111 Email: jsugi@tansei.cc.u-tokyo.ac.jp Fax: CC 03-3818-0444 XX FH Key Location/Qualifiers FH FT rRNA 1..1799 FT source 1..1799 FT /organism="Entomophthora muscae" FT /sequenced_mol="rRNA" XX SQ Sequence 1799 BP; 509 A; 303 C; 436 G; 551 T; 0 other; BASE COUNT 509 a 303 c 436 g 551 t 4104 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuaaacc ------u--- -ua-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aauu-- ----uauuug 241 aucu<----- ---------- ---------- ---------- ---------u uccu---uac 301 c>A-GUGG-A UAUCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -auaucauaa -aa|auuucu gc|--CCU-A UCA--acuUU -CGAUGGUA- 1141 AG(-GUAGUG G)CUU-ACCA U-|GGUUU-U UAC|GGGU-G A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUcuagg- -gccu(---- ----uua)ag gu-ca-uagA A-UUGGAAU- 1501 ------GAGU ----ACAAAU -UAAA--ACU AUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuuuaga acauuggagg gu-------- ---------- -----ua--- ---------- 1801 ---------- ---g-uuuc- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- --ag------ 1921 ---------u ucuugg---- ---------- ---------- ----cauuua uguuagguuc 1981 agugcuggcu uuucagguuc uauuacuuua uaucucuggc cuuugggc-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---a------ 2161 -u-----ug- ---------- ---------- -gug------ ---------- ---------- 2221 ---------- ---------- ------cugc cuuuacuggu agugucuuug ucauuucucu 2281 ucggagaggg cuagggauga uu-------- ---------- ---------- ----acu--- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ----UUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGC- ---------- ---------- -uuuaugccu ---------- 2521 ---------- -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAaa-ua -gga--c-uu 2581 u-gg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u --uu--UAUU 2821 -UU-GUUGGU -UU------- cuaaaacuga a------GGA A--UGAUGAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGU|UGGU ---------- 3001 --UGGGGUCA UU|--AGUAU UUUAUUG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGAC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---AUCUCAU -UGA-U|CA- A-GGACGAAA 3301 GUUGGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gggau-ca gua-u-u--- -cc-----au uuau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gag-a a-ua-uug-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugauagc)-- --uuuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-UU|- ---------- 4321 ------(--- --)[UCU--u uaacuag-ug guaucaau-c ---------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 -------uag au-------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uggu- ---gc-ac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AAAGA---]- --|------- ---------- GACU-guu-g -a-u(----- 5041 --guuua-)a uuaa-c-GGA AGUU-GAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa caagug---- ---------- ---------- acacuuuuag 5341 ugguau---- ---------- ---------- ---------- ---------- ---------- 5401 ----ccu-ug gcc(guaa-) ggucu----g gguaaucuuu uugaaa]--- ---------- 5461 -------cuu cau-c-g--- UGAU-G-GGG AUUAUCCAU( UGCAAUUA)U UGGAUAUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CAU-AUG (-UCAUCAG- )CAUAU-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGguuu- 5641 agu-gaga-c uu-uugga-u ugu-gauu-g aug-gacug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gacc-auca- 5761 ugu---aucg -agaa-|guu -agucaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUA~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Z.radica.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Zoophthora radicans subsp. Zoophthora culisetae. ACCESSION No information KEYWORDS No information. SOURCE Zoophthora radicans subsp. Zoophthora culisetae. ORGANISM Zoophthora radicans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D29949 LOCUS ZORRNAD 1743 bp ss-rRNA RNA 11-MAY-1994 DEFINITION Zoophthora radicans rRNA. ACCESSION D29949 KEYWORDS . SOURCE Zoophthora culisetae (strain F853) rRNA. ORGANISM Zoophthora culisetae Eukaryota; Fungi; Ascomycota; Zygomycotina; Zygomycetes; Entomophthorales; Entomophthoraceae. REFERENCE 1 (bases 1 to 1743) AUTHORS Nagahama,T., Sato,H., Shimazu,M. and Sugiyama,J. TITLE Phylogenetic divergence of the entomophthoralean fungi:evidence from nuclear 18S ribosomal RNA gene sequence JOURNAL Unpublished (1994) STANDARD full automatic COMMENT Submitted (14-Apr-1994) to DDBJ by: Takahiko Nagahama Institute of Molecular and Cellular Bioscience 1-1-1 Yayoi, Bunkyo-ku Tokyo 113 Japan Phone: 03-3812-2111 Email: jsugi@tansei.cc.u-tokyo.ac.jp Fax: 03-3818-0444. NCBI gi: 484307 FEATURES Location/Qualifiers rRNA 1..1743 source 1..1743 /organism="Zoophthora culisetae" /strain="F853" /sequenced_mol="rRNA" BASE COUNT 482 a 316 c 438 g 507 t ORIGIN BASE COUNT 482 a 316 c 438 g 507 t 4160 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~AA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--acuUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-A-CC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUacagg- -gcuc(---- ---uuuu)gg gu-cu-uguA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-gga ccucggccag acggu----c --ugc---cu guuugg---- ---------- 1801 ---------- ---g-uac-- ---------- ---------- -guacugucu uggcuagguc 1861 uuuccuucug gagagccuag gugucguuua ---------- ---------- ---cucggc- 1921 ---------- ---------- -gucua---- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- --gg------ ---------- 2221 ---g------ ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ------gauc caggacu--- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- --------UU UACUUUG-AA AA--AAUUAG 2461 AGUGUUUAA- AG--CAGGCU u--------- ---------- ---------- ---------- 2521 -acgc--uu- -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGaa-ua -gga--c-uu 2581 u-gg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u --UC|-UAUU 2821 -UU-GUUGGU -UU------- cuaggaccaa g------GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UU|--- 3421 --gggau-cg guc-a-a-ug uu--(--auu uuau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-ga-ucg-g ca-ccau--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAauag-uu acguuuac-c ---------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- guguagacgg acaa------ ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-gcu-g -a-u(----- 5041 --guuua-)a ucag-u-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAA----- ---------- 5281 ---(------ ----)[ucaa cgaguuuu-- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 uuc--cu-ug gcc(ggaa-) ggucu----g gguaau-cuu guaaaa]--- ---------- 5461 -------uuu cau-c-G--- UGCU-G-GGG AUUGUCCAU( UGCAAUUA)U UGGACAUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGgcuu- 5641 agu-gaga-c cu-ucgga-u ugg-cguu-u ggc-agcug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ca gcag-cuaa- 5761 uug----cug -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUA~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Z.radica.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Zoophthora radicans. ACCESSION No information KEYWORDS No information. SOURCE Zoophthora radicans. ORGANISM Zoophthora radicans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D61381 LOCUS ZORRNAD 1775 bp DNA PLN 29-AUG-1995 DEFINITION Zoophthora radicans 18S rRNA gene. ACCESSION D61381 D29949 KEYWORDS 18S rRNA. SOURCE Zoophthora radicans (strain F853, ) DNA. ORGANISM Zoophthora radicans Eukaryota; Fungi; Eumycota; Zygomycotina; Zygomycetes; Entomophthorales; Entomophthoraceae. REFERENCE 1 (bases 1 to 1775) AUTHORS Nagahama,T., Sato,H., Shimazu,M. and Sugiyama,J. TITLE Phylogenetic divergence of the Entomophthoralean fungi:evidence from nuclear 18S ribosomal RNA gene sequence JOURNAL Mycologia 87, 203-209 (1995) COMMENT Submitted (22-Jun-1995) to DDBJ by: Takahiko Nagahama Institute of Molecular and Cellular Bioscience 1-1-1 Yayoi, Bunkyou-ku Tokyo 113 Japan D29949: Submitted (14-Apr-1994) to DDBJ by : Takahiko Nagahama. NCBI gi: 968907 FEATURES Location/Qualifiers source 1..1775 /organism="Zoophthora radicans" /strain="F853" /sequenced_mol="DNA" rRNA 1..1775 /product="18S rRNA" BASE COUNT 510 a 300 c 424 g 541 t ORIGIN BASE COUNT 510 a 300 c 424 g 541 t 4128 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaca--uuu ---------- -au-auagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aauu-- ----uacuug 241 auua<----- ---------- ---------- ---------- ---------u uuua---uac 301 c>A-GUGG-A UAACCGUGG( -U-AAUU)CU AUGGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -gugucaauc -aa|auuucu gc|--CCU-A UCA--acuUU -CGAUGGUA- 1141 AG(-GUAGUG G)CUU-ACCA U-|GGUUG-U AAC|GGGU-G A-CGGG|GAA -U-(AAGG-) 1201 GUU-CUAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUccagg- -gccc(---- ---uuau)gg gu-ca-uggA A-UUGGAAU- 1501 ------GAAU ----ACAAAU -UAAA--ACU CUU---AA-U GA-GGAAC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG A-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-uga gggua-ggaa gguuaagagg ggugcuggcu ---------- ---------- 1801 ---------- ----uuuguu aguauuccuc uuuucuuuua gacccucauu uuaaauuccu 1861 ggucuu---- ---------- ---------- ---------- ---------- ---------u 1921 gggccu---- ---------- ---------- ---------- ---------- ------auuu 1981 gcaacuuuac ugguguagau aggucauuuc cuu------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 -u-----ug- ---------- ---------- -gug------ -gg------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------c cagga----- 2341 ---------- ---------- ---------- ---------- -----auga- ---------- 2401 ---------- ---------- ---------- ---------U UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CGGGC- ---------- ---------u uuuuaag--- ---------- 2521 -------cc- -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAaa-ua -gga--c-ua 2581 u-gg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u --uu--UAUU 2821 -UU-GUUGGU -UU------- auaaaacuaa a------GAA A--UGAUGAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGUU|UGGU ---------- 3001 --UGGGGACA UU|--AGUAU UUAAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---AACCCAU -UGA-U|CA- A-GGACGAAA 3301 GUUGGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gggau-ug ggc-c-u--- ----(--g-a ucug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----auc-a g-gc-uca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugauagc)-- --u-uuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-UA|- ---------- 4321 ------(--- --)[UCU-GU UAAauag-ua ugcucuau-c ---------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------ua g--------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----auag- --uuuaug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGA---]- --|------- ---------- GACU-auu-a -a-c(----- 5041 --guuua-)g uuaa-u-GGA AGUU-GAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UAAAU----- ---------- 5281 ---(------ ----)[ucaa caaguu---- ---------- ---------- acacauuuau 5341 gugguau--- ---------- ---------- ---------- ---------- ---------- 5401 ----ccu-ug gcc(gaaa-) ggucc----g gguaaucuuu uugaaa]--- ---------- 5461 -------cuu uau-c-G--- UGCU-G-GGG AUAGUACAU( UGCAAUUU)U UGUACUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AUG (-UCAUCAG- )CAUGU-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGguuu- 5641 agu-gaga-c uu-cugga-u ugu-uugg-a guu-gugcu- ---------- ---------- 5701 -------(gu uu----)--- ---------- ---------- --------ca gugc-uuuu- 5761 uuag---acg -agaa-|guu -agucaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUA~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS A.rugosa 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14005 ID ARRDNASS standard; DNA; FUN; 1722 BP. XX AC Z14005; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE A.rugosa rDNA for small subunit rRNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Acaulospora rugosa OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1722 RA Simon L., Bousquet J., Levesque R.C., Lalonde M.; RT "Molecular phylogeny of the Glomaceae."; RL Unpublished. XX RN [2] RP 1-1722 RA Simon L.; RT ; RL Submitted (01-JUL-1992) on tape to the EMBL Data Library by: RL Luc Simon, Sciences Forestieres, Universite Laval, Centre de RL recherche en biologie forestiere, 4145 Abitibi-Price, Sainte-Foy, RL Quebec, G1K 7P4, Canada XX CC *source: strain=WV 935; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH XX SQ Sequence 1722 BP; 457 A; 305 C; 418 G; 475 T; 67 other; BASE COUNT 457 a 305 c 418 g 475 t 4248 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nu auaaucguua ---------- -ua-caggug aa-]------ 181 -----|---A CU|U-CGAA- UGCCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acau---uac 301 c>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGACC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucannc -aa|aunncu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-N AAC|GGGU-A A-NGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGN UACC-ACAUC (CAAG-)GAA 1261 -GGNAGN-A- ---------| GGN-GN-GN- AAAUU-ACCC -AAUCCC-A( ---aca--)N 1321 NNNN-N-NNN -|N|NNNNNN NNNN-NN--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------NN NNNNNNNNN- -NNNn(---- ---nnnn)nN NN-NU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg auuug-uc-a guugg--u-c g-gccu(-uc ac)u-guc-- ---------- 1801 ---------- --cg-uauug a-cuu----g auggauuc-u u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cuga----au 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cagca-u gcua(-uuga 2161 gu----)ua- ---------- ---------- -gugcguug- ggga------ ---------- 2221 ---a------ ---gcagauc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UAU UACCUUG-AA AA--AAUUAG 2461 AGUGCUUAA- AG--CGAGCu ---------- ---------- ---------- ---------- 2521 ---AGUGCUU -GAAUA-GAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA--cggc 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --ggaau-cg gac-g-a-ug uua-(--auu uuauaa---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g ca-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-uagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuua g--ucccucu ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gga gggucg-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --guuua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau caaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-uc acc(ggaa-) ggugu----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c uc-ucgga-u cgg-guuu-u aggaaccg-- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- --------cg gauc-cuuu- 5761 cuu----cug -agaa-|guu -ugucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS A.spinosa 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14004 ID ASRDNASS standard; DNA; FUN; 1701 BP. XX AC Z14004; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE A.spinosa rDNA for small subunit rRNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Acaulospora spinosa OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1701 RA Simon L., Bousquet J., Levesque R.C., Lalonde M.; RT "Molecular phylogeny of the Glomaceae."; RL Unpublished. XX RN [2] RP 1-1701 RA Simon L.; RT ; RL Submitted (01-JUL-1992) on tape to the EMBL Data Library by: RL Luc Simon, Sciences Forestieres, Universite Laval, Centre de RL recherche en biologie forestiere, 4145 Abitibi-Price, Sainte-Foy, RL Quebec, G1K 7P4, Canada XX CC *source: strain=WV 860; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH XX SQ Sequence 1701 BP; 457 A; 324 C; 438 G; 478 T; 4 other; BASE COUNT 457 a 324 c 438 g 478 t 4206 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nn auaaucguua ---------- -ua-caggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u aaau---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAUC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAAC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUGGG- -GCUc(---- ---uuac)gG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg gucug-uc-c auugg--u-c g-ggcu(-uc ac)ggucc-- ---------- 1801 ---------- --g--cacug g-ugu----g auggguuc-c u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------u ucug---aau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cagca-u gcca(-uuca 2161 gu----)ug- ---------- ---------- -gugcguug- ggga------ ---------- 2221 ---a------ ---gcagagc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UAU UACCUUG-AA AA--AAUUAG 2461 AGUGCUUAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---AGUGCUU -GAAUA-GAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA--cggc 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(--auu uuuuaa---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g cg-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuua g--gcacucc ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gga gggucguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --guuua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uucuccu-uc acc(ggaa-) ggugu----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c uc-ucgga-u ugg-gunu-u nagaaccg-- ---------- ---------- 5701 -------(nc aa----)--- ---------- ---------- --------cg gauc-cuuu- 5761 cuu----cun -agaa-|guu -ugucaaacu ug-guc-a-u uuag-AGGAA nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS E.columbia 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14006 ID ECRDNASS standard; DNA; FUN; 1687 BP. XX AC Z14006; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE E.columbiana rDNA for small subunit rRNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Entrophospora columbiana OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1687 RA Simon L., Bousquet J., Levesque R.C., Lalonde M.; RT "Molecular phylogeny of the Glomaceae."; RL Unpublished. XX RN [2] RP 1-1687 RA Simon L.; RT ; RL Submitted (01-JUL-1992) on tape to the EMBL Data Library by: RL Luc Simon, Sciences Forestieres, Universite Laval, Centre de RL recherche en biologie forestiere, 4145 Abitibi-Price, Sainte-Foy, RL Quebec, G1K 7P4, Canada XX CC *source: strain=WV 877; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH XX DE E.columbiana rDNA for small subunit rRNA SQ Sequence 1687 BP; 455 A; 318 C; 423 G; 466 T; 25 other; BASE COUNT 455 a 318 c 423 g 466 t 4241 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nn nnnnnn--nn ---------- -nn-nnnnnn nn-]------ 181 -----|---n nn|n-nnAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u aaaa--uuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUGGG- -GCCu(---- ---uuac)gG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg gucug-uc-c aucgg--u-c g-ggcu(uuu uc)ggucc-- ---------- 1801 ---------- --g--cacug u-ugc----g auggauuc-c u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cuga----au 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cgauu-u gcca(-uuaa 2161 uu----)ug- ---------- ---------- -gugggucg- ggga------ ---------- 2221 ---a------ ---gcaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UGU UACCUUG-AA AA--AAUUAG 2461 AGUGCUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---AGUGCCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA ---------- 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCANUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(--auu uuuuaa---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g cg-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCN|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuua g--uuccucc ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gga gguucguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --guuua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 accuccu-uc acc(ggaa-) ggugu----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c uc-ucgga-u cgg-guuu-g aggagcu--- ---------- ---------- 5701 -------(gu aaaa--)--- ---------- ---------- ---------g gcuc-cuua- 5761 uuu----cug -agaa-|guu ugucaaacuu cg-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Entro.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14011 ID ESRDNASS standard; DNA; FUN; 1724 BP. XX AC Z14011; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE Entrophospora sp. rDNA for small subunit rRNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Entrophospora sp. OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1724 RA Simon L., Bousquet J., Levesque R.C., Lalonde M.; RT "Molecular phylogeny of the Glomaceae."; RL Unpublished. XX RN [2] RP 1-1724 RA Simon L.; RT ; RL Submitted (01-JUL-1992) on tape to the EMBL Data Library by: RL Luc Simon, Sciences Forestieres, Universite Laval, Centre de RL recherche en biologie forestiere, 4145 Abitibi-Price, Sainte-Foy, RL Quebec, G1K 7P4, Canada XX CC *source: strain=WV 796; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH XX SQ Sequence 1724 BP; 470 A; 333 C; 439 G; 480 T; 2 other; BASE COUNT 470 a 333 c 439 g 480 t 4181 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnCU--A GU|------- |-------(- ---)[----- 121 ---------- --------au aaucgu--ua ---------- -ua-caggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u aaaau--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUGGG- -GCCu(---- ---uuac)gG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg gucug-uc-c aucgg--u-c g-ggcu(uuu uc)ggucc-- ---------- 1801 ---------- --g--cacug u-ugc----g auggauuc-c u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cuga----au 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cgauu-u gcca(-uuaa 2161 uu----)ug- ---------- ---------- -gugggucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UGU UACCUUG-AA AA--AAUUAG 2461 AGUGCUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---AGUGCUU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA--cggc 2581 augg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUNCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gnc-g-a-ug uua-(-auuu uuuaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g cg-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GU-UC( --GCAA-)GC 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuua g--uuccucc ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gga gguucguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --guuua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 accuccu-uc acc(ggaa-) ggugu----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c uc-ucgga-u cgg-guuu-g aggagcu--- ---------- ---------- 5701 -------(gu aaaa--)--- ---------- ---------- ---------g gcuc-cuua- 5761 uuu----cug -agaa-|guu -ugucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS G.albida 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14009 ID GARDNASS standard; DNA; FUN; 1702 BP. XX AC Z14009; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE G.albida rDNA for small subunit rRNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Gigaspora albida OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1702 RA Simon L., Bousquet J., Levesque R.C., Lalonde M.; RT "Molecular phylogeny of the Glomaceae."; RL Unpublished. XX RN [2] RP 1-1702 RA Simon L.; RT ; RL Submitted (01-JUL-1992) on tape to the EMBL Data Library by: RL Luc Simon, Sciences Forestieres, Universite Laval, Centre de RL recherche en biologie forestiere, 4145 Abitibi-Price, Sainte-Foy, RL Quebec, G1K 7P4, Canada XX CC *source: strain=WV 1034; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH XX SQ Sequence 1702 BP; 467 A; 316 C; 432 G; 482 T; 5 other; DE G.albida rDNA for small subunit rRNA BASE COUNT 467 a 316 c 432 g 482 t 4206 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnCU--A GU|------- |-------(- ---)[----- 121 ---------- --------au aaucgu--ua ---------- -ua-caggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acaau--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUc(---- ---uuau)gG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg guucu-nc-c guugg--u-c g-g----gca aunn--cu-- ---------- 1801 ---------- --g--nacug g-cgu----g uggaauuu-c u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cguca-u guua(-uuaa 2161 uu----)ua- ---------- ---------- -gcguggug- ggaa------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------CUU UACCUUG-AA AA--AAUUAG 2461 AGUGUCCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UACGUCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA----cg 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-CU---- ------GAA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(--auu uuucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g cg-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca g--gcuauuc ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gaa uggucgac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --guuua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGAGAU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auuuccu-uu acc(ggaa-) gguau----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CAU-GAG (-UCAUCAG- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c cc-ucgga-u cga-uaag-u uggaaaccu- ---------- ---------- 5701 -------(uc ac----)--- ---------- ---------- -------ggg uauc-cnac- 5761 uug----uug -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS G.gigantea 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14010 ID GGRDNASS standard; DNA; FUN; 1680 BP. XX AC Z14010; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE G.gigantea rDNA for small subunit rRNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Gigaspora gigantea OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1680 RA Simon L., Bousquet J., Levesque R.C., Lalonde M.; RT "Molecular phylogeny of the Glomaceae."; RL Unpublished. XX RN [2] RP 1-1680 RA Simon L.; RT ; RL Submitted (01-JUL-1992) on tape to the EMBL Data Library by: RL Luc Simon, Sciences Forestieres, Universite Laval, Centre de RL recherche en biologie forestiere, 4145 Abitibi-Price, Sainte-Foy, RL Quebec, G1K 7P4, Canada XX CC *source: strain=WV 932; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH XX SQ Sequence 1680 BP; 461 A; 313 C; 427 G; 478 T; 1 other; BASE COUNT 461 a 313 c 427 g 478 t 4224 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn--n nn|------- |-------(- ---)[----- 121 ---------- --------nn nnnnnn--nn ---------- -nn-nnnnng aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acaau--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUc(---- ---uuau)gG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg guucu-ac-c guugg--u-c g-ggc-(-aa uu-)gucu-- ---------- 1801 ---------- --g--uacug g-cgu----g uagaauuu-c u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cauca-u guua(-uuaa 2161 uu----)ua- ---------- ---------- -gcguggug- ggaa------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------CUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UACGUCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA----cg 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-CU---- ------GAA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(--auu uuucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g cg-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca g--gcuauuc ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gaa uggucgac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --guuua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auuuccu-uu acc(ggaa-) gguau----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU NAU-C-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CAU-GAG (-UCAUCAG- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c cc-ucgga-u cga-ugaa-g uugaaaccu- ---------- ---------- 5701 -------(uc ac----)--- ---------- ---------- --------gg guau-cuac- 5761 uug----uug -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS G.margarit 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58726 ID GM18SRNA standard; DNA; FUN; 1748 BP. XX AC X58726; XX DT 27-APR-1992 (Rel. 31, Created) DT 27-APR-1992 (Rel. 31, Last updated, Version 2) XX DE G.margarita 18S rRNA gene XX KW 18S ribosomal RNA. XX OS Gigaspora margarita OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1748 RA Simon L.; RT ; RL Submitted (07-MAY-1991) on tape to the EMBL Data Library by: RL L. Simon, Universite Laval, Sciences forestieres, 4145 RL Abitibi-Price, Sainte-Foy, Quebec, CANADA XX RN [2] RA Simon L., Lalonde M., Bruns T.D.; RT "Specific amplification of 18S Fungal ribosomal genes from RT vesicular-arbuscular endomycorrhizal fungi colonizing roots"; RL Appl. Environ. Microbiol. 58:291-295(1992). XX FH Key Location/Qualifiers FH FT rRNA 1..1748 FT /product="18S rRNA" XX SQ Sequence 1748 BP; 478 A; 324 C; 442 G; 504 T; 0 other; BASE COUNT 478 a 324 c 442 g 504 t 4155 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU--A GU|------- |-------(- ---)[----- 121 ---------- --------au aaucgu--ua ---------- -ua-caggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acaau--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUUCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUc(---- ---uuau)gG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg guucu-ac-c guugg--u-c g-ggc-(-aa uu-)gucu-- ---------- 1801 ---------- --g--uacug g-cgu----g uggaauuu-c u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cauca-u guua(-uuaa 2161 uu----)ua- ---------- ---------- -gcguggug- ggaa------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------CUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UACGUCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA----cg 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-CU---- ------GAA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(--auu uuucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g cg-cuu---- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 ACCGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca g--gcuauuc ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gaa uggucgac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --guuua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auuuccu-uu acc(ggaa-) gguau----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CAU-GAG (-UCAUCAG- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c cc-ucgga-u cga-uaag-u ggaaaccu-- ---------- ---------- 5701 -------(uc ac----)--- ---------- ---------- -------ggg uauc-cuuc- 5761 uug----uug -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS S.dipapill 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14013 ID SDRDNASS standard; DNA; FUN; 1696 BP. XX AC Z14013; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE S.dipapillosa rDNA for small subunit rRNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Scuttellospora dipapillosa OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1696 RA Simon L., Bousquet J., Levesque R.C., Lalonde M.; RT "Molecular phylogeny of the Glomaceae."; RL Unpublished. XX RN [2] RP 1-1696 RA Simon L.; RT ; RL Submitted (01-JUL-1992) on tape to the EMBL Data Library by: RL Luc Simon, Sciences Forestieres, Universite Laval, Centre de RL recherche en biologie forestiere, 4145 Abitibi-Price, Sainte-Foy, RL Quebec, G1K 7P4, Canada XX CC *source: strain=WV 929; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH XX SQ Sequence 1696 BP; 458 A; 325 C; 428 G; 476 T; 9 other; BASE COUNT 458 a 325 c 428 g 476 t 4216 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnCU--A GU|------- |-------(- ---)[----- 121 ---------- --------au aaucgu--ua ---------- -ua-caggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acaau--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAU-U UAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUc(---- ---uuuc)gG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| NUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg guucc-ac-c guugg--u-- c-gggc(-ua uu)-guuu-- ---------- 1801 ---------- --gc-acugg c-guu----- uggaauuu-c u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--uauca-u guua(-uuaa 2161 uu----)ua- ---------- ---------- -gcguggua- ggaa------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------CUU UACCUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UAUGUCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA----cg 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-CU---- ------GAA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- N-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUNCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(--acu uuuca----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g cg-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGN NU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGUCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca g--gcuauu- ---------c uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------aa uggucgac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --guuua-)c ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau cgagunc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auuuccc-uu acc(ggaa-) gguau----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGAU-G-GGG AUAGAGCAU( UGCAACUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c cc-ucgga-u cgg-acgc-g uugaaacc-- ---------- ---------- 5701 -------(uu can---)--- ---------- ---------- --------gg uuau-cuuc- 5761 uug----uug -agaa-|guc -ggucaaacu ug-guc-a-n nuag-AGGAA GU-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS S.pellucid 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14012 ID SPRDNASS standard; DNA; FUN; 1698 BP. XX AC Z14012; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE S.pellucida rDNA for small subunit rRNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Scuttellospora pellucida OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1698 RA Simon L., Bousquet J., Levesque R.C., Lalonde M.; RT "Molecular phylogeny of the Glomaceae."; RL Unpublished. XX RN [2] RP 1-1698 RA Simon L.; RT ; RL Submitted (01-JUL-1992) on tape to the EMBL Data Library by: RL Luc Simon, Sciences Forestieres, Universite Laval, Centre de RL recherche en biologie forestiere, 4145 Abitibi-Price, Sainte-Foy, RL Quebec, G1K 7P4, Canada XX CC *source: strain=WV 873; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH XX SQ Sequence 1698 BP; 464 A; 323 C; 431 G; 478 T; 2 other; BASE COUNT 464 a 323 c 431 g 478 t 4207 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnCU--A GU|------- |-------(- ---)[----- 121 ---------- --------au aaucgu--ua ---------- -ua-caggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acaau--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUc(---- ---uuua)gG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAn--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg uuccu-ac-c guugg--u-- c-cggc(-cu ug)cuugg-- ---------- 1801 ---------- --ac-uggcg u-ug------ aaggaauucc u-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cauua-u guua(-uuaa 2161 uu----)ua- ---------- ---------- -gcguagug- ggaa------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------CUU UACCUUG-AA AA--AAUUAG 2461 AGUGUCCAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---UAUGUCU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA-----c 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-CU---- ------GAA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gac-g-a-ug uua-(--acu uuucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-ucg-g cg-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca g--gcuaauc ---------n uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gaa uggucgac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --guuua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auauccu-uu acc(ggaa-) gguau----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGAU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c cc-ucgga-u cga-cucg-u ggaaaccu-- ---------- ---------- 5701 -------(uc ac----)--- ---------- ---------- --------gg guau-ccau- 5761 uug----uug -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS G.etunicat 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14008 ID GERDNASS standard; DNA; FUN; 1727 BP. XX AC Z14008; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE G.etunicatum rDNA for small subunit rRNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Glomus etunicatum OC Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; OC Zygomycetes; Endogonales; Endogonaceae. XX RN [1] RP 1-1727 RA Simon L., Bousquet J., Levesque R.C., Lalonde M.; RT "Molecular phylogeny of the Glomaceae."; RL Unpublished. XX RN [2] RP 1-1727 RA Simon L.; RT ; RL Submitted (01-JUL-1992) on tape to the EMBL Data Library by: RL Luc Simon, Sciences Forestieres, Universite Laval, Centre de RL recherche en biologie forestiere, 4145 Abitibi-Price, Sainte-Foy, RL Quebec, G1K 7P4, Canada XX CC *source: strain=INVAM 147; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH XX SQ Sequence 1727 BP; 490 A; 320 C; 434 G; 483 T; 0 other; OS Glomus etunicatum BASE COUNT 490 a 320 c 434 g 483 t 4176 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnUCU--A GU|------- |-------(- ---)[----- 121 ---------- --------au aaucgu--ua ---------- -ua-caggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -GCUc(---- ---uuuc)gG GU-CU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UUC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUUGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg auuga-c-ac aucgg--u-c g-ugccc-ua agggguau-- ---------- 1801 ---------- --g--aacug g-ugu----a gucaauuucu c-acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----ag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cgcga-u gccc(-uuaa 2161 uu----)gg- ---------- ---------- -gugucacg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------CUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUUAA- AG--CAGGCa u--------- ---------- ---------- ---------- 2521 ---UUUGCUU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAAA-UA -GGA--cggc 2581 auga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCA--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --ggaau-ca gac-g-a-ug uua-(--auu uuuuaa---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gu-uug-g ca-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuua a--accugau --------uu uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------auc agguugac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --guuua-)a ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UAAAG----- ---------- 5281 ---(------ ----)[ucaa caaguaa--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuaaccu-uu gcc(ggaa-) gguau----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U CGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CGU-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-u cu-ucgga-u cgg-cgau-c ggugagua-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ua uucg-cugg- 5761 uug----cug -agaa-|guu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS G.intrarad 5903 bp RNA RNA 11-JAN-191 DEFINITION Glomus intraradices. ACCESSION No information KEYWORDS No information. SOURCE Glomus intraradices. ORGANISM Glomus intraradices. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X58725 Glomus intraradices BASE COUNT 482 a 322 c 438 g 497 t 4164 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nA-GCCAUGC A-UGUCU--A GU|------- |-------(- ---)[----- 121 ---------- --------au aaucgu--ua ---------- -ua-caggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aauu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGG|GUG -U-(UAGG-) 1201 GCA-CGACA- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAU 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCC--G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -guuc(---- ---uuua)gg au-CU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg guuag-uagg uuggu--c-a u-gcc---uc ugguaugu-- ---------- 1801 ---------- --ac-ugguc u-c---acug a--uuc---c u-ccu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc cuua----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cguaa-u gcca(-uuaa 2161 uu----)ug- ---------- ---------- -guguugcg- ggga------ ---------- 2221 ---a------ ---uuuggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UGU UACUUUG-AA AA--AAUUAG 2461 AGUGUUUAA- AG--CAAGCu ---------- ---------- ---------- ---------- 2521 ---AACGCUU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUGAAA-UA -GGA---cgu 2581 ucga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCU|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UUG--ACGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gau-g-a-ug uua-(---au uuuuaa---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-au-ucg-g cg-cuu---- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 ACCGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGcua g--gccuaac ---------a uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------guu aggucgcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --guuua-)a ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucau cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuuuccu-uu auc(ggaa-) gauau----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGCU-G-GGG AUAGAGCAU( UGCAACUA)U UGCUCUUG-A 5521 ACGAGG-AAU C--CCUAGUA AG-UAC-AAG (-UCACUAG- )CUUGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-ucgga-u uga-gauu-c gga-gacu-- ---------- ---------- 5701 -------(gc aac---)--- ---------- ---------- ---------a gacu-cuug- 5761 u--------u -uaaa-|guu -gg-caaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGc(GAA A)CCUNNNNN NNNNNNN--- 5881 --NNN~~~~~ ~~~~~~~~|| ||| // LOCUS G.mossae 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14007 BASE COUNT 476 a 305 c 414 g 481 t 4227 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nn nnnnnn--nn ---------- -nn--nnnnn nn-]------ 181 -----|---n nn|n-nnAA- UGGCU-CAUU AAAu-cagu- uau-aauu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u acaau--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGG|GUG -U-(UAGG-) 1201 GCA-CGACA- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -guuc(---- ---uuuu)gg au-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuucgggg aucaa-uauu ucggu--c-a u-gcc---gu ugguaugc-- ---------- 1801 ---------- --ac-uguua u-c---auug au-ucu---c --acc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cuaa----ag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--cguaa-u gcca(-uuaa 2161 uu----)ug- ---------- ---------- -guguuacg- ggga------ ---------- 2221 ---a------ ---uuaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UGU UACCUUG-AA AA--AAUUAG 2461 AGUGUUUAA- AG--CAGGCu ---------- ---------- ---------- ---------- 2521 ---CACGCUU -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUGAAA-UA -GGA---cau 2581 ccga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- UCG--AUGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gau-g-a-ug uua-(---au uuuuuaa--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-au-ucg-g cg-ccuu--- ---------- ----acGG(- 3661 GAAA-)CCA- -AAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-GU|-GG 4021 ACCGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGcua g--gcuuaac ---------a uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------guu aggucguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --guuua-)a ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auauccu-uu auc(gaaa-) gauau----g gguaau-cuu uugaaa]--- ---------- 5461 -------CUU CAU-C-G--- UGAU-N-NGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU C--CCUAGUA AG-CAC-AAG (-UCAUCAG- )CUUGU-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGGCCCG UGCUAC-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gaga-c cc-ucgga-u ugg-uauu-c uga-agcuu- ---------- ---------- 5701 -------(ua ac----)--- ---------- ---------- --------cg gcau-cugu- 5761 uug----cug -agaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nn~~~~~~ ~~~~~~~~|| ||| // LOCUS R.racemosu 5903 bp RNA RNA 11-JAN-191 DEFINITION Rhizomucor racemosus subsp. was Mucor racemosus. ACCESSION No information KEYWORDS No information. SOURCE Rhizomucor racemosus subsp. was Mucor racemosus. ORGANISM Rhizomucor racemosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X54863 LOCUS MRARRNASS 1831 bp ss-mRNA PLN 17-MAY-1991 DEFINITION M. racemosus 16S-like rRNA gene for small subunit rRNA. ACCESSION X54863 KEYWORDS 16S-like ribosomal RNA; ribosomal RNA. SOURCE Mucor racemosus RNA. ORGANISM Mucor racemosus Eukaryota; Plantae; Thallobionta; Eumycota; Zygomycotina; Zygomycetes; Mucorales; Mucoraceae. REFERENCE 1 (bases 1 to 1831) AUTHORS Sogin,M.L. JOURNAL Unpublished (1990) STANDARD full automatic COMMENT sequence contained in plasmid pMu300. From EMBL 26 entry MRRRNASS; dated 29-NOV-1990. FEATURES Location/Qualifiers rRNA 1..1831 /note="entire coding region for 16S-like rRNA" /product="small subunit ribosomal RNA" BASE COUNT 520 a 340 c 447 g 524 t ORIGIN BASE COUNT 520 a 340 c 447 g 524 t 4072 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaauaaauuu ---------- -au-auugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gauc-- ----uacgug 241 acau<----- ---------- ---------- ---------- ---------a uucu--uuac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aguccacuc -ga|uuuucu gc|--CCU-A UCA--UGGUU GAGAUUGUA- 1141 AG(-AUAGAG G)CUU-ACAA U-|GCCUA-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -GCCU(---- ----uua)AG GU-CU-UGCA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG UCCGUAGUCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-agc cuuua-gaug aggug--gcc u-gguc(uuc auu)gauc-- ---------- 1801 ---------- -aag-cucgc u-u---uuau c--gaggc-u u-uuu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----uu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------au g-cuauga-a uagc(-uuc- 2161 g-----)gu- ---------- ---------- -uguuuauag ucuc------ ---------- 2221 ---ua----- ---gccagau ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GAU UACCAUG-AG CA--AAUCAG 2461 AGUGUUUAA- AG--CAGGCu uu-------- ---------- ---------- ---------- 2521 ---CAAGCUU -GAAUG-UGU -UAGCAUGG- AA-----|UA -AUGAAA-UA -UGA---cuu 2581 uagu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cCC|-UAUU 2821 -UC-GUUGGU -UC-A----- -----GGAA- CUU--AAGUA A--UGAUGAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAA|CGGU ---------- 3001 --UGGGGACA UU|--UGUAU UUGGUCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACCG-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--U UUGAUC-CA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GGUCUAAA 3301 GUUAAGGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AC AAACUAUGCC GAC|UA|--- 3421 --gagau-ug ggc-u---ug uu--(----u auuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u a-gc-uca-g ca--ucu--- ---------- ----uaGC(- 3661 GAAA-)GUa- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GGgac( --gcaa-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugaaagc)-- --ucuuucua gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUCG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AU|- ---------- 4321 ------(--- --)[UCU-GC UAAAUAGgca g--gucaacu uuuuaguu-g auu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -aauagauuu aucuaucu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGA]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --uucaa-)g ccga-A-GGA AGUU-UUAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAA----- ---------- 5281 ---(------ ----)[ucag cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-ua gcc(ggaa-) gguuu----g gguaaa-cuu uugaaa]--- ---------- 5461 -------uuu cau-c-G--- UGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGuuau 5641 agu-gagc-a ua-uggga-u cag-uaga-a uua-gguug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ca accu-uucu- 5761 cug----cag -agaa-|cua -uggcaaacu ag-gcu-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Metazo 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (5)-Eumeta 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (6)-Bilate 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (7)-Acoelo 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS E.granulos 5903 bp RNA RNA 11-JAN-191 DEFINITION Echinococcus granulosus. ACCESSION No information KEYWORDS No information. SOURCE Echinococcus granulosus. ORGANISM Echinococcus granulosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U27015 BASE COUNT 493 a 541 c 764 g 596 t 3509 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |-------(- ---)[----- 121 ---------- --------uc aggcc----u ---------- uaauacggug ag-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----uauugg 241 aucg<----- ---------- ---------- ---------- ---------- ---ugcccgu 301 u>AGAUGG-A UAACUGUAA( -U-AACU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gggucuuc- -aa|augucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-UGACCU G)CCU-ACCA U-|GGUGG-U AAC|GGGGUA A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (CAAG-)GGA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-A( ---gca--)C 1321 GGGG-A-GGU -|G|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CGAUGCGGG- -ACUC(---- -cuucaa)GA GGCUC-CGUA A-UCGGAAU- 1501 ------GAGU ----GGACUC -UAAA--CCC CUU---CA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucucggug gcauu-gucg ccugu--u-g g-uggauuga gcggccggu- ---------- 1801 ---------- -gug-ugguu a-ucg-gugc gcgguugccu c-ggcgc--- -----cugca 1861 uguugguggg ccggucagua guugggcugg uagguuggcg uuuguugcg- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 uuaggguggu ugguugguua guugaccagc ugaugugcuc uuucgucgcg cgcgc-gcuc 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc u-ugcuggcc gauuggugag 2161 c---uggcu- ---------- ---------- -cgcucguuc gccu------ ---------- 2221 ---gcagcgu ugggggggcu gugcagucgc ggccaugagc aagcacuguc gcgucaagcc 2281 gacgaggugg uggugucgcc uuuaagccau gucuguggug uagucgucgc aggugugggc 2341 ggguguuggg cagugccugc acacucugug gagccugucg gcucguccac augccuuugg 2401 augcccuuga uugggugucu gcgggcggau ggcac-GUUU ACUUUG-AAC A--AAUUUGA 2461 GUCGUCAA-G C--CAGGCCG AU-------- ---------- ---------- ---------- 2521 ---guUGCCU GUAAAG-UU- UUGCAUGGAA -------|UA -AUGGAG-GA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uauu 2821 -uc-guuggu -uu-uc---- ------gg-- -a-uccg-AA G-UAA-UGAU CAAAA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -gaga|cagg ---------- 3001 --CGGGGGCG UU|--UGUAU GGCUGCG-CU -AGAG(GU-G AAA---)UUC A-UGGA-C-C 3061 GCGGC-CAG- A-CAAACU-A AAGC(-GAAG )--GC|A--- UUCGUC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGG-C|CA- U-GAGGGAAA 3301 GUCAGAGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gug-gug-g- -----uagcg acguugccuu ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-ca-cgg-g -c-agucg-- ---------- ----ccGG(- 3661 GAAA-)CCGu uAAGUG-uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cg--aca 4081 cugu-gagga u-gacaga(u g-agagc)-- --ucuuucuu gauu-uggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UU-UGC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAGGAGugc g---uucguc gacugcgccc gcgu-gggug 4381 agc--ugacg a---uc---- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------g 4501 ucuguaccgu gugcaguuug cgcucuuugc cucucuccuc uccucaugca cuuc(uucg) 4561 ugagaggggg ugggugggug ggugaggggg ugag-agugc agguugacgc auacgugguu 4621 gguagucugg cguuggcugc gggugcggcg cgaauguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----caucc- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------ucc- AGAGG]---- --|------- ---------- GACA-AGC-G -G-G(----- 5041 ---agaa-)g ccac-a-cga ga---UAGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGCGCGCU ACAAU--G-A CGGUG----- ---------- 5281 ---(------ ----)[ucaa cgagugg--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gaccuucug gccc(gaga) guu------g ggcaaa-cug gucaau]--- ---------- 5461 -------cac cgu-c-g--- UGAC-A-GGG AUCGGGGCU( UGGAAUUG)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-UGC-AGG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AG-UGGUuu- 5641 agu-aaga-u cc-uugga-u cgg-cguc-a uug-uggcag uugcc----- ---------- 5701 -------(gg aa----)--- ---------- ---------- --ggucauug uccu-gcag- 5761 ucg----cug -agaa-|gac -gaccaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS L.manteri 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L16911 LOCUS LBORNA 1976 bp ss-rRNA RNA 21-MAY-1993 DEFINITION Lobatostoma manteri 18S ribosomal RNA sequence. ACCESSION L16911 KEYWORDS 18S ribosomal RNA. SOURCE Lobatostoma manteri hermaphrodite adult rRNA. ORGANISM Lobatostoma manteri Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Aspidogastrea; Aspidogastridae. REFERENCE 1 (bases 1 to 1976) AUTHORS Blair,D. and Barker,S.C. TITLE Affinities of the Gyliauchenidae: utility of the 18S rRNA gene for phylogenetic inference in the Digenea (Platyhelminthes) JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="sequence of forward PCR primer used to amplify 18S rRNA gene; putative" rRNA 1..1976 /product="18S ribosomal RNA" primer_bind complement(1953..1976) /note="reverse complement of PCR primer used to amplify 18S rRNA gene; putative" source 1..1976 /organism="Lobatostoma manteri" /dev_stage="adult" /sequenced_mol="rRNA" /sex="hermaphrodite" BASE COUNT 473 a 442 c 551 g 510 t ORIGIN BASE COUNT 473 a 442 c 551 g 510 t 3927 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacc----u ---------- uuauacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAC-caga- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uaccugc 301 u>ACAUGG-A UAUCUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--ccu-a uca--acuua a-gauGGUA- 1141 GG(-UGAUCU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gua--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CGAUGCGGG- -ACUC(---- ---gucu)GA GGCUC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucucggca guaug-gcug cauau--c-g c-ucuuugca -uuggucu-- ---------- 1801 ---------- -gug-cguca g-u---aaca uu---gugag a-gucga--- -----uuac- 1861 -gugguugua cagccuuuca gccguuucug uuc-auacgg gugcuggcg- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 uggucagucg gcuugucuug cuggccuguu ggcaugcuuc ug-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --gaugcucu 2161 u----cacc- ---------- ---------- -gagugucca gagc------ ---------- 2221 ---ggacggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCCU AU-------- ---------- ---------- ---------- 2521 ---guGCCU- GAAAAG-UC- UUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------ug-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -gaga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- G-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gcg-gug-g- -------uac guuuauuuag ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-cg-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCcu uAAGUC-uuu gGGC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 CAUG-GCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-GG|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGuau g---ccuguc cucuguacac gugc-aggua 4381 gcg--g-auc u---c----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- --uguugccu ucaaguaggg 4621 uaguggaguc ugcugccggc gugcgcggug cagguauu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -G-A(----- 5041 ---uccca)g ucgc-a-CGA AA---UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGCGCGCU ACAAU--G-A CGGUG----- ---------- 5281 ---(------ ----)[ucaa cgagcuuga- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -ccuccu-gg ccc(gaaa-) ggguu----g gguaaa-cug auucau]--- ---------- 5461 -------cac cgu-c-g--- UGAC-A-GGA AUCGGGGCU( UGCAAUUG)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agc-aagg-u cc-ucgga-u ugg-cgcc-u uag-ugguga ---------- ---------- 5701 -------(cu ug----)--- ---------- ---------- -------uca cucg-ucug- 5761 gug----ucg -agaa-|gac -gaccaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAG- ---------- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS E.caproni 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L06567 LOCUS EHIRRNA 1977 bp ss-rRNA RNA 01-APR-1993 DEFINITION Echinostoma caproni 18S ribosomal RNA sequence. ACCESSION L06567 KEYWORDS 18S ribosomal RNA. SOURCE Echinostoma caproni hermaphrodite rRNA. ORGANISM Echinostoma caproni Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Digenea; Echinostomida; Echinostomidae. REFERENCE 1 (bases 1 to 1977) AUTHORS Blair,D. and Barker,S.C. TITLE Affinities of the Gyliauchenidae: utility of the 18S rRNA gene for phylogenetic inference in the Digenea (Platyhelminthes) JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="sequence of forward PCR primer used to amplify 18S rRNA gene; putative" rRNA 1..1977 /product="18S ribosomal RNA" primer_bind complement(1954..1977) /note="reverse complement of PCR primer used to amplify 18S rRNA gene.; putative" BASE COUNT 460 a 441 c 559 g 517 t ORIGIN BASE COUNT 460 a 441 c 559 g 517 t 3926 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacc----u ---------- ucaaacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuugg 241 aucg<----- ---------- ---------- ---------- ---------- ---uacauug 301 u>ACAUGG-A UAACUGUAC( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--ccu-a uca--auuua c-gauGGUA- 1141 GG(-UGACCU G)CCU-ACCA U-|GGUUC-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -AAUCCC-G( ---gca--)C 1321 GGG--A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAUACGGG- -ACUC(---- ---aaua)GA GGCUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAG 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuggguc gcaug-gcua caugc--c-g u-cgcucguu ggugugau-- ---------- 1801 ---------- -cug-guuac g-a---ccgg aucaagccug c-gaguc--- -----ggucu 1861 agugguugug cuuccuuucu gcugugucug uuu---acag gugucagcg- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ugacuggugg gcuugccugc uggucuguug gcaugcuucu ug-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---gugccuu 2161 u----aaac- ---------- ---------- -gggugucgg aggc------ ---------- 2221 ---ggacagc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCCU UU-------- ---------- ---------- ---------- 2521 ---guGCCU- GAAAAU-UC- UUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CU- U-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gug-gcg-g- ------uucu uuaugugu-- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-ca-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCcu uAAGUC-uuu gGGC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-GG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuau g---ccuguc cucugugcuc gugc-agguu 4381 acg--u-ugu c---c----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---auugccu ccucgugggg 4621 uagugguugc guugaccggc gggugcggcg cagguacu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -A-C(----- 5041 ---ucca-)g ucgc-a-CGA AA---UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGUGCGCU ACAAU--G-A CGGUU----- ---------- 5281 ---(------ ----)[ucag cgaguuugg- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aauccu-gg ccu(gagc-) agguu----g gguaaa-cug aaucau]--- ---------- 5461 -------aac cgu-c-g--- UGAC-U-GGG AUCGGGGCU( UGCAAUUG)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agc-aagg-u cc-ucgga-u ugg-ugcc-a uug-uagugg c--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------gccg cucg-accg- 5761 gcg----cug -agaa-|gac -gaccaaacu ug-uuc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAG- ---------- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS F.buski 5903 bp RNA RNA 11-JAN-191 DEFINITION Fasciolopsis buski. ACCESSION No information KEYWORDS No information. SOURCE Fasciolopsis buski. ORGANISM Fasciolopsis buski. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L06668 LOCUS FSLRRNA 1978 bp ss-rRNA RNA 01-APR-1993 DEFINITION Fasciolopsis buski 18S ribosomal RNA sequence. ACCESSION L06668 KEYWORDS 18S ribosomal RNA. SOURCE Fasciolopsis buski hermaphrodite adult rRNA. ORGANISM Fasciolopsis buski Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Digenea; Echinostomida; Echinostomata; Fascioloidea; Fasciolidae. REFERENCE 1 (bases 1 to 1978) AUTHORS Blair,D. and Barker,S.C. TITLE Affinities of the Gyliauchenidae: utility of the 18S rRNA gene for phylogenetic inference in the Digenea (Platyhelminthes) JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="sequence of forward PCR primer used to amplify 18S rRNA gene; putative" rRNA 1..1978 /product="18S ribosomal RNA" primer_bind complement(1955..1978) /note="reverse complement of reverse PCR primer used to amplify 18S rRNA gene.; putative" source 1..1978 /organism="Fasciolopsis buski" /dev_stage="adult" /sex="hermaphrodite" /sequenced_mol="rRNA" BASE COUNT 455 a 441 c 561 g 521 t ORIGIN BASE COUNT 455 a 441 c 561 g 521 t 3925 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac aaacc----u ---------- uuaaacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uacauac 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--ccu-a uca--auuuu c-gauGGUA- 1141 GG(-UGACCU G)CCU-ACCA U-|GGUGC-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -AAUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAUACGGG- -ACUC(---- ---acua)GA GGCUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAUUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAG 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuggguu gcaug-gcua cacgc--c-g u-cgcucguu ggucuggc-- ---------- 1801 ---------- -cug-guuuc c-a---ccgg guugagcuug c-gaguc--- -----gguuu 1861 cgugguugug cuuccuuucu gcugugucug uuu-acaggu gucagcgug- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 accggu---g ggcuugccug cuggucuguu ggcaugcuuc uu-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --ggugccuu 2161 u----aaac- ---------- ---------- -gggugucgg aggc------ ---------- 2221 ---ggacagc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCCU UU-------- ---------- ---------- ---------- 2521 ---guGCCU- GAAAAU-UC- UUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CU- U-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gug-gcg-g- -------uuc uuuaugugu- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-ca-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCcu uAAGUC-uuu gGGC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGA--AAA C-UCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAAUGAG ACUUU-GG|- ---------- 4321 ------(--- --)[CCU-GC UAAauaguau g---ccuguc cucugugcuc gugc-agguu 4381 ucg--uuguc c---a----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ----uugccu ccucgugggg 4621 uagugguuac guugaccggc gaaugcggcg cagguaau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -G-C(----- 5041 ---cuuca)g ucgc-a-CGA AA---AUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGUGCGCU ACAAU--G-A CGGUU----- ---------- 5281 ---(------ ----)[ucag cgaguuugg- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aauccu-gg ccu(gagc-) agguc----g gguaaa-cug uaucau]--- ---------- 5461 -------aac cgu-c-g--- UGAC-U-GGG AUCGGGGCU( UGCAAUUG)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agc-gagg-u cc-ucgga-u ugg-ugcc-a uug-uagugg c--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------gccg cucg-accg- 5761 gug----cug -agaa-|gac -gaccaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAG- ---------- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS H.mollis 5903 bp RNA RNA 11-JAN-191 DEFINITION Heronimus mollis. ACCESSION No information KEYWORDS No information. SOURCE Heronimus mollis. ORGANISM Heronimus mollis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L14486 LOCUS HNMRR18S 1918 bp ss-rRNA RNA 01-JUL-1993 DEFINITION Heronimus mollis 18S ribosomal RNA (18S rRNA). ACCESSION L14486 KEYWORDS 18S ribosomal RNA. SOURCE Heronimus mollis rRNA. ORGANISM Heronimus mollis Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Digenea; Echinostomida; Paramphistomata; Pramphistomatoidea; Heronimidae. REFERENCE 1 (bases 1 to 1918) AUTHORS Barker,S.C., Blair,D., Cribb,T.H. and Tonion,K. TITLE Phylogenetic position of Heronimus mollis (Digenea): evidence from 18S ribosomal DNA JOURNAL Int. J. Parasitol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1918 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1918 /organism="Heronimus mollis" /sequenced_mol="rRNA" BASE COUNT 463 a 431 c 536 g 487 t 1 others ORIGIN BASE COUNT 463 a 431 c 536 g 487 t 3986 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCC-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac aaacc----u ---------- uaaaacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uacaugc 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACUAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--ccu-a uca--auugu c-gauGGUA- 1141 GG(-UGACCU G)CCU-AACA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAUACGGG- -ACUC(---- ---uuua)GA GGCUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGACC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAG 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuggguc gcaug-gcua ccugc--c-g u-cgcccaua auccaaac-- ---------- 1801 ---------- -cuc-agggu u-u---gguu uua--cgggu c-ggugu--- -----agu-- 1861 -a--gucgug cagccuuucu gccgugucug auu-ucacag gugcugguu- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ggguugauga guucuucuca uuggccuacu ggcaugcuuc ca-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --ggugcccu 2161 u----aaac- ---------- ---------- -gggugucgg gagc------ ---------- 2221 ---ggacggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCCU CU-------- ---------- ---------- ---------- 2521 ---guGCCU- GAAAAU-UC- UUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CU- G-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gug-gcg-g- -------uuc uauuauuga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-cg-cgg-g -c-agucu-- ---------- ----ccGG(- 3661 GAAA-)CCcu uAAGUC-uuu gGGC|-G|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 A-CCUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cngug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-GG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuac g---ccuguc cucugugcuc gugc-agguc 4381 aug--guguu c---a----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- -----uugcc ucucacgggg 4621 uggugau-ac cuuugccagc gagugcggcg caggugcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -G-C(----- 5041 --gugcca)g ucgc-a-CGA AA---UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGUGCGCU ACAAU--G-A CGGUU----- ---------- 5281 ---(------ ----)[acag cgaguuugg- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aauccu-gg ccc(gaaa-) ggguu----g ggcaaa-cug aaccau]--- ---------- 5461 -------cac cgu-c-g--- UGAC-U-GGG AUCGGGGCU( UGCAAUUG)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAA- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug au-ugguuu- 5641 agc-aagg-u cc-ucaga-u ugg-ugcc-a uug-uag--- ---------- ---------- 5701 -------(cg g-----)--- ---------- ---------- ---------- cuuc---cg- 5761 gua----cug -agaa-|gac -gaccgaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C C-----(--- -)-------- ---------- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS C.calicoph 5903 bp RNA RNA 11-JAN-191 DEFINITION Calicophoron calicophorum. ACCESSION No information KEYWORDS No information. SOURCE Calicophoron calicophorum. ORGANISM Calicophoron calicophorum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L06566 LOCUS CLWRNA 1982 bp ss-rRNA RNA 01-APR-1993 DEFINITION Calicophoron calicophorum 18S ribosomal RNA sequence. ACCESSION L06566 KEYWORDS 18S ribosomal RNA. SOURCE Calicophoron calicophorum hermaphrodite rRNA. ORGANISM Calicophoron calicophorum Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Digenea; Echinostomida; Paramphistomata; Paramphistomatoidea; Paramphistomidae. REFERENCE 1 (bases 1 to 1982) AUTHORS Blair,D. and Barker,S.C. TITLE Affinities of the Gyliauchenidae: utility of the 18S rRNA gene for phylogenetic inference in the Digenea (Platyhelminthes) JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="sequence of forward PCR primer used to amplify 18S rRNA gene; putative" rRNA 1..1982 /product="18S ribosomal RNA" primer_bind complement(1959..1982) /note="reverse complement of PCR primer used to amplify 18S rRNA gene; putative" source 1..1982 /organism="Calicophoron calicophorum" /sex="hermaphrodite" /sequenced_mol="rRNA" BASE COUNT 467 a 432 c 562 g 512 t 9 others ORIGIN BASE COUNT 467 a 432 c 562 g 512 t 3930 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacc----u ---------- uaaaacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuugg 241 aucg<----- ---------- ---------- ---------- ---------- ---uacauac 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--ccu-a uca--auugu c-gauGGUA- 1141 GG(-UGACCU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -AAUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAUACGGG- -ACUC(---- ---aaaa)GA GGCUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGACC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAG 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuggguc gcaug-gcua cnngc--c-g u-ugcuugug aucucggu-- ---------- 1801 ---------- -uug-guuac g-a---ccgg auugaguuca u-gaguc--- -----ggugu 1861 agugguugug cagccuuucu gccgugucug uuu-uacagg ugcuggugg- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 auuguu---g gguucgcccu ucagucuguc ggcaugcuuc cg-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --aaugccuu 2161 u----aaac- ---------- ---------- -ggguguugg gggc------ ---------- 2221 ---ggacggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCCC UU-------- ---------- ---------- ---------- 2521 ---guGCCU- GAAAAG-UC- UUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CU- G-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gug-gcg-g- -------uuc uuuucuuga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-cg-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCcu uAAGUC-uuu gGGC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 NNAUGGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CCU-GC UAAauaguau g---ccuguu cacuguguuc gugc-agguc 4381 gcg--gcguu c---g----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---augccuc cucguggggu 4621 auuggugucg uuuguccggc ggauacggcg cagguguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -G-C(----- 5041 --uuguaa)u ccgc-a-CGA AA---UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGUGCGCU ACAAU--G-A CGGUU----- ---------- 5281 ---(------ ----)[ucag cgaguuugg- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aaaccu-gg ccc(gaaa-) ggguu----g ggcaaa-cug aaccau]--- ---------- 5461 -------aac cgu-c-g--- UGAC-A-GGG AUCGGGGCU( UGCAAUUG)U UCUCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-uggugu- 5641 agc-aagg-u cccucgga-u cgg-ugcc-a uuu-uagugg u--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------gccg cuua-aacg- 5761 gcg----cug -agaa-|gac -gaccaaacu uc-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAG- ---------- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS Gylia.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Gyliauchen sp.. ACCESSION No information KEYWORDS No information. SOURCE Gyliauchen sp. ORGANISM Gyliauchen sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L06669 LOCUS GLHRRNA 1964 bp ss-rRNA RNA 01-APR-1993 DEFINITION Gyliauchen sp. 18S ribosomal RNA sequence. ACCESSION L06669 KEYWORDS 18S ribosomal RNA. SOURCE Gyliauchen sp. hermaphrodite rRNA. ORGANISM Gyliauchen sp. Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Digenea; Opisthorchiida; Acanthocolpiata; Acanthocolpioidea; Gyliauchenidae. REFERENCE 1 (bases 1 to 1964) AUTHORS Blair,D. and Barker,S.C. TITLE Affinities of the Gyliauchenidae: utility of the 18S rRNA gene for phylogenetic inference in the Digenea (Platyhelminthes) JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="sequence of forward PCR primer used to amplify 18S rRNA gene.; putative" rRNA 1..1964 /product="18S ribosomal RNA" primer_bind complement(1947..1964) /note="reverse complement of PCR primer used to amplify 18S rRNA gene; putative" source 1..1964 /organism="Gyliauchen sp." /sex="hermaphrodite" /sequenced_mol="rRNA" BASE COUNT 463 a 428 c 550 g 523 t ORIGIN BASE COUNT 463 a 428 c 550 g 523 t 3939 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacc----u ---------- uaaaacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uacauac 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--ccu-a uca--auuuu c-gauGGUA- 1141 GG(-UGACCU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -AAUCCC-G( ---gaa--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAUACGGG- -UCUU(---- ---auuu)GA GGCUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -CAAA--UCC UUU---AA-C GA-GGAUC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAG 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuggguc guacg-acua caugc--c-g u-uucucuuu -uucgguc-- ---------- 1801 ---------- -cgg-uuucg a-u---cggu cg----gauu u-gaguc--- -----ggug- 1861 -ucgguugug cagccuuucu gccgugucug uuu--uacag guguugguu- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 guaucgguga gcuugucuug cuggucgauc gacaugccuc ug-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uaugccuu 2161 u----uacc- ---------- ---------- -gggugucgg gggc------ ---------- 2221 ---ggacggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCCU AU-------- ---------- ---------- ---------- 2521 ---guGCCU- GAAAAU-UC- UUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CU- G-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gug-gug-g- -------uuc uauuauugu- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-ca-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCuu uAAGUC-uuu gGGC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-GA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuau g---ccuguc cucugugcuc gcau-aggua 4381 gcg--g-ugc u---c----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ------acug ccuucugggg 4621 ugguggugcu auuugccagc gggugcggcg cagguauu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -G-C(----- 5041 --gugaca)g ucgc-a-CGA AA---UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGUGCGCU ACAAU--G-A CGGUU----- ---------- 5281 ---(------ ----)[ucag cgaguuugg- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gauccu-ag ccc(gaaa-) ggguu----g gguaaa-cug aaccau]--- ---------- 5461 -------cac cgu-c-g--- UGAC-U-GGG AUCGGGGCU( UGCAAUUG)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agc-aagg-u cc-ucgga-u ugg-ugcc-a uug-uaguug c--------- ---------- 5701 -------(au cc----)--- ---------- ---------- ------gcga cucg-aacg- 5761 gug----cug -agaa-|gac -gaccaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)C------- ---------- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS O.viverrin 5903 bp RNA RNA 11-JAN-191 DEFINITION Opisthorchis viverrini. ACCESSION No information KEYWORDS No information. SOURCE Opisthorchis viverrini. ORGANISM Opisthorchis viverrini. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X55357 ID OVSSRRNA standard; DNA; INV; 1992 BP. XX AC X55357; XX DT 15-JUL-1991 (Rel. 28, Last updated, Version 9) DT 03-JUL-1991 (Rel. 28, Created) XX DE O. viverrini gene for small subunit rRNA. XX KW 18S ribosomal RNA; small subunit rRNA. XX OS Opisthorchis viverrini OC Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; OC Digenea; Opisthorchiida; Opisthorchiata; Opisthorchioidea; OC Opisthorchiidae. XX RN [1] RA Sirisinha S.; RT ; RL Submitted (06-NOV-1990) on tape to the EMBL Data Library by: RL Sirisinha S., Mahidol University, Faculty of Science, Rama VI Road, RL Bangkok 10400, Thailand. XX RN [2] RA Korbsrisate S., Mongkolsuk S., Haynes J.R., England D., RA Sirisinha S.; RT "The complete nucleotide sequence of Opisthorchis viverrini small RT subunit rRNA gene"; RL Unpublished. XX RN [3] RC Updates [1] RP 1-1992 RA Sirisinha S.; RT ; RL Submitted (10-JUN-1991) on tape to the EMBL Data Library by: RL S. Sirisinha, MAHIDOL UNIVERSITY, FACULTY OF SCIENCE, RAMA VI RD, RL BANGKOK 10400, THAILAND XX CC *source: stage=adult; CC *source: clone_library=SUNEE I genomic; CC *source: clone=POV-I; XX FH Key Location/Qualifiers FH FT rRNA 1..1992 FT /product="small subunit rRNA" XX SQ Sequence 1992 BP; 463 A; 446 C; 571 G; 512 T; 0 other; BASE COUNT 463 a 446 c 571 g 512 t 3911 others ORIGIN 1 |--------- -----AAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac aaaccu--uc ---------- -aa-acggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuugg 241 aucg<----- ---------- ---------- ---------- ---------- ---uacauac 301 u>ACAUGG-A UAACUGUAU( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- --ggucuuuc -aa|augucu gc|--CCU-A UCA--AUUUU C-GAUGGUA- 1141 GG(-UGACCU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAUACGGG- -ACUC(---- ---auua)GA GGCUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAG 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucug---- --ggu-cgca uggcu--a-c a-ug----cc guugcuc--- ---------- 1801 ---------- ---g-uauuc c-u---ggcc ugguucacac c-gggac--- ---------- 1861 ggguuuguga gucgg----- --ugucgugg uugugcagcc uuucugccg- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ugucuguuuc gacagguguu agcaugauug guggguucgu cccugccuga ucugu-ugac 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------au g-cuucccag gugcc-uuaa 2161 c----c-gg- ---------- ---------- -gucgu-cgg -ggg------ ---------- 2221 ---cggacgg cac------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCCC ---------- ---------- ---------- ---------- 2521 --GUGUGCCU GAAAAU-UC- uuGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 uUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -uu-uc---- ------gG-- -A-UC-CGAA G-UAA-UGGU UAAAA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 ACCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CU- G-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gug-gug-g- cgcg(----- auuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----uggc-c c-cg-cgg-g -c-agccc-- ---------- ----ccGG(- 3661 GAAA-)CCuu uaAGUc-uuu gGGC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 CAGU-GCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA UCUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUu-gg|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGU-a c--gccuguc c-ucugugcu cgug-caggu 4381 gg---cggug c---ucauug ccuc(ucu)- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ------gggg 4621 ugauggugcc guucgccggc gggugc-ggc cagguguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agc-g -g-c(----- 5041 --gugcca)g ucgc---acg aAAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGUGCGCU ACAAU--G-A CGGUU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------g 5401 ggauccu-ag ccc(gaaa-) gguuug---- gguaaacuga -accau]--- ---------- 5461 -------AAC CGU-C-G--- UGAC-U-GGG AUCGGGGCU( UGCAAUUG)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--uG AA-UGGuuu- 5641 agc-aagg-u cc-ucgga-u ugg-ugcc-a uug-uaguug c--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------gcag cucg-accg- 5761 gug----cug -aaaa-|gac -gaccaaacu ug-auc-a-u uuaG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS T.blepta 5903 bp RNA RNA 11-JAN-191 DEFINITION Tetracerasta blepta. ACCESSION No information KEYWORDS No information. SOURCE Tetracerasta blepta. ORGANISM Tetracerasta blepta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L06670 LOCUS TSTRRNA 1973 bp ss-rRNA RNA 01-APR- 1993 DEFINITION Tetracerasta blepta 18S ribosomal RNA sequence. ACCESSION L06670 KEYWORDS 18S ribosomal RNA. SOURCE Tetracerasta blepta hermaphrodite rRNA. ORGANISM Tetracerasta blepta Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Plagiorchiida; Allocreadiata; Lepocreadioidea; Lepocreadioidea; Lepocreadiidae. REFERENCE 1 (bases 1 to 1973) AUTHORS Blair,D. and Barker,S.C. TITLE Affinities of the Gyliauchenidae: utility of the 18S rRNA gene for phylogenetic inference in the Digenea (Platyhelminthes) JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="sequence of forward PCR primer used to amplify 18S rRNA gene.; putative" rRNA 1..1973 /product="18S ribosomal RNA" primer_bind complement(1950..1973) /note="reverse complement of PCR primer used to amplify 18S rRNAgene.; putative" source 1..1973 /organism="Tetracerasta blepta" /sex="hermaphrodite" /sequenced_mol="rRNA" /germline BASE COUNT 462 a 427 c 558 g 526 t ORIGIN BASE COUNT 462 a 427 c 558 g 526 t 3930 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacc----u ---------- ucaaacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uacauac 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--ccu-a uca--auuuu c-gauGGUA- 1141 GG(-UGAUCU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -AAUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAUACGGG- -UCUU(---- ---auuu)GA GGCUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAG 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuggguc gcaug-gcua caugc--c-g u-aucucguu -uccgguc-- ---------- 1801 ---------- -cgg-uuucg a-u---cggu cgg----uuu u-gaguc--- -----ggugu 1861 cgg--uugug cagccuuucu gccgugucug uuu-cgacag guguugacu- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 guaucggugg gcuugucuug cuggucuguu gacaugcuuc ug-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --uaugccuu 2161 u----aaac- ---------- ---------- -gggugucgg gggc------ ---------- 2221 ---ggacggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCGU UU-------- ---------- ---------- ---------- 2521 ---uuGCCU- GAAAAU-UC- UUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CU- G-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gug-gug-g- ------uucu auaauugu-- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-ca-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCuu uAAGUC-uuu gGGC|-U|C- CGGGGAAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-GG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuau g---ccuguc cucugugcuc gugc-aggua 4381 gcg--g-ugc u---c----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---auugccu -uucg--ggg 4621 ugguggugcc guuugccggc gggugcggcg cagguauu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -G-C(----- 5041 --gcgaca)g ucgc-a-CGA AA---AUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGUGCGCU ACAAU--G-A CGGUU----- ---------- 5281 ---(------ ----)[ucag cgaguuugg- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -aauccu-gg ccc(gaaa-) ggguu----g ggcaaa-cug aaccau]--- ---------- 5461 -------cac cgu-c-g--- UGAC-U-GGG AUCGGGGUU( UGCAAUUA)U CCCCCGUG-A 5521 ACGAAG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agc-aagg-c ca-uugga-u ugg-ugcc-a uug-uaguug c--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------gcga cucg-aacg- 5761 gcg----cug -agaa-|gau -gaccaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAG- ---------- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS S.haematob 5903 bp RNA RNA 11-JAN-191 DEFINITION Schistosoma haematobium. ACCESSION No information KEYWORDS No information. SOURCE Schistosoma haematobium. ORGANISM Schistosoma haematobium. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z11976 LOCUS SCM18SRIBR 1972 bp ds-DNA INV 12-SEP-1992 DEFINITION S.haematobium gene encoding 18S ribosomal RNA. ACCESSION Z11976 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Schistosoma haematobium DNA. ORGANISM Schistosoma haematobium Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Strigeata; Schistosomatoidea; Schistosomatidae. REFERENCE 1 (bases 1 to 1972) AUTHORS Johnston,D.A., Kane,R.A. and Rollinson,D. TITLE Small subunit rRNA gene sequence divergence within the genus Schistosoma JOURNAL Unpublished (1992) STANDARD full staff_review REFERENCE 2 (bases 1 to 1972) AUTHORS Johnston,D.A. JOURNAL Unpublished (1992) STANDARD full staff_review COMMENT *source: strain=Mali P1; *source: stage=adult; *source: tissue= whole organism - pooled paired male and female *source: worms; *source: clone_library=haematobium 3, haematobium RK1; *source: clone=pSH20:3, pSHA2/A3/A4/A5/B1/B2/B3/B4; *source: isolate=1730, 1731, 1732; *source: is_macronuclear=N; *source: is_proviral=N; From EMBL entry SH18SRIBR; dated 03-SEP-1992. FEATURES Location/Qualifiers rRNA <1..>1972 /product="18S ribosomal RNA smallsubunit" /gene="18S rRNA" /citation=[1] /citation=[2] misc_feature 1..1791 /note="Sequence from 5' end of 18S rRNA gene tointernal Hind3 site (position 1786 to 1791)obtained from clone pSH20:3 (Hind3 cut genomic DNAshotgun cloned into PUC19)" /citation=[1] /citation=[2] primer_bind 1414..1432 /note="PCR primer (designated 24R) used to amplifyportion of gene 3' of the internal Hind3 site." /citation=[1] /citation=[2] misc_feature 1792..1972 /note="Sequence 3' of internal Hind3 site of 18SrRNA gene (position 1786 to 1791) obtained frompool of 8 clones of PCR-amplified DNA cloned intoPCR1000 (pSHA2/A3/A4/A5/B1/B2/B3/B4)" /citation=[1] /citation=[2] primer_bind complement(1951..1972) /note="PCR primer (designated AW13) used toamplify portion of gene 3' of the internal Hind3site. NB sequence of actual gene may be differentto primer." /citation=[1] /citation=[2] BASE COUNT 473 a 415 c 560 g 524 t ORIGIN BASE COUNT 473 a 415 c 560 g 524 t 3931 others ORIGIN 1 |--------- -----AAACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auaccu--ua ---------- -aa-acggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uaaaugc 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--CCU-A UCA--auuu- --guuGGUA- 1141 GG(-UGAUUU G)CCU-ACCA U-|GAUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAUACGGG- -acuc(---- ---aauu)ga ggcUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGACC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuggguc gugcg-gucg caugc--c-g c-ugcuuguu cacgguuu-- ---------- 1801 ---------- --ug-guuac g-a---ucag gac--guguu c-agcuc--- -----ggugu 1861 aguggcugug cagccuuuca gccgugucug uguuaaacgg gugcuggug- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 gguugacgag uucgucuugu ugaccugucg gcaugcuucc gg-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---augccuu 2161 u----aaac- ---------- ---------- -gggugucgg gagc------ ---------- 2221 ---ggacggc au-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------CUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCcu gu-------- ---------- ---------- ---------- 2521 ---gcGCCU- GAAAAU-UC- UUGCAUGGAA -------|UA -AUGAAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-GGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- G-GAGCGAAA 3301 GUCAGAGUU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACAAUGCC GAC|UG|--- 3421 --augau-cc gcg-u-u-g- ----(-guuc uauaauuga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-a u-cg-cag-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCuu uAAGUC-uuu gGGC|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G UU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuag a---cugguc cucugugcuc guuu-agggc 4381 gcg--g-cuu c---u----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---auugcuu cuuuauggag 4621 uagugugguc gugauccggc gggugcggug ccaguuuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -G-C(----- 5041 acacuuaa)g ucgc-A-CGA AA---UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCAC A-CGUGCGCU ACAAU--G-A CGGUG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------g 5401 ggaaccu-gg ccc(gaaa-) ggguu----g ggcaaa-cug uuucau]--- ---------- 5461 -------cac cgu-c-g--- UGAC-U-GGG AUCGGGGCU( UGCAAUUA)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gagg-u cg-uugga-u ugg-uguc-g uug-uagugg c--------- ---------- 5701 -------(gu u-----)--- ---------- ---------- ------gccg cucg-acug- 5761 aug----cug -agaa-|gau -gaccuaauu ug-acu-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)nnnnnnnn nnnnnnn... 5881 ..nnn~~~~~ ~~~~~~~~|| ||| // LOCUS S.manson.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Schistosoma mansoni. ACCESSION No information KEYWORDS No information. SOURCE Schistosoma mansoni. ORGANISM Schistosoma mansoni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53047 LOCUS SCMSSSRRNA 1992 bp ds-DNA INV 14-AUG-1991 DEFINITION Schistosoma mansoni small subunit rRNA gene ACCESSION X53047 KEYWORDS small subunit ribosomal RNA; structural RNA. SOURCE Schistosoma mansoni DNA. ORGANISM Schistosoma mansoni Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Strigeata; Schistosomatoidea; Schistosomatidae. REFERENCE 1 (bases 1 to 1992) AUTHORS Ali,P.O., Simpson,A.J., Allen,R., Waters,A.P., Humphries,C.J., Johnston,D.A. and Rollinson,D. TITLE Sequence of a small subunit rRNA gene of Schistosoma mansoni and its use in phylogenetic analysis JOURNAL Mol. Biochem. Parasitol. 46, 201-208 (1991) STANDARD full automatic COMMENT *source: strain=NMRI; *source: clone=pSM 389, and pSM 889; From EMBL entry SMSSSRRNA; dated 25-JUL-1991. FEATURES Location/Qualifiers prim_transcript 1..1992 /note="small subunit rRNA" BASE COUNT 480 a 421 c 562 g 529 t ORIGIN BASE COUNT 480 a 421 c 562 g 529 t 3911 others ORIGIN 1 |--------- -----AAACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auaccu--ua ---------- -aa-acggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uaaacgc 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--CCU-A UCA--auuu- --guuGGUA- 1141 GG(-UGAUUU G)CCU-ACCA U-|GAUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GUAUACGGG- -acuc(---- ---aauu)ga ggcUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGACC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaucuggguc gugcg-gucg caugc--c-g u-ugcuuguu cacgguuu-- ---------- 1801 ---------- --ug-guuac g-a---ucag gaccaguguu c-agcuc--- -----ggugu 1861 aguggcugug cagccuuuca gccgugucug uguuaaacgg gugcuggug- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 gguugacgag uucgucuugu ugaccugucg gcaugcuucc gg-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---augccuu 2161 u----aaac- ---------- ---------- -gggugucgg gagc------ ---------- 2221 ---ggacggc au-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------CUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCcu au-------- ---------- ---------- ---------- 2521 ---gugcCU- GAAAAU-UC- UUGCAUGGAA -------|UA -AUGAAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-GGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- G-GAGCGAAA 3301 GUCAGAGUU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gcg-u-u-g- ------guuc uauaauuga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-a u-cg-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCUu UAAGUC-uuu gGGC|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G UU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuag a---cugguc cucugugcuc guuu-agggc 4381 gcg--g-cuu c---u----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---auugcuu cuuuauggag 4621 uagugugguc gugauccggc gggugcggug ccaguuuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GAca-agc-g -g-c(----- 5041 acacuuaa)g ucgc-A-CGA AA---UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG a|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCAC A-CGUGCGCU ACAAU--G-A CGGUG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------g 5401 gaaaccu-gg ccc(gaaa-) ggguu----g ggcaaa-cug uuucau]--- ---------- 5461 -------cac cgu-c-g--- uGAC-U-GGG AUCGGGGCU( UGCAAUUA)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gagg-u cg-uugga-u ugg-cguc-g uug-uagugg c--------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ------gccg cucg-acug- 5761 aug----cug -agaa-|gau -gaccuaauu ug-acu-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.manson.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Schistosoma mansoni. ACCESSION No information KEYWORDS No information. SOURCE Schistosoma mansoni. ORGANISM Schistosoma mansoni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53986 LOCUS SCM16SRSS 1990 bp ds-DNA INV 24-MAY-1992 DEFINITION S.mansoni gene for 16S ribosomal RNA small subunit ACCESSION X53986 KEYWORDS 16S ribosomal RNA small subunit. SOURCE Schistosoma mansoni DNA. ORGANISM Schistosoma mansoni Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Strigeata; Schistosomatoidea; Schistosomatidae. REFERENCE 1 (bases 1 to 1990) AUTHORS Sogin,M.L., Hall,L., Agabian,N., Culpepper,J. and Newport,G. TITLE Primary Structure of the Schistosoma mansoni small subunit rRNA coding region JOURNAL Unpublished (1992) STANDARD full automatic COMMENT From EMBL entry SM16SRSS; dated 29-APR-1992. FEATURES Location/Qualifiers rRNA <1..>1990 /product="16S rRNA small subunit" BASE COUNT 480 a 422 c 561 g 527 t ORIGIN BASE COUNT 480 a 422 c 561 g 527 t 3913 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auaccu--ua ---------- -aa-acggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uaaacgc 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--CCU-A UCA--auuu- --guuGGUA- 1141 GG(-UGAUUU G)CCU-ACCA U-|GAUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GUAUACGGG- -acuc(---- ---aauu)ga ggcUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGACC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaucuggguc gugcg-gucg caugc--c-g u-ugcuuguu cacgguuu-- ---------- 1801 ---------- --ug-guuac g-a---ucag gaccaguguu c-agcuc--- -----ggugu 1861 aguggcugug cagccuuuca gccgugucug uguuaaacgg gugcuggug- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 gguugacgag uucgucuugu ugaccugucg gcaugcuucc gg-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---augccuu 2161 u----aaac- ---------- ---------- -gggugucgg gagc------ ---------- 2221 ---ggacggc au-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------CUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCcu au-------- ---------- ---------- ---------- 2521 ---guGCCU- GAAAAU-UC- UUGCAUGGAA -------|UA -AUGAAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-GGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- G-GAGCGAAA 3301 GUCAGAGUU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gcg-u-u-g- ----(-guuc uauaauuga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-a u-cg-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCuu uAAGUC-uuu gGGC|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G UU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuag a---cugguc cucugugcuc guuu-agggc 4381 gcg--g-cuu c---u----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---auugcuu cuuuauggag 4621 uagugugguc gugauccggc gggugcggug ccaguuuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -G-C(----- 5041 acacuuaa)g ucgc-A-CGA AA---UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCAC A-CGUGCGCU ACAAU--G-A CGGUG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------g 5401 gaaaccu-gg ccc(gaaa-) ggguu----g ggcaaa-cug uuucau]--- ---------- 5461 -------cac cgu-c-g--- UGAC-U-GGG AUCGGGGCU( UGCAAUUA)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gagg-u cg-uugga-u ugg-cguc-g uug-uagugg c--------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ------gccg cucg-acug- 5761 aug----cug -agaa-|gau -gaccuaauu ug-acu-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)Ccugcaga aggauca--- 5881 --a~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.spindale 5903 bp RNA RNA 11-JAN-191 DEFINITION Schistosoma spindale. ACCESSION No information KEYWORDS No information. SOURCE Schistosoma spindale. ORGANISM Schistosoma spindale. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z11979 ID SS18SRIBR standard; DNA; INV; 1990 BP. XX AC Z11979; XX DT 03-SEP-1992 (Rel. 33, Created) DT 14-DEC-1993 (Rel. 38, Last updated, Version 5) XX DE S.spindale gene encoding 18S ribosomal RNA. XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Schistosoma spindale OC Eukaryota; Animalia; Eumetazoa; Platyhelminthes; Trematoda; OC Digenea; Strigeidida; Strigeata; Schistosomatoidea; OC Schistosomatidae. XX RN [2] RP 1-1990 RA Johnston D.A.; RT ; RL Submitted (24-APR-1992) to the EMBL/GenBank/DDBJ databases. RL Johnston D. A., The Natural History Museum, Zoology, Cromwell Road, RL London, England, SW7 5BD XX RN [3] RP 1-1990 RA Johnston D.A., Kane R.A., Rollinson D.; RT "Small subunit (18S) ribosomal RNA gene divergence in the genus RT Schistosoma."; RL Parasitology 107:147-156(1993). XX FH Key Location/Qualifiers FH FT source 1..1990 FT /organism="Schistosoma spindale" FT /strain="Kandy Sri Lanka" FT /dev_stage="Adult" FT /tissue_type="whole organism - pooled paired male and FT female worms" FT /clone_lib="Spindale 2" FT /clone="pSS16:26" FT /isolate="1659" FT rRNA 1..1990 FT /gene="18S rRNA" FT /product="18S ribosomal RNA small subunit" FT /note="Complete sequence obtained from Kpn1-cut genomic DNA FT cloned into PUC18." FT /citation=[1] XX SQ Sequence 1990 BP; 478 A; 419 C; 563 G; 530 T; 0 other; BASE COUNT 478 a 419 c 563 g 530 t 3913 others ORIGIN 1 |--------- -----AAACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacc----u ---------- uaaaacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uaaaugc 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucuuuc -aa|augucu gc|--ccu-a uca--a--uu u-guuGGUA- 1141 GG(-UGAUUU G)CCU-ACCA U-|GAUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAC 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GAAUACGGG- -ACUC(---- ---aauu)GA GGCUC-CGUA A-UUCGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGACC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuggguc gugcg-gucg caugc--c-g u-ugcuuguu cacuguuu-- ---------- 1801 ---------- --ug-guuac g-a---ucag gac--guguu c-agcuc--- -----ggugu 1861 aguggcugug cagccuuuca gccgugucug uguuaaacgg gugcuggug- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 gguugacgag uucgucuugu ugaccugucg gcaugcuucc gg-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---augccuu 2161 u----aaac- ---------- ---------- -gggugucgg gagc------ ---------- 2221 ---ggacggc au-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------CUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCCU GU-------- ---------- ---------- ---------- 2521 ---gcGCCU- GAAAAU-UC- UUGCAUGGAA -------|UA -AUGAAA-UA -GGAcUucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------gg-- -a-uccg-AA G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--UGUAU GGCGGUG-UU -AGAG(GU-G AAA---)UUC U-GGGA-U-C 3061 GCCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- G-GAGCGAAA 3301 GUCAGAGUU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gcg-u-u-g- ----(-guuc uauaauuga) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-a u-cg-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCuu uAAGUC-uuu gGGC|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G UU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuag a---cugguc cucugugcuc guuu-agggc 4381 gcg--g-cuu c---u----- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---auugcuu cuuuauggag 4621 uagugugguc gugauccggc gggugcggug ccaguuuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-cU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGC-G -G-C(----- 5041 acacuuaa)g ucgc-a-CGA AA---UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCAC A-CGUGCGCU ACAAU--G-A CGGUG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------g 5401 gaaaccu-gg ccc(gaaa-) ggguu----g ggcaaa-cug uuucau]--- ---------- 5461 -------cac cgu-c-g--- UGAC-U-GGG AUCGGGGCU( UGCAAUUA)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gagg-u cg-uugga-u ugg-uguc-g uug-uagugg c--------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ------gccg cucg-acug- 5761 aug----cug -agaa-|gau -gaccuaauu ug-acu-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uua~~~~~ ~~~~~~~~|| ||| // LOCUS (7)-Coelom 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (8)-Deuter 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (9)-Chorda 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (10)-Uroch 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS H.momus 5903 bp RNA RNA 11-JAN-191 DEFINITION Herdmania momus. ACCESSION No information KEYWORDS No information. SOURCE Herdmania momus. ORGANISM Herdmania momus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53538 ID HMRDNAS standard; DNA; INV; 7967 BP. XX AC X53538; XX DT 07-DEC-1990 (annotation) XX DE Herdmania momus rDNA for 18S, 5.8S and 26S ribosomal RNA. XX KW 18S ribosomal RNA; 26S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal DNA; ribosomal RNA; tandem repeat. XX OS Herdmania momus OC Eukaryota; Animalia; Metazoa; Chordata; Tunicata; Ascidiacea; OC Stolidobranchia; Pyuridae. XX RN [1] (bases 1-7967) RA Lavin M.F.; RT ; RL Submitted (15-JUN-1990) on tape to the EMBL Data Library by: RL Lavin M.F., Queensland Institute of Medical Research, Bramston RL Terrace, Herston Qld 4006, Australia. XX RN [2] RA Degnan B.M., Yan J., Hawkins C.J., Lavin M.F.; RT "rRNA genes from the lower chordate Herdmania momus: structural RT similarity with higher eukaryotes"; RL Nucleic Acids Res. 18:7063-7070(1990). XX CC *source: cell type=sperm; clone=sperm; CC Sequence contains an entire rDNA tandem repeat; XX FH Key Location/Qualifiers FH FT rRNA 1..1803 FT /gene="18S ribosomal RNA" FT rRNA 2521..6086 FT /gene="26S ribosomal RNA" FT rRNA 2090..2244 FT /gene="5.8S ribosomal RNA" FT misc_feature 1804..2089 FT /note="ITS1" FT misc_feature 2245..2520 FT /note="ITS2" FT misc_feature 6087..7967 FT /note="IGS" XX XX SQ Sequence 7967 BP; 1858 A; 2000 C; 2430 G; 1679 T; 0 other; BASE COUNT 441 a 399 c 509 g 454 t 4100 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUGA-UAU --GCUUGUCU 61 CAA-|-GAUU AA-GCCAUGC A-GGUGUcgA GU|------- |-------(- ---)[----- 121 ugucgu---- ---------- ---------- ---------- ----aaagug aa-]------ 181 -----|---A CG|U-CGAAa CGGCU-CAUU AAAu-cagu- cuu-gguu-- ----uauuug 241 gucu<----- ---------- ---------- ---------- ---------- --ugugagcg 301 a-agu--g-A UAACUGUGG( -g-cu--)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|guguuc ua|ccCUA-U CAA--CUUUU C-GAAGGUA- 1141 CG(-UUUAGU G)CCU-ACCU Uu-gugaa-U AAC|GGGU-G A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AUUCCC-G( ---aca--)C 1321 GGG--A-GGU -|A|GUGACG A-AA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uaac)GA GGCUC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAUUC -UAAA--CUC UU----AA-C GA-GUAUC-- ----->C-UU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC CAGCC|GCGG GU-AA)UUCC GA-|CUCCAA 1621 C-AGUGUA|U GCUAA--AGU GGUUG-CGG| UUG--AAAAG -UCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucu----- -gggu-gggu gucgu--c-g g-u-cggucc gucgcaag-- ---------- 1801 ---------- --gc-guguc a-c---uggc ggcggcgcug c-cucgu--- -----auucg 1861 guuc------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- u-ucgucggu gcuc(uugac 2161 u----)gag- ---------- ---------- -uguc-g--g cgcu------ ---------- 2221 ---ggccgga aaa------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCug ---------- ---------- ---------- ---------- 2521 -----ugccu -gcaua-ug- uUGCAUGGAA -------|UA -AUGGAA-UA -G-ACcUccu 2581 uuu------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggag --cacg-AG- G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAGA|CAGA ---------- 3001 ---CUUUUCG UC|--CGUAC UCUGCCG-UU -AGAG(GU-G AAA---)UUC U-UGGA-C-- 3061 GGCGG-AAG- A-CGAACCUA CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCUU -UAA-U|CAa g-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACU-AU AAACGAUGCC AAC|UA|--- 3421 --gcgau-cg gga-g-g--- ----(-cguu accaug---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---cagac-c u-uc-ccg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGAAGU AC--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCA--CA )CGGG--AA- -CU-ACC-GG C-[c-g-aca 4081 cagg-aagaa uugacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GGC 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CAU-GC UAAAUAGUua c--gcgaccu g--------- --uu-cg-gu 4381 c--------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ggcgucu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Agu-g -g-c(----- 5041 --gcuua-)g cca----acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CGCGCGCU ACACU--G-A AUGAA----- ---------- 5281 ---(------ ----)[gcag cgugugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---c------ 5401 uaaccua--g gcc(gaaa-) ggucc----g gguaacccgu -ugaac]--- ---------- 5461 -------CCC AUU-C-G--- UGAU-U-GGG AUAGGGACU( UGCAAUUA)U U-CCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-a cc-auu---g aa-ugguuu- 5641 agu-gaga-u cc-uugga-u ugg-cccu-g ucg-cggcug ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -----cggcc gggg-cggg- 5761 acg----ccg -agga-|gac -gaucaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUUA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (10)-Verte 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (11)-Gnath 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (12)-Bony 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bony vertebrates. ACCESSION No information KEYWORDS No information. SOURCE Bony vertebrates. ORGANISM Bony vertebrates. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (13)-lobe 5903 bp RNA RNA 13-JAN-1999 DEFINITION Lobe-finned fish and tetrapod clade. ACCESSION No information KEYWORDS No information. SOURCE Lobe-finned fish and tetrapod clade. ORGANISM Lobe-finned fish and tetrapod clade. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (14)-Tetra 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (15)-Amnio 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (16)-Mamma 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (17)-Theri 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (18)-Euthe 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS O.cuniculu 5903 bp RNA RNA 11-JAN-191 DEFINITION Oryctolagus cuniculus. ACCESSION No information KEYWORDS No information. SOURCE Oryctolagus cuniculus. ORGANISM Oryctolagus cuniculus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X06778 LOCUS RABRRN18S 1863 bp ss-rRNA RNA 30-SEP-1988 DEFINITION Rabbit 18S rRNA. ACCESSION X06778 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE rabbit (Oryctolagus cuniculus). ORGANISM Oryctolagus cuniculus Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria; Lagomorpha. REFERENCE 1 (bases 1 to 1863) AUTHORS Rairkar,A. and Rubino,H.M. JOURNAL Unpublished (1988) Cornell U Med College, New York, NY 10021, USA STANDARD simple automatic REFERENCE 2 (bases 1 to 1863) AUTHORS Rairkar,A., Rubino,H.M. and Lockard,R.E. TITLE ; JOURNAL Nucl Acid Res (1988) In press STANDARD simple automatic COMMENT *source: strain=New Zealand; cell type=reticulocyte; FEATURES from to/span description rRNA 1 1863 18S rRNA BASE COUNT 420 a 484 c 547 g 412 t ORIGIN BASE COUNT 420 a 484 c 547 g 412 t 4040 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 gucg<----- ---------- ---------- ---------- -------cuc gcuccucucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gacccauuc -ga|acgucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GU(-CGCCGU G)CCU-ACCA U-|GGUGA-C CAC|GGGU-G A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acc--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----CCACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-C(GCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuuGUGG AGGGU-GCGU AGCGG--G-C G-GU-CCGCC GCGAGGCG-- ---------- 1801 ---------- --AG--CCAC C-G---CCCG UCCCCGCCCC U-UGCCU--- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-CCCUCGAU GCUC(UUAGC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G CGGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCCC G--------- ---------- ---------- ---------- 2521 --AGCCGCCU GGAUAC-CG- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACcGCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-AG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGCCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GGCGC-AAG- A-CGGACC-A GAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gcgau-gc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-cagga uugacaga(u ugauagc)-- --ucuuucuc gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACucu-gg|- ---------- 4321 ------(--- --)[CAU-GC UAACUAGuua c--gcgaccc ccga------ --gc-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cguccccc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac---ccg aGaU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC -GGG-GCUGC A-CGCGCGCU ACACU--G-A CUGGC----- ---------- 5281 ---(------ ----)[ucag cgugugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-ac gcc(ggca-) ggcgc----g gguaacccgu -ugaac]--- ---------- 5461 -------ccc auu-c-g--- uGAU-G-GGG AUCGGGGAU( UGCAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-c cc-ucgga-u cgg-ccc--g ccg-gggucg ---------- ---------- 5701 -------(gc cca---)--- ---------- ---------- -----cggcc cugg-cgga- 5761 gcg----cug -agaa-|gac -ggucgaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (19)-Prima 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... ....-..... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS H.sapien.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Homo sapiens. ACCESSION No information KEYWORDS No information. SOURCE Homo sapiens. ORGANISM Homo sapiens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M10098 LOCUS HUMRGE 1969 bp ds-DNA PRI 02-MAY-1986 DEFINITION Human 18S rRNA gene, complete. ACCESSION M10098 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Human DNA, library of T.Maniatis, clones pHR[10-2,11-1] and lambda-121. ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria; Primates; Anthropoidea; Hominoidea; Hominidae. REFERENCE 1 (bases 62 to 1969) AUTHORS Torczynski,R.M., Fuke,M. and Bollon,A.P. TITLE Cloning and sequencing of a human 18S ribosomal RNA gene JOURNAL DNA 4, 283-291 (1985) STANDARD full staff_review REFERENCE 2 (bases 1 to 1969) AUTHORS Torczynski,R.M. JOURNAL Unpublished (1985) Wadley Inst of Mol Med, Dallas, Tx 75235 STANDARD full staff_review COMMENT Draft entry and sequence in computer-readable form for [1] kindly provided by R.M.Torczynski, 04-NOV-1985. Since rRNA gene units occur in tandemly linked arrays, it is remotely possible that clones pHR10-2 and pHR11-1 contained sequences from different repeat units potentially present in the 12-kb insert of lambda-121. FEATURES from to/span description rRNA 102 1969 18S ribosomal RNA BASE COUNT 422 a 546 c 578 g 418 t 5 others ORIGIN 262 bp upstream of XbaI site. BASE COUNT 419 a 498 c 549 g 402 t 4035 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 gucg<----- ---------- ---------- ---------- -------cuc gcuccucucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gacccauuc -ga|acgucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GU(-CGCCGU G)CCU-ACCA U-|GGUGA-C CAC|GGGU-G A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acc--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----CCACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu---- --GGG-AGCG GGCGG--G-C G-GU-CCGCC GCGAGGCG-- ---------- 1801 ---------- --AG--CCAC C-G---CCCG UCCCCGCCCC --UUGCCU-- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-CCCUCGAU GCUC(UUAGC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G CGGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCCC G--------- ---------- ---------- ---------- 2521 --AGCCGCCU GGAUAC-CG- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACcGCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-AG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGCCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GGCGC-AAG- A-CGGACC-A GAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|CG|--- 3421 --gcgau-gc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-cagga uugacaga(u ugauagc)-- --ucuuucuc gauu-ccgug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACucu-gg|- ---------- 4321 ------(--- --)[CAU-GC UAACUAGuua c--gcgaccc ccga------ --gc-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cguccccc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac---ccg AGaU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACACU--G-A CUGGC----- ---------- 5281 ---(------ ----)[ucag cgugugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-ac gcc(ggca-) ggcgc----g gguaacccgu -ugaac]--- ---------- 5461 -------ccc auu-c-g--- uGAU-G-GGG AUCGGGGAU( UGCAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-c cc-ucgga-u cgg-cccc-g ccg-gggucg ---------- ---------- 5701 -------(gc cca---)--- ---------- ---------- -----cggcc -ugg-cgga- 5761 gcg----cug -agaa-|gac -ggucgaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS H.sapien.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Homo sapiens. ACCESSION No information KEYWORDS No information. SOURCE Homo sapiens. ORGANISM Homo sapiens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: K03432 LOCUS HUMRGEA 2235 bp ds-DNA PRI 10-NOV-1986 DEFINITION Human 18S rRNA gene. ACCESSION K03432 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Human fetal liver DNA, clones pB and pA4. ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria; Primates; Anthropoidea; Hominoidea; Hominidae. REFERENCE 1 (bases 1 to 2235) AUTHORS Gonzalez,I.L. and Schmickel,R.D. TITLE The human 18S ribosomal RNA gene: Evolution and stability JOURNAL Am. J. Hum. Genet. 38, 419-427 (1986) STANDARD full staff_review REFERENCE 2 (bases 141 to 2010; revises [1]) AUTHORS Gonzalez,I.L. and Schmickel,R.D. JOURNAL Unpublished (1986) Univ. of Pennsylvania, Philadelphia, PA 19104 STANDARD full staff_review COMMENT Draft entry and sequence in computer readable form for [2] kindly provided by I.L.Gonzalez, 15-FEB-1986. FEATURES from to/span description rRNA 141 2010 16S ribosomal RNA BASE COUNT 463 a 639 c 679 g 443 t 11 others ORIGIN 149 bp upstream of Sau3A site. BASE COUNT 419 a 500 c 549 g 402 t 4033 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 gucg<----- ---------- ---------- ---------- -------cuc gcuccucucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gacccauuc -ga|acgucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GU(-CGCCGU G)CCU-ACCA U-|GGUGA-C CAC|GGGU-G A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acc--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----CCACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu---- --GGG-AGCG GGCGG--G-C G-GU-CCGCC GCGAGGCG-- ---------- 1801 ---------- --AG--cCAC C-G---CCCG UCCCCGCCCC U-UGCCU--- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-CCCUCGAU GCUC(UUAGC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G CGGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCCC G--------- ---------- ---------- ---------- 2521 --AGCCGCCU GGAUAC-CG- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACcGCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-AG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGCCG-CU -AGAG(GU-G AAA---)UUC CUUGGA-C-C 3061 GGCGC-AAG- A-CGGACC-A GAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|CG|--- 3421 --gcgau-gc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-cagga uugacaga(u ugauagc)-- --ucuuucuc gauu-ccgug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACucu-gg|- ---------- 4321 ------(--- --)[CAU-GC UAAcUAGuua c--gcgaccc ccga------ --gc-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cguccccc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac---ccg AGaU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACACU--G-A CUGGC----- ---------- 5281 ---(------ ----)[ucag cgugugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-ac gcc(ggca-) ggcgc----g gguaacccgu -ugaac]--- ---------- 5461 -------ccc auu-c-g--- uGAU-G-GGG AUCGGGGAU( UGCAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-c cc-ucgga-u cgg-cccc-g ccg-gggucg ---------- ---------- 5701 -------(gc cca---)--- ---------- ---------- -----cggcc cugg-cgga- 5761 gcg----cug -agaa-|gac -ggucgaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS (19)-Roden 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS M.musculus 5903 bp RNA RNA 13-JAN-1985 DEFINITION mouse. ACCESSION No information KEYWORDS No information. SOURCE mouse. ORGANISM mouse. REFERENCE 1 (bases 1 to 6326) AUTHORS No information JOURNAL 263 (1984) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X00686 Phylo:Eukaryotes,Animal,Mammal Mus musculus BASE COUNT 417 a 497 c 550 g 405 t 4034 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 gucg<----- ---------- ---------- ---------- -------cuc gcuccucucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gacccauuc -ga|acgucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GU(-CGCCGU G)CCU-ACCA U-|GGUGA-C CAC|GGGU-G A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acc--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----CCACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu---- --GGG-AGCG GGCGG--G-C G-GU-CCGCC GCGAGGCG-- ---------- 1801 ---------- --AG--uCAC C-G---CCCG UCCCCGCCCC U-UGCCU--- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-CCCUCGAU GCUC(UUAGC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G CGGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCCC G--------- ---------- ---------- ---------- 2521 --AGCCGCCU GGAUAC-CG- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACcGCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-AG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGCCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GGCGC-AAG- A-CGGACC-A GAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gcgau-gc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 -GCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-cagga uugacaga(u ugauagc)-- --ucuuucuc gauu-ccgug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACucu-gg|- ---------- 4321 ------(--- --)[CAU-GC UAAcUAGuua c--gcgaccc ccga------ --gc-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cguccccc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac---ccg AGaU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACACU--G-A CUGGC----- ---------- 5281 ---(------ ----)[ucag cgugugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-gc gcc(ggca-) ggcgc----g gguaacccgu -ugaac]--- ---------- 5461 -------ccc auu-c-g--- uGAU-G-GGG AUCGGGGAU( UGCAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-c cc-ucgga-u cgg-cccc-g ccg-gggucg ---------- ---------- 5701 -------(gc cca---)--- ---------- ---------- -----cggcc cugg-cgga- 5761 gcg----cug -agaa-|gac -ggucgaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS R.norveg.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: K01593 LOCUS RATRGE4A 1874 bp ds-DNA ROD 15-JUN-1989 DEFINITION Rat 18S rRNA gene. ACCESSION K01593 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Rat DNA, clone charon 4a. ORGANISM Rattus norvegicus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 1874) AUTHORS Chan,Y.-L., Gutell,R., Noller,H.F. and Wool,I.G. TITLE The nucleotide sequence of a rat 18S ribosomal ribonucleic acid gene and a proposal for the secondary structure of 18s ribonucleic acid JOURNAL J. Biol. Chem. 259, 224-230 (1984) STANDARD simple staff_review COMMENT [1] proposes a secondary structure model for rat 28S rRNA and notes that while the primary sequences of rat and eubacterial rRNAs are different, the deduced secondary structures are remarkably similar. FEATURES from to/span description rRNA 1 1874 18S rRNA BASE COUNT 421 a 497 c 548 g 408 t ORIGIN BASE COUNT 421 a 497 c 548 g 408 t 4029 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 gucg<----- ---------- ---------- ---------- -------cuc gcuccucucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gacccauuc -ga|acgucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GU(-CGCCGU G)CCU-ACCA U-|GGUGA-C CAC|GGGU-G A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acc--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----CCACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu---- --GGG-AGCG GGCGG--G-C G-GU-CCGCC GCGAGGCG-- ---------- 1801 ---------- --GC-uCAGC G-C---CCUG UCCCCAGCCC C-UGCCU--- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-CCCUCGAU GCUC(UUAGC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G CGGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCCC G--------- ---------- ---------- ---------- 2521 --AGCCGCCU GGAUAC-CG- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACcGCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-AG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGCCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GGCGC-AAG- A-CGAACC-A GAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gcgau-gc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-cagga uugacagg(u ugauagc)-- --ucuuucuc gauu-ccgug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACucucGG|- ---------- 4321 ------(--- --)[CAU-GC UAACUAGuua c--gcgaccc ccga------ --gc-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cguccccc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac----cg aGaU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACACU--GAA CUGGU----- ---------- 5281 ---(------ ----)[ucag cgugugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-ac gcc(ggca-) ggcgc----g gguaacccgu -ugaac]--- ---------- 5461 -------ccc auu-c-g--- uGAU-G-GGG AUCGGGGAU( UGCAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-c cc-ucgga-u cgg-cccc-g ccg-gggucg ---------- ---------- 5701 -------(gc cca---)--- ---------- ---------- -----cggcc uugg-cgga- 5761 ggc----cug -agaa-|gac -ggucgaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS R.norveg.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M11188 LOCUS RATRGEA 1920 bp ds-DNA ROD 04-AUG-1986 DEFINITION Rat 18S rRNA gene, complete. ACCESSION M11188 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Rat (Sprague Dawley) DNA, clones pDF[8,15,40]. ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Mammalia; Eutheria; Rodentia. REFERENCE 1 (bases 1 to 1920) AUTHORS Torczynski,R., Bollon,A.P. and Fuke,M. TITLE The complete nucleotide sequence of the rat 18S ribosomal RNA gene and comparison with the respective yeast and frog genes JOURNAL Nucleic Acids Res. 11, 4879-4890 (1983) STANDARD simple staff_review REFERENCE 2 (bases 1 to 1920; revisions of [1]) AUTHORS Torczynski,R.M., Fuke,M. and Bollon,A.P. TITLE Cloning and sequencing of a human 18S ribosomal RNA gene JOURNAL DNA 4, 283-291 (1985) STANDARD simple staff_review COMMENT Highly conserved regions of 18S rRNA among species are located at positions 431-506, 607-672 and 1832-1910. FEATURES from to/span description rRNA 11 1880 18S rRNA revision 266 268 cgg in [2]; cg in [1] revision 420 420 g in [2]; a in [1] BASE COUNT 425 a 515 c 563 g 417 t ORIGIN 601 bp upstream of BamHI site. BASE COUNT 420 a 498 c 545 g 407 t 4033 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 -ucg<----- ---------- ---------- ---------- -------cuc gcuccucucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gacccauuc -ga|acgucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GU(-CGCCGU G)CCU-ACCA U-|GGUGA-C CAC|GGGU-G A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acc--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----CCACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu---- --GGG-AGCG GGCGG--G-C G-GU-CCGCC GCGAGGCG-- ---------- 1801 ---------- --AG--UCAC C-G---CCCG UCCCCGCCCC U-UGCCU--- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-CCCUCGAU GCUC(UUAGC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G CGGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCCC G--------- ---------- ---------- ---------- 2521 --AGCCGCCU AGAUAC-CG- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACcGCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-AG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGCCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GGCGC-AAG- A-CGGACC-A GAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gcgau-gc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 -GCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-cagga uugacaga(u ugauagc)-- --ucuuucuc gauu-ccgug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACucu-gg|- ---------- 4321 ------(--- --)[CAU-GC UAACUAGuua c--gcgaccc ccga------ --gc-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cguccccc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac---ccg aGaU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACACU--G-A CUGGC----- ---------- 5281 ---(------ ----)[ucag cgugugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-ac gcc(ggca-) ggcgc----g gguaacccgu -ugaac]--- ---------- 5461 -------ccc auu-c-g--- uGAU-G-GGG AUCGGGGAU( UGCAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-c cc-ucgga-u cgg-cccc-g ccg-gggucg ---------- ---------- 5701 -------(gc cca---)--- ---------- ---------- -----cggcc uug--cgga- 5761 gcg----cug -agaa-|gac -ggucgaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS (15)-Amphi 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .....-.... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS X.borealis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X59733 LOCUS XEL28SRRNA 7618 bp ss-mRNA VRT 04-DEC-1991 DEFINITION X.borealis 28S ribosomal RNA gene for 28S rRNA ACCESSION X59733 KEYWORDS 18S ribosomal RNA; 28S ribosomal RNA gene; 40S ribosomal subunit; 5.8S ribosomal DNA; ribosomal RNA transcription unit. SOURCE Xenopus borealis RNA. ORGANISM Xenopus borealis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia; Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae; Xenopodinae. REFERENCE 1 (bases 1 to 7618) AUTHORS Ajuh,P.M., Heeney,P.A., Maden,B.E. and Edward,H. TITLE Xenopus borealis and Xenopus laevis 28S ribosomal DNA and its complete 40S ribosomal precursor RNA coding units of both species JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 245, 65-71 (1991) STANDARD full automatic COMMENT *source: clone=pXbr101; From EMBL entry XB28SRRNA; dated 19-NOV-1991. FEATURES Location/Qualifiers rRNA 1..162 /product="5.8S" misc_feature 1..336 /note="internal transcribed spacer 2" misc_feature 1..554 /note="internal transcribed spacer 1" misc_feature 1..612 /note="external transcribed spacer" rRNA 1..1826 /product="18S" rRNA 1..4128 /product="28S" /gene="28S RNA" BASE COUNT 1414 a 2397 c 2584 g 1223 t ORIGIN BASE COUNT 435 a 465 c 515 g 411 t 4077 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-CGUGU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 aucg<----- ---------- ---------- ---------- ---------c uccauc-ugu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauacauuc -gg|augucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CU(-UUCUGC G)CCU-ACCA U-|GGUGA-C CAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acg--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu---- --GGG-AUCG AGCUG--G-C G-GU-CCGCC GCAAGGCG-- ---------- 1801 ---------- --ag-c-UAC C-G---CCUG UCCCAGCCCC U--GCCU--- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-UCCCCGAU GCUC(UUGAC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G -GGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCCA-A G--CAGGCC- G--------- ---------- ---------- ---------- 2521 --CGUCGCCU GGAUAC-UU- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACuCCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-GG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGUGCCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GGCGC-AAG- A-CGAACC-A AAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gcgau-cc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cga-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-aagga uugacaga(u ugauagc)-- --ucuuucuc gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCC-UC|- ---------- 4321 ------(--- --)[CAU-GC UAACUAGUua c--gcgaccc ccgg------ ---c-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cgucc----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac---acg AGAU-CGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ucag cgugugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-gc gcc(gaca-) ggugc----g gguaacccgc -ugaac]--- ---------- 5461 -------ccc guu-c-g--- uGAU-A-GGG AUCGGGGAU( UGCAAUUA)U UUCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUCGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-u cc-ucgga-u cgg-cccc-g ccg-gggucg ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -----cggcc cugg-cgga- 5761 gcg----ccg -agaa-|gac -gaucaaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS X.laevis.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: K01373 LOCUS XELRGEO14 1825 bp DNA VRT 01-OCT-1984 DEFINITION X.laevis oocyte 18S rRNA gene (complete); clones pXlr14, pXlr11, uncloned rDNA. ACCESSION K01373 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Xenopus laevis DNA; clones pXlr14, pXlr11, uncloned rDNA. ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Amphibia; Anura; Pipidae. REFERENCE 1 (bases 1 to 1825) AUTHORS Maden,B.E.H., Forbes,J.M., Stewart,M.A. and Eason,R. TITLE 18S coding sequences in amplified ribosomal DNA from Xenopus laevis oocytes are highly homogeneous, unmethylated, and lack major open reading frames JOURNAL EMBO J. 1, 597-601 (1982) STANDARD simple staff_review FEATURES from to/span description rRNA 1 1825 18S rRNA BASE COUNT 432 a 466 c 516 g 411 t ORIGIN 5' end of mature 18S rDNA. BASE COUNT 432 a 466 c 516 g 411 t 4078 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-CGUGU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 aucg<----- ---------- ---------- ---------- ---------c uccauc-ugu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauacauuc -gg|augucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CU(-UUCUGC G)CCU-ACCA U-|GGUGA-C CAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acg--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu---- --GGG-AUCG AGCUG--G-C G-GU-CCGCC GCGAGGCG-- ---------- 1801 ---------- ---g-c-UAC C-G---CCUG UCCCAGCCCC U--GCCU--- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-UCCCCGAU GCUC(UUGAC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G -GGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCCA-A G--CAGGCC- G--------- ---------- ---------- ---------- 2521 --CGUCGCCU GGAUAC-UU- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACuCCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-GG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGUGCCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GGCGC-AAG- A-CGAACC-A AAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gcgau-cc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cga-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-aagga uugacaga(u ugauagc)-- --ucuuucuc gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCC-UC|- ---------- 4321 ------(--- --)[CAU-GC UAACUAGUua c--gcgaccc ccgg------ ---c-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cgucc----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----A-ACU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac---acg AGAU-CGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ucag cgugugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-gc gcc(gaca-) ggugc----g gguaacccgc -ugaac]--- ---------- 5461 -------ccc guu-c-g--- uGAU-A-GGG AUCGGGGAU( UGCAAUUA)U UUCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUCGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-u cc-ucgga-u cgg-cccc-g ccg-gggucg ---------- ---------- 5701 -------(gc ca----)--- ---------- ---------- -----cggcc cugg-cgga- 5761 gcg----ccg -agaa-|gac -gaucaaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS X.laevis.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X04025 LOCUS XELRRN18S 1826 bp ss-rRNA RNA 31-DEC-1987 DEFINITION Xenopus laevis 18S ribosomal RNA. ACCESSION X04025 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE clawed frog (Xenopus laevis). ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Vertebrata; Tetrapoda; Amphibia; Anura; Pipidae. REFERENCE 1 (bases 1 to 1826; enum. 1 to 1826) AUTHORS Maden,B.E.H. TITLE Identification of the locations of the methyl groups in 18 S ribosomal RNA from Xenopus laevis and man JOURNAL J. Mol. Biol. 189, 681-699 (1986) STANDARD simple automatic COMMENT EMBL features not translated to GenBank features: key from to description MODBASE 27 27 2'-O-methyladenosine MODBASE 99 99 2'-O-methyladenosine MODBASE 116 116 2'-O-methyluridine MODBASE 121 121 2'-O-methyluridine MODBASE 163 163 2'-O-methyladenosine MODBASE 393 393 2'-O-methyluridine MODBASE 401 401 2'-O-methylguanosine MODBASE 427 427 2'-O-methylcytidine MODBASE 433 433 2'-O-methyladenosine MODBASE 449 449 2'-O-methyladenosine MODBASE 474 474 2'-O-methyladenosine MODBASE 477 477 2'-O-methyladenosine MODBASE 482 482 2'-O-methylcytidine MODBASE 541 541 2'-O-methyladenosine MODBASE 555 555 2'-O-methyladenosine MODBASE 566 566 2'-O-methyladenosine MODBASE 592 592 2'-O-methyluridine MODBASE 609 609 2'-O-methylguanosine MODBASE 633 633 2'-O-methyladenosine MODBASE 648 648 2'-O-methylguanosine MODBASE 760 760 2'-O-methylcytidine MODBASE 762 762 2'-O-methyluridine MODBASE 993 993 2'-O-methyladenosine MODBASE 1210 1210 1-methylpseudouridine MODBASE 1250 1250 2'-O-methyluridine MODBASE 1288 1288 2'-O-methyluridine MODBASE 1290 1290 2'-O-methylguanosine MODBASE 1345 1345 2'-O-methyladenosine MODBASE 1353 1353 2'-O-methylcytidine MODBASE 1400 1400 2'-O-methyluridine MODBASE 1408 1408 2'-O-methylguanosine MODBASE 1597 1597 7-methylguanosine MODBASE 1636 1636 2'-O-methyladenosine MODBASE 1661 1661 2'-O-methylcytidine MODBASE 1761 1761 2'-O-methyluridine MODBASE 1789 1789 N6-methyladenosine MODBASE 1807 1807 2-methyl-N6 methyladenosine MODBASE 1808 1808 2-methyl-N6 methyladenosine FEATURES from to/span description rRNA 1 1826 18S ribosomal RNA BASE COUNT 433 a 466 c 516 g 411 t ORIGIN BASE COUNT 433 a 466 c 516 g 411 t 4077 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-CGUGU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 aucg<----- ---------- ---------- ---------- -------cuc cauc---ugu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauacauuc -gg|augucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CU(-UUCUGC G)CCU-ACCA U-|GGUGA-C CAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acg--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu---- --GGG-AUCG AGCUG--G-C G-GU-CCGCC GCGAGGCG-- ---------- 1801 ---------- --ag-c-UAC C-G---CCUG UCCCAGCCCC U--GCCU--- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-UCCCCGAU GCUC(UUGAC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G -GGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCCA-A G--CAGGCC- G--------- ---------- ---------- ---------- 2521 --CGUCGCCU GGAUAC-UU- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACuCCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-GG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGUGCCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GGCGC-AAG- A-CGAACC-A AAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gcgau-cc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cga-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-aagga uugacaga(u ugauagc)-- --ucuuucuc gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCC-UC|- ---------- 4321 ------(--- --)[CAU-GC UAACUAGUua c--gcgaccc ccgg------ ---c-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cgucc----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac---acg AGaU-CGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ucag cgugugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-gc gcc(gaca-) ggugc----g gguaacccgc -ugaac]--- ---------- 5461 -------ccc guu-c-g--- uGAU-A-GGG AUCGGGGAU( UGCAAUUA)U UUCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUCGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-u cc-ucgga-u cgg-cccc-g ccg-gggucg ---------- ---------- 5701 -------(gc ca----)--- ---------- ---------- -----cggcc cugg-cgga- 5761 gcg----ccg -agaa-|gac -gaucaaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS X.laevis.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X59734 LOCUS XEL28SR 7634 bp ss-mRNA VRT 16-DEC-1991 DEFINITION X.laevis 28S ribosomal RNA gene for 28S rRNA ACCESSION X59734 KEYWORDS 18S ribosomal RNA; 28S ribosomal RNA gene; 40S ribosomal subunit; 5.8S ribosomal DNA; ribosomal RNA transcription unit. SOURCE Xenopus laevis RNA. ORGANISM Xenopus laevis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia; Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae; Xenopodinae. REFERENCE 1 (bases 1 to 7634) AUTHORS Ajuh,P.M., Heeney,P.A., Maden,B.E. and Edward,H. TITLE Xenopus borealis and Xenopus laevis 28S ribosomal DNA and its complete 40S ribosomal precursor RNA coding units of both species JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 245, 65-71 (1991) STANDARD full automatic COMMENT *source: clone=pXlr101A; From EMBL entry XL28SR; dated 19-NOV-1991. FEATURES Location/Qualifiers rRNA 1..162 /product="5.8S" misc_feature 1..262 /note="internal transcribed spacer 2" misc_feature 1..557 /note="internal transcribed spacer 1" misc_feature 1..712 /note="external transcribed spacer" rRNA 1..1826 /product="18S" rRNA 1..4115 /product="28S" /gene="28S RNA" BASE COUNT 1379 a 2461 c 2610 g 1184 t ORIGIN BASE COUNT 433 a 466 c 516 g 411 t 4077 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-CGUGU-AA GU|------- |-------(- ---)[----- 121 acgcacg--- -------g-- ---------c ---------- cgguacagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuug 241 aucg<----- ---------- ---------- ---------- ---------c uccauc-ugu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauacauuc -gg|augucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CU(-UUCUGC G)CCU-ACCA U-|GGUGA-C CAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---acg--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu---- --GGG-AUCG AGCUG--G-C G-GU-CCGCC GCGAGGCG-- ---------- 1801 ---------- --ag-c-UAC C-G---CCUG UCCCAGCCCC U--GCCU--- -----C---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----U-CGGC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------GC C-UCCCCGAU GCUC(UUGAC 2161 U----)GAG- ---------- ---------- -UGUC-CC-G -GGG------ ---------- 2221 ---GCCCGAA GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCCA-A G--CAGGCC- G--------- ---------- ---------- ---------- 2521 --CGUCGCCU GGAUAC-UU- CAGCUAGGAA -------|UA -AUGGAA-UA -GGACuCCGG 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---CUG-GG- G-CCA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGC ---------- 3001 --CGGGGGCA UU|--CGUAU UGUGCCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GGCGC-AAG- A-CGAACC-A AAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CG--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gcgau-cc ggc-g-gcgu uau-(----- uccc-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-cga-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCCGG CC[cgg-aca 4081 cgga-aagga uugacaga(u ugauagc)-- --ucuuucuc gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCC-UC|- ---------- 4321 ------(--- --)[CAU-GC UAACUAGUua c--gcgaccc ccgg------ ---c-gg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgg cgucc----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuca-)g ccac---acg AGAU-CGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ucag cgugugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuacccu-gc gcc(gaca-) ggugc----g gguaacccgc -ugaac]--- ---------- 5461 -------ccc guu-c-g--- uGAU-A-GGG AUCGGGGAU( UGCAAUUA)U UUCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GGG (-UCAUAAG- )CUCGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAUU--G GA-UGGuuu- 5641 agu-gagg-u cc-ucgga-u cgg-cccc-g ccg-gggucg ---------- ---------- 5701 -------(gc ca----)--- ---------- ---------- -----cggcc cugg-cgga- 5761 gcg----ccg -agaa-|gac -gaucaaacu ug-acu-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (9)-Echino 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS A.amurensi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D14358 LOCUS ASR18SB 1663 bp ds-DNA INV 19-APR-1994 DEFINITION Asterias amurensis 18S rDNA gene for 18S rRNA. ACCESSION D14358 KEYWORDS 18S rRNA. SOURCE Asterias amurensis DNA. ORGANISM Asterias amurensis Eukaryota; Animalia; Eumetazoa; Echinodermata; Asterozoa; Stelleroidea; Asteroidea; Forcipulata; Asteriidae. REFERENCE 1 (bases 1 to 1663) AUTHORS Wada,H. and Satoh,N. TITLE Details of the volutionary history from invertebrates to vertebrates, as deduced from the sequences of 18S rDNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1801-1804 (1994) STANDARD full automatic COMMENT Submitted (03-FEB-1993) to DDBJ by: Hiroshi Wada Department of Zoology Faculty of Science Kyoto University Kitashirakawa-Oiwakecho Sakyo-ku, Kyoto 606-01 Japan Phone: 075-753-4081 Fax: 075-751-614. NCBI gi: 473519 FEATURES Location/Qualifiers source 1..1663 /organism="Asterias amurensis" /sequenced_mol="DNA" BASE COUNT 391 a 410 c 484 g 378 t ORIGIN BASE COUNT 391 a 410 c 484 g 378 t 4240 others ORIGIN 1 |~~~~~~~~~ ~~~~~~nnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nn nnnnn----n ---------- nnnaaaagug aa-]------ 181 -----|---A CU|G-CGGAu CGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuugg 241 agcg<----- ---------- ---------- ---------- ---------- ---caucccu 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggauccuuc -ga|augucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UUAUGC G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCU(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCG-A( ---cac--)- 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------ag caauacagg- -acuc(---- ---uuuc)ga ggccc-ggua a-uugGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuugggc gcagc-gugg cgguc--c-g c-aaggc--- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---cgcacug cccgccuggc cuuccucucg gucu-ccgcc c--------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --gguucucu 2161 u----gacu- ---------- ---------- -gagugccgg gcgc------ ---------- 2221 ---gc--gaa ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUGGA 2461 GUGUUCAA-A G--CAGGCCG ug-------- ---------- ---------- ---------- 2521 -----aGCCU GGACAG-CA- GAGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -GC-GUUGGU -UU-UC---- ------ggaa ---cucg-AG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cuga ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGUG-UG -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-AAG- A-CGACCG-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC GAC|UC|--- 3421 ---ggau--c gcc-ggc-g- -------uua cuccaauga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-gg-cgg-g -c-agucu-- ---------- ----gcGG(- 3661 GAAA-)CCa- -aAGUC-uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCCGG CC[cgg-aca 4081 cagu-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CUU-GC UAAAUAGucg c---gccggc -------cgc cga------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc cgccgc-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGU-G -C-G(----- 5041 ---guuca)G CCAC---GCG AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GC-GC A-CGCGCGCU ACACU--g-a aggga----- ---------- 5281 ---(------ ----)[ucag cgggugaucg u--------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ccu-ug ucu(ggaa-) ggccu----g ggcaau-ccg cugaac]--- ---------- 5461 -------ccc cuu-c-g--- UGCU-U-GGG AUAGGGACU( UGCAAUUG)U CUCCCUUA-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-AAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gaga-u cc-ucgga-c ggg---ccgc ggcggggcgc c--------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ----ggcgcc ucgc-ucgu- 5761 gcg----ccc -ggaa-|gac -caucgaacu un-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnn---- 5881 --nnn----- -------~|| ||| // LOCUS O.japonicu 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D14361 LOCUS OPJ18SE 1700 bp ds-DNA INV 19-APR-1994 DEFINITION Ophioplocus japonicus 18S rDNA gene for 18S rRNA. ACCESSION D14361 KEYWORDS 18S rRNA. SOURCE Ophioplocus japonicus DNA. ORGANISM Ophioplocus japonicus Eukaryota; Animalia; Eumetazoa; Echinodermata; Asterozoa; Stelleroidea; Ophiuroidea; Myophiurida; Ophiuridae. REFERENCE 1 (bases 1 to 1700) AUTHORS Wada,H. and Satoh,N. TITLE Details of the volutionary history from invertebrates to vertebrates, as deduced from the sequences of 18S rDNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1801-1804 (1994) STANDARD full automatic COMMENT Submitted (03-FEB-1993) to DDBJ by: Hiroshi Wada Department of Zoology Faculty of Science Kyoto University Kitashirakawa-Oiwakecho Sakyo-ku, Kyoto 606-01 Japan Phone: 075-753-4081 Fax: 075-751-614. NCBI gi: 473546 FEATURES Location/Qualifiers source 1..1700 /organism="Ophioplocus japonicus" /sequenced_mol="DNA" BASE COUNT 421 a 399 c 473 g 407 t ORIGIN BASE COUNT 421 a 399 c 473 g 407 t 4203 others ORIGIN 1 |~~~~~~~~~ ~~~~~~nnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn AA-GCCAUGC A-UGUGU-UA GU|------- |-------(- ---)[----- 121 ---------- --------ac aagcu----u ---------- guaucaagcg aa-]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- cau-gguu-- ----ccuugg 241 aacg------ ---------- ---------- ---------- ---------- --aguugccc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- aga-uccuuc -aa|acgucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UUAUGC G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCUC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa caauacagg- -acuc(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--UGC UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuagggc ucagg-cuaa cgguc--c-c u-cgcaaggg g--ugca--- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 -------cug uuugaccuag ccucccucgc gguuugcgcc c--------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --gguucucu 2161 u----aacu- ---------- ---------- -gagugccgg uugc------ ---------- 2221 ---gaccgaa ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUGGA 2461 GUGUUCAA-A G--CAGGCGC AA-------- ---------- ---------- ---------- 2521 ---c-aGCCU GAACAG-CA- GAGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -GC-GUUGGU -UU-UC---- ------ggag ---uccg-AG G-UAA-UGAU UGAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cuga ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGUG-UG -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-AAG- A-CGACCG-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACUAUGCC GGC|AC|--- 3421 --gcauu--c gcc-ggc-g- -------uua cuccaauga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-a c-gg-cua-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CUU-GC UAAAUAGuug c---gccacc cgc-----cg ag-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------g ugg-cgac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Agu-g -g-c(----- 5041 ---guuua)g ccac---gcg aga--UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GC-GC A-CGCGCGCU ACACU--g-a aggaa----- ---------- 5281 ---(------ ----)[ucag cgugugucu- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(ggaa-) ggucu----g gguaau-ccg uugaac]--- ---------- 5461 -------cuc uuu-c-g--- UGAU-U-GGG AUAGGGAAU( UGUAAUUG)U UUCCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-ACG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gaga-u cc-ucgga-u cgg-ccgg-g ucg-ggccgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------ccgg cucg-aucc- 5761 ugcg---ccg -agaa-|gac -caucaaacn nn-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnn---- 5881 --nnnn---- -------~|| ||| // LOCUS O.aculeata 5903 bp RNA RNA 11-JAN-191 DEFINITION Ophiopholis aculeata. ACCESSION No information KEYWORDS No information. SOURCE Ophiopholis aculeata. ORGANISM Ophiopholis aculeata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L28056 LOCUS SUSRGE 1801 bp ds-DNA INV 07-JUL-1994 DEFINITION Strongylocentrotus purpuratus 18S ribosomal DNA (18S rDNA). ACCESSION L28056 KEYWORDS 18S rRNA; 18S ribosomal RNA; PCR amplified. SOURCE Strongylocentrotus purpuratus DNA. ORGANISM Strongylocentrotus purpuratus Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa; Echinoidea; Echinacea; Echinoida; Strongylocentrotidae. REFERENCE 1 (bases 1 to 1801) AUTHORS Turbeville,J.M., Schulz,J.R. and Raff,R.A. TITLE Deuterostome phylogeny and the sister group of the chordates: Evidence from molecules and morphology JOURNAL Mol. Biol. Evol 11, 648-655 (1994) STANDARD full automatic COMMENT NCBI gi: 508604 FEATURES Location/Qualifiers source 1..1801 /organism="Strongylocentrotus purpuratus" /sequenced_mol="DNA" BASE COUNT 457 a 410 c 495 g 439 t ORIGIN BASE COUNT 457 a 410 c 495 g 439 t 4102 others ORIGIN 1 |~~~~~~~~~ ~~~~~~ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-UA GU|------- |-------(- ---)[----- 121 ---------- --------ac aagcu----u ---------- guaucaagcg aa-]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- cau-gguu-- ----ccuugg 241 aacg<----- ---------- ---------- ---------- ---------- --aguugccc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- agaaaccauc -aa|acgucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UUAUGC G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCUC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G -U-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--UGC UGCUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 uaucuagggc uuggg-cuga ggguc--c-g u-cguaaggg g--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---ugcacuc ugaguaccag ccucccucgc ggcuugucgc cc-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --gguucucu 2161 u----aacu- ---------- ---------- -gagucccgg gugc------ ---------- 2221 ---ggccgga ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUGGA 2461 GUGUUCAA-A G--CAGGCGC AA-------- ---------- ---------- ---------- 2521 ---c-aGCCU GAACAG-UA- GAGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -GC-GUUGGU -UU-UA---- ------agag ---uccg-AG G-UAA-UGAU UCACA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cuga ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGUG-UG -AGAG(GU-G AAA---)UUC U-UGG--U-C 3061 GCCGC-AAG- A-CGACCG-G UAGC(-GAAA )---C|G--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UAUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUACAGGU- UCGAAGGCG( AUAC------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACUAUGCC GAC|C-|--- 3421 --gcgau--u gcc-g-c-gu -------uau auca--aug- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------ac-a c-gg-caa-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUU-uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-ga 4021 g--CUGC-|G CU-UAAUUUG (ACUCAA-CA )CGGGcuAAA ACUCACCCGG CC[cgg-aca 4081 cagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CUU-GC UAAAUAGuug c---gccacc cgc-----cg ag-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------g ugggcgac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AGU-G -G-C(----- 5041 ---guuua)G CCAC---GCG AGA--UUGAG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CGCGCGCU ACACU--G-a aggaa----- ---------- 5281 ---(------ ----)[ucag cgugugucu- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucccu-ug gcc(ggaa-) ggucu----g ggaaau-ccg uugaac]--- ---------- 5461 -------cuc uuu-c-g--- UGAU-U-GGG AUAGGGAAU( UGUAAUUA)U UUCCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gaga-u cc-ucgga-u ugg-ccgg-g ucg-cgguuc g--------- ---------- 5701 -------(cc ggca--)--- ---------- ---------- ---------- -cga-uccu- 5761 gcg----cug -aaaa-|gac -gaucaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC---- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS S.intermed 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D14365 LOCUS SUS18SI 1669 bp ds-DNA INV 19-APR-1994 DEFINITION Strongyrocentrotus intermedius 18S rDNA gene for 18S rRNA. ACCESSION D14365 KEYWORDS 18S rRNA. SOURCE Strongyrocentrotus intermedius DNA. ORGANISM Strongyrocentrotus intermedius Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa; Echinoidea; Echinacea; Echinoida; Strongylocentrotidae. REFERENCE 1 (bases 1 to 1669) AUTHORS Wada,H. and Satoh,N. TITLE Details of the volutionary history from invertebrates to vertebrates, as deduced from the sequences of 18S rDNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1801-1804 (1994) STANDARD full automatic COMMENT Submitted (03-FEB-1993) to DDBJ by: Hiroshi Wada Department of Zoology Faculty of Science Kyoto University Kitashirakawa-Oiwakecho Sakyo-ku, Kyoto 606-01 Japan Phone: 075-753-4081 Fax: 075-751-614. NCBI gi: 473551 FEATURES Location/Qualifiers source 1..1669 /organism="Strongyrocentrotus intermedius" /sequenced_mol="DNA" BASE COUNT 402 a 403 c 478 g 386 t ORIGIN BASE COUNT 402 a 403 c 478 g 386 t 4234 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nn nnnnn----n ---------- nnnnucgacg aa-]------ 181 -----|---A CU|G-CGGGa UGGCU-CAUU AAAU-cagu- uau-gguu-- ----cauugg 241 aucg<----- ---------- ---------- ---------- ---------- -agucccccc 301 g>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggauccuuc -ga|augucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UUAUGC G)CCU-ACCA U-|GGUCG-U CAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuugggc ccagg-cugc -gguc--c-g c-cguguacg ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---uguacug caguccuggc cuuccucucg guuu-ucgcc c--------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --ggugcccu 2161 u----aauu- ---------- ---------- -gagugccag gaga------ ---------- 2221 ---ggccgga ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUGGA 2461 GUGUUCAA-A G--CAGGCCU C--------- ---------- ---------- ---------- 2521 ----gcGCCU GAACAG-CA- GAGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -GC-GUUGGU -UU-UC---- ------ggaa ---cucg-AG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cuga ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGUG-UG -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-AAG- A-CGAACG-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --acgau-cc gcc-ggc-g- -------uua cucccauga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-gg-cgg-g -c-agucu-- ---------- ----aaGG(- 3661 GAAA-)CCa- -aAGUC-uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cagu-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CUU-GC UAAAUAGuug c---gccacc cgc----cgc -gu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc gggu---c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGU-G -G-C(----- 5041 ---guuua)G CCAG---GCG AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GC-GC A-CGCGCGCU ACACU--G-G CGGaa----- ---------- 5281 ---(------ ----)[ucag cggguacac- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -ugcccu-ug gcc(ggaa-) ggucu----g gguaau-ccg cugaac]--- ---------- 5461 -------cuc cuc-c-g--- UGAU-G-GGG AUAGGGAGU( UGCAAUUA)U CUCCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gaga-u cc-ucgga-u cgu-c----- --g-gcgucg gacggc---- ---------- 5701 -------(uu u-----)--- ---------- ---------- -gccgc--cu cgcu-cgca- 5761 ugu----acg -agaa-|gac -gaucaaann nn-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS S.purpurat 5903 bp RNA RNA 11-JAN-191 DEFINITION Ophiopholis aculeata or Strongylocentrotus purpuratus. ACCESSION No information KEYWORDS No information. SOURCE Ophiopholis aculeata or Strongylocentrotus purpuratus. ORGANISM Ophiopholis aculeata or Strongylocentrotus purpuratus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L28055 LOCUS OPPRGE 1796 bp ds-DNA INV 07-JUL-1994 DEFINITION Ophiopholis aculeata 18S ribosomal DNA (18S rDNA). ACCESSION L28055 KEYWORDS 18S rRNA; 18S ribosomal RNA; PCR amplified. SOURCE Ophiopholis aculeta DNA. ORGANISM Ophiopholis aculeta Eukaryota; Animalia; Eumetazoa; Echinodermata; Asterozoa; Stelleroidea; Ophiuroidea; Ophiurida. REFERENCE 1 (bases 1 to 1796) AUTHORS Turbeville,J.M., Schulz,J.R. and Raff,R.A. TITLE Deuterostome phylogeny and the sister group of the chordates: Evidence from molecules and morphology JOURNAL Mol. Biol. Evol 11, 648-655 (1994) STANDARD full automatic COMMENT NCBI gi: 508546 FEATURES Location/Qualifiers source 1..1796 /organism="Ophiopholis aculeta" /sequenced_mol="DNA" BASE COUNT 438 a 430 c 503 g 425 t ORIGIN BASE COUNT 438 a 430 c 503 g 425 t 4107 others ORIGIN 1 |~~~~~~~~~ ~~~~~~ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac aagc-----u ---------- cgucucgacg aa-]------ 181 -----|---A CU|G-CGGA- UGGCu-CAUU AAAU-cagu- uau-gguu-- ----cauugg 241 aucg<----- ---------- ---------- ---------- ---------- -agucccccc 301 g>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggauccuuc -ga|augucu gc|-CCUA-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UUAUGC G)CCU-ACCA U-|GGUCG-U CAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|UAGAGG G-AGCU(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa caauacagg- -acuc(---- ---uuuc)ga ggccc-ugua a-uugGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuugggc ccagg-ccug cgguc--c-g c-cgugaggc g--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---uguacug caguccuggc cuuccucucg guuu-ucgcc c--------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --ggugcccu 2161 u---aauug- ---------- ---------- -augugccag gaga------ ---------- 2221 ---ggccgga ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUGGA 2461 GUGUUCAA-A G--CAGCCUC ---------- ---------- ---------- ---------- 2521 ----gcGCCU GAACAG-CA- GAGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -GC-GUUGGU -UU-UC---- ------ggaa ---cucg-AG G-UAAgUGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cuga ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGUGGUG -AGAG(GU-G AAA---)UUC U-UGG--U-C 3061 GCCGC-AG-- --CGACCG-A C-GC(-GAAA )--GC|A--a UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG --uUUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --acgau-cc gcc-ggc-g- -------uua cucccauga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-gg-cg--g -c-agucu-- ---------- ----aaGG(- 3661 GAAA-)CCa- -aAGUC-uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cagu-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CUU-GC UAAAUAGuug c---gccacc --------cc gc-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gg ugcgcguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGU-G -G-C(----- 5041 ---guuua)g ---------A GA-U-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CGCGCCGU ACACU--G-g cggaa----- ---------- 5281 ---(------ ---u)[ccag cggguacacu ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --gcccu-ug gcc(ggaa-) ggucu----g gguaau-ccg cugaac]--- ---------- 5461 -------cuc cuc-c-g--- UGAU-G-GGG AUAGGGAGU( UGCAAUUA)U CUCCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gaga-u cc-ucgga-u cgu---cg-g cgucggg--- ---------- ---------- 5701 -------(cu ugcgc-)--- ---------- ---------- -------cuc gcu--cgca- 5761 ugu----acg -agaa-|gac -gaucaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC---- 5881 ---------- -------~|| ||| // LOCUS S.japonicu 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D14364 LOCUS STJ18SH 1730 bp ds-DNA INV 19-APR-1994 DEFINITION Stichopus japonicus 18S rDNA gene for 18S rRNA. ACCESSION D14364 KEYWORDS 18S rRNA. SOURCE Stichopus japonicus DNA. ORGANISM Stichopus japonicus Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa; Holothuroidea; Aspidochirotacea; Aspidochirotida; Stichopodidae. REFERENCE 1 (bases 1 to 1730) AUTHORS Wada,H. and Satoh,N. TITLE Details of the volutionary history from invertebrates to vertebrates, as deduced from the sequences of 18S rDNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 1801-1804 (1994) STANDARD full automatic COMMENT Submitted (03-FEB-1993) to DDBJ by: Hiroshi Wada Department of Zoology Faculty of Science Kyoto University Kitashirakawa-Oiwakecho Sakyo-ku, Kyoto 606-01 Japan Phone: 075-753-4081 Fax: 075-751-614. NCBI gi: 473550 FEATURES Location/Qualifiers source 1..1730 /organism="Stichopus japonicus" /sequenced_mol="DNA" BASE COUNT 419 a 421 c 489 g 401 t ORIGIN BASE COUNT 419 a 421 c 489 g 401 t 4173 others ORIGIN 1 |~~~~~~~~~ ~~~~~~nnnn nnn(nnn)nn nn|nnnnnn- n-nnn--nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nn nnnna----a ---------- cauacaagag aa-]------ 181 -----|---A CU|G-CAGAu CGGCU-CAUU AGAU-cagu- uau-gguu-- ----uauugg 241 agaa<----- ---------- ---------- ---------- ---------- --agucuuau 301 a>CCAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- gcu-cccuuc aaa|aagucu gc|--UCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-UUAUGC G)-CU-AUCA U-|GGUUG-U GAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa cgauacagg- -ccuc(---- ---uucg)GA GGCCC-UGUG A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 C-AGCGUA|U AUUAA--AUU UGCUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucuggc cgggg-cggg cgguc--c-g u--g--agcg gcacugcc-- ---------- 1801 ---------- -cgu-cuccc c-uuc-uccc cgucaa---- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ----acgagu 1981 cgugggagau uuuucccggc cagugauucg guuggucguc ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --ggugcucu 2161 u----aacu- ---------- ---------- -gagugccgu gcga------ ---------- 2221 ---gacugga ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AGA A--AAUUGAA 2461 GUGUUCAA-A G--CAG-CCA AA-------- ---------- ---------- ---------- 2521 ----guGCCC GAACAG-CU- CAGCAUGGAA -------|UA -GUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UC-GUUGGU -CU-UG---- ------agau ---ccug-AG G-UAA-UGAU CAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|c-gu ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-UG -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGCCCG-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUCGGAGGA- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC CG--ACC-AU AAACGAUACC GAC|UC|--- 3421 --guaau-uc gcc-ggc-g- -------uuc cucccauga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-g c-gg-cgg-g -c-aacuc-- ---------- ----ucCG(- 3661 GAAAA)CCa- -aAGUC-uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGcuUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGGG-AAA CCUACCCGGC CC[gg--aca 4081 cagu-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-UG|- ---------- 4321 ------(--- --)[CUU-GC UAAAUAGucc g---gccacc -------cgu cgu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gg ugagcgcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Aau-g -g-c(----- 5041 ---uuuca)g ccau---acg agaU-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GC-GC A-CGCGCGCU ACACU--g-g cgcaa----- ---------- 5281 ---(------ ----)[gcag cggguacauu ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucccu-cg gcc(gaaa-) ggucc----g gguaau-ccg cugaga]--- ---------- 5461 -------cuu cuc-c-g--- UGCU-G-GGG AUAGGGACU( UGUAAUUG)U GUCCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA AA-CGC-GAG (-UCAUCAG- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--cg aa-ugacuu- 5641 agu-gagg-c ca-ucgga-u cga-ccgu-c ugg-cacccc cggc------ ---------- 5701 -------(uu cg----)--- ---------- ---------- ---gccgguu gucg-aggc- 5761 gug----acg -agaa-|gac -cgucaaacu un-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnn---- 5881 --nnnn---- -------~|| ||| // LOCUS (8)-Protos 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (9)-Arthro 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (10)-Trach 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (11)-Hexap 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (12)-Insec 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Meloe.pros 5903 bp RNA RNA 11-JAN-191 DEFINITION Meloe proscarabaeus. ACCESSION No information KEYWORDS No information. SOURCE Meloe proscarabaeus. ORGANISM Meloe proscarabaeus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77786 ID MP18SRRNA standard; DNA; INV; 1934 BP. XX AC X77786; XX DT 21-APR-1994 (Rel. 39, Created) DT 21-APR-1994 (Rel. 39, Last updated, Version 1) XX DE M.proscarabaeus 18 rRNA gene XX KW 18S ribosomal RNA; 18S rRNA gene. XX OS Meloe proscarabaeus OC Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta. XX RN [1] RA Chalwatzis N., Baur A., Stetzer E., Kinzelbach R., Zimmermann F.K.; RT "The small subunit ribosomal RNA from Xenos vesparum RT (Insecta/Strepsiptera) is the longest and most A+T rich 18S rRNA RT ever known"; RL Unpublished. XX RN [2] RP 1-1934 RA Chalwatzis N.; RT ; RL Submitted (27-JAN-1994) to the EMBL/GenBank/DDBJ databases. RL N. Chalwatzis, Technische Hochschule Darmstadt, Institut RL Mikrobiologie, Schnittspahnstr. 10, 64 287 Darmstadt, FRG XX RN [3] RP 1-1934 RA Chalwatzis N., Baur A., Stetzer E., Kinzelbach R., Zimmerman K.; RT "The small subunit ribosomal RNA of Xenos vesparum RT (Insecta/Strepsiptera) is the longest and most A+T rich eukaryotic RT 18S rRNA ever known"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..1934 FT /organism="Meloe proscarabaeus" FT /dev_stage="larvae" FT /tissue_type="whole organism" FT /clone="pNC06Me18S" FT primer_bind 1..22 FT /note="18SV0000" FT /gene="18S rRNA" FT primer_bind 1907..1934 FT /gene="18S rRNA" FT /note="18SR1900" FT rRNA 1..1934 FT /gene="18S rRNA" FT /product="18S ribosomal RNA" XX SQ Sequence 1934 BP; 503 A; 414 C; 518 G; 499 T; 0 other; BASE COUNT 503 a 414 c 518 g 499 t 3969 others ORIGIN 1 |--------- -----UACCU GGU(GGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 acaagcc--- -------a-- ---------- ---------- aauuaaggug aa-]------ 181 -----|---A CC|G-CGAA- AGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- uacccacaau 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUUUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AG-C AA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUCG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuug---- --ugu-cuca u-gccg-cug guu-caucg- -(uucg---- ---------- 1801 ---------- )--cggu-gu a-aac-uggc gu-gac--au g-ggacg--- -----uccug 1861 ccgguggguu uag-cuc--- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- -----cuaag ggggcggccc -uaua-uaau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc u-gcggcguu gcuc(uuaau 2161 c----)gag- ---------- ---------- -uguc-ga-g -gug------ ---------- 2221 ---ggccggc uc-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------aUUU ACUUUG-AAC A--AAUUAAA 2461 GUGCUUAA-A G--CAGGCUa ---------- ---------- ---------- ---------a 2521 aauuuUGCCU GAAUA--ugu GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-a----- -------gga -acacG-A-G G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGA ---------- 3001 --UGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGAACA-U AAGC(-GAAA )--GC|A--- UUUGCC-AA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AGC|CA|--- 3421 --gcgau-cc gcc-g-augu u---(---cc uccgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -g-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGCU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cag-aca 4081 cugg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAauagacg cauauuucga caucuuaaag gccc-gucgg 4381 uauuauucag g(uuaauag) ccuguuuaua cuguac--gu gguuuuuacu -gucggcgua 4441 uuaauaauuc u--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-ggc-g -g-c(----- 5041 --uucua-)g ccgc---aca AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucag cguguguuuu ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---cccu--g ucc(gaga-) ggacc----g gguaacccgu -cgaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGAAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-AAG (-UCAUAAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c ugg-uacgcg g-u-ggcgu- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------gcgu uacc-gaug- 5761 uug----cug -ggaa-|gau -gaccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Dro.melano 5903 bp RNA RNA 11-JAN-191 DEFINITION Drosophila melanogaster. ACCESSION No information KEYWORDS No information. SOURCE Drosophila melanogaster. ORGANISM Drosophila melanogaster. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M21017 LOCUS M21017 7232 bp ds-DNA UNA 15-DEC-1988 DEFINITION Figure 1. DNA sequence of the rRNA genes and IGS spacers of Drosophila melanogaster. ACCESSION M21017 REFERENCE 1 (bases 1 to 7232) AUTHORS Tautz,D., Hancock,J.M., Webb,D.A., Tautz,C. and Dover,G.A. TITLE Complete Sequences of the rRNA Genes of Drosophila melanogaster JOURNAL Mol Biol Evol 5, 366-376 (1988) STANDARD unannotated staff_entry COMMENT Draft entry and computer readable copy of sequence [1] kindly provided by J.M.Hancock (10-05-88). BASE COUNT 2295 a 1203 c 1541 g 2193 t ORIGIN BASE COUNT 563 a 375 c 473 g 584 t 3908 others ORIGIN 1 |--------- -----AUUCU GGU(UGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 acacacg--- -------a-- ---------- ---------- auuaaaagug aa-]------ 181 -----|---A CC|G-CAAA- AGGCU-CAUU AUAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uuaacagu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucuuuc -aa|augucu gc|--CCU-A UCA--ACUUU U-GAUGGUA- 1141 GU(-AUCUAG G)ACU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -ACUCCC-A( ---gcu--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- -auaucc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C AA-GGACC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAACG UUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aacuug---- --ugc-uuca u-acgg-gua --g-uacaa- --cuuacaa- ---------- 1801 ---------) uugugguuag uacua-uacc u----uu-au guaugua--- -agcguauua 1861 ccgguggagu ucuuauaugu gauuaaauac uug------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------u auuuuuucau auguuccucc uauuuaaaaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc u-gcauuagu gcuc(uuaaa 2161 c----)gag- ---------- ---------- -uguu-au-u -gug------ ---------- 2221 ---ggccggu ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UAUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-A G--CAGGCUu ---------- ---------- ---------- ---------- 2521 -cAAAUGCCU GAAUAu-ucu GUGCAUGGGA -------|UA -AUGAAA-UA -AGAcCucug 2581 uuCU------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-GCUU 2821 -UC-AUUGGU -UU-UC---- ------aga- -ucaaG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAG|CAGU ---------- 3001 -uUGGGGGCA UU|--AGUAU UACGACG-CG -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGU-AAG- A-CUAACU-U AAGC(-GAAA )--GC|A--- UUUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AGC|UA|--- 3421 --gcaau-ug ggu-g-uagc u---(---ac uuuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-uc-uca-g -u-cgcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGCUuuuu gGGC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[-ga-aca 4081 uaag-ugugu aagacaga(u ugauagc)-- --ucuuucuc gaau-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUCG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCA-AA|- ---------- 4321 ------(--- --)[UAU-AU UAAauagaua uc--uucagg auuauggugc ugaa-gcuua 4381 ugua--gccu uc---auuca uguuggcagu aaaaugcuua uuguguuuga -auguguuua 4441 uguaagugga gccguaccug uugguuuguc ccauuauaag gacacuagcu ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AAAUG]---- --|------- ---------- GACA-Aau-u -g-c(----- 5041 --gucua-)g caau--aaug AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCUGC A-CGCGCGCU ACAAU--G-A AAGUA----- ---------- 5281 ---------- -----[ucaa cguguauu-- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uccua--g acc(gaga-) ggucc----g gguaaaccgc -ugaac]--- ---------- 5461 -------CAC UUU-C-a--- UGCU-U-GGG AUUGUGAAC( UGAAACUG)U UCACGAUG-A 5521 ACUUGG-AAU U--CCCAGUA AG-UGU-GAG (-UCAUUAA- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UUAUuu- 5641 agu-gagg-u cu-ccgga-c gug-auca-c ugu-gacgc- ---------- ---------- 5701 -------(cu ugc---)--- ---------- ---------- ------gugu uacg-guug- 5761 uuu----cgc -aaaa-|guu -gaccgaacu ug-AUU-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Aed.albopi 5903 bp RNA RNA 11-JAN-191 DEFINITION Aedes albopictus. ACCESSION No information KEYWORDS No information. SOURCE Aedes albopictus. ORGANISM Aedes albopictus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X57172 LOCUS MSQ18SRRNA 1950 bp ds-DNA INV 19-SEP-1991 DEFINITION Aedes albopictus gene for 18s rRNA ACCESSION X57172 KEYWORDS 18S ribosomal RNA. SOURCE Aedes albopictus DNA. ORGANISM Aedes albopictus Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae. REFERENCE 1 (bases 1 to 1950) AUTHORS Baldridge,G.D. and Fallon,A.M. TITLE Nucleotide sequence of a mosquito 18S ribosomal RNA gene JOURNAL Biochim. Biophys. Acta 1089, 396-400 (1991) STANDARD full automatic COMMENT *source: stage=larvae; *source: cell_line=ATC-15; *source: clone_library=EMBL3; *source: clone=E5; *source: chromosome=3; From EMBL entry AA18SRRNA; dated 05-SEP-1991. FEATURES Location/Qualifiers rRNA 1..1950 /product="18S rRNA" BASE COUNT 545 a 399 c 495 g 511 t ORIGIN BASE COUNT 545 a 399 c 495 g 511 t 3953 others ORIGIN 1 |--------- -----AUUCU GGU(UGA)UC CU|ACCAGU- A-AU-A-UAC --GCUUGUCU 61 CAAA|-GGUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 acaaaca--- -------g-- ---------- ---------- auuuaaugug aa-]------ 181 -----|---A CC|G-CAUA- AGGCU-CAGU AUAA-cagc- uau-aauu-- ----uacaag 241 auca<----- ---------- ---------- ---------- ---------- uuuaacuagu 301 u>ACUUGG-A UAACUGUGG( -A-AAAU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucuuuc -aa|auaucu gc|--CCU-A UCA--ACUAU U-GAUGGUA- 1141 GU(-AUAGAG G)ACU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAAG- -ACUC(---- -uuuuau)GA CGUCU-UAUA A-UUGGAAU- 1501 ------GAGU ----UGAGCA -UAAA--UCC UUC---AA-C AA-GGAUC-- ----->AAGU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAC 1621 U-AGCGUA|U AUUAA--AAU UGUUG-CGG| UUA--AAACG UUCGAAGUUU |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 auucuu---- --guc--caa c-acgg-gug --c-uacuc- -(cuuuauga ---------- 1801 ---------- )--uggc-ag u-aggucacu g-gauu--gu u-gcgac--- --uauaagac 1861 ugggugcgc- --ccgucggc cucgcggucg gcg------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --cggucgua -gugu----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- g-gcgcugau gccu(uucau 2161 c----)ggg- ---------- ---------- -ugca-gugu uucc------ ---------- 2221 ---gcaagcc cagcugc--- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UAUU ACCUUG-AAC A--AAUUAGA 2461 GUGCUCUA-A G--CAGGCUa ---------- ---------- ---------- ---------u 2521 ccuacggcc- gagaau-aac uUGCAUGGAA -------|UA -AUGGAA-UA -UGAcCucgg 2581 ucuua----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-auaU 2821 -UC-AUUGGU -UU-GU---- --aaucaga- -ucaaG-AG- G-UAA-UGAU UAACA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAG|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UACGGCG-CG -AGAG(GU-G AAA---)UUC G-UAGA-C-C 3061 GUCGU-AAG- A-CUAACU-A AAGC(-GAAA )--CG|A--- UUUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---CUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGA- UCGA-GGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACUAUGCC AAU|UA|--- 3421 --gcaau-ug gga-g-acgc u---(---ac auuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggu-g c-uc-uca-g -u-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAAUU---- aGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 UUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cga-acu 4081 uauu-gaggu aagacaga(u uaauagc)-- --ucuuucuc aaaa-uuaag gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUCG- U|GGA(-AUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGUG ACUCA-AU|- ---------- 4321 ------(--- --)[CAA-AU UAAauagaac gc--uaucag cagucagaug uuug-auacc 4381 gacg--guuc gg---gcaac ggucgcucgc gcgucgcgcu cggccggcgg -uguagugug 4441 accugauaau acgucaaccc aucgugguug acuucu---- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------GCUU AAUAG]---- --|------- ---------- GACA-Auu-u -g-u(----- 5041 --guuca-)g caaa---aug AGAU-UGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CCG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACAAU--G-U GCGCA----- ---------- 5281 ---------- -----[gcaa cgcgua---- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uccuu--g ccc(gaaa-) gggcc----g gg-aaaucgc -uuaaa]--- ---------- 5461 -------UGC GCA-U-u--- uagu------ ----CGGGA( UGAAA-UG)G UCCAUAUG-A 5521 ACCUGG-AAU U--CC-AGUA AG-UGC-UGG (-UCAUUAG- )CUAGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU---G GA-UUAUuu- 5641 agu-gagg-u cuuugaa--g gug-aaca-u uug-cuaguc c--------- ---------- 5701 -------(cu cg----)--- ---------- ---ggauuac auuugaaucg cuga-a--g- 5761 u-u----gac -cgaa-|cuu -gaccgaacu ug-AUG-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Pol.dominu 5903 bp RNA RNA 11-JAN-191 DEFINITION Polistes dominulus. ACCESSION No information KEYWORDS No information. SOURCE Polistes dominulus. ORGANISM Polistes dominulus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77785 ID PD18RRNA standard; DNA; INV; 1919 BP. XX AC X77785; XX DT 21-APR-1994 (Rel. 39, Created) DT 21-APR-1994 (Rel. 39, Last updated, Version 1) XX DE P.dominulus 18 rRNA gene XX KW 18S ribosomal RNA; 18S rRNA gene. XX OS Polistes dominulus OC Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta. XX RN [1] RA Chalwatzis N., Baur A., Stetzer E., Kinzelbach R., Zimmermann F.K.; RT "The small subunit ribosomal RNA from Xenos vesparum RT (Insecta/Strepsiptera) is the longest and most A+T rich 18S rRNA RT ever known"; RL Unpublished. XX RN [2] RA Chalwatzis N., Baur A., Kinzelbach R., Zimmermann F.K.; RT "Xenos vesparum (Insecta/Strepsiptera) has the longest and most RT A+T rich small subunit rRNA ever known"; RL Unpublished. XX RN [3] RP 1-1919 RA Chalwatzis N.; RT ; RL Submitted (27-JAN-1994) to the EMBL/GenBank/DDBJ databases. RL N. Chalwatzis, Technische Hochschule Darmstadt, Institut RL Mikrobiologie, Schnittspahnstr. 10, 64 287 Darmstadt, FRG XX RN [4] RP 1-1919 RA Chalwatzis N., Baur A., Stetzer E., Kinzelbach R., Zimmerman K.; RT "The small subunit ribosomal RNA of Xenos vesparum RT (Insecta/Strepsiptera) is the longest and most A+T rich eukaryotic RT 18S rRNA ever known"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..1919 FT /organism="Polistes dominulus" FT /dev_stage="adult" FT /tissue_type="muscle" FT /clone="pNC05Po18s" FT primer_bind 1..22 FT /gene="18S rRNA" FT /note="18SV0000" FT primer_bind 1892..1919 FT /gene="18S rRNA" FT /note="18SR1900" FT rRNA 1..1919 FT /gene="18S rRNA" FT /product="18S ribosomal RNA" XX SQ Sequence 1919 BP; 487 A; 434 C; 513 G; 485 T; 0 other; BASE COUNT 487 a 434 c 513 g 485 t 3984 others ORIGIN 1 |--------- -----UACCU GGU(GGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 gcaugcc--- -------g-- ---------- ---------- agcuaaggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ucuuag 241 aucg<----- ---------- ---------- ---------- ---------- uacccacauu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -aaaucuuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUCUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C AA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aaucug---- --ugu-uuca c-acug-uug guu-caccg- -(cucg---- ---------- 1801 ---------- )--cggu-gu u-uac-uggc a-ugau--gu g-ggacg--- -----uccua 1861 ccggugggcu uag-cuc--- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- -------uuc ggggcggucc aacua-auau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc c-aucgcggu gcuc(uucau 2161 u----)gag- ---------- ---------- -uguc-ga-g -aug------ ---------- 2221 ---ggccggu ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-A G--CAGGCUa ---------- ---------- ---------- ---------- 2521 -gccuCGCCU GAAUAc-ugu GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa -cuccG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --UGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGGACA-G AAGC(-GAAA )--GC|A--- UUUGCC-AA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AGC|UA|--- 3421 --gcgau-cc gcc-g-aagu u---(---cc uccgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ga-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGCU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAauaggcg ua--uauuau gguaucacga aggc-ccucg 4381 gc-------- -----uucg- ---------- ---gucgagu gguuuuuacu -accaacgua 4441 ccaacaaauc u--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Ggc-g -g-c(----- 5041 --uuuua-)g ccgc---acg AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucaa cguguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--g gcc(gaaa-) ggccc----g gguaacccgc -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGCAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c ugg-ugcg-c ggc-agugc- ---------- ---------- 5701 -------(cu cg----)--- ---------- ---------- ------gcac ugcc-gaug- 5761 uug----ccg -ggaa-|gau -gaccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Bit.chloro 5903 bp RNA RNA 11-JAN-191 DEFINITION Bittacus chlorostigmus. ACCESSION No information KEYWORDS No information. SOURCE Bittacus chlorostigmus. ORGANISM Bittacus chlorostigmus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10184 LOCUS BTCRG18S 1080 bp ds-DNA INV 07-MAY-1993 DEFINITION Bittacus chlorostigmus 18S ribosomal RNA gene. ACCESSION L10184 KEYWORDS 18S ribosomal RNA. SOURCE Bittacus chlorostigmus DNA. ORGANISM Bittacus chlorostigmus Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Mecoptera; Eumecoptera; Bittacidae. REFERENCE 1 (bases 1 to 1080) AUTHORS Carmean,D., Kimsey,L.S. and Berbee,M.L. TITLE 18S rDNA sequences and the holometabolous insects JOURNAL Mol. Phylog. Evol. 1, 270-278 (1992) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..>1080 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1080 /organism="Bittacus chlorostigmus" /sequenced_mol="DNA" BASE COUNT 286 a 232 c 275 g 285 t 2 others ORIGIN BASE COUNT 286 a 232 c 275 g 285 t 4825 others ORIGIN 1 |--------- -nnnnnnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |--------- ----[----- 121 nnnnnnn--- -------n-- ---------- ---------- nnnnnnnnnn nn-]------ 181 -----|---n nn|n-nnnn- UGGCU-CAUU ACAU-canu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- uacccacauu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GU(-UUCUGC G)ACU-ACCA U-|GGUUG-U UAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuug---- --ugu-ucca c-acu--guu g-guucaccg (cucg----- ---------- 1801 ---------- -)cg-uuuu- --aac-uggc au-gucu-gu g-gaacg--- -----uccua 1861 ccgguggugu c--guuuacc ccaguugagg uaaaacuuuu cuggggga-- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --cggcccaa auaac-aaau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc u-aucacggu gcuc(uuaaa 2161 c----)gag- ---------- ---------- -uguc-gg-g -aug------ ---------- 2221 ---ggccggu ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-A G--CAGGCUu ---------- ---------- ---------- ---------- 2521 auauuUGCCU GAAUAu-uau GUGCAUGGAA -------|UA -AUAGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa cccccG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAC ---------- 3001 --UGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGGACA-G AAGC(-GAAA )--GC|A--- UUUGCC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GUG ---UUUUCAU -CAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AGC|UA|--- 3421 --gcgau-cc gcc-g-aagu u---(---cc ucgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -c-agc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~--~~~~~~ --~~~~~~~~ 3721 ~~~~~~~~~~ -~~~~~~~~~ ~~~~|~~-~~ ~~~-~~~~~~ ~~~~~~~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4141 ---------- -]~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 4261 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~------ ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ ~-~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~~ ~~~~~~~~-~ ~~~-~~~~-~ ~~~~~~~~~~ ~~~~~~~~~- ---------- 5701 -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~---~~~ -~~~~-|~~~ ~~~~~~~~~~ ~~-~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chr.plorab 5903 bp RNA RNA 11-JAN-191 DEFINITION Chrysoperla plorabunda. ACCESSION No information KEYWORDS No information. SOURCE Chrysoperla plorabunda. ORGANISM Chrysoperla plorabunda. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10183 LOCUS CHXRG18S 1189 bp ds-DNA INV 07-MAY-1993 DEFINITION Chrysoperla plorabunda 18S ribosomal RNA gene. ACCESSION L10183 KEYWORDS 18S ribosomal RNA. SOURCE Chrysoperla plorabunda DNA. ORGANISM Chrysoperla plorabunda Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Neuroptera; Planipennia; Hemerobiiformia; Hemerobioidea; Chrysopidae. REFERENCE 1 (bases 1 to 1189) AUTHORS Carmean,D., Kimsey,L.S. and Berbee,M.L. TITLE 18S rDNA sequences and the holometabolous insects JOURNAL Mol. Phylog. Evol. 1, 270-278 (1992) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..>1189 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1189 /organism="Chrysoperla plorabunda" /sequenced_mol="DNA" BASE COUNT 324 a 234 c 296 g 331 t 4 others ORIGIN BASE COUNT 324 a 234 c 296 g 331 t 4718 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn n-nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnCU-CA GU|------- |--------- ----[----- 121 acaagcc--- -------a-- ---------- ---------- aauuaaggug aa-]------ 181 -----|-acn cg|c-nGAA- AGGCU-CAUU AUAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- uacccacauu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUCUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GnuAA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUCG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aaucug---- --ugu-ccua c-acu--guu g-guucaaug (cucg----- ---------- 1801 ---------- -)ca-uuguu u-aac-uagc au-guuaugu g-ggacg--- -----uccua 1861 ccggugg-gu gguacagauu auguauaaag uauauuuuag uguuauuauu uauuuaaugc 1921 auuauauaua uuuuuauuau guaauuuguc guaaguguuu aa-------- ---------- 1981 ---------- ---------- ------ccgu uaagagcggu ggcagccccc aauug-caau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc c-gucgcggu gcuc(uuaau 2161 u----)gag- ---------- ---------- -uguc-ga-g -gug------ ---------- 2221 ---ggccgnu ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-G G--CAGGCUc ---------- ---------- ---------- ---------a 2521 aauuuUGCCU GAAUAu-ugu GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa --cuccGAG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -CGGA|CAGA ---------- 3001 --UGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGGACA-G AAGC(-GAAA )--GC|A--- UUUGCC-AA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUGAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AGC|UA|--- 3421 --gcgau-cc gcc-g-aagu u---(---cc ucgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -c-agc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~--~~~~~~ --~~~~~~~~ 3721 ~~~~~~~~~~ -~~~~~~~~~ ~~~~|~~-~~ ~~~-~~~~~~ ~~~~~~~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4141 ---------- -]~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 4261 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~------ ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ ~-~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- 5701 -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~---~~~ -~~~~~|~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Myrmele.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Myrmeleon spp.. ACCESSION No information KEYWORDS No information. SOURCE Myrmeleon spp. ORGANISM Myrmeleon spp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10182 LOCUS MYERR18S 1379 bp ss-rRNA RNA 08-MAY-1993 DEFINITION Myrmeleon sp. 18S ribosomal RNA. ACCESSION L10182 KEYWORDS 18S ribosomal RNA. SOURCE Myrmeleon sp. rRNA. ORGANISM Myrmeleon sp. Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Neuroptera; Planipennia; Myrmaleontiformia; Myrmleontoidea; Myrmeleontidae. REFERENCE 1 (bases 1 to 1379) AUTHORS Carmean,D., Kimsey,L.S. and Berbee,M.L. TITLE 18S rDNA sequences and the holometabolous insects JOURNAL Mol. Phylog. Evol. 1, 270-278 (1992) STANDARD full automatic FEATURES Location/Qualifiers misc_feature <737..>988 /note="A-T rich insertion or expansion region: approx. 260 bp., with 8C's and 21 G's" rRNA 1..>1379 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1379 /organism="Myrmeleon sp." /sequenced_mol="rRNA" BASE COUNT 397 a 222 c 294 g 433 t 33 others ORIGIN BASE COUNT 397 a 222 c 294 g 433 t 4557 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn n-nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnCU-CA GU|------- |--------- ----[----- 121 acaagcc--- -------a-- ---------- ---------- uauuaaggug aa-]------ 181 -----|-acn cn|n-nGAA- AGGCU-CAUU AUAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- uacauacauu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucuuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUCUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GnuAA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUCG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuug---- --ugu-ccua c-acu--guc g-guucaccg (cucg----- ---------- 1801 ---------- -)cg--unuu u-aac-uggc au-guuuugu g-ggacg--- -----uccua 1861 ccggugguga gguauaaauu auauauugua caauauaguu auaaauaaaa auuauacacu 1921 uguauuuuua uuuaaauuuu uauuuuaugg guaanuaaun aaaauguuau uuuguuuuug 1981 uguauaauau uauauuuauu uuuuunaauu uauauguaua uauauaaaua uuaua-nuuu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gn n-uuuuuuuu acnuugnaaa 2161 a----uuna- ---------- ---------- -aaguauacn uang------ ---------- 2221 ---aaaannn nnnnnnuauu nggngcunca uanuaunccn auuncggugc ucuuaauuga 2281 gugucgagau gggccgguac ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-A G--CAGGCUu ---------- ---------- ---------- -uaaaauuua 2521 aauagUgCCU GAAUAu-ugu GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ---ggaaguu uuuccG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -CGGA|CAGA ---------- 3001 --UGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGGACA-G AAGC(-GAAA )--GC|A--- UUUGCC-AA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUGAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AGC|UA|--- 3421 --gcgau-cc gcc-a-aagu u---(---cc uccgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-gg-ugg-g -c-agc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~--~~~~~~ --~~~~~~~~ 3721 ~~~~~~~~~~ -~~~~~~~~~ ~~~~|~~-~~ ~~~-~~~~~~ ~~~~~~~~~~ ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --~-~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 4141 ---------- -]~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 4261 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~--~~~~~ ~---~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~------ ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~-~~-- ~~~~-~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~-~~~ ~--~~~~~~~ ~~-~~~~~~~ ~-~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~- 5581 ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- 5701 -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~---~~~ -~~~~~|~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Xen.vespar 5903 bp RNA RNA 11-JAN-191 DEFINITION Xenos vesparum. ACCESSION No information KEYWORDS No information. SOURCE Xenos vesparum. ORGANISM Xenos vesparum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77784 ID XV18RRNA standard; DNA; INV; 3316 BP. XX AC X77784; XX DT 21-APR-1994 (Rel. 39, Created) DT 21-APR-1994 (Rel. 39, Last updated, Version 2) XX DE X.vesparum 18 rRNA gene XX KW 18S ribosomal RNA; 18S rRNA gene. XX OS Xenos vesparum OC Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; OC Pterygota; Strepsiptera. XX RN [1] RP 1-3316 RA Chalwatzis N.; RT ; RL Submitted (27-JAN-1994) to the EMBL/GenBank/DDBJ databases. RL N. Chalwatzis, Technische Hochschule Darmstadt, Institut RL Mikrobiologie, Schnittspahnstr. 10, 64 287 Darmstadt, FRG XX RN [2] RP 1-3316 RA Chalwatzis N., Baur A., Stetzer E., Kinzelbach R., Zimmerman K.; RT "The small subunit ribosomal RNA of Xenos vesparum RT (Insecta/Strepsiptera) is the longest and most A+T rich eukaryotic RT 18S rRNA ever known"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..3316 FT /organism="Xenos vesparum" FT /dev_stage="adult" FT /tissue_type="whole organism" FT /clone="pNC03Xv18S, pNC04Xv18S " FT primer_bind 1..22 FT /gene="18S rRNA" FT /note="18SV0000" FT primer_bind 3289..3316 FT /gene="18S rRNA" FT /note="18SR1900" FT rRNA 1..3316 FT /gene="18S rRNA" FT /product="18S ribosomal RNA" XX SQ Sequence 3316 BP; 1182 A; 392 C; 541 G; 1201 T; 0 other; BASE COUNT 1182 a 392 c 541 g 1201 t 2587 others ORIGIN 1 |--------- -----UACCU GGU(GGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|acuagcc |aauaauucu uuu--uuuuu 121 uuuuuuu--- -------uaa aaaaaaagaa ---------- guaaacggug aa-]------ 181 -----|---A CC|G-CGAA- AAGCU-CAUU AAAU-cggc- uuu-gguu-- ----ccuuag 241 auagaaaUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucuuuc -aa|uugucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GA(-UUACAU G)UCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUCCGGA- -ACUC(---- ---uaau)GA GUUUC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC GUU---AA-C GA-GGAGC-- ----->AAAU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAU 1621 U-AGCAUA|U AUUAA--AGU UGUUG-CGU| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aaucug---- --uau-cuca u-caug-uca guc-gcucg- -(uaauuuaa uuua------ 1801 ---------- )-uguaguuu g-auu-ugac auuuugu-au g-agaua--- -----uaaau 1861 acugguggau uuuucaaaau ugaauuuuau uuauuuauau uuugguu--- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------uuu 1981 uuuuuuuuuc aaaaaaaaaa ucaauauaaa uuauauagua auuuucgauu uu-aaaauuc 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------g auauaauaau uuuuaauc-- 2161 --aaaaaag- ---------- ---------- -uuuaucgaa aaua------ ---------- 2221 ---aauguua uuuuuuaaua auaaauuuuu uuuaaaaaau uuuuauaaaa aaauuaacuu 2281 uuuucgauaa cuuuuauuaa auauuaauua uauucuaaua aaauuauuua aacguaauuu 2341 uuauuagacc aguaa----- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------aAUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-A G--CAGGCAa ---------- ---------- ---------- -------auu 2521 uaaauGCCUU GAAUAu-a-a caGCAUGGAA -------|UA -AUAGAA-UA -UGAuCucga 2581 uac----ugu uuaaaaaaga aaauuuuuuu cugauuuuuu uuuuuuuaaa ugauuagaaa 2641 aaaaauaaaa auuggcuuaa agaaauaaau aauuuuacuu aaaaaaaaag auuuuuuuuu 2701 uuuuuuugau uuauacaaaa auaguaaaau uucuuaucgu ugcaaaaauu auauuuaaau 2761 uuuuuuaauu uuuguauuuu uuuuuuuaaa uaaaaaaaaa uaacaaaaac uauuuacaau 2821 -uu-uuuuuu -ua-aaaaaa aauaauuu-- -uguaaauag a-aaauuuaa aaacuuuuuu 2881 gcauccauaa cguuaagaaa auuuuuuuuu uuuguuaaaa aaaaauaauu ucuuuuuuuu 2941 aagaauuuau uucgacagua ugaucgagau aaugaucaau aGAGA|CGGA ---------- 3001 --UGGGGGCA UU|--CGUAC UACGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGU-AAG- A-CGAACU-G AAGC(-GAAA )--GC|G--- UUUGUC-AA| AA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-cc guc-g-augu u---(---ca uucaaauu-) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ga-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUU-uuu aGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 ccga-aagga uugacaga(u uaauagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAcuagacg uu--aaaugu uuugcuagac auau-aaaaa 4381 auu--auaua u---uaauau uuuuuguuua auuuuuuuuu cgauaaaua- augaauuuua 4441 uuugaaaauu uauuuucauu uuuauuuaaa auaaauacgu ugaagauaaa uugcauuuuu 4501 aaaaaaaaaa agagaaaaag aaauuuuugu uuguuuuuuu uuuaagugua guuuauugua 4561 uuuauuugaa uagaaauuga agugaauuuu uuaaauaauu uauuuuaauu auuuaaagau 4621 gaaaauaaaa uaaaaaguau uuuguauaau uuuguuua-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guaagc auuuuauccg auauuuugaa 4801 gcuguucaaa auuuuuuuuu uaaguaauug guuuuuuucu uuuuuuuuua aauuuaguua 4861 uuuuaauuuu gguuuuuuuu gaaaaaaagg aacuaaaauu uuaaugauug aauuuaaaua 4921 aauuaaaaaa aaaaaauuau uuaaaugaaa uuuuggcuuu cgcuaucggc guauuuaaau 4981 accucuUCUU AGAGG]---- --|------- ---------- GACA-ggu-g -g-a(----- 5041 uuuauaa-)g ccac---acg AGAA-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACAAU--G-A AAAAA----- ---------- 5281 ---------- -----[ucaa cguguuua-- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---uuaaaaa 5401 uuuucuu--u ucc(gaua-) ggaau----g gauaaaccgu -ugaaa]--- ---------- 5461 -------AUU UUU-C-G--- UGAU-A-GGA AUCGGGGAU( UGAAAUUA)U UCUCCGUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGU-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c ugu-cacacg uuu-aacau- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------augu uauc-gcug- 5761 uug----aua -gaaa-|gau -gaccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Philaen.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Philaenus spp.. ACCESSION No information KEYWORDS No information. SOURCE Philaenus spp. ORGANISM Philaenus spp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U06480 LOCUS PSU06480 1910 bp DNA INV 08-OCT-1994 DEFINITION Philaenus sp. 18S ribosomal RNA gene, complete sequence. ACCESSION U06480 KEYWORDS . SOURCE meadow spittlebug. ORGANISM Philaenus sp. Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera; Hemipterodia; Hemiptera; Euhemiptera; Cicadomorpha; Cercopoidea; Cercopidae; Philaenus. REFERENCE 1 (bases 1 to 1910) AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera:Sternorrhyncha:Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-89 (1994) STANDARD full automatic REFERENCE 2 (bases 1 to 1910) AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of the Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny, and its eco-evolutionary and cladistic repercussions within the pre-Heteropterodea Hemiptera (s. l.) JOURNAL Pan-Pacific Entomol. (1994) In press STANDARD full automatic REFERENCE 3 (bases 1 to 1910) AUTHORS Campbell,B.C. TITLE Direct Submission JOURNAL Submitted (09-FEB-1994) Bruce C. Campbell, Plant Protection Research, Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, CA 94710-1100, USA STANDARD full automatic COMMENT NCBI gi: 532983 FEATURES Location/Qualifiers source 1..1910 /clone="SPT 18SB-2,3 and 5" /clone_lib="BCC and JDS-C" /organism="Philaenus sp." /tissue_type="thoracic muscle" /dev_stage="adult" rRNA 1..1910 /product="18S ribosomal RNA" primer_bind 1..21 /note="PCR primer; used with primer3" /label=primer1 primer_bind 1100..1120 /note="PCR primer; used with primer4" /label=primer2 primer_bind complement(1100..1120) /note="PCR primer; used with primer1" /label=primer3 primer_bind complement(1893..1910) /note="PCR primer; used with primer2" /label=primer4 BASE COUNT 455 a 459 c 530 g 466 t ORIGIN BASE COUNT 455 a 459 c 530 g 466 t 3993 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUCU-CA GU|------- |--------- ----[----- 121 acgagcc--- -------g-- ---------- ---------- cauuaaggug aa-]------ 181 -----|---A CC|G-CAAA- AGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- uacaaucccu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu ga|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GA(-UUCUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGG--A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GUACC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UUG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucug---- --ugu-ucca c-gcug-ucg guu-cgccg- -(cccgu--- ---------- 1801 ---------- )--cggu-gu u-aac-uggc a-ugccu-gu g-gaacg--- -----uccug 1861 ccggugccgg uccgggcucu cg-gugagcg ua-ggguucg ccu-gaagcu ggucuuguag 1921 uuccggc--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ------cgcc gguca--uau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc c-gccacggu gcuc(uucac 2161 c----)gag- ---------- ---------- -uguc-ga-g -gug------ ---------- 2221 ---ggccggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-A G--CAGGCUu ---------- ---------- ---------- ---------- 2521 gugucCGCCU GAAUAc-ugu GUGCAUGGAA -------|UA -AUGGAA-UA -GGAuCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa --cccG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGG ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGAACC-U AAGC(-GAAA )--GC|A--- UUUGCC-AA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCCUCGU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACGAUGCC AGC|CA|--- 3421 --gcgau-cc gcc-g-acgu u---(---cc uccgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGCU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CGUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAcuaggcg au--uuccgg uacccacaau agug------ 4381 ---------- ---------- ---------- ---------- --------uu -accggcgau 4441 ucaau--uuc u--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Ggc-g -g-c(----- 5041 --uccua-)g ccg----acg AGAC-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAU----- ---------- 5281 ---------- -----[ucag cgugucu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--g gcc(gaca-) ggccc----g gguaacccgu -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGCAAUUU)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c ugg-ugcg-c ggc-gaucgu ---------- ---------- 5701 -------(cu cgu---)--- ---------- ---------- -----acggc cgcc-gaug- 5761 uug----ccg -gaaa-|gau -gaccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGA~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Oka.utahen 5903 bp RNA RNA 11-JAN-191 DEFINITION Okanagana utahensis. ACCESSION No information KEYWORDS No information. SOURCE Okanagana utahensis. ORGANISM Okanagana utahensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U06478 LOCUS OUU06478 1918 bp DNA INV 01-SEP-1994 DEFINITION Okanagana utahensis 18S ribosomal RNA gene, complete sequence. ACCESSION U06478 KEYWORDS . SOURCE Okanagana utahensis. ORGANISM Okanagana utahensis Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera; Hemipterodia; Hemiptera; Euhemiptera; Cicadomorpha; Cicadoidea; Cicadidae; Okanagana. REFERENCE 1 (bases 1 to 1918) AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera:Sternorrhyncha:Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-89 (1994) STANDARD full automatic REFERENCE 2 (bases 1 to 1918) AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of the Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny, and its eco-evolutionary and cladistic repercussions within the pre-Heteropterodea Hemiptera (s. l.) JOURNAL Pan-Pacific Entomol. (1994) In press STANDARD full automatic REFERENCE 3 (bases 1 to 1918) AUTHORS Campbell,B.C. TITLE Direct Submission JOURNAL Submitted (09-FEB-1994) Bruce C. Campbell, Plant Protection Research, Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, CA 94710-1100, USA STANDARD full automatic COMMENT NCBI gi: 532981 FEATURES Location/Qualifiers source 1..1918 /clone="CIC 18SB-1,3 and 6" /clone_lib="BCC and JDS-C" /organism="Okanagana utahensis" /specific_host="Artemisia tridentata" /tissue_type="thoracic muscle" /dev_stage="adult" rRNA 1..1918 /product="18S ribosomal RNA" primer_bind 1..21 /note="PCR primer" primer_bind 1107..1127 /note="PCR primer" primer_bind complement(1107..1127) /note="PCR primer" primer_bind complement(1901..1918) /note="PCR primer" BASE COUNT 467 a 471 c 535 g 444 t 1 others ORIGIN BASE COUNT 467 a 471 c 535 g 444 t 3986 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUCU-CA GU|------- |--------- ----[----- 121 acauacc--- -------ua- ---------- ---------- -acuaaggug aa-]------ 181 -----|---A CC|G-CAAA- AGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuugg 241 aucu<----- ---------- ---------- ---------- ---------- --uaacccgu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu ga|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-CUCUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GG---A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UAC UUU---AA-C GA-GUACC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucug---- --ugu-gcca c-gcug-ucg guu-caccg- -(cccgu--- ---------- 1801 ---------- )--cggu-gu c-aac-uggc au-gucu-gu g-ggacg--- -----uccug 1861 ccgguggcgg nca-cggg-- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---cgcccgg 1981 ccgugcguag gggcacgucc ccgaagcacg ccggcgcguc ccgguccgcc gaucc--aau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc c-gccgcggu gcuc(uucac 2161 u----)gag- ---------- ---------- -uguc-ga-g -gcg------ ---------- 2221 ---ggccggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A u--CAGGUCc ---------- ---------- ---------- ---------u 2521 cuuuaGGCCU GAAUAc-ugu GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UU---- -----ugga- -accaG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGG ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGAACC-U AAGC(-GAAA )--GC|A--- UUUGCC-AA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUCCCGU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AGC|CA|--- 3421 --gcgau-cc gcc-g-aagu u---(---cc uccgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGCU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGGUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAauagacg au--uuccgg uauccacaau agug------ 4381 ---------- ---------- ---------- ---------- --------cu -accggcgaa 4441 aucaau-auc u--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Ggc-g -g-c(----- 5041 --uuuua-)g ccg----acg AAAC-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucag cguguac--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --acccu--g gcc(gaaa-) ggccc----g ggcaacccgu -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c ugg-ugcg-c ggc-gaccgc ---------- ---------- 5701 -------(cu cgc---)--- ---------- ---------- -----gcggc cgcc-gaug- 5761 cca----ccg -ggaa-|gau -gaccgaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGA~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Spi.festin 5903 bp RNA RNA 11-JAN-191 DEFINITION Spissistilus festinus. ACCESSION No information KEYWORDS No information. SOURCE Spissistilus festinus. ORGANISM Spissistilus festinus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U06477 LOCUS SFU06477 1900 bp DNA INV 01-SEP-1994 DEFINITION Spissistilus festinus 18S ribosomal RNA gene, complete sequence. ACCESSION U06477 KEYWORDS . SOURCE three-cornered alfalfa treehopper. ORGANISM Spissistilus festinus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera; Hemipterodia; Hemiptera; Euhemiptera; Cicadomorpha; Membracoidea; Membracidae; Spissistilus. REFERENCE 1 (bases 1 to 1900) AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera:Sternorrhyncha:Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-89 (1994) STANDARD full automatic REFERENCE 2 (bases 1 to 1900) AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of the Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny, and its eco-evolutionary and cladistic repercussions within the pre-Heteropterodea Hemiptera (s. l.) JOURNAL Pan-Pacific Entomol. (1994) In press STANDARD full automatic REFERENCE 3 (bases 1 to 1900) AUTHORS Campbell,B.C. TITLE Direct Submission JOURNAL Submitted (09-FEB-1994) Bruce C. Campbell, Plant Protection Research, Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, CA 94710-1100, USA STANDARD full automatic COMMENT NCBI gi: 532980 FEATURES Location/Qualifiers source 1..1900 /clone="MEM 18SF-2,5,10 and 12; MEM 18SB-1,2, and 3" /clone_lib="BCC and JDS-C" /organism="Spissistilus festinus" /specific_host="Medicago sativa" /tissue_type="thoracic muscle" /dev_stage="adult" rRNA 1..1900 /product="18S ribosomal RNA" primer_bind 1..21 /note="PCR primer" primer_bind 1091..1121 /note="PCR primer" primer_bind complement(1091..1121) /note="PCR primer" primer_bind complement(1883..1900) /note="PCR primer" BASE COUNT 472 a 441 c 523 g 464 t ORIGIN BASE COUNT 472 a 441 c 523 g 464 t 4003 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUCU-AA GU|------- |--------- ----[----- 121 auaagcc--- -------a-- ---------- ---------- aauuaaggcg aa-]------ 181 -----|---A CC|G-CAAA- AGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuugg 241 aucg<----- ---------- ---------- ---------- ---------- uacaauccau 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu ga|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GA(-UUCUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGG--A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GUACC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG C-G(CCA-GC -CCCC|GC-G GC-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucug---- --ugu-cuaa c-ggug-ucg guu-caccg- -(cucg---- ---------- 1801 ---------- )--cggu-g- u-aac-uggc gc-gccg-gu u-ggacg--- -----uccug 1861 ccgguggggg ug--cggg-- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---cucucgg 1981 ucu--ugucu agg---uucg ccgaagcaug ccg-ugaguu ccgg-ccgcc gauuc--aau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc c-gccgcggu gcuc(uuaac 2161 u----)gag- ---------- ---------- -uguc-ga-g -gug------ ---------- 2221 ---ggccggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-A G--CAGGCUg ---------- ---------- ---------- ---------- 2521 auuucCGCCU GAAUAc-ugu GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UA---- ------agaa -uccgA-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGG ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-UU -AGAG(GC-G AAA---)UUC U-UGGU-U-C 3061 GUCGC-AAG- A-CGUACC-U AAGC(-GAAA )--GC|A--- UUUGCC-AA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCCUCGU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AGC|CA|--- 3421 --gcgau-cc gcc-a-aagu u---(---cc uccgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGCU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAcuaggcg uu---ucugg uauccacaau agug------ 4381 ---------- ---------- ---------- ---------- --------cu -accagcga- 4441 auaaau-uuc u--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Ggc-g -g-c(----- 5041 --uucua-)g ccg----acg AGAC-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucag cgugucu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--g gcc(gaaa-) ggucc----g gguaacccgu -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c ugg-ugcg-c ggu-gaucgc ---------- ---------- 5701 -------(cu cgu---)--- ---------- ---------- -----guggu cacc-gaug- 5761 uug----ccg -ggaa-|gau -gaccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGA~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pro.margin 5903 bp RNA RNA 11-JAN-191 DEFINITION Prokelisia marginata. ACCESSION No information KEYWORDS No information. SOURCE Prokelisia marginata. ORGANISM Prokelisia marginata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09207 LOCUS PMU09207 1912 bp DNA INV 01-SEP-1994 DEFINITION Prokelisia marginata 18S rRNA gene. ACCESSION U09207 KEYWORDS . SOURCE Prokelisia marginata. ORGANISM Prokelisia marginata Eucaryotae; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera; Hemipterodia; Hemiptera; Homoptera; Fulgoromorpha. REFERENCE 1 (bases 1 to 1912) AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera:Sternorrhyncha:Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3 (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1912) AUTHORS Campbell,B.C. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) Bruce C. Campbell, Plant Protection Research (PPR), Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, CA 94710-1100, USA STANDARD full automatic COMMENT NCBI gi: 533093 FEATURES Location/Qualifiers source 1..1912 /clone="pPmar 18SB-1r" /clone_lib="BCC and JDS-C" /organism="Prokelisia marginata" /specific_host="Spartina alterniflora" /tissue_type="whole insect" /dev_stage="adult" /isolate="San Diego, CA" primer_bind 1..21 rRNA 1..1912 /product="18S rRNA" primer_bind complement(1892..1912) BASE COUNT 462 a 452 c 527 g 471 t ORIGIN BASE COUNT 462 a 452 c 527 g 471 t 3991 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-AGUCU-CA GU|------- |--------- ----[----- 121 acaagcc--- -------a-- ---------- ---------- cauuaaggcg aa-]------ 181 -----|---A CC|G-CAAA- AGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuugg 241 aucg<----- ---------- ---------- ---------- ---------- uacaauccau 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcauccuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUCUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGG--A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----AUACUC -UAAA--UCC UUG---UA-C AA-GUAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucug---- --ugu-ccuu c---cg-cag guu-caccg- -(ccugu--- ---------- 1801 ---------- )--cggu-gc c-aac-uggc g-uuuu--gc g-ggacg--- -----uccug 1861 ucgguggugu gucaggaauc uuaguu-gug cuaugcuuug cuu-agugca gcucugguuu 1921 cgggc----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ------cacu -uuca-uaau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc c-gccgcggu gcuc(uuaau 2161 c----)gag- ---------- ---------- -uguc-ga-g -gcg------ ---------- 2221 ---ggccggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUCA-A G--CAGGCUu ---------- ---------- ---------- ---------- 2521 -gucaCGCCU GUAUAc-ugu GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------ggaa --ucuG-AG- G-UAA-UGAU CAAUG>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGG ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AA----)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-GCGACC-G AAGC(-GAAA )--GC|A--- UUUGCCgAA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUCCCGU -CGA-U|CGa A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACAAUGCC UGC|CA|--- 3421 --gcgau-cc gcc-g-gcgu c---(---cc uccgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -GAGCU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AC UAAcuagacg ua---ugugg uaucagcaau cgug------ 4381 ---------- ---------- ---------- ---------- --------cu -accagcgau 4441 cauau--cuc u--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Ggc-g -g-c(----- 5041 --uucua-)g ccgc---acg AGAC-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucag cgugucu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--g ucc(gaaa-) ggacc----g gguaacccgc -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-U-GGG AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c cgg-ugcg-c gga-ggcgg- ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ------ccgc uccc-gaug- 5761 uug----ucg -gaaa-|gau -gaccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGA~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lyg.hesper 5903 bp RNA RNA 11-JAN-191 DEFINITION Lygus hesperus. ACCESSION No information KEYWORDS No information. SOURCE Lygus hesperus. ORGANISM Lygus hesperus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U06476 LOCUS LHU06476 1922 bp DNA INV 01-SEP-1994 DEFINITION Lygus hesperus 18S ribosomal RNA gene, complete sequence. ACCESSION U06476 KEYWORDS . SOURCE lygus bug. ORGANISM Lygus hesperus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera; Hemipterodia; Hemiptera; Euhemiptera; Neohemiptera; Heteropterodea; Heteroptera; Euheteroptera; Neoheteroptera; Panheteroptera; Cimicomorpha; Cimicoidea; Miridae; Lygus. REFERENCE 1 (bases 1 to 1922) AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera:Sternorrhyncha:Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-89 (1994) STANDARD full automatic REFERENCE 2 (bases 1 to 1922) AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of the Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny, and its eco-evolutionary and cladistic repercussions within the pre-Heteropterodea Hemiptera (s. l.) JOURNAL Pan-Pacific Entomol. (1994) In press STANDARD full automatic REFERENCE 3 (bases 1 to 1922) AUTHORS Campbell,B.C. TITLE Direct Submission JOURNAL Submitted (09-FEB-1994) Bruce C. Campbell, Plant Protection Research, Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, CA 94710-1100, USA STANDARD full automatic COMMENT NCBI gi: 532979 FEATURES Location/Qualifiers source 1..1922 /clone="LYG 18SF-2,3; LYG 18SB-1,5,6" /clone_lib="BCC and JDS-C" /organism="Lygus hesperus" /tissue_type="thoracic muscle" /dev_stage="adult" rRNA 1..1922 /product="18S ribosomal RNA" primer_bind 1..21 /note="PCR primer" primer_bind 1111..1131 /note="PCR primer" primer_bind complement(1111..1131) /note="PCR primer" primer_bind complement(1905..1922) /note="PCR primer" BASE COUNT 482 a 459 c 517 g 464 t ORIGIN BASE COUNT 482 a 459 c 517 g 464 t 3981 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GCUU AA-GCCAUGC A-AGUCU-CA GU|------- |--------- ----[----- 121 acaaacu--- -------g-- ---------- ---------- uauuaaagug aa-]------ 181 -----|---A CC|G-CAAA- AGGCU-CAGU AAAC-cagu- cau-gauu-- ----cacucg 241 agua<----- ---------- ---------- ---------- ---------- uacaugacug 301 u>cuUUGG-A UAACUGUGG( -U-AAUC)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -uuauccuuc -aa|augccu ga|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GA(-CUCCAU G)UCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---uuau)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C AA-GGAUC-- ----->CAUU 1561 GAAG|GG-CA A-GU-C-UGG U-G(CCA-GC -UGCC|GC-G GU-AA)UUCC AG-|CUUCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 guucug---- --cgu-gcca c-gcug-ucg guu-cgccg- -(ccugc--- ---------- 1801 ---------- )--cggu-g- u-aac-uggc a-ugcc--gu g-gcaug--- -----uccug 1861 ucgguggcgu u-cgggagcc ucgucuaggu gacggcccuu gccacaagcu ugguguccgg 1921 aggccggggg uauacucguu ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ------cgcc -uacu-cuau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc u-accuaggu gcuc(uucac 2161 c----)gag- ---------- ---------- -uguc-ga-g -gua------ ---------- 2221 ---ggccgac ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCUg ---------- ---------- ---------- --------aa 2521 aucucUGCCU GAAUAg-ug- GUGCAUGGAA -------|UA -AUAAAA-CA -GGAcCuugg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UC-UU---- -----aggaa --cacA-AG- G-UAA-UGAU CAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -CGGA|CAGG ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGCACA-A GAGC(-GAAA )--GC|A--- UUUGCC-AA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUGAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AGC|CA|--- 3421 --gcgau-cc gcc-g-augu u---(---cc uccgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -g-agcuucu uc-------- ----ccGG(- 3661 GAAA-)CCa- -AAGCU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[agg-aca 4081 uugg-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UA-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-UCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AU UAAcuaggcg uu--uaccgg uguccccg-- ---------- 4381 ---------- ---------- ---------- ---------- --------cc -accggcgac 4441 aauca--uuc u--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AAGGG]---- --|------- ---------- GACA-Ggc-g -g-c(----- 5041 --uuaua-)g ccgc---acg AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucag cgugugcc-- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--g gcc(gaaa-) ggccc----g gguaauccgc -ugaac]--- ---------- 5461 -------CUC CUg-C-G--- UGCU-A-GGA AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c uggcgguaau cccuaccga- ---------- ---------- 5701 -------(cu ug----)--- ---------- ---------- ------ucgg uauc-gaug- 5761 aacg---cug -gaaa-|gau -gaccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGA~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pea.kellog 5903 bp RNA RNA 11-JAN-191 DEFINITION Pealius kelloggii. ACCESSION No information KEYWORDS No information. SOURCE Pealius kelloggii. ORGANISM Pealius kelloggii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U06479 LOCUS PKU06479 2496 bp DNA INV 08-OCT-1994 DEFINITION Pealius kelloggii 18S ribosomal RNA gene, complete sequence. ACCESSION U06479 KEYWORDS . SOURCE Kellogg's whitefly. ORGANISM Pealius kelloggii Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera; Hemipterodia; Hemiptera; Sternorrhyncha; Aleyrodiformes; Aleyrodoidea; Aleyrodidae; Aleyrodinae; Pealius. REFERENCE 1 (bases 1 to 2496) AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera:Sternorrhyncha:Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-89 (1994) STANDARD full automatic REFERENCE 2 (bases 1 to 2496) AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of the Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny, and its eco-evolutionary and cladistic repercussions within the pre-Heteropterodea Hemiptera (s. l.) JOURNAL Pan-Pacific Entomol. (1994) In press STANDARD full automatic REFERENCE 3 (bases 1 to 2496) AUTHORS Campbell,B.C. TITLE Direct Submission JOURNAL Submitted (09-FEB-1994) Bruce C. Campbell, Plant Protection Research, Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, CA 94710-1100, USA STANDARD full automatic COMMENT NCBI gi: 532982 FEATURES Location/Qualifiers source 1..2496 /clone="PKW 18SF-2,3 and 4; PKW 18SB-1,3 and 4" /clone_lib="BCC and JDS-C" /organism="Pealius kelloggii" /specific_host="Prunus lyonii" /tissue_type="whole insect" /dev_stage="nymph" rRNA 1..2496 /product="18S ribosomal RNA" primer_bind 1..21 /note="PCR primer; used with primer3" /label=primer1 primer_bind 1446..1466 /note="PCR primer; used with primer4" /label=primer2 primer_bind complement(1446..1466) /note="PCR primer; used with primer1" /label=primer3 primer_bind complement(2479..2496) /note="PCR primer; used with primer2" /label=primer4 BASE COUNT 490 a 727 c 783 g 496 t ORIGIN BASE COUNT 490 a 727 c 783 g 496 t 3407 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUCGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 gcaagcc--- -------g-- ---------- ---------- aacuaaggug ga-]------ 181 -----|---A CC|G-CGAA- AGGCU-CAUU AAAU-cagu- ugu-cguu-- ----cacagg 241 aucg<----- ---------- ---------- ---------- ---------- ugccaaaccu 301 u>ACaUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcauccuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GACGGUC- 1141 GG(-AUAGAG G)CCU-ACCG U-|GGUUG-c gAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGG--A-GGU -|A|GUGACG GAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CGAUGCGGG- -ACUC(---- ---aacc)GA GGCCC-CGUG A-UCGGAAU- 1501 ------GAGC ----GCCCCG -UAAA--CAA GGC---GA-C GA-GGACC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 C-AGCGUA|U ACUAA--UGU UGUUG-CGG| UUA--AAAAG CUCGUAGUCA |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaauug---- --ugu-uccg c-gccg-acg gu-ucgacg- -(gccuu--- ---------- 1801 ---------- )--cgugccg uugcacaccg acgcguuacg aacauccggc cgguggcggu 1861 acgg-cgccg uccgcgggcu cgcccguccu ucuggacucg ggg---uugc gguuccggc- 1921 ccc-ucgccg ucagugucg- uucgcccaua ucccauugca cucgugcauu gaucaagcgc 1981 ggccuuucgg ggucccuccg gaccgggcuc gggcccccgc ggcauucccg gcggaguccc 2041 ccguggaccc cgcccgggag agcggacccg auaggcauuu ccggcggcgc ggugaggauc 2101 cuccucgccc ggccguccgg gagaccgucc gccaauuuuc ccgccgcggu gcuc(uucau 2161 c----)ggg- ---------- ---------- -uguc-gc-u -gcg------ ---------- 2221 ---ggccggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------acUU ACcUUG-AAC A--AAUUAGA 2461 GUGCUCAu-c g--cgagga- ---------- ---------c guucgaaaaa acguccgaaa 2521 ggcguGGCCc GcAUAc-ag- GUGCAUGGGA -------|UA -ACAGAA-UA -CGAcCucgg 2581 cuc----cgg gguuucgucg guucaccggg cccgucgcug acccggaagc guaggauacc 2641 gcuauugcgg gcaccuucgu ccga------ ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- -------cgg ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-cgcg 2821 -gc-gggucu -uu-gc---- ------gggg --uccG-AG- G-UAA-UGAU CGAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGG|CGGA ---------- 3001 --CGGGGGCA UC|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGAACA-G CUGC(-GAAG )--GC|G--- CUUGUC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AGG ---UUCCCGU -UGA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACUAUGCC AGC|UA|--- 3421 --gcgau-cc gcc-g-acga u---(---cc cuccguuau) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-gg-cgg-g -c-cgcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGCU-aac gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AA 3721 CUG-GAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugagagu)-- --ucuuucuc gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- uUGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCCC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAGuuaggcg au-ccgggcg ccucccgcuc ccgg-gcggu 4381 cgcu--cgcu cgcggguggc cguuuuggac ggggggcuuu aagcccggga cccgguaucg 4441 ugauccguac uccguc---- ---------- ---------- -------cgc c---cgc--c 4501 u---cgu--- gcgggcgaga ccccgucgag gcggccggcu ccg-cgguuu acgccgugcg 4561 a--gucgguc guucaccggc gggagca-gu gagucggagg gcccgguccu uucgggggcc 4621 ggacacgcuc ---gcuaccg gcgggacuuu auucagcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-aac-g -g-c(----- 5041 gaaguca-)g ccgu---gcg AUAC-GGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCGGC A-CGCGUGCU ACAAU--G-G ACGGA----- ---------- 5281 ---------- -----[ucag cguguucu-- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 -acccua--c guc(gaga-) gacau----c gguaaccccc -ugaau]--- ---------- 5461 -------CCC GUC-C-G--- UGGA-A-GGG ACCGGGGCU( UGCAAUUG)U UCCCCGCG-A 5521 ACGAGG-AAU U--CCCAGUA GU-CGC-GAG (-UCAUAAC- )CUCGC-G-G -CGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG AG-CGGUuc- 5641 ggc-gagg-a cc-uccua-c ggc-ucgccg gcgaccgcuc cgugcg--g- ---------- 5701 -----ggccg cc--gg---- ---------- ---------- ugcagcgugc gguu-uugu- 5761 gcc----gcg -gaaa-|guc -gaccgagcc cg-AUC-G-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGA~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Acy.pisum 5903 bp RNA RNA 11-JAN-191 DEFINITION Acyrthosiphon pisum. ACCESSION No information KEYWORDS No information. SOURCE Acyrthosiphon pisum. ORGANISM Acyrthosiphon pisum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X62623 ID AP18SRRN standard; DNA; INV; 2469 BP. XX AC X62623; XX DT 30-JAN-1992 (Rel. 30, Last updated, Version 2) DT 30-JAN-1992 (Rel. 30, Created) XX DE A.pisum gene for 18S ribosomal RNA XX KW 18S rDNA; 18S ribosomal RNA; ribosomal RNA. XX OS Acyrthosiphon pisum OC Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; OC Pterygota; Neoptera; Hemipterodea; Homoptera; Sternorrhyncha; OC Aphidoidea; Aphididae. XX RN [1] RP 1-2469 RA Kwon O.; RT ; RL Submitted (24-SEP-1991) on tape to the EMBL Data Library by: RL O. Kwon, Zoological Institute, Faculty of Science, University of RL Tokyo, Hongo, Bunkyo-Ku, Tokyo 113, JAPAN XX RN [2] RP 1-2469 RA Kwon O.Y., Ogino K., Ishikawa H.; RT "The longest 18s ribosomal RNA ever known: nucleotide sequence and RT presumed secondary structure of the 18s rRNA of the pea aphid, RT Acyrthosiphon pisum"; RL Eur. J. Biochem. 202:827-833(1991). XX CC *source: stage=adult; XX FH Key Location/Qualifiers FH FT CDS 1..2469 FT /product="18s rRNA" XX SQ Sequence2469BP;489A;698C;769G;513T;0other; BASE COUNT 489 a 698 c 769 g 513 t 3434 others ORIGIN 1 |--------- -----UCCCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 gcaagcc--- -------g-- ---------- ---------- cauuaaggug aa-]------ 181 -----|---A CC|G-CGAA- ACCGU-CAUU AAAU-cagu- ugu-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- -uacccaagu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUCCAU G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GCC 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCC--G( ---gaa--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGA ----ACACUU -UAAA--ACC UUU---AAaC GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-CGCGUA|U AUUAA--AGU UAUUG-CGG| UUA--AAAAG CUCGUAGUCG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucug---- --ugu-cugg a-cggu-gcc g-gaccaccc -uggc-gg-- ---------- 1801 --ucc---gu cgugucgcgg c-cgg-ccgu gucgcgggac cacggug--- -----ucccg 1861 ucggcgcgg- -------ucg ccgucgcgcu cgucagccgu cucggggugu uaguuaccgg 1921 cacgucggcc ggacguauug ucggcaggcg g--acacgug ucgugcuucc ggcccgccgu 1981 cgcggccacg cgucgcgcgg ccgucggugu ucgacgacgg cggccgaccu acuccaaucu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug c-ugcgcggu gcuc(uucac 2161 c----)gag- ---------- ---------- -ugcc-gucg -gcg------ ---------- 2221 ---ggccgac ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCUc ------gaau cuggcggggc ggcuucacgg ccgucucguc 2521 aaaagGCCCU GAAUAc-ugg ucGCAUGGAA -------|UA -AUGGAA-CA -AGAcCucgg 2581 ucc----cgc gcaucuccgc ccuucgcggg acgcgcgaaa ucgccuc-cg gggcguuucc 2641 gugcgcgggc cgccgggcc- -gcgggcgcc agu-cgcccg cgcg------ ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-cgcc 2821 -gg-gccGGU -UU-UC---- -----GGG-- -accgG-AG- G-UAA-UGAU CAACA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAGA|CGGG ---------- 3001 --CGGGGGCA UU|--CGUAC CGAGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCUC-GAG- A-CGAACU-G ACGC(-GAAA )--GC|A--- UUUGCC-AA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUCUCGU aUGA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACU-GU AAACGAUGCC AGC|UA|--- 3421 --gcgau-cc gcc-g-gcgu u---(---uc auuaac---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCg- -AAGCU-uuu cGGU|-U|C- CGGGGGAAGU AU--GA-UU( --GCAA-)AG 3721 UUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCGCCAGG CC[cgg-aca 4081 ccgg-aaaga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UCUGUC- -UGG(UU-A- --)------- AC-GAACGAG ACUCU-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAcuaggcg g---uaaacc cgggucggcg ugug-cgcgg 4381 ---------- ------cgcu ggcgguuucg gccgucagug uucgcguacc cgucggcucg 4441 gcccgguauc cccgaacgcg uucgcccguc guccacggcg gucgucgggc gcggccgcgc 4501 cauccgcguc ccggcguucg gcgggcguau gucggccggg gggcaaccuc cggucggccu 4561 gcguccgucg ugcgucgggc uccgugguga agcgcgccgu guucgcggcc gucgccggcg 4621 gaucacgaua cguuacuagg gcuaccgccg gcucccag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gagcuu aaacucu--- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Ggc-g -g-c(-ggac 5041 gaacaua-)g ccgc---acg AGAC-UGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUGgUG A|UGCC|CG- 5221 UuAGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucag cgaguuuaac aa-------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uccug--g gcc(gaca-) ggcuuc--cg gguaacccgc -ugaac]--- ---------- 5461 --------CG CUU-C-Ga-- GCUU-A-GGG AUCGUGGCU( UGCAAUUU)U UCCACGUG-A 5521 AC--GG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-CGGUcgc 5641 auu-gagg-u cu-ucgga-g ugg-acgc-g cguuauucgg c--------- ---------- 5701 ------c(cc cuc---)g-- ---------- ---------- ----cguggg ucgu-cgcg- 5761 cga----ucg -c-aa-|gau -gaccgaaau cg-GCC-G-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-- CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Aon.aurant 5903 bp RNA RNA 11-JAN-191 DEFINITION Aonidiella aurantii. ACCESSION No information KEYWORDS No information. SOURCE Aonidiella aurantii. ORGANISM Aonidiella aurantii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U06475 LOCUS AAU06475 2373 bp DNA INV 01-SEP-1994 DEFINITION Aonidiella aurantii 18S ribosomal RNA gene, complete sequence. ACCESSION U06475 KEYWORDS . SOURCE California citrus scale. ORGANISM Aonidiella aurantii Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera; Hemipterodia; Hemiptera; Sternorrhyncha; Aphidiformes; Coccoidea; Diaspidae; Aonidiella. REFERENCE 1 (bases 1 to 2373) AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera:Sternorrhyncha:Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-89 (1994) STANDARD full automatic REFERENCE 2 (bases 1 to 2373) AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of the Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny, and its eco-evolutionary and cladistic repercussions within the pre-Heteropterodea Hemiptera (s. l.) JOURNAL Pan-Pacific Entomol. (1994) In press STANDARD full automatic REFERENCE 3 (bases 1 to 2373) AUTHORS Campbell,B.C. TITLE Direct Submission JOURNAL Submitted (09-FEB-1994) Bruce C. Campbell, Plant Protection Research, Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, CA 94710-1100, USA STANDARD full automatic COMMENT NCBI gi: 532978 FEATURES Location/Qualifiers source 1..2373 /clone="CRS 18SF-9,22; CRS 18SB-2,3,5" /clone_lib="BCC and JDS-C" /organism="Aonidiella aurantii" /specific_host="Laurus nobilis" /tissue_type="whole insect" /dev_stage="nymphs" rRNA 1..2373 /product="18S ribosomal RNA" primer_bind 1..21 /note="PCR primer" primer_bind 1353..1373 /note="PCR primer" primer_bind complement(1353..1373) /note="PCR primer" primer_bind complement(2356..2373) /note="PCR primer" BASE COUNT 486 a 632 c 719 g 536 t ORIGIN BASE COUNT 486 a 632 c 719 g 536 t 3530 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 gcaagcc--- -------g-- --------uc ---------- cuguacggug aa-]------ 181 -----|---A CC|G-CGAA- AGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 auag<----- ---------- ---------- ---------- ---------- uacccac-gu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucuuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GACGGUA- 1141 CG(-UUCGAU G)CUU-ACCG U-|GGUGG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-A( ---gcu--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--ACC UUG--gucac acgaggauc- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUCG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucug---- --uguccucg c-gac--guc g-gaccacca ugugcugcca cggucuccgu 1801 gcgcg---gc cagguguuug u-ucc-cggc gu-guca-gc g-ggacg--- -----uccug 1861 ccgguacggg acacgugucc guuguggcgc cucgcgucgc acggaaggcg gccg------ 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ------ccgu uuaa--a-uc 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug cgcgugcgau gc--(ccuug 2161 u----)--g- ---------- ---------- -guucguacg -gcg------ ---------- 2221 ---ggccggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCUu --------ua acguggcggg gucgcuccgc gugccucguc 2521 guacaGCCCU GAAUA--ugg ucGCAUGGAA -------|UA -AUGGAA-CA -AGAcCucgg 2581 ucc----cgc cucuacgcug ucucgcagcg cgugaacgua gccccucgcg gccguuccgu 2641 gcgcgggucg ccggucgggg cccgcauugc guccgcgucg cccgguccuu cccuuguggu 2701 ugugucucgg ucaccgugcg cggguuacgc acugucggga aucaccccga ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UUGU 2821 -UG-GCCGGU -UU-UC---- ------ggga --cugG-AG- G-UAA-UGAU CAACA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAGA|CAGG ---------- 3001 --CGUGGGCA UU|--CGUAC CGCG--G-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-GAG- A-CGAACC-G AAGC(-GAAA )--GC|A--- UUUGCC-AA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUCUCGU cUGA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACGAUGCC AGC|UA|--- 3421 --gcgau-cc gcc-g-gcgu u---(---cc ucugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCg- -AAGCU-uuu cGGU|-U|C- CGGGGGAGGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 ccgg-aaaga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAcuaggcg gg-uuccucg ucgcccgcgg augc-guucg 4381 gcgc--cuuc ugggugucgu gcgcgccgug gucuccgacg aaccgguauc cccgaacgcg 4441 gucggucguc guucacggcg ccuguggccu ucagguuuuu cguugcggcg gugcucucgg 4501 gugucgucgu ggcggauggc cgguugguug ugggugu--- ---------- ---------- 4561 ---------- ---------- ---------- ---------- --cgccggcg aucuucagcc 4621 gccaauagcu accgccggcu -gauaaagcu uaaacucu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Ggc-g -g-c(-ggac 5041 aaauaua-)g ccgc---acg AGAC-UGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucag cguguauacc ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 cuuccug--g gcc(gaga-- ggcuuuacca ggaaacccgc -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUCGGGGCU( UGCAAUUG)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUCAGc )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-CGACcgc 5641 agu-gagg-u cu-ucgga-c cga-ggugcg acg-gca--- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------ugcc ggcu-ugca- 5761 ucg----ccg -ggaa-|gau -gaccgaacu cg-GCC-G-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGA~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Tri.eugeni 5903 bp RNA RNA 11-JAN-191 DEFINITION Trioza eugeniae. ACCESSION No information KEYWORDS No information. SOURCE Trioza eugeniae. ORGANISM Trioza eugeniae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U06482 LOCUS TEU06482 2199 bp DNA INV 01-SEP-1994 DEFINITION Trioza eugeniae 18S ribosomal RNA gene, complete sequence. ACCESSION U06482 KEYWORDS . SOURCE eugenia psyllid. ORGANISM Trioza eugeniae Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda; Tracheata; Insecta; Pterygota; Neoptera; Hemipterodia; Hemiptera; Sternorrhyncha; Psyllidiformes; Psylloidea; Psyllidae; Trioza. REFERENCE 1 (bases 1 to 2199) AUTHORS Campbell,B.C., Campbell-Steffen,J.D. and Gill,R.J. TITLE Evolutionary origin of whiteflies (Hemiptera:Sternorrhyncha:Aleyrodidae) inferred from 18S rDNA sequences JOURNAL Insect Mol. Biol. 3, 73-89 (1994) STANDARD full automatic REFERENCE 2 (bases 1 to 2199) AUTHORS Sorensen,J.T., Campbell,B.C., Gill,R.J. and Steffen-Campbell,J.D. TITLE Non-monophyly of the Auchenorrhyncha ('Homoptera'), based upon 18S rDNA phylogeny, and its eco-evolutionary and cladistic repercussions within the pre-Heteropterodea Hemiptera (s. l.) JOURNAL Pan-Pacific Entomol. (1994) In press STANDARD full automatic REFERENCE 3 (bases 1 to 2199) AUTHORS Campbell,B.C. TITLE Direct Submission JOURNAL Submitted (09-FEB-1994) Bruce C. Campbell, Plant Protection Research, Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, CA 94710-1100, USA STANDARD full automatic COMMENT NCBI gi: 532985 FEATURES Location/Qualifiers source 1..2199 /clone="TEG 18SF-4 and 5; TEG 18SB-1,4,5 and 6" /clone_lib="BCC and JDS-C" /organism="Trioza eugeniae" /tissue_type="whole insect" /dev_stage="nymph" rRNA 1..2199 /product="18S ribosomal RNA" primer_bind 1..21 /note="PCR primer" primer_bind 1269..1290 /note="PCR primer" primer_bind complement(1269..1290) /note="PCR primer" primer_bind complement(2182..2199) /note="PCR primer" BASE COUNT 486 a 552 c 650 g 511 t ORIGIN BASE COUNT 486 a 552 c 650 g 511 t 3704 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |--------- ----[----- 121 gcaagcc--- -------gua cgcguucgcg ---------- cgucuaggug aa-]------ 181 -----|---A CC|G-CGAA- AGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuugg 241 aucg<----- ---------- ---------- ---------- ----uacccc uuuuacaagu 301 u>ACUUGG-A UGACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUAUGC G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUC- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-A( ---gcuc-)A 1321 GGGG-A-GGU -|A|GUGACG AAAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aucc)GA GGCCU-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUC -UAAA--ACG UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-UGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaugug---- --ugu-cucg c-ggug-ucg guu-caccg- -(cucgacgg ---------- 1801 ---------- )--cggu-gu u-aac-uggc g-cguca-gc g-aaaug--- -----uccug 1861 ccgguggccg guucggcucg cuucuucgug cgcgcacgac gcauucuucg ---------- 1921 ---------- ---------- -----gauug cucgugccgc cgagcugcgc gucggccguc 1981 gcccuggcuu cgcggccagg uguuguccug ucgcggug-- ----cggaga cgacgucggc 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cu c-gugucggc gcuc-gcucu 2161 u-----ccg- ---------- ---------- -uguc-ga-g -gcg------ ---------- 2221 ---gaccggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCAa ---------- ---gcaaagu gugacggguc cccaaagggc 2521 ccggcCGCCU GAAUAc-ugu GUGCAUaGAA -------|UA -ACUGAA-UA -GGAcGucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- -------cag uucgcaaugu guuc|---ga 2821 -ag-agaGGU -UU-UC---- ------ggaa --cccG-AC- G-UAA-UGAU UAACA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGG ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UAGA-U-C 3061 GUCGC-AAG- A-CGAACC-G AAGC(-GAAA )--GC|G--- UUUGCC-AA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UCCCCGU -UGA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGUC AGC|CA|--- 3421 --gcgau-cc acu-a-acgu u---(---cc uccgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-ag-ugg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGCU-uuu gGAU|-U|C- CAGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGU ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG CC[cgg-aca 4081 ccgg-aggga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-UU|- ---------- 4321 ------(--- --)[CCU-GC UAAcugggcg ----ucagca a---ucgacu cc-g-c-cg- 4381 -gcu--gggg cu---gggaa ccacc-gug- -cgcguuacg ggcgaacggg cgugcgguag 4441 ccuucacggg uugucguacg uuccguucgu uccgggcgcg ugcggcccag uuccuggucg 4501 gcgagcuacg ugcgcacuuu aaucc----- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Gac-g -g-c(----- 5041 --gucua-)g ccgu---acg AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucag cgcguccuau ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --accug--g gcc(gaga-) ggucc----g gguaacccac -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGAU-A-GGG AUCGGGGCU( UGCAAUUU)U UCCCCGUG-A 5521 ACGAGG-AAU U--UCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c cgg-ugcg-c gga-aggggc c--------- ---------- 5701 -------(uc gu----)--- ---------- ---------- ----gcgcuc uucc-gacg- 5761 uuca---ucg -gaaa-|gau -gaccaaacu ug-AUU-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGA~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (9)-Mollus 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS M.polynyma 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11230 LOCUS MMERR18SA 1841 bp ss-rRNA RNA 13-AUG-1993 DEFINITION Mactromeris polynyma 18S ribosomal RNA (18S rRNA). ACCESSION L11230 KEYWORDS 18S ribosomal RNA. SOURCE Mactromeris polynyma muscle rRNA. ORGANISM Mactromeris polynyma Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Heterodonta; Veneroida; Mactracea; Mactridae. REFERENCE 1 (bases 1 to 1841) AUTHORS Rice,E.L., Roddick,D. and Singh,R.K. TITLE A comparison of molluscan (bivalvia) phylogenies based upon palaeontological and molecular data JOURNAL Mol. Marine Biol. Biotechnol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1841 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1841 /organism="Mactromeris polynyma" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="muscle" BASE COUNT 436 a 455 c 524 g 426 t ORIGIN BASE COUNT 436 a 455 c 524 g 426 t 4062 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac acgcc--uca ---------- -ac-acggcg ag-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|gugucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG-GAGAGG G-AGCA(U-G AGAUAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ugca ggcuu--g-c g-gu-ccgcc ucgcggcg-- ---------- 1801 ---------- -guc-acugc u-cg--uccu g-accuccac g-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cggU-UGUC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------CG C-GCCCUGGU GCUC(UUGAU 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GCC------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 uuUGCCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GCUGGU -UU-UC---- ------GG-- -A-GCUCGAG G-UAA-UGAU UAGUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CAGC(-GAUA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --ucgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agacu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -GAGUU-UUU GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGUG|C GU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCCGG CC[cgg-aca 4081 ccgu-uagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCuc g--gggaucc ---------- --uu-cgc-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gag uccccgcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-gcu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-GGU-g -g-c(----- 5041 --gcuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CAUGCGCU ACAAU--G-A AUGGA----- ---------- 5281 ---(------ ----)[ucag cgugcgu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cucgccu-gg ucc(gaaa-) ggauc----g ggaaacccgu -ugaac]--- ---------- 5461 -------CCC AUU-C-G--- UACU-A-GGG AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA GG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG CU-CCAGuu- 5641 aau-gagc-u cu-ucgga-u ugg-accc-g ugggcccgcu ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- -----ggcgg gccg-ucgg- 5761 ug-g---ccg -agaa-|gau -gcgcaaauu ga-ccg-g-g guag-AGGUC GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS M.laterali 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11268 LOCUS MULRR18S 1841 bp ss-rRNA RNA 13-AUG-1993 DEFINITION Mulinia lateralis 18S ribosomal RNA (18S rRMNA). ACCESSION L11268 KEYWORDS 18S ribosomal RNA. SOURCE Mulinia lateralis muscle rRNA. ORGANISM Mulinia lateralis Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Heterodonta; Veneroida; Mactracea; Mactridae. REFERENCE 1 (bases 1 to 1841) AUTHORS Rice,E.L., Roddick,D. and Singh,R.K. TITLE A comparison of molluscan (bivalvia) phylogenies based upon palaeontological and molecular data JOURNAL Mol. Marine Biol. Biotechnol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1841 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1841 /organism="Mulinia lateralis" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="muscle" BASE COUNT 444 a 454 c 520 g 423 t ORIGIN BASE COUNT 444 a 454 c 520 g 423 t 4062 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac acgcc--uca ---------- -ac-acggcg ag-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|gugucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG-GAGAGG G-AGCA(U-G AGAUAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ugca ggcug--g-c g-gu-ccgcc ucgcggcg-- ---------- 1801 ---------- -guc-acugc u-cg--uccu g-accuccac g-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cggU-UGUC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------CG C-GCCUUGGU GCUC(UUGAU 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GCC------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCU- ---------- ---------- ---------- ---------- 2521 acUACCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GCUGGU -UU-UC---- ------GG-- -A-GCUCGAG G-UAA-UGAU UAAAA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CAGC(-GAUA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---CUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --ucgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agacu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUG-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGUG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCCGG CC[cgg-aca 4081 ccgu-uagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCuc g--gggaucc ---------- --uu-cgc-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gag uccccguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-gcu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-GGU-g -g-c(----- 5041 --gcuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CAUGCGCU ACAAU--G-A AUGGA----- ---------- 5281 ---(------ ----)[ucag cgugcgu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cucgccu-gg ucc(gaaa-) ggauc----g ggaaacccgu -ugaac]--- ---------- 5461 -------CCC AUU-C-U--- UAAU-A-GGG AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA GG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG CU-CCAGuu- 5641 aau-gagc-u cu-ucgga-u ugg-accc-g auggcccgcu ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- -----ggcgg gccg-ccgg- 5761 ug-g---ccg -agaa-|gau -gcgcaaauu ga-ccg-g-g guag-AGGUC GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS S.solida 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11266 LOCUS SIURR18S 1841 bp ss-rRNA RNA 13-AUG-1993 DEFINITION Spisula solida 18S ribosomal RNA (18S rRNA). ACCESSION L11266 KEYWORDS 18S ribosomal RNA. SOURCE Spisula solida muscle rRNA. ORGANISM Spisula solida Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Heterodonta; Veneroida; Mactracea; Mactridae; Mactrinae. REFERENCE 1 (bases 1 to 1841) AUTHORS Rice,E.L., Roddick,D. and Singh,R.K. TITLE A comparison of molluscan (bivalvia) phylogenies based upon palaeontological and molecular data JOURNAL Mol. Marine Biol. Biotechnol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1841 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1841 /organism="Spisula solida" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="muscle" BASE COUNT 439 a 455 c 522 g 425 t ORIGIN BASE COUNT 439 a 455 c 522 g 425 t 4062 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac acgcc--uca ---------- -ac-acggcg ag-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|gugucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG-GAGAGG G-AGCA(U-G AGAUAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ugca ggcuu--g-c g-gu-ccgcc ucgcggcg-- ---------- 1801 ---------- -guc-acugc u-cg--uccu g-accuccac g-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cggU-UGUC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------CG C-GCCUUGGU GCUC(UUGAU 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GCC------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 acUGCCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GCUGGU -UU-UC---- ------GG-- -A-GCUCGAG G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CAGC(-GAUA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---CUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --ucgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agacu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUG-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGUG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCCGG CC[cgg-aca 4081 ccgu-uagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCuc g--gggaucc ---------- --uu-cgc-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gag uccccguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-gcu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-GGU-g -g-c(----- 5041 --gcuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CAUGCGCU ACAAU--G-A AUGGA----- ---------- 5281 ---(------ ----)[ucag cgugcgu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cucgccu-gg ucc(gaaa-) ggauc----g ggaaacccgu -ugaac]--- ---------- 5461 -------CCC AUU-C-G--- UACU-A-GGG AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA GG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG CU-CCAGuu- 5641 aau-gagc-u cu-ucgga-u ugg-accc-g ugggcccgcu ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- -----ggcgg gccg-ucgg- 5761 ug-g---ccg -agaa-|gau -gcgcaaauu ga-ccg-g-g guag-AGGUC GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS S.solidiss 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11270 LOCUS SIURR18SB 1841 bp ss-rRNA RNA 13-AUG-1993 DEFINITION Spisula solidissima 18S ribosomal RNA (18S rRNA). ACCESSION L11270 KEYWORDS 18S ribosomal RNA. SOURCE Spisula solidissima muscle rRNA. ORGANISM Spisula solidissima Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Heterodonta; Veneroida; Mactracea; Mactridae; Mactrinae. REFERENCE 1 (bases 1 to 1841) AUTHORS Rice,E.L., Roddick,D. and Singh,R.K. TITLE A comparison of molluscan (bivalvia) phylogenies based upon palaeontological and molecular data JOURNAL Mol. Marine Biol. Biotechnol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1841 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1841 /organism="Spisula solidissima" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="muscle" BASE COUNT 438 a 455 c 522 g 426 t ORIGIN BASE COUNT 438 a 455 c 522 g 426 t 4062 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac acgcc--uca ---------- -ac-acggcg ag-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|gugucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUGA-U AUC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG-GAGAGG G-AGCA(U-G AGAUAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ugca ggcuu--g-c g-gu-ccgcc ucgcggcg-- ---------- 1801 ---------- -guc-acugc u-cg--uccu g-accuccac g-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cggU-UGUC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------CG C-GCCUUGGU GCUC(UUGAU 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GCC------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 auUGCCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GCUGGU -UU-UC---- ------GG-- -A-GCUCGAG G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CAGC(-GAUA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---CUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --ucgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agacu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUG-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGUG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCCGG CC[cgg-aca 4081 ccgu-uagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCuc g--gggaucc ---------- --uu-cgc-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gag uccccguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-gcu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-GGU-g -g-c(----- 5041 --gcuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CAUGCGCU ACAAU--G-A AUGGA----- ---------- 5281 ---(------ ----)[ucag cgugcgu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cucgccu-gg ucc(gaaa-) ggauc----g ggaaacccgu -ugaac]--- ---------- 5461 -------CCC AUU-C-G--- UACU-A-GGG AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA GG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG CU-CCAGuu- 5641 aau-gagc-u cu-ucgga-u ugg-accc-g ugggcccgcu ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- -----ggcgg gccg-ucgg- 5761 ug-g---ccg -agaa-|gau -gcgcaaauu ga-ccg-g-g guag-AGGUC GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS S.subtrunc 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11271 LOCUS SIURR18SC 1841 bp ss-rRNA RNA 13-AUG-1993 DEFINITION Spisula subtruncata 18S ribosomal RNA (18S rRNA). ACCESSION L11271 KEYWORDS 18S ribosomal RNA. SOURCE Spisula subtruncata muscle rRNA. ORGANISM Spisula subtruncata Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Heterodonta; Veneroida; Mactracea; Mactridae; Mactrinae. REFERENCE 1 (bases 1 to 1841) AUTHORS Rice,E.L., Roddick,D. and Singh,R.K. TITLE A comparison of molluscan (bivalvia) phylogenies based upon palaeontological and molecular data JOURNAL Mol. Marine Biol. Biotechnol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1841 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1841 /organism="Spisula subtruncata" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="muscle" BASE COUNT 439 a 456 c 522 g 424 t ORIGIN BASE COUNT 439 a 456 c 522 g 424 t 4062 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac acgcc--uca ---------- -ac-acggcg ag-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|gugucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG-GAGAGG G-AGCA(U-G AGAUAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UUC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 C-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUGGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ugca ggcuu--g-c g-gu-ccgcc ucgcggcg-- ---------- 1801 ---------- -guc-acugc u-cg--uccu g-accuccac g-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cggU-UGUC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------CG C-GCCUUGGU GCUC(UUGAU 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GCC------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCU- ---------- ---------- ---------- ---------- 2521 acUACCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GCUGGU -UU-UC---- ------GG-- -A-GCUCGAG G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CAGC(-GAUA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---CUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --ucgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agacu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUG-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGUG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCCGG CC[cgg-aca 4081 ccgu-uagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCuc g--gggaucc ---------- --uu-cgc-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gag uccccguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-gcu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-GGU-g -g-c(----- 5041 --gcuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CAUGCGCU ACAAU--G-A AUGGA----- ---------- 5281 ---(------ ----)[ucag cgugcgu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cucgccu-gg ucc(gaaa-) ggauc----g ggaaacccgu -ugaac]--- ---------- 5461 -------CCC AUU-C-G--- UACU-A-GGG AUUGGGGCU( UGCAAUUC)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA GG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG CU-CCAGuu- 5641 aau-gagc-u cu-ucgga-u ugg-accc-g ugggcccgcu ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- -----ggcgg gccg-ucgg- 5761 ug-g---ccg -agaa-|gau -gcgcaaauu ga-ccg-g-g guag-AGGUC GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS T.capax 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11267 LOCUS TUXRR18S 1841 bp ss-rRNA RNA 13-AUG-1993 DEFINITION Tresus capax 18S ribosomal RNA (18S rRNA). ACCESSION L11267 KEYWORDS 18S ribosomal RNA. SOURCE Tresus capax muscle rRNA. ORGANISM Tresus capax Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Heterodonta; Veneroida; Mactracea; Mactridae. REFERENCE 1 (bases 1 to 1841) AUTHORS Rice,E.L., Roddick,D. and Singh,R.K. TITLE A comparison of molluscan (bivalvia) phylogenies based upon palaeontological and molecular data JOURNAL Mol. Marine Biol. Biotechnol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1841 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1841 /organism="Tresus capax" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="muscle" BASE COUNT 442 a 452 c 519 g 428 t ORIGIN BASE COUNT 442 a 452 c 519 g 428 t 4062 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac acgcc--uca ---------- -ac-acggcg ag-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|gugucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG-GAGAGG G-AGCA(U-G AGAUAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ugca ggcuu--g-c g-gu-ccgcc ucgcggcg-- ---------- 1801 ---------- -guc-acugc u-cg--uccu g-accuccac g-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cggU-UGUC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------CG C-GCCUUGGU GCUC(UUGAU 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GCC------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 auCGCUGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GCUGGU -UU-UC---- ------GG-- -A-GCACGAG G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CAGC(-GAUA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---CUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --ucgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agacu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGUG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCCGG CC[cgg-aca 4081 ccgu-uagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCuc g--gggaucc ---------- --uu-cgc-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gag uccccguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-gcu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-UGU-g -g-c(----- 5041 --gcuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CAUGCGCU ACAAU--G-A AUGGA----- ---------- 5281 ---(------ ----)[ucag cgugcgu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cucgccu-gg ucc(gaaa-) ggauc----g ggaaacccgu -ugaac]--- ---------- 5461 -------CCC AUU-C-G--- UACU-A-GGG AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA GG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-A-A CC-GAU--CG CU-CCAGuu- 5641 aau-gagu-u cu-ucgga-u ugg-accc-g uaggcccgcu ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- -----ggugg gcca-ucgg- 5761 ug-g---ccg -agaa-|gau -gcgcaaauu ga-ccg-g-g guag-AGGUC GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS T.nuttali 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11269 LOCUS TUXRR18SA 1841 bp ss-rRNA RNA 13-AUG-1993 DEFINITION Tresus nuttali 18S ribosomal RNA (18S rRNA). ACCESSION L11269 KEYWORDS 18S ribosomal RNA. SOURCE Tresus nuttali muscle rRNA. ORGANISM Tresus nuttali Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Heterodonta; Veneroida; Mactracea; Mactridae. REFERENCE 1 (bases 1 to 1841) AUTHORS Rice,E.L., Roddick,D. and Singh,R.K. TITLE A comparison of molluscan (bivalvia) phylogenies based upon palaeontological and molecular data JOURNAL Mol. Marine Biol. Biotechnol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1841 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1841 /organism="Tresus nuttali" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="muscle" BASE COUNT 441 a 455 c 519 g 426 t ORIGIN BASE COUNT 441 a 455 c 519 g 426 t 4062 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac acgcc--uca ---------- -ac-acggcg ag-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|gugucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG-GAGAGG G-AGCA(U-G AGAUAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ugca ggcuu--g-c g-gu-ccgcc ucgcggcg-- ---------- 1801 ---------- -guc-acugc u-cg--uccu g-accuccac g-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cggU-UGUC 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------CG C-GCCUUGGU GCUC(UUGAU 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GCC------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 auCGCUGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GCUGGU -UU-UC---- ------GG-- -A-GCUCGAG G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CAGC(-GAUA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---CUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --ucgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agacu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGUG|G CU-UAAUUUG (ACCCAA-CA )CGGG--GAA CCUCACCCGG CC[cgg-aca 4081 ccgu-uagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCuc g--gggaucc ---------- --uu-cgc-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gag uccccguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-gcu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-GGU-g -g-c(----- 5041 --gcuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CAUGCGCU ACAAU--G-A AUGGA----- ---------- 5281 ---(------ ----)[ucag cgugcgu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cucgccu-gg ucc(gaaa-) ggauc----g ggaaacccgu -ugaac]--- ---------- 5461 -------CCC AUU-C-G--- UACU-A-GGG AUUGGGGCU( UGCAAUUG)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA GG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG CU-CCAGuu- 5641 aau-gagc-u cu-ucgga-u ugg-accc-g uaggcccgcu ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- -----ggugg gcca-ucgg- 5761 ug-g---ccg -agaa-|gau -gcgcaaauu ga-ccg-g-g guag-AGGUC GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS M.edulis 5903 bp RNA RNA 11-JAN-191 DEFINITION Mytilis edulis. ACCESSION No information KEYWORDS No information. SOURCE Mytilis edulis. ORGANISM Mytilis edulis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24489 BASE COUNT 455 a 417 c 500 g 454 t 4077 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacu--uuu ---------- -ac-auagug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucuuuc -aa|augucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGAUAU G)CCA-UCCU A-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCU-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--CCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ucca ggcug--g-c g-gu-ccgac gccugucg-- ---------- 1801 ---------- -guu-acugc c-ugc-uccu g-accuaccu c-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cggu-uuuu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------UC G-CCCUUGGU GCUC(UUGAC 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GGU------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--A-UUAGA 2461 GUGUUCAA-A G--CAGGCAA ---------- ---------- ---------- ---------- 2521 -u-AUCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GCUGGU -UU-UC---- ------GG-- -A-GCUCGAG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGGGGCA UU|--CGUAU UACGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGU-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gcgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cag-g -c-agccc-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUuc g--cugaucc ---------- --cc-auuu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ucggcg-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-acu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---(------ ----)[ucag cgugucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uugcccu-ug ccu(ggaa-) agguc----g gguaacccgu -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGUAAUUC)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GG-CGUUuu- 5641 agu-gagc-g cc-ucgga-u ugg-accc-g gaaaugguug ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -----caacc guac-cggu- 5761 gug----ccg -aaaa-|gac -gcgcaaacu ug-aac-g-c cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGU~~~~~ ~~~~~~~~|| ||| // LOCUS M.trossulu 5903 bp RNA RNA 11-JAN-191 DEFINITION Mytilus trossulus. ACCESSION No information KEYWORDS No information. SOURCE Mytilus trossulus. ORGANISM Mytilus trossulus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24490 BASE COUNT 455 a 419 c 501 g 451 t 4077 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacc--uuu ---------- -ac-auagug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucuuuc -aa|augucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGAUAU G)CCA-UCCU A-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCU-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--CCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ucca ggcug--g-c g-gu-ccgac gccugucg-- ---------- 1801 ---------- -guu-acugc c-ugc-uccu g-accuaccu c-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cgg--uuuu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------UC G-CCCUUGGU GCUC(UUGAC 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GGU------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCAA ---------- ---------- ---------- ---------- 2521 -u-AUCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-ACUGGU -UU-UC---- ------GG-- -A-GCUCGAG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGGGGCA UU|--CGUAU UACGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGU-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gcgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cag-g -c-agccc-- ---------- ----ccGG(- 3661 GAAG-)CCa- -AAGUU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUuc g--ccgaucc ---------- --cc-auuu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ucggcg-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-acu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---(------ ----)[ucag cgugucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uugcccu-ug ccu(ggaa-) agguc----g gguaacccgu -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGUAAUUC)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GG-CGUUuu- 5641 agu-gagc-g cc-ucgga-u ugg-accc-g gaaaugguug ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -----caacc guac-cggu- 5761 gug----ccg -aaaa-|gac -gcgcaaacu ug-aac-g-c cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGU~~~~~ ~~~~~~~~|| ||| // LOCUS C.virginic 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X60315 LOCUS CSRSSRRNA 1816 bp ds-DNA INV 03-DEC-1991 DEFINITION C.virginica small subunit ribosomal RNA gene ACCESSION X60315 KEYWORDS ribosomal RNA; small subunit ribosomal RNA. SOURCE Crassostrea virginica DNA. ORGANISM Crassostrea virginica Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Pteriomorphia; Eupteriomorphia; Ostreoida; Ostreina; Ostreacea; Ostreidae. REFERENCE 1 (bases 1 to 1816) AUTHORS Littlewood,D.T., Ford,S.E. and Fong,D. TITLE Complete nucleotide sequence of the small subunit ribosomal RNA gene of the american oyster Crassostrea virginica (Gmelin) and a comparison with similar sequences from other bivalve molluscs JOURNAL Nucleic Acids Res. 19, 6048-6048 (1991) STANDARD full automatic COMMENT *source: stage=adult; *source: cell_type=hemocyte and sperm; *source: is_macronuclear=N; *source: is_proviral=N; *source: is_germline=N; From EMBL entry CVSSRRNA; dated 04-NOV-1991. FEATURES Location/Qualifiers rRNA 1..1816 /gene="small subunit ribosomal RNA" BASE COUNT 456 a 414 c 497 g 449 t ORIGIN BASE COUNT 456 a 414 c 497 g 449 t 4087 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auac------ ---------- ------ucuu gc-]------ 181 -----|---A CA|G-UGAAA -CCGC-GAAU GGCU-cauua aaucaguuau gguucauuag 241 augg<----- ---------- ---------- ---------- ---------- uacaa--ucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gugucuuuc -aa|augucu gc|--CCU-A UCA--ACUGU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCU-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---cuuc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AG-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC GAGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGCUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-ucca ggcug--g-c g-gu-ccacc ucguugug-- ---------- 1801 ---------- --gu---uac u-g---ccug u-ucugaccc a--accu--- -----c---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -ucgg-uugu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa a-cccuuggu GCUC--UUGA 2161 U----U-GA- ---------- ---------- -GUugcuuc- g-gg------ ---------- 2221 ---uggccga aac------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCGA ---------- ---------- ---------- ---------- 2521 ---uucgccu gccaca-aug gUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-ACACGAG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGGGGCA UU|--CGUAU GGCGGGG-UU -AGAG(GU-G AAA---)GGC U-UGGA-U-C 3061 CUCGC-CAG- A-CGGCCU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gcaau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cga-g -c-agccc-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cga-aca 4081 cugu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AA|- ---------- 4321 ------(--- --)[ccu-ac uaaauaguuc a--ccgau-- ---------- --cu-augcu 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gucggug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----caacu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------ucuu agagg]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuua-)g ccac---acg AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---(------ ----)[ucaa cagguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cuguccu-gg ccc(gaaa-) ggguc----g gguaacccgu -ugaac]--- ---------- 5461 -------cuc cuu-c-g--- ugcu-A-GGG AUUGGGGug( UGUAAUUA)U CCCC-AUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAA (-UCAUAAG- )UUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGUuu- 5641 agu-gagc-c cc-uugga-c ugg-uccc-g acg-gccggc aa-------- ---------- 5701 -------(cg cg----)--- ---------- ---------- ------uuuu cguc-gcug- 5761 gug----ccg -ggaa-|gaa -gggcaaacu gu-acu-u-u cuag-agguc gu-aaaa-G- 5821 UCGUAACAAG GU-------- -----U-U-C UGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS A.irradian 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11265 LOCUS AGCRR18S 1815 bp ss-rRNA RNA 13-AUG-1993 DEFINITION Argopecten irradians 18S ribosomal RNA (18S rRNA). ACCESSION L11265 KEYWORDS 18S ribosomal RNA. SOURCE Argopecten irradians muscle rRNA. ORGANISM Argopecten irradians Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Pteriomorphia; Eupteriomorphia; Ostreoida; Pectinina; Pectinacea; Pectinidae. REFERENCE 1 (bases 1 to 1815) AUTHORS Rice,E.L., Roddick,D. and Singh,R.K. TITLE A comparison of molluscan (bivalvia) phylogenies based upon palaeontological and molecular data JOURNAL Mol. Marine Biol. Biotechnol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1815 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1815 /organism="Argopecten irradians" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="muscle" BASE COUNT 460 a 402 c 488 g 465 t ORIGIN BASE COUNT 460 a 402 c 488 g 465 t 4088 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacu--uuu ---------- -ug-auggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacgaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucuuuc -aa|augucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG-GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCU-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--CCC UUU---AA-C GA-GUAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --aga-ucca ggcuu--g-c g-gu-ccacu ccuuggug-- ---------- 1801 ---------- -gcu-acugc u-cg--uccu g-aucuaccu c-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----C-GGUU 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------UU A-CCCUUGGU GCUC(UUGAU 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GGU------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------AUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCA- ---------- ---------- ---------- ---------- 2521 --GCUCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-ACUUGAG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UACGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGU-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAUCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gcgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agcuu-- ---------- ----acGG(- 3661 GAAA-)CCa- -AAGUU-UUU GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUuc a--ccgaucc ---------- --gu-uuu-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ucggug-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-acu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGU-g -g-c(----- 5041 --guuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---(------ ----)[ucaa cgugcuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuauccu-ug ccc(ggaa-) ggguu----g gguaacccgu -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGUAAUUC)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UC|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gagc-u cc-ucgga-u ugg-uccc-g aca-cggggg ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- -----cccuc ga-g-ucgg- 5761 ugug---ccg -aaaa-|gac -gagcaaacu ug-auu-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS C.islandic 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L11232 LOCUS CMSRR18S 1815 bp ss-rRNA RNA 30-JUN-1993 DEFINITION Chlamys islandica 18S ribosomaal RNA (18S rRNA). ACCESSION L11232 KEYWORDS 18S ribosomal RNA. SOURCE Chlamys islandica adductor muscle rRNA. ORGANISM Chlamys islandica Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Pteriomorphia; Eupteriomorphia; Ostreoida; Pectinina; Pectinacea; Pectinidae. REFERENCE 1 (bases 1 to 1815) AUTHORS Kenchington,E.L., Naidu,K.S., Roddick,D.L., Cook,D.I. and Zouros,E. TITLE The use of biochemical genetic markers to discriminate between adductor muscles of the sea scallop (Placopecten magellanicus) and the Iceland scallop (Chlamys islandica) JOURNAL Can. J. Fish. Aquat. Sci. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1815 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1815 /organism="Chlamys islandica" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="adductor muscle" BASE COUNT 464 a 402 c 486 g 463 t ORIGIN BASE COUNT 464 a 402 c 486 g 463 t 4088 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacu--uuu ---------- -ug-auggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacgaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucuuuc -aa|augucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG-GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCU-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -GCUC(---- ---uuuc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--CCC UUU---AA-C GA-GUAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --agg-ucca ggcuu--g-c g-gu-ccacu ccuuggug-- ---------- 1801 ---------- -gcu-acugc u-cg--uccu g-accuaccu c-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----C-GGUU 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------UU A-CCCUUGGU GCUC(UUGAU 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GGU------ ---------- 2221 ---GGCCGGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------AUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCA- ---------- ---------- ---------- ---------- 2521 --AUUCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-ACUUGAG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UACGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGU-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAUCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gcgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agcuu-- ---------- ----acGG(- 3661 GAAA-)CCa- -AAGUU-UUU GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUuc a--ccgaucc ---------- --gc-ucu-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ucggug-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-acu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGU-g -g-c(----- 5041 --guuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---(------ ----)[ucaa cgugcuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuauccu-ug ccc(ggaa-) ggguu----g gguaacccgu -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGUAAUUC)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagc-u cc-ucgga-u ugg-uccc-g aca-cggggg ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -----cccuc ga-g-ucgg- 5761 ugug---ccg -aaaa-|gac -gagcaaacu ug-auu-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C UGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -------~|| ||| // LOCUS P.magellan 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53899 ID PM18SR standard; RNA; INV; 1815 BP. XX AC X53899; XX DT 04-OCT-1990 (annotation) XX DE Placopecten magellanicus gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Placopecten magellanicus OC Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Pteriomorphia; OC Eupteriomorphia; Ostreoida; Pectinina; Pectinacea; Pectinidae. XX RN [1] (bases 1-1815) RA Rice L.; RT ; RL Submitted (30-JUL-1990) on tape to the EMBL Data Library by: RL Rice L., Biological Sciences Brance, Department of Fisheries & RL Oceans, Box 550, Halifax Nova Scotia, Canada B3J 2S7. XX RN [2] RA Rice L.; RT "Nucleotide sequence of the 18S ribosomal RNA gene from the RT Atlantic sea scallop Placopecten magellanicus (Gmelin, 1791)"; RL Nucleic Acids Res. 18:5551-5551(1990). XX CC *source: strain=isolate Placo-1; tissue=adductor muscle; XX FH Key From To Description FH FT RRNA 1 1815 18S ribosomal RNA XX XX SQ Sequence 1815 BP; 457 A; 407 C; 488 G; 463 T; 0 other; BASE COUNT 457 a 407 c 488 g 463 t 4088 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac auacu--uuu ---------- -ug-auggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacgaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucuuuc -aa|augucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGCUAU G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCU-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--CCC UUU---AA-C GA-GUAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --agg-ucca ggcuu--g-c g-gu-ccacu ccuuggug-- ---------- 1801 ---------- -gcu-acugc u-cg--uccu g-accuaccu c-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----c-gguu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uu a-cccuuggu gcuc(uugau 2161 u----)gag- ---------- ---------- -uguc-uc-g -ggu------ ---------- 2221 ---ggccgga ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------AUUU ACUUUG-AAA A--A-UUAGA 2461 GUGUUCAAAG C--AGGCA-- ---------- ---------- ---------- ---------- 2521 --auucgcCU GAAUAA-UG- guGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-ACUUGAG G-UAA-UGAU UAUGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UACGGUG-UU -AGAG(GU-G AAA---)UUC UUUGGA-U-C 3061 GCCGU-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAUCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gcgau-cc gcc-g-gagu ug--(----c uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-gg-cgg-g -c-agcuu-- ---------- ----acGG(- 3661 GAAA-)CCa- -aAGUU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGC-|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUuc a--ccgaUcc ---------- --gc-ucu-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ucggug-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-ACU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuua-)g ccac---acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU AGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---(------ ----)[ucaa cgugcuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuauccu-ug ccc(ggaa-) ggguu----g gguaacccgu -ugaac]--- ---------- 5461 -------cuc cuu-c-g--- uGCU-A-GGG AUUGGGGCU( UGUAAUUC)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUACCU-A CC-GAU--uG AU-UGGuuu- 5641 ggu-gagc-u cc-ucgga-u ugg-uccc-g aca-cggggg ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -----cccuc gagu-cggu- 5761 gcg----ccg -agaa-|gac -gagcaaacu ug-auu-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS L.kambeul 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X66374 ID LKSSRRN standard; DNA; INV; 1839 BP. XX AC X66374; XX DT 24-SEP-1992 (Rel. 33, Created) DT 24-SEP-1992 (Rel. 33, Last updated, Version 2) XX DE L.kambeul gene for small subunit ribosomal RNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Limicolaria kambeul OC Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; OC Stylommatophora; Achatinidae. XX RN [1] RP 1-1839 RA Winnepenninckx B.M.H.; RT ; RL Submitted (19-MAY-1992) on tape to the EMBL Data Library by: RL B.M.H. Winnepenninckx, Universiteit Antwerpen (UIA), RL Universiteitsplein 1, B 2610 Antwerpen, BELGIUM XX RN [2] RP 1-1839 RA Winnepenninckx B., Backeljau T., Van de Peer Y., Wachter R.; RT "Structure of the small ribosomal subnunit RNA of the pulmonate RT snail limicolaria kambeul and phylogenetic analysis of the RT metazoa"; RL FEBS Lett. 309:123-126(1992). XX FH Key Location/Qualifiers FH FT rRNA 1..1839 FT /product="small subunit ribosomal RNA" XX SQ Sequence 1839 BP; 444 A; 436 C; 508 G; 450 T; 1 other; BASE COUNT 444 a 436 c 508 g 450 t 4065 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------uc acacu--guc ---------- -uc-acggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- cga-gguu-- ----ccuuag 241 auga<----- ---------- ---------- ---------- ---------- --cacgaucc 301 u>ACUUGG-A UAACUGUGG( -C-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|augucu gc|--CCU-A UCA--AAUGU C-GAUGGUA- 1141 CG(-UGACAU G)CCU-ACCA U-|GUUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-AA- C--UU-ACCC -ACUCC--G( ---gca--)C 1321 GGAG-G-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--CCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --agg-cgca ggcgg--g-c g-gu-ccggc ucgcgccg-- ---------- 1801 ---------- -uuc-acugc c-cgu-uguc cuccugcccu a-ccguc--- -----ugc-- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --cgg-cucU 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------CU C-CCGCGGGU GCUC(UUCGC 2161 U----)GAG- ---------- ---------- -CGUC-CC-G -GGU------ ---------- 2221 ---GGCCGGC GC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCcc ---------- ---------- ---------- ---------- 2521 -caGCUGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUG-U -UU-UC---- ------GG-- -A-ACUGGAG G-UAA-UGAU UAACA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-AAG- A-CGAGCU-A CUGC(-GAAA )--GC|A--- UUUGUC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGC- GCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gcgau-cc gca-g-gagu ug--(----c uucga----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-ug-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG UC[cgg-aca 4081 cugu-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AU UAAAUAGUuc g--ccgguuc ---------- --cu-cgau- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------cg ccggcg-c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-acu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACG-Agu-g -g-c(----- 5041 --guuua-)g cca----acg agau-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CACACGCU ACACU--G-A AGGAA----- ---------- 5281 ---(------ ----)[ucag cguggau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---g------ 5401 ccucccu-gg ccc(gaaa-) -gguu----g ggaaacccgu -ugaau]--- ---------- 5461 -------CUC CUU-C-G--- UGCU-A-GGG AUUGGGGCU( UGUAAUUC)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGA-GAG (-UCAUAAG- )NUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A UC-GAU--UG AG-CGGuuc- 5641 agu-gagg-g cc-ucgga-u ugg-ucuc-g guc-ugguac ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -----gugcu ggca-ccgc- 5761 ugg----ccg -agaa-|gaa -gcucgaacu cg-auc-g-c uugg-AGAAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (7)-Pseudo 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (8)-Nemato 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS C.elegans 5903 bp RNA RNA 03-JAN-1986 DEFINITION Caenorhabditis elegans. ACCESSION No information KEYWORDS No information. SOURCE Caenorhabditis elegans. ORGANISM Caenorhabditis elegans. REFERENCE 1 (bases 1 to 6326) AUTHORS No information JOURNAL 2345-2364. STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X03680 Phylo:Eukaryotes,Animal,? BASE COUNT 451 a 358 c 467 g 480 t 4147 others ORIGIN 1 |--------- -----UACCU GAU(UGA)UU CU|GUCAGC- G-C-GA-UAU --GCUCAAGU 61 AAAA|-GAUU AA-GCCAUGC A-UGCUU-UG AU|------- |-------(- ---)[----- 121 ---------- --------uc au-------- ---------- -----caaug aa-]------ 181 -----|---A UU|G-CGUA- CGGCU-CAUU AGAg-caga- uau-cacc-- ----uuaucc 241 ggga<----- ---------- ---------- ---------- -------gga u------ccu 301 c>AUAUGG-A UAACUGCGG( -A-AAUA)CU GGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auccggaaa -gg|gugucu gc|--CCU-U UCA--ACUA- --GAUGGUA- 1141 GU(-UUAUUG G)ACU-ACCA U-|GGUUG-U UAC|GGGU-A A-CGGA|GAA -U-(AAGG-) 1201 GUU-CGACU- CCG|GAGAGG G-AGCC(U-U AGAAAC)GGC UACC-ACGUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-AUCC -ACUGUU-G( ---agu--)- 1321 -AUG-A-GAU -|A|GUGACU AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU AAAGACUCA- --UCC(---- ---uuuu)GG A--UG-AGUU A-UUuCAAU- 1501 ------GAGU ----UGAAUA -CAAA--UGA UUC---UU-C GA-GUAGC-- ----->AAGG 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUCC 1621 U-AGUGUA|U CUCGU--UAU UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucua---- --ggu-uacg ugccg--c-a g-uu-----c gcaauuu--- ---------- 1801 ---------- ---g-cguca a-c---ugug gucgugacuu c-uaa----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----u-uug- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cu g-gu--uuga gguu-ggguu 2161 c----gccc- ---------- ---------- -uucaacu-- -gcc------ ---------- 2221 ---agcag-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACCUUG-AAU A--AAUCAGA 2461 GUGCUCAA-u a--CAAGC-- ---------- ---------- ---------- ---------- 2521 --gcUUGCUU GAAUAG-CU- CAuCAUGGAA -------|UA -AUGAAA-CA -GGAcUucgg 2581 uUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UUUU 2821 --U-GUUGGU -Uc-U----- ------aG-- -A-ACU-GAU U-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAaa ---------- 3001 -ccGGGGGCA UU|--CGUAU CAUUACG-CG -AGAG(GU-G AAA---)UUC G-UGGA-C-C 3061 GUAGU-GAG- A-CGCCCA-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UG--ACC-GU AAACGAUGCC AUC|UC|--- 3421 --gcgau-uc gga-g-g--g u---(----- uuuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gcc-c u-gc-cga-g -g-agcua-- ---------- ----ucCG(- 3661 GAAA-)CGa- -aAGUC-uuu cGGU|-U|C- CGGGGGUAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG UC[cgg-aca 4081 ccau-uagga cugacaga(u ugaaagc)-- --ucuuucuc gauu-uggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAGCGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CcU-GC UAAaUAGuug g--cgaauc- ---------- --uu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------g guucguau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GAUA-Agc-g -g-u(----- 5041 --guuua-)g ccgc---acg AGaU-UGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGUGCU ACACU--G-G UGGAG----- ---------- 5281 ---(------ ----)[ucag cggguu---- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuuccu-au gcc(gaaa-) gguau----c gguaaaccgu -ugaaa]--- ---------- 5461 -------uuc uuc-c-a--- uGUC-C-GGG AUAGGGUAU( UGUAAUUA)U UGCCCUUA-A 5521 ACGAGG-AAU G--CCUAGUA AG-UGU-GAG (-UCAUCAG- )CUCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAU-C-C GG-GAC--uG AA-CUGauu- 5641 cga-gaag-a gu-gggga-c ugu-cgcu-u cga-gguu-- ---------- ---------- 5701 -------(ua ac----)--- ---------- ---------- --------ga cuuc-guu-- 5761 guu----gcg -gaaa-|cca -uuuuuaucg ca-uug-g-u uuga-ACCGG GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-G-C UGUAGG(UGA A)CCUGCAGC UGGAUCA--- 5881 --UCG~~~~~ ~~~~~~~~|| ||| // LOCUS S.stercora 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M84229 LOCUS STDRG18S 1766 bp ds-DNA INV 14-APR-1992 DEFINITION Strongyloides stercoralis 18S ribosomal RNA gene, complete cds. ACCESSION M84229 KEYWORDS 18S ribosomal RNA. SOURCE Strongyloides stercoralis DNA. ORGANISM Strongyloides stercoralis Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Rhabditia; Rhabditida; Rhabditina; Rhabditoidea; Strongyloididae. REFERENCE 1 (bases 1 to 1766) AUTHORS Putland,R.A., Thomas,S.M., Grove,D.I. and Johnson,A.M. TITLE Phulogenetic analysis of the 18S ribosomal RNA gene of Strongyloides stercoralis JOURNAL Unpublished (1992) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1766 /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 543 a 294 c 384 g 543 t 2 others ORIGIN BASE COUNT 543 a 294 c 384 g 543 t 4139 others ORIGIN 1 |--------- ------ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaa-auu ---------- -cauacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- -------uuu cu-----ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUAU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCC -AAUUUU-a( ---guu--)A 1321 AAAG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------GA CAACCAAAU- -AUUA(---- ---uuau)UA AU-AU-UUGG A-UUGAAAA- 1501 ------UCUU ----CAAGUU -UAAA--UmA CCU---UG-U UG-GUA---- ----->AAGG 1561 AAAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC AG-|CUUUCC 1621 A-AGUGCA|U AAAAU--GAU UGUUG-UGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuau---- --aaa-gauu -guau--a-a u-ga--gcau cuuggaug-- ---------- 1801 ---------- --uu--auuu a-a---ucau uaucaucuua u--auuu--- -----u---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -------uau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ua u-a-uuagaa auaa--uaua 2161 a----u-aa- ---------- ---------- -cuguc-acu uuga------ ---------- 2221 ---auaaauc aga------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----ggguuu aaacca-ga- -----cauu- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 --auauGUUU GUAUGG-UC- UAGCAUGGAA -------|UA -ACACUA-UA -GAAaAa--- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UUUA 2821 --G-UGUGGU -U--UC---- ------ac-- -u-uaa-uUU U-UCA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAAA ---------- 3001 --CGGGGGCA UU|--CGUAU CGCUACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUAGC-GAG- A-CGUCCU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACUAUGCC UAC|UA|--- 3421 --gaugu-au gaa-u-u-au ua--(----- guua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----uaau-u a-uu-uau-g -c-aucuu-- ---------- ----cuCG(- 3661 GAAA-)CGa- -aAGUC-uuu cGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GAAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGCAC- -CACC--AGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG GC[cgg-aca 4081 cuau-aagga uugacaga(u ugauagc)-- --ucuuucau gauu-uagug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUCG- U|GGA(uaug 4261 a-)UUUGUC- -UGG(UU-GA UU)CCGAUA- AC-GAGCGAG ACUUU-ua|- ---------- 4321 ------(--- --)[uguuau auua-aaua- u--aauuauu u-uguu---- --ua-uuuu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ----aauaua aauaauua-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----auauu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------uuaa uaaca]---- --|------- ---------- GAUU-Aau-a -g-u(----- 5041 --guuua-)a cuau---uug agag-AGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACAAU--G-U Aguga----- ---------- 5281 ---(------ ----)[ucau u-aug----- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccug--u uua(gaga-) uaaau----g gguaaacau- -ugaaa]--- ---------- 5461 -------aca uua-c-g--- uaaC-U-GGG AGUGAAAAU( UGCAAUUA)U UUUUCAUG-A 5521 ACGAGG-AAU U--CCAAGUA AA-CGU-AAG (-UCAUUAG- )CUUAC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUGC-C-C GG-AAC--uG AG-CAAUau- 5641 cca-gagg-c ag-gaaga-g aug-uaau-a aa-------- -------uu- ---------- 5701 -------(uu uaau--)u-- ---------- ---------- ---------- -----uuuu- 5761 uua----uau -uaaa-|ucc -uuccaaucg cu-guu-g-u uuga-ACCGG GC-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-U CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --UCA~~~~~ ~~~~~~~~|| ||| // LOCUS N.battus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U01230 ID NB230 standard; DNA; INV; 1758 BP. XX AC U01230; XX DT 07-JAN-1994 (Rel. 38, Created) DT 07-JAN-1994 (Rel. 38, Last updated, Version 1) XX DE Nematodirus battus Weybridge small subunit ribosomal RNA gene. XX KW . XX OS Nematodirus battus OC Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Strongylida. XX RN [1] RP 1-1758 RA Zarlenga D.S., Lichtenfels R., Stringfellow F.; RT "Cloning and sequence analysis of the small subunit ribosomal RNA RT gene from Nematodirus battus"; RL Unpublished. XX RN [2] RP 1-1758 RA Zarlenga D.S.; RT ; RL Submitted (03-SEP-1993) to the EMBL/GenBank/DDBJ databases. RL Dante S. Zarlenga, U.S. Department of Agriculture, Biosystematic RL Parasitology Lab, Beltsville, Maryland 20705 USA XX FH Key Location/Qualifiers FH FT misc_feature 1..1758 FT /note="small subunit ribosomal RNA gene" FT source 1..1758 FT /strain="Weybridge" FT /organism="Nematodirus battus" FT /germline FT /dev_stage="adult" XX SQ Sequence 1758 BP; 455 A; 359 C; 466 G; 478 T; 0 other; BASE COUNT 455 a 359 c 466 g 478 t 4145 others ORIGIN 1 |--------- -----UACCU GAU(UGA)UU CU|GUCAGC- G-C-UA-UAU --GCUCAGUU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCG-AG UU|------- |-------(- ---)[----- 121 ---------- --------ca ucuu------ ---------- ---ug-agag aa-]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AGAG-caga- ugu-cauu-- ----uauucg 241 gaaa------ ---------- ---------- ---------- ---------- ------aucc 301 u-uuUUGG-A UAACUGCGG( -C-AAUU)CU GGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aauccgaaa -aa|gugucu gc|--CCU-A UCA--ACCU- --GAUGGUA- 1141 GU(-CUAUUA G)UCU-ACCA U-|GGUUA-U UAC|GGGU-A A-CGGA|GAA -U-(AAGG-) 1201 GUU-CGACU- CCG|GAGAGG G-AGCC(U-U AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-AUCC -AAUCUU-G( ---aau--)a 1321 GAUG-A-GAU -|A|GUGACU AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa aaagaccau- --UCC(---- ----uau)GG A--ac-gguc a-uuuCAAU- 1501 ------GAGU ----UGAGCU -UAAA--CCU UUU---UU-C GA-GGAUC-- ----->AAGU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAC 1621 U-AGUGUA|A AUCGU--CAU UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucug---- ----a-guca cau-g--c-a g-ug-----g ---------- ---------- 1801 ---------- --------uu c-gcc-uuug gcguuaaucg c-uguug--- -----u---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -------gac 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ua u-uugcuggu uuuc--uauu 2161 ------gag- ---------- ---------- -guuucgauc ucuu------ ---------- 2221 ---uaguggc uagcga---- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAU A--AAUUAGA 2461 GUGCUCAG-A A--CAAGCG- ---------- ---------- ---------- ---------- 2521 ---UUUGCUU GAAUGG-UC- GAUCAUGGAA -------|UA -AUAAAA-GA -GGAcUucgg 2581 uUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 --U-AUUGGU -UC-A----- ------GG-- -A-ACU-GAA A-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAU u--------- 3001 --cGGGGGCA UU|--CGUAU CCCUGCG-CG -AGAG(GU-G AAA---)UUC G-UGGA-C-C 3061 GCAGG-GGG- A-CGCCCU-A AAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UG--ACC-GU AAACUAUGCC AUC|UA|--- 3421 --gcgau-cc gau-g-g-gg ua--(----- uauu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugcc-u u-gu-cga-g -g-agcuu-- ---------- ----ccCG(- 3661 GAAA-)CGa- -aAGUC-uuu cGGU|-U|C- CUGGGGUAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 ccg--uaaga uugacaga(u ugaaagc)-- --ucuuucuc gauu-uggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAGCGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGugc ---cuggau- ---------- --uu-uuac- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------g u-ccaguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----UA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GAUA-Agc-g -g-u(----- 5041 --guuua-)g ccgc---acg aGAU-UGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACAau--g-g aagaa----- ---------- 5281 ---(------ ----)[ucag cuggcc---- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaucca-uu acc(gaaa-) gguau----u gguaaaccgu -ugaaa]--- ---------- 5461 -------cuc uuc-c-g--- uGAC-C-GGG AUAGGGAAU( UGUAAUUA)U UUCCCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-UGU-GAG (-UCAUCAG- )CUCAC-G-C -UGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGCUGU-C-C GG-GAC--UG AG-CUGUcu- 5641 cga-gagg-a cu-gcgga-c ugc-ugua-u cga-ggcu-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- --------gg ucgc-ggu-- 5761 aug----gcg -ggaa-|aca -guucaaucg ca-aug-g-c uuga-ACCGG GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UCG----- -------~|| ||| // LOCUS H.contortu 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L04153 LOCUS HAERRNAB 1758 bp ds-DNA INV 14-APR-1993 DEFINITION Haemonchus contortus rRNA gene-associated DNA sequence. ACCESSION L04153 KEYWORDS ribosomal RNA. SOURCE Haemonchus contortus combined adult parasite DNA. ORGANISM Haemonchus contortus Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Spiruria; Spirurida; Spirurina; Filarioidea; Filariidae. REFERENCE 1 (bases 1 to 1758) AUTHORS Zarlenga,D.S., Stringfellow,F., Nobary,M. and Lichtenfels,J.R. TITLE Cloning and characterization of ribosomal RNA genes from three species of Haemonchus (Nematoda: Trichostrongyloidea) and identification of PCR primers for rapid differentiation JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers source 1..1758 /organism="Haemonchus contortus" /dev_stage="adult parasite" /sex="combined" /sequenced_mol="DNA" BASE COUNT 460 a 359 c 466 g 473 t ORIGIN BASE COUNT 460 a 359 c 466 g 473 t 4145 others ORIGIN 1 |--------- -----UACCU GAU(UGA)UU CU|GUCAGC- G-C-UA-UAU --GCUCAGUU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCG-AG UU|------- |-------(- ---)[----- 121 ---------- --------ca ucuu------ ---------- ---ugaagag aa-]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AGAG-caga- ugu-cauu-- ----uauucg 241 gaac------ ---------- ---------- ---------- ---------- -------guc 301 c-uuUUGG-A UAACUGCGG( -U-AAUU)CU GGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auuccgaaa -aa|gugucu gc|--CCU-A UCA--ACCU- --GAUGGUA- 1141 GU(-CUAUUA G)UCU-ACCA U-|GGUUA-U UAC|GGGU-A A-CGGA|GAA -U-(AAGG-) 1201 GUU-CGACU- CCG|GAGAGG G-AGCC(U-U AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-AUCC -AAUCUU-G( ---aac--)a 1321 GAUG-A-GAU -|A|GUGACU AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa aaagaccau- --UCC(---- ----uau)GG A--ac-gguc a-uuuCAAU- 1501 ------GAGU ----UGAUCA -UAAA--CCU UUU---UU-C GA-GGAUC-- ----->AAGU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAC 1621 U-AGUGUA|A AUCGU--CAU UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucug---- ----a-guua cau-g--c-a g-ug-----a ---------- ---------- 1801 ---------- --------uu c-gcc-uuug gcguuaaucg c-uguug--- -----u---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -------aac 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ua u-uugcuggu uuuc--uauu 2161 ------gag- ---------- ---------- -guuucggcu ucuu------ ---------- 2221 ---uaguggc uagcga---- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAU A--AAUUAGA 2461 GUGCUCAG-A A--CAAGCG- ---------- ---------- ---------- ---------- 2521 ---UUUGCUU GAAUGG-UC- GAUCAUGGAA -------|UA -AUAAAA-GA -GGAcUucgg 2581 uUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 --U-AUUGGU -UC-A----- ------GG-- -A-ACU-GAA A-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAU u--------- 3001 --cGGGGGCA UU|--CGUAU CCCUGCG-CG -AGAG(GU-G AAA---)UUC G-UGGA-C-C 3061 GCAGG-GGG- A-CGCCCU-A AAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UG--ACC-GU AAACUAUGCC AUC|UA|--- 3421 --gcgau-cc gau-g-g-gg ua--(----- uagu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugcc-u u-gu-cga-g -g-agcuu-- ---------- ----ccCG(- 3661 GAAA-)CGa- -aAGUC-uuu cGGU|-U|C- CUGGGGUAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 ccg--uaaga uugacaga(u ugaaagc)-- --ucuuucuc gauu-uggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAGCGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGugg ---cuggauu ---------- --uu-ug--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------ag u-ccaguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----UA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GAUA-Agc-g -g-u(----- 5041 --guuua-)g ccgc---acg aGAU-UGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACAau--g-g aagaa----- ---------- 5281 ---(------ ----)[ucag cuggcc---- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaucca-uu gcc(gaaa-) ggcau----u gguaaaccgu -ugaaa]--- ---------- 5461 -------cuc uuc-c-g--- uGAC-C-GGG AUAGGGAAU( UGUAAUUA)U UUCCCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-UGU-GAG (-UCAUCAG- )CUCAC-G-C -UGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGCUGU-C-C GG-GAC--UG AG-CUGUcu- 5641 cga-gagg-a cu-gcgga-c ugc-ugua-u cga-ggcc-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- --------gg ucgc-ggu-- 5761 aug----gcg -ggaa-|aca -guucaaucg ca-aug-g-c uuga-ACCGG GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UCG----- -------~|| ||| // LOCUS H.placei 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L04154 LOCUS HAERRNAC 1758 bp ds-DNA INV 14-APR-1993 DEFINITION Haemonchus placei rRNA gene-associated DNA sequence. ACCESSION L04154 KEYWORDS ribosomal RNA. SOURCE Haemonchus placei combined adult parasite DNA. ORGANISM Haemonchus placei Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Spiruria; Spirurida; Spirurina; Filarioidea; Filariidae. REFERENCE 1 (bases 1 to 1758) AUTHORS Zarlenga,D.S., Stringfellow,F., Nobary,M. and Lichtenfels,J.R. TITLE Cloning and characterization of ribosomal RNA genes from three species of Haemonchus (Nematoda: Trichostrongyloidea) and identification of PCR primers for rapid differentiation JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers source 1..1758 /organism="Haemonchus placei" /dev_stage="adult parasite" /sex="combined" /sequenced_mol="DNA" BASE COUNT 460 a 359 c 466 g 473 t ORIGIN BASE COUNT 460 a 359 c 466 g 473 t 4145 others ORIGIN 1 |--------- -----UACCU GAU(UGA)UU CU|GUCAGC- G-C-UA-UAU --GCUCAGUU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCG-AG UU|------- |-------(- ---)[----- 121 ---------- --------ca ucuu------ ---------- ---ugaagag aa-]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AGAG-caga- ugu-cauu-- ----uauucg 241 gaac------ ---------- ---------- ---------- ---------- -------guc 301 c-uuUUGG-A UAACUGCGG( -U-AAUU)CU GGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auuccgaaa -aa|gugucu gc|--CCU-A UCA--ACCU- --GAUGGUA- 1141 GU(-CUAUUA G)UCU-ACCA U-|GGUUA-U UAC|GGGU-A A-CGGA|GAA -U-(AAGG-) 1201 GUU-CGACU- CCG|GAGAGG G-AGCC(U-U AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-AUCC -AAUCUU-G( ---aac--)a 1321 GAUG-A-GAU -|A|GUGACU AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa aaagaccau- --UCC(---- ----uau)GG A--ac-gguc a-uuuCAAU- 1501 ------GAGU ----UGAUCA -UAAA--CCU UUU---UU-C GA-GGAUC-- ----->AAGU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAC 1621 U-AGUGUA|A AUCGU--CAU UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucug---- ----a-guua cau-g--c-a g-ug-----a ---------- ---------- 1801 ---------- --------uu c-gcc-uuug gcguuaaucg c-uguug--- -----u---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -------aac 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ua u-uugcuggu uuuc--uauu 2161 ------gag- ---------- ---------- -guuucggcu ucuu------ ---------- 2221 ---uaguggc uagcga---- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAU A--AAUUAGA 2461 GUGCUCAG-A A--CAAGCG- ---------- ---------- ---------- ---------- 2521 ---UUUGCUU GAAUGG-UC- GAUCAUGGAA -------|UA -AUAAAA-GA -GGAcUucgg 2581 uUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 --U-AUUGGU -UC-A----- ------GG-- -A-ACU-GAA A-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAU u--------- 3001 --cGGGGGCA UU|--CGUAU CCCUGCG-CG -AGAG(GU-G AAA---)UUC G-UGGA-C-C 3061 GCAGG-GGG- A-CGCCCU-A AAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UG--ACC-GU AAACUAUGCC AUC|UA|--- 3421 --gcgau-cc gau-g-g-gg ua--(----- uagu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugcc-u u-gu-cga-g -g-agcuu-- ---------- ----ccCG(- 3661 GAAA-)CGa- -aAGUC-uuu cGGU|-U|C- CUGGGGUAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 ccg--uaaga uugacaga(u ugaaagc)-- --ucuuucuc gauu-uggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAGCGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGugg ---cuggauu ---------- --uu-ug--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------ag u-ccaguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----UA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GAUA-Agc-g -g-u(----- 5041 --guuua-)g ccgc---acg aGAU-UGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACAau--g-g aagaa----- ---------- 5281 ---(------ ----)[ucag cuggcc---- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaucca-uu gcc(gaaa-) ggcau----u gguaaaccgu -ugaaa]--- ---------- 5461 -------cuc uuc-c-g--- uGAC-C-GGG AUAGGGAAU( UGUAAUUA)U UUCCCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-UGU-GAG (-UCAUCAG- )CUCAC-G-C -UGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGCUGU-C-C GG-GAC--UG AG-CUGUcu- 5641 cga-gagg-a cu-gcgga-c ugc-ugua-u cga-ggcc-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- --------gg ucgc-ggu-- 5761 aug----gcg -ggaa-|aca -guucaaucg ca-aug-g-c uuga-ACCGG GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UCG----- -------~|| ||| // LOCUS H.similis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L04152 LOCUS HAERRNAA 1758 bp ds-DNA INV 14-APR-1993 DEFINITION Haemonchus similis rRNA gene-associated DNA sequence. ACCESSION L04152 KEYWORDS ribosomal RNA. SOURCE Haemonchus similis combined adult parasite DNA. ORGANISM Haemonchus similis Eukaryota; Animalia; Eumetazoa; Nematoda; Secernentea; Spiruria; Spirurida; Spirurina; Filarioidea; Filariidae. REFERENCE 1 (bases 1 to 1758) AUTHORS Zarlenga,D.S., Stringfellow,F., Nobary,M. and Lichtenfels,J.R. TITLE Cloning and characterization of ribosomal RNA genes from three species of Haemonchus (Nematoda: Trichostrongyloidea) and identification of PCR primers for rapid differentiation JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers source 1..1758 /organism="Haemonchus similis" /dev_stage="adult parasite" /sex="combined" /sequenced_mol="DNA" BASE COUNT 460 a 359 c 466 g 473 t BASE COUNT 460 a 359 c 466 g 473 t 4145 others ORIGIN 1 |--------- -----UACCU GAU(UGA)UU CU|GUCAGC- G-C-UA-UAU --GCUCAGUU 61 UAAA|-GAUU AA-GCCAUGC A-UGUCG-AG UU|------- |-------(- ---)[----- 121 ---------- --------ca ucuu------ ---------- ---ugaagag aa-]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AGAG-caga- ugu-cauu-- ----uauucg 241 gaac------ ---------- ---------- ---------- ---------- -------guc 301 c-uuUUGG-A UAACUGCGG( -U-AAUU)CU GGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auuccgaaa -aa|gugucu gc|--CCU-A UCA--ACCU- --GAUGGUA- 1141 GU(-CUAUUA G)UCU-ACCA U-|GGUUA-U UAC|GGGU-A A-CGGA|GAA -U-(AAGG-) 1201 GUU-CGACU- CCG|GAGAGG G-AGCC(U-U AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GA- AACUU-AUCC -AAUCUU-G( ---aac--)a 1321 GAUG-A-GAU -|A|GUGACU AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa aaagaccau- --UCC(---- ----uau)GG A--ac-gguc a-uuuCAAU- 1501 ------GAGU ----UGAUCA -UAAA--CCU UUU---UU-C GA-GGAUC-- ----->AAGU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAC 1621 U-AGUGUA|A AUCGU--CAU UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucug---- ----a-guua cau-g--c-a g-ug-----a ---------- ---------- 1801 ---------- --------uu c-gcc-uuug gcguuaaucg c-uguug--- -----u---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -------aac 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ua u-uugcuggu uuuc--uauu 2161 ------gag- ---------- ---------- -guuucggcu ucuu------ ---------- 2221 ---uaguggc uagcga---- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAU A--AAUUAGA 2461 GUGCUCAG-A A--CAAGCG- ---------- ---------- ---------- ---------- 2521 ---UUUGCUU GAAUGG-UC- GAUCAUGGAA -------|UA -AUAAAA-GA -GGAcUucgg 2581 uUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 --U-AUUGGU -UC-A----- ------GG-- -A-ACU-GAA A-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAU u--------- 3001 --cGGGGGCA UU|--CGUAU CCCUGCG-CG -AGAG(GU-G AAA---)UUC G-UGGA-C-C 3061 GCAGG-GGG- A-CGCCCU-A AAGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UG--ACC-GU AAACUAUGCC AUC|UA|--- 3421 --gcgau-cc gau-g-g-gg ua--(----- uagu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugcc-u u-gu-cga-g -g-agcuu-- ---------- ----ccCG(- 3661 GAAA-)CGa- -aAGUC-uuu cGGU|-U|C- CUGGGGUAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-UGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 ccg--uaaga uugacaga(u ugaaagc)-- --ucuuucuc gauu-uggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAGCGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGugg ---cuggauu ---------- --uu-ug--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------ag u-ccaguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----UA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GAUA-Agc-g -g-u(----- 5041 --guuua-)g ccgc---acg aGAU-UGAG- CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCUGC A-CGCGCGCU ACAau--g-g aagaa----- ---------- 5281 ---(------ ----)[ucag cuggcc---- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uaucca-uu gcc(gaaa-) ggcau----u gguaaaccgu -ugaaa]--- ---------- 5461 -------cuc uuc-c-g--- uGAC-C-GGG AUAGGGAAU( UGUAAUUA)U UUCCCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-UGU-GAG (-UCAUCAG- )CUCAC-G-C -UGAUUACG- 5581 U-CCCUGCCA UU|UGUA-CA CACCGCCCGU CGCUGU-C-C GG-GAC--UG AG-CUGUcu- 5641 cga-gagg-a cu-gcgga-c ugc-ugua-u cga-ggcc-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- --------gg ucgc-ggu-- 5761 aug----gcg -ggaa-|aca -guucaaucg ca-aug-g-c uuga-ACCGG GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----A-U-C UGUAGG(UGA A)CCUGCAGA UGGAUCA--- 5881 --UCG----- -------~|| ||| // LOCUS (6)-Cnidar 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......-.. .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS A.sulcata 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53498 ID ASU18S standard; DNA; INV; 1799 BP. XX AC X53498; XX DT 19-OCT-1990 (annotation) XX DE Anemonia sulcata 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Anemonia sulcata OC Eukaryota; Animalia; Eumetazoa; Coelenterata; Cnidaria; Anthozoa; OC Zoantharia; Actiniaria. XX RN [1] (bases 1-1799) RA De Wachter R.; RT ; RL Submitted (15-JUN-1990) on tape to the EMBL Data Library by: RL De Wachter R., University of Antwerp (U.I.A.), Universiteitsplein RL 1, , B-2610 Antwerp, Belgium. XX RN [2] (bases 1-1799) RA Hendriks L., Van de Peer Y., Van Herck M., Neefs J.M., RA De Wachter R.; RT "The 18S ribosomal RNA sequence of the sea anemone Anemonia RT sulcata and its evolutionary position among other eukaryotes"; RL FEBS Lett. 269:445-449(1990). XX FH Key From To Description FH FT RRNA 1 1799 18S rRNA XX XX SQ Sequence 1799 BP; 469 A; 363 C; 483 G; 484 T; 0 other; BASE COUNT 469 a 363 c 483 g 484 t 4104 others ORIGIN 1 |--------- -----UAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aag--cacuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auug<----- ---------- ---------- ---------- ---------u acguu--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUGU C-GAUGGUA- 1141 AG(-GUGUUG G)CUU-ACCA U-|GGUUA-C AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-CU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUU(---- ---uugu)AA G-UCU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAACU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-CUGG- U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc---- --GGG-GUGG CACGG--C-C G-GU-CCGCC GCAA-GUG-- ---------- 1801 ---------- --UG--UCAC U-G---GCCG -ggccgcucu u-cu------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---uc-gcaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag a-ccgcgugu gcuc(uugac 2161 u----)gag- ---------- ---------- -ugug-cgcg ggag------ ---------- 2221 ---uugcgac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 ---AGCGCUU GAAUAC-AU- AAGCAUGGAA -------|UA -AUGGAA-UA -GGA----cu 2581 uggg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- ------GG-- -A-ACCuGAA G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU U-CGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUA UA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ca gag-a-gugu uau-(----- ugg------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c u-cu-uug-g -caccuu--- ---------- ----agGG(- 3661 GAAA-)CCa- -aAGUU-uuu gGGU|-U|U- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUua c----gcc-- cau------- --cg-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------aug -ggcaacu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guu-g -g-u(----- 5041 --guuua-)a ccaa---agu cagG-AAGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGAUG----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -cuccuu--g gcc(gaaa-) ggucu----g gguaaucuuc -ucaaa]--- ---------- 5461 -------CAU CGU-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGuuu- 5641 agu-gagg-a cu-ccuga-u ugg-cgcc-g cgc-cccg-- ---------- ---------- 5701 -------(gc ca----)--- ---------- ---------- ------cgga gcag-cgga- 5761 cug----ccg -agaa-|guu -guucaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS A.kurogane 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z21671 ID AK18SRNAA standard; RNA; INV; 1796 BP. XX AC Z21671; XX DT 14-FEB-1993 (Rel. 34, Created) DT 19-JUL-1993 (Rel. 36, Last updated, Version 2) XX DE A.kurogane 18S ribosomal RNA gene. XX KW 18S ribosomal RNA; 18S rRNA gene. XX OS Anthopleura kurogane OC Eukaryota; Animalia; Eumetazoa; Coelenterata; Cnidaria; Anthozoa; OC Zoantharia; Actiniaria; Actiniidae. XX RN [1] RC (sites) RA Kim W., Song J., Kim E., Kim J.; RT "The 18S ribosomal RNA gene of an anthozoan Anthopleura kurogane: RT a comparison with Anemonia sulcata gene"; RL Unpublished. XX RN [2] RP 1-1796 RA Kim W.; RT ; RL Submitted (10-FEB-1993) on tape to the EMBL Data Library by: RL Kim W., "Seoul National University", "Molecular Biology", RL "Shin-Lim-Dong, Kwan-Ak-Gu", "Seoul", "Korea", "151-742" XX FH Key Location/Qualifiers FH FT source 1..1796 FT /organism="Anthopleura kurogane" FT rRNA 1..1796 FT /product="18S ribosomal DNA" FT /citation=[1] FT misc_feature 1..19 FT /function="5'-terminal region of 18S rDNA and PCR primer FT sequences" FT /citation=[1] FT misc_feature 1777..1796 FT /function="3'-terminal region of 18S rDNA and PCR primer FT sequences" FT /citation=[1] XX SQ Sequence 1796 BP; 471 A; 359 C; 482 G; 484 T; 0 other; BASE COUNT 471 a 359 c 482 g 484 t 4107 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aag--cacuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 auug<----- ---------- ---------- ---------- ---------u acguu--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUGU C-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUA-C AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUU(---- ---uucu)AA G-UCU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAACU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc---- --ggg-gugg --gcg--c-c g-gu-ccgcc gcaa-gug-- ---------- 1801 ---------- --ug--ucac u-g---gccg -ggccgcucu u-cc------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---uc-gcaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag a-cugcgugu gcuc(uugac 2161 u----)gag- ---------- ---------- -ugugcgcag guac------ ---------- 2221 ---uugcgac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 ---AGCGCUU GAAUAC-AU- AAGCAUGGAA -------|UA -AUGGAA-UA -GGA----cu 2581 u-gg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- guUC|-UAUU 2821 -UU-GUUGGU -UU-CGu--- ------GG-- -A-ACC-GAA G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ca gag-a-gugu uau-(----- ugg------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c u-cu-uug-g -caccuu--- ---------- -----aug(- 3661 gaaa-)cca- -aaguu-uuu gGGU|-U|C- CGGGG-AAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|--- 4021 GGCAUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUa -----cguc- ---gu----- --cu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------acg -ggcggcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guu-g -g-u(----- 5041 --guuua-)a ccaa---agu cagg-AAGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG--CCGG A-CGCGCGCU ACACU--G-A CGAUG----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -cuccuu--g gcc(gaaa-) ggucu----g gguaaucuua -ugaaa]--- ---------- 5461 -------cau cgu-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gagg-a cu-ccuga-u ugg-cgcc-g cgc-cccg-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ------cgga gcag-cgga- 5761 aug----ccg -aaaa-|guu -guucaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA----- -------~|| ||| // LOCUS T.cystopho 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10829 LOCUS TDLSSRRNA 1802 bp ss-rRNA RNA 11-FEB-1993 DEFINITION Tripedalia cystophora 16S-like small subunit ribosomal RNA. ACCESSION L10829 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Tripedalia cystophora rRNA. ORGANISM Tripedalia cystophora Eukaryota; Animalia; Eumetazoa; Cnidaria; Cubozoa; Cubomedusae; Carybdeidae. REFERENCE 1 (bases 1 to 1802) AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi JOURNAL Science (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1802 /product="small subunit ribosomal RNA" BASE COUNT 486 a 362 c 464 g 490 t ORIGIN BASE COUNT 486 a 362 c 464 g 490 t 4101 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aag--cacuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uacuug 241 aucg<----- ---------- ---------- ---------- ---------- ua--u--ccu 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auaucu gc|--CCU-A UCA--ACUGU C-GAUGGUA- 1141 AG(-GUAGUG G)CUU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-CU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUGGG- -GCC-(---- --uuucu)-g g-ucu-CAUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc---- --ggg-uugg aguug--a-c g-gu-cugcc gcaa-ggu-- ---------- 1801 ---------- -aug-uuacu g-ucc-acuc uguccuuc-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --uuc-gcaa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gg a-cuucacau aucc(uuaac 2161 u----)ggc- ---------- ---------- -ugug-ugua ggau------ ---------- 2221 ---uugcgac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAAGCAu ---------- ---------- ---------- ---------- 2521 --acuagcuU GAAUAC-AU- GAGCAUGGAA -------|UA -AUGGAA-CA -GGA----cu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-CGUU 2821 -UU-GUUGGU -UU-CC---- ------AG-- -G-ACC-GAC G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ca gcg-g-gcgu uau-(----- ugu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-cg-uug-g -caccuu--- ---------- ----auGG(- 3661 GAAA-)CCc- -aaGUU-Uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUA c----gcgau u--------- --cu-ug--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------aau -cgugguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUU-G -g-u(----- 5041 --guuua-)a ccaa---agu cagg-AAGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGAUG----- ---------- 5281 ---(------ ----)[guag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 gacccuu--c acc(ggaa-) ggugu----g gguaau-cuu uugaaa]--- ---------- 5461 -------cau cgu-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gagg-a au-ccgga-u ugg-cagc-c cucuggucg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -------cgg ccua-uggg- 5761 uua----ccg -agaa-|gcu -uuucaaacc cg-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-Ctenop 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS B.cucumis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D15068 LOCUS BER18SRD3 1676 bp ds-DNA INV 05-JAN-1994 DEFINITION Beroe cucumis gene for 18S rRNA. ACCESSION D15068 KEYWORDS 18S rRNA. SOURCE Beroe cucumis DNA. ORGANISM Beroe cucumis Eukaryota; Animalia; Eumetazoa; Ctenophora; Atentaculata; Beroida; Beroidae. REFERENCE 1 (bases 1 to 1676) AUTHORS Kobayashi,M. JOURNAL Unpublished (1993) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Kobayashi,M., Takahashi,M., Wada,H. and Satoh,N. TITLE Molecular phylogeny inferred from sequences of small subunit ribosomal DNA, supports the monophyly of the metazoa JOURNAL Zool. Sci. 10, 827-833 (1993) STANDARD full automatic COMMENT Submitted (19-APR-1993) to DDBJ by: Miyuki Takahashi Department of Biology Faculty of Science Kagoshima University Kagoshima 890 Japan Phone: 0992-54-7141. FEATURES Location/Qualifiers source 1..1676 /organism="Beroe cucumis" /sequenced_mol="DNA" BASE COUNT 444 a 343 c 437 g 452 t ORIGIN BASE COUNT 444 a 343 c 437 g 452 t 4227 others ORIGIN 1 |--------- ------nnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nACAUGC AuUGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacu----u ---------- uuauacggug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguc-- ----uauuug 241 auug<----- ---------- ---------- ---------- ---------- -ugcccuuac 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -ga|guuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUA-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(C-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa cguugcagg- -cgcc(---- ---aau-)gg cu-uc-ugca g-ucgGAAU- 1501 ------GAGU ----ACAAUA -UAAC--ACC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AU-AA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucggaa cc-gg-ccga uuggu--ccg uccucuggau c--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 --guguacug aucggucugu ucuucuucgc gaagaccacg u--------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --gugcccuu 2161 ----aacug- ---------- ---------- -ggugggcgu ggga------ ---------- 2221 ---uucgcga c--------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -----GUUUA CUUUG-AAAA --AAUUAGAG 2461 UGUUCAA-AG -C-AGGCAUU ---------- ---------- ---------- ---------- 2521 ----cGCUUG AAUAUC-U-C AGCAUGGAA| -------UA- AUAGAA-UAG -GAcuUuggu 2581 -c-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---|-uuAUU 2821 -UU-GUUGGU -UU-CC---- ---------- gagaccg-AA G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cagu ---------- 3001 --UGGGGG-A UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-u 3061 ua-ga-aAG- A-CGAACU-U CUGC(-GAA- )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGAGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC CA--ACC-AU AAACGAUGCC GUC|UG|--- 3421 --cggau-cg gag-g-u-cg cu--(----c acauaa---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-cu-ucg-g -c-acgcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGAC-uuc GGGU|-U|C- CGGGGGGAGU AU--GU-UC( --GCAA-)-G 3721 AUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|--G 4021 AACCUGCG|G -U-UAAUUUG (ACUCAA--- )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuga c---acgguu a-------uu u--------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uaa ccgugguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ca-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUC-g -c-u(----- 5041 ---uucaa)a gcga-u-gga aguU-UGAGg CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCAC G-CGCG--UU ACACU--g-a ugaag----- ---------- 5281 ---(------ ----)[ccag ggaguauauc g--------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ccu-uc acc(gaaa-) ggugc----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuu uau-c-g--- UGCU-G-GGG AUAGACCCU( UGCAAUUA)U UGGUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CAC-GAG (-UCAUCAA- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CAC-GCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gaga-u cu-cggga-u ugc-gaug-c cgugcc---- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------g gaau-ggug- 5761 ccg----ccg -agaa-|cuu -gcucaaaca ug-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnn---- 5881 --nnn----- -------~|| ||| // LOCUS M.leidyi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10826 LOCUS MNESSRRNA 1800 bp ss-rRNA RNA 11-FEB-1993 DEFINITION Mnemiopsis leidyi 16S-like small subunit ribosomal RNA. ACCESSION L10826 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Mnemiopsis leidyi rRNA. ORGANISM Mnemiopsis leidyi Eukaryota; Animalia; Eumetazoa; Ctenophora; Tentaculata; Labata. REFERENCE 1 (bases 1 to 1800) AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi JOURNAL Science (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1800 /product="small subunit ribosomal RNA" BASE COUNT 478 a 372 c 467 g 477 t 6 others ORIGIN BASE COUNT 478 a 372 c 467 g 477 t 4109 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuu--uu ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ARAU-cagu- uau-cguc-- ----uauuug 241 auug<----- ---------- ---------- ---------- ---------u gcccu--uac 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -ga|guuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUGA-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(C-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGU-UGCAG- -gcgc(---- --caacg)gc --uuc-ugca g-uCGGAAU- 1501 ------GAGU ----ACAAUA -UAAC--ACC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc---- --gga-accg gccga--uug g-uccguccu cugg-auc-- ---------- 1801 ---------- -gug-uacug a-ucg-gucu guucuuc--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --uuc-gcga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag a-ccgcgugu gccc(uuaac 2161 u----)ggg- ---------- ---------- -uggg-cgyg ggau------ ---------- 2221 ---ucgcgac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUR-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCA- ---------- ---------- ---------- ---------- 2521 ---GUCGCUY GAAUAU-CU- CAGCAUGGAA -------|UA -AUAGAA-UA -GGA----cu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-uaUU 2821 -UU-GUUGGU -UU-CC---- ------GA-- -G-ACC-GAA G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGAGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC CA--ACC-AU AAACGAUGCC GUC|UG|--- 3421 --cggau-cg gag-g-u-cg cu--(----c aauuaa---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-cu-ucg-g -c-acgcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -aaGAC-Uuc GGGU|-U|C- CGGGGGGAGU AU--GU-UC( --GCAA-)GA 3721 AUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G UU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-Aa|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUGA ---cacgguu c--------- --uu-u---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gaa ccguggcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ca-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)a ccga-uggAA GUuu-GAGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCAC A-CGCGCGUU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------a 5401 ucgccuu--c acc(ggaa-) ggugc----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuu cau-c-g--- UGCU-G-GGG AUAGACCAU( UGCAAUUA)U UGGUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CAC-GAG (-UCAUCAA- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gaga-u cu-cggga-u ugg-cgac-g ccaugcy--- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- ---------g gcac-ggcg- 5761 ccg----ccg -agaa-|cuu -gcucaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Placoz 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS T.adhaeren 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10828 LOCUS TRXSSRRNA 1787 bp ss-rRNA RNA 11-FEB-1993 DEFINITION Trichoplax adhaerens 16S-like small subunit ribosomal RNA. ACCESSION L10828 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Trichoplax adhaerens rRNA. ORGANISM Trichoplax adhaerens Eukaryota; Animalia; Placozoa. REFERENCE 1 (bases 1 to 1787) AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi JOURNAL Science (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1787 /product="small subunit ribosomal RNA" BASE COUNT 486 a 340 c 463 g 497 t 1 others ORIGIN BASE COUNT 486 a 340 c 463 g 497 t 4117 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcac--uu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 aucg<----- ---------- ---------- ---------- ---------u acau---uac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|guuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUA-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GG- CAAUU-ACCC -AAUCC--G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- --GCC(---- ---aucu)GG C--UU-CGUA A-UCGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc---- --gga-auga aucug--a-c g-gu-ccgcu aac--ggu-- ---------- 1801 ---------- --ga--guac u-g---gaug -auuuguucu u-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --uuc-uuga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gg g-cugcauau gcuc(uuaau 2161 u----)gag- ---------- ---------- -ugug-ugua ggac------ ---------- 2221 ---uugagac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UUUU ACUGUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 ---auCGCUU GAAUAC-CU- GAGCAUGGAA -------|UA -AUAAAA-UA -GGA----cu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-uaUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-ACC-GAA G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAC UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UUC UA--ACC-AU AAACGA-GCC GUC|UA|--- 3421 --gggau-ca gug-g-gugu uau-(----- uuu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-u c-ca-uug-g -caccuu--- ---------- ----aaGG(- 3661 GAAA-)CCa- -aAGAU-uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 CCAUGGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCU-AU|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUua g----ucguu c--------- --ua-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------g aacacgcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Auu-g -g-c(----- 5041 --guuua-)g ccaa---agu AAGU-AGGG- CCAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[gcag agagucc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -u-gcua--c acu(ggga-) ggugc----g gcuaau-cuu -ucaaa]--- ---------- 5461 -------cuu cau-c-g--- UGCU-G-GGG AUAGACCCU( UGUAAUUA)U UGGUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-ACU (-GCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG GA-UGGuuu- 5641 agu-gagg-u cu-ucgga-u ugg-ugau-g gcgugacu-- ---------- ---------- 5701 -------(uu ac----)--- ---------- ---------- -------ggu ugug-ccaa- 5761 uua----ucg -agaa-|guu -gaucaaacu ug-auc-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C YGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Tricho.sp. 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z22783 ID TS18SRNAA standard; DNA; INV; 1787 BP. XX AC Z22783; XX DT 01-JUL-1993 (Rel. 36, Created) DT 01-JUL-1993 (Rel. 36, Last updated, Version 2) XX DE Trichoplax sp. 18S rRNA gene XX KW 18S ribosomal RNA; 18S rRNA gene. XX OS Trichoplax sp. OC Eukaryota; Animalia; Placozoa. XX RN [1] RP 1-1787 RA Vladychenskaya N.S., Alyoshin V.V., Kedrova O.S., Poltaraus A.B., RA Okstein I.L., Petrov N.B.; RT "PCR cloning and sequencing of the 18S rRNA gene of a placozoan, RT Trichoplax sp."; RL Unpublished. XX RN [2] RP 1-1787 RA Petrov N.; RT ; RL Submitted (21-MAY-1993) on tape to the EMBL Data Library by: RL Petrov N., A.N.Belozersky Institute of Physico-Chemical Biology, RL Moscow, Russia. XX FH Key Location/Qualifiers FH FT source 1..1787 FT /organism="Trichoplax sp." FT rRNA 1..1787 FT /product="18S ribosomal RNA" FT /gene="18S rRNA" FT misc_feature 1..21 FT /note="PCR amplification primer at the 5'end" FT misc_feature complement(1764..1787) FT /note="PCR amplification primer at the 3'end" XX SQ Sequence 1787 BP; 489 A; 338 C; 462 G; 498 T; 0 other; BASE COUNT 489 a 338 c 462 g 498 t 4116 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-gccaugc a-ugucu-aa gu|------- |-------(- ---)[----- 121 ---------- --------au aag--cacuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 aucg<----- ---------- ---------- ---------- ---------- uacau--uac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|guuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUA-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCC--G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -Gcc-(---- ---aucu)-g g-cuu-CGUA A-UCGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc---- --gga-auga aucug--a-c g-gu-ccgcc uaac-ggu-- ---------- 1801 ---------- -gag-uacug g-aug-auuu guucuucu-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---uc-uuga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gg g-cugcauau gcuc(uuaau 2161 u----)gag- ---------- ---------- -ugug-ugua ggac------ ---------- 2221 ---uuaagac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UUUU ACUGUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 ---aucgcuU GAAUAC-CU- GAGCAUGGAA -------|UA -AUAAAA-UA -GGA----cu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-ACC-GAA G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|cGCGUAC UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UUC UA--ACC-AU AAACGAUGCC GUC|UA|--- 3421 --gggau-ca gug-g-gugu uau-(----- uuu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-u c-ca-uug-g -aaccuu--- ---------- ----aaGG(- 3661 GAAA-)CCa- -aaGAU-Uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCU-AU|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUUA c----guguu c--------- --ua-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gaa --cacgcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AUU-G -g-c(----- 5041 --guuua-)g ccaa---agu aagu-AGGG- CCAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCGAC ---GCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[gcag agagucc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ugcua--c acu(ggga-) ggugc----g gcuaau-cuu -ucaaa]--- ---------- 5461 -------cuu cau-c-g--- UGCU-G-GGG AUAGACCCU( UGUAAUUA)U UGGUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCC-U -GCUAC-U-A CC-GAU--UG GA-UGGUuu- 5641 agu-gagg-u cu-ucgga-u ugg-ugau-g gcgugacu-- ---------- ---------- 5701 -------(uu ac----)--- ---------- ---------- -------ggu ugug-ccaa- 5761 uua----ucg -agaa-|guu -gaucaaacu ug-AUC-A-U CUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (5)-Porife 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS S.ciliata 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10827 LOCUS SYHSSRRNA 1807 bp ss-rRNA RNA 11-FEB-1993 DEFINITION Scypha ciliata 16S-like small subunit ribosomal RNA. ACCESSION L10827 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Scypha ciliata rRNA. ORGANISM Scypha ciliata Eukaryota; Animalia; Metazoa; Parazoa; Porifera; Calcarea; Syconosa; Heterocoelidae. REFERENCE 1 (bases 1 to 1807) AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi JOURNAL Science (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1807 /product="small subunit ribosomal RNA" BASE COUNT 482 a 353 c 472 g 496 t 4 others ORIGIN BASE COUNT 482 a 353 c 472 g 496 t 4100 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcguucuu ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ugacu--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gacucauac -aa|auaucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG G)CUU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGA|GAA -U-(UAGR-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -Acuc(---- ---uaac)ga g-ucu-UGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc---- --gga-gcgg agcuc--acg g-uccgccuu uucg-ggu-- ---------- 1801 ---------- -gug-cacug u-gcu-guuc uguucuuc-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --uuc-ucgu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gg a-gcgugugu gcuc(uucau 2161 u----)gag- ---------- ---------- -ugug-cacg uaac------ ---------- 2221 ---ucgggac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 ---uuggcuU GAAURC-AU- UAGCAUGGAA -------|UA -AUGAAA-UA -GGA----cu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-ACC-AAG G-UAA-UGAC YAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gug-g-augu uau-(----- uaa------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-u c-ca-ucg-g -caccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aaGUU-Uuu GGGU|-U|C- CGGGGGGAGU AU--AA-UC( --GCAA-)GA 3721 UCG-GAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUA c----gcgau u--------- --cu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------aau -cgcggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUU-G -g-u(----- 5041 --guuua-)a ccga-uggaa guuu-GAGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccuu--c acc(gaua-) ggugu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuu cau-c-g--- UGCU-G-GGG AUAGACCAU( UGCAAUUA)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gaga-u cu-ucgga-u ugc-uggc-c cggcggc--- ---------- ---------- 5701 -------(cu ugu---)--- ---------- ---------- --------gu ugcc-ggac- 5761 aca----gcg -agaa-|guu -gaucaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Scyp.lingu 5903 bp RNA RNA 12-NOV-1991 DEFINITION Scypha lingua. ACCESSION No information KEYWORDS No information. SOURCE Scypha lingua. ORGANISM Scypha lingua. REFERENCE 1 (bases 1 to 6326) AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an JOURNAL Science, in press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10827 title line 2:unexpected evolutionary link with fungi BASE COUNT 482 a 354 c 473 g 496 t 4098 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcguucuu ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- ugacu--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gacucauac -aa|auaucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG G)CUU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGA|GAA -U-(UAGR-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCAGG- -Acuc(---- ---uaac)ga g-ucu-UGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc---- --gga-gcgg agcuc--acg g-uccgccuu uucg-ggu-- ---------- 1801 ---------- -gug-cacug u-gcu-guuc uguucuuc-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --uuc-ucgu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gg a-gcgugugu gcuc(uucau 2161 u----)gag- ---------- ---------- -ugug-cacg uaac------ ---------- 2221 ---ucgggac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCC- ---------- ---------- ---------- ---------- 2521 ---uuggcuU GAAURC-AU- UAGCAUGGAA -------|UA -AUGAAA-UA -GGA----cu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-ACC-AAG G-UAA-UGAC YAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gug-g-augu uau-(----- uaa------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-u c-ca-ucg-g -caccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aaGUU-Uuu GGGU|-U|C- CGGGGGGAGU AU--AA-UC( --GCAA-)GA 3721 UCG-GAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUA c----gcgau u--------- --cu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------aau -cgcggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUU-G -g-u(----- 5041 --guuua-)a ccga-uggaa guuu-GAGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAG----- ---------- 5281 ---(------ ----)[ucag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccuu--c acc(gaua-) ggugu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuu cau-c-g--- UGCU-G-GGG AUAGACCAU( UGCAAUUA)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gaga-u cu-ucgga-u ugc-uggc-c cggcggc--- ---------- ---------- 5701 -------(cu ugu---)--- ---------- ---------- --------gu ugcc-ggac- 5761 aca----gcg -agaa-|guu -gaucaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --Agc~~~~~ ~~~~~~~~|| ||| // LOCUS M.prolifer 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10825 LOCUS MCISSRRNA 1810 bp ss-rRNA RNA 11-FEB-1993 DEFINITION Microciona prolifera 16S-like small subunit ribosomal RNA. ACCESSION L10825 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Microciona prolifera rRNA. ORGANISM Microciona prolifera Eukaryota; Animalia; Metazoa; Parazoa; Porifera; Demospongiae; Poecilosclerina; Microcionidae. REFERENCE 1 (bases 1 to 1810) AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi JOURNAL Science (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1810 /product="small subunit ribosomal RNA" BASE COUNT 461 a 389 c 499 g 459 t 2 others ORIGIN BASE COUNT 461 a 389 c 499 g 459 t 4095 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgcuuau ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- uuucu--ugc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-GUAGUG G)CCU-ACCA U-|GGUUG-C AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -Gcua(---- ---augu)-a g-ucu-GGCA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc---- --ggg-gcgg ccugg--cug g-uc--cguc gcga-gac-- ---------- 1801 ---------- -gag-cacug g-uca-gccg cccuu----- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -ccuc-ucga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa g-ccccgacu gcuc(uucac 2161 u----gcag- ---------- ---------- -uggu-cggg uagu------ ---------- 2221 ---ucgggac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-G G--CAGGCU- ---------- ---------- ---------- ---------- 2521 ---cucgccU GAAUAC-AU- UAGCAUGGAA -------|UA -AUGGAA-GA -GGA----cc 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-UAUU 2821 -UU-GUUGGU -UU-CU---- ------GG-- -G-ACC-GAA G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-CGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gug-g-augu uag-(----- cgu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---uugac-u c-ca-ucg-g -caccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aaGUC-Uuu GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUCC u----gccau u--------- --cc-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------aau -ggcagcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-ACU-G -g-c(----- 5041 --uccgaa)g ccag-uggaa guuu-GAGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ucag cgagcau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gaccua--c gcc(gaua-) ggugc----g gggaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-g--- UGCU-G-GGG AUUGAUUUU( UGAAAUUC)U UGAUCAUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAGCRG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuu- 5641 agu-gagg-a gu-cugga-u ucc-cgcc-g cgccucyca- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- -----uggga ggag-ucgg- 5761 aug----ggg -agaa-|guu -cuccuaacu ga-UUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS (3)-Rhodop 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (4)-Bangia 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS B.atropu.1 5903 bp RNA RNA 10-OCT-1994 DEFINITION Bangia atropurpurea.; PCR identification; group I intron; group I self-splicing intron; ribosomal RNA; ribosomal RNA small subunit. ACCESSION L36066 KEYWORDS PCR identification; group I intron; group I self-splicing intron; ribosomal RNA; ribosomal RNA small subunit. SOURCE Bangia atropurpurea. ORGANISM Bangia atropurpurea. REFERENCE 1 (bases 1 to 2863) AUTHORS Singh,R.K., Gutell,R.R. and Ragan,M.A. Oliveira,M.C., Kurniawan,J., Bird,C.J., Rice,E.L., Murphy,C.A., TITLE Rhodophyta) based on nuclear small-subunit ribosomal RNA gene sequences An investigation of order Bangiales (Bangiophycidae, JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L36066 Robin, I think you're making an alignment with an Ichthyophonus sequence in it. Could you kindly add in this one too? It's a real Bangia -- the "Bangia atropurpurea" is sent earlier (clone 12) turned out to be a diatom. We have another Bangia atropurpurea too (clone 14) which is a unicellular green alga. Isn't field-collected material fun?? Anyway, this is the real thing, and it alignes quite easily with the Porphyra species (I aligned it roughly by eye to make the provisional trees -- there weren't too many ambiguities). Many thanks, Mark Bangia atropurpurea clone 1-2 ("it's the real thing") BASE COUNT 461 a 392 c 497 g 476 t 4077 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UCA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccu-u gugcc----- 1801 ---------- ------a-g- ugggag-uc- -------ugu cuccuu-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cgg--- uguguagaga 2161 (cuug----- ---------- ---------- ---)ucucug cgcg------ ---------- 2221 ---uuu---a ccugcgggcc ggcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-GA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------AGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUCUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gg ca--(-cuac uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg acc(ggaa-) ggccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgu-ggcu- ggug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.atropu.2 5903 bp RNA RNA 05-NOV-1996 DEFINITION Bangia atropurpurea.; 18S ribosomal RNA. ACCESSION D88387 KEYWORDS 18S ribosomal RNA. SOURCE Bangia atropurpurea. ORGANISM Bangia atropurpurea. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (14-OCT-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, STANDARD No information REFERENCE 2 (bases 1 to 3004) AUTHORS Shimomura,K., Yamazaki,S., Miyata,T. and Saga,N. TITLE Phylogenetic position of Bangia atropurpurea (Bangiales, Rhodophyta) based on the 18S rDNA sequence JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D88387 BASE COUNT 466 a 384 c 492 g 490 t 4071 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GGCU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACCUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUCGUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA AU-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAGG)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---auc--)C 1321 GGGGGA-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGAG- -GCCA(---- ---uuua)CG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-gga g-cgcu-ccc acuggg--c- cg-gc(uucu ---)gccg-u uguuc----- 1801 ---------- ------ugg- uggggg-uuc gu-------- cuccua-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcagcgg- uguuggggcc 2161 (uuaauu--- ---------- ---------- ---)gucucc agca------ ---------- 2221 ---ccgauca acugcgggcc gguc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAGA--A 2461 AGGAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA CGCC-U-UGA AUUUGU-GAG CAUGGAA|UA -AUGGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------UGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gc uacu(----a uuua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augaccu c-gu-cag-c -a-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -GAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 aaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagaug u--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cguau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuua------ 5401 cagcccu-gg gcc(ggaa-) guccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------cug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUU-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-U -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ugu-ccgga- ucgu-ggcu- agug-ugaug gaa------- ---------- 5701 -------(cu ug----)--- ---------- ---------- -------uuc caga-gca-- 5761 cgugcu-uug -agaa-|gug -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAG~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.AK 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Alaska/AK). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Alaska/AK). ORGANISM Bangia sp. (Alaska/AK). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043355 LOCUS AF043355 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043355 NID g3335113 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Alaska, Greenland and Northwest Territories" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 456 a 383 c 486 g 472 t BASE COUNT 456 a 383 c 486 g 472 t 4106 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccu-u gugcc----- 1801 ---------- ------a-g- ugggag-uu- -------ugu cuccuu-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cgg--- uguguagaga 2161 (cuug----- ---------- ---------- ---)ucucug cgcg------ ---------- 2221 ---uuu---a ccugcgggcc ggcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------AGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gg ca--(-cuac uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg acc(ggaa-) ggccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-uccgga- ucgu-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.GLD 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Greenland/GLD). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Greenland/GLD). ORGANISM Bangia sp. (Greenland/GLD). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043355 LOCUS AF043355 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043355 NID g3335113 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Alaska, Greenland and Northwest Territories" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 456 a 383 c 486 g 472 t BASE COUNT 456 a 383 c 486 g 472 t 4106 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccu-u gugcc----- 1801 ---------- ------a-g- ugggag-uu- -------ugu cuccuu-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cgg--- uguguagaga 2161 (cuug----- ---------- ---------- ---)ucucug cgcg------ ---------- 2221 ---uuu---a ccugcgggcc ggcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------AGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gg ca--(-cuac uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg acc(ggaa-) ggccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-uccgga- ucgu-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NH 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (New Hampshire/NH). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (New Hampshire/NH). ORGANISM Bangia sp. (New Hampshire/NH). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043353 LOCUS AF043353 1796 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043353 NID g3335111 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1796) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1796) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1796 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from New Hampshire" rRNA 1..>1796 /product="18S ribosomal RNA" BASE COUNT 456 a 380 c 486 g 472 t 2 others BASE COUNT 456 a 380 c 486 g 472 t 4109 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAYU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGY UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccu-u gugcc----- 1801 ---------- ------a-g- ugggag-uu- -------ugu cuccuu-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cgg--- uguguagaga 2161 (cuug----- ---------- ---------- ---)ucucug cgcg------ ---------- 2221 ---uuu---a ccugcgggcc ggcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------AGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gg ca--(-cuac uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG AC-UC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg acc(ggaa-) ggccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-uccgga- ucgu-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NWT 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Northwest Territories/NWT). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Northwest Territories/NWT). ORGANISM Bangia sp. (Northwest Territories/NWT). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043355 LOCUS AF043355 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043355 NID g3335113 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Alaska, Greenland and Northwest Territories" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 456 a 383 c 486 g 472 t BASE COUNT 456 a 383 c 486 g 472 t 4106 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccu-u gugcc----- 1801 ---------- ------a-g- ugggag-uu- -------ugu cuccuu-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cgg--- uguguagaga 2161 (cuug----- ---------- ---------- ---)ucucug cgcg------ ---------- 2221 ---uuu---a ccugcgggcc ggcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------AGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gg ca--(-cuac uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg acc(ggaa-) ggccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-uccgga- ucgu-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.RI 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Rhode Island/RI). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Rhode Island/RI). ORGANISM Bangia sp. (Rhode Island/RI). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043354 LOCUS AF043354 1797 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043354 NID g3335112 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1797) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1797 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Rhode Island" rRNA 1..>1797 /product="18S ribosomal RNA" BASE COUNT 455 a 380 c 484 g 473 t 5 others BASE COUNT 455 a 380 c 484 g 473 t 4111 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUUU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-gguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-Y GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-KC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAKUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccu-u gugcc----- 1801 ---------- ------a-g- ugggag-uu- -------ugu cuccuu-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cgg--- uguguagaga 2161 (cuug----- ---------- ---------- ---)ucucug cgcg------ ---------- 2221 ---uuu---a ccugcgggcc ggcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------AGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gg ca--(-cuac uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-KU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg acc(ggaa-) ggccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-uccgga- ucgu-ggyu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.B12 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (England River Thames/BI12). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (England River Thames/BI12). ORGANISM Bangia sp. (England River Thames/BI12). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 4100 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacua-cuu ---------- uauac-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAC-cagu- uau-aguu-- ----ccuuug 241 aacg<----- ---------- ---------- ---------- ---------- --ugucuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUAU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aaa--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -ACCG(---- --cuuuc)CG GC-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUG -UAAA--GAU G-----UU-G U-CGA-GGAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aguguc-gga g-cacc-cuc acggag--g- cg-uc(uuug ---)gauu-a gcauc----- 1801 ---------- ------u-g- uggggg-uu- -------ucg cucuuu-a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- aca-cgg-gu cguggggggc 2161 (uucauu--- ---------- ---------- ---)gcuuuu ccac------ ---------- 2221 ---guu-cuc cccgugggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGGGUGU UC-AA-CG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA AGCC-G-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------GGA- AAC-CAAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUA-CU -AGAG(GU-G AAA---)UUC U-GAGA-C-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug acg-g-g-gg cu--(-cuag auaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----cgacu c-cg-uca-g ca-cccu--- ---------- ----uaGG(- 3661 GAAA-)CCa- -AAGUG-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(uuaaga g-a)------ acuuu----- cuu-gauu-u 4141 ucuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AC|- ---------- 4321 ------(--- --)[CCU-AC UAAAUagaug u--gcgcaug --------(c uug----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugugca---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guuau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACC-AUC-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uugu------ 5401 auguccu-gg auc(ggaa-) gaucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGUUCAU( UGCAAUUA)U UGAACUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-CGG (-UCAUCAC- )CCCGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-aucgga- uuau-ggcu- ccgg-uaaug gga------- ---------- 5701 -------(uu cu----)--- ---------- ---------- -------uuc caga-gca-- 5761 ggagcc-aug -aaaa-|ggu -cauuaaauc uu-acc-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.GL 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Great Lakes/GL). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Great Lakes/GL). ORGANISM Bangia sp. (Great Lakes/GL). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 4100 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacua-cuu ---------- uauac-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAC-cagu- uau-aguu-- ----ccuuug 241 aacg<----- ---------- ---------- ---------- ---------- --ugucuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUAU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aaa--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -ACCG(---- --cuuuc)CG GC-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUG -UAAA--GAU G-----UU-G U-CGA-GGAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aguguc-gga g-cacc-cuc acggag--g- cg-uc(uuug ---)gauu-a gcauc----- 1801 ---------- ------u-g- uggggg-uu- -------ucg cucuuu-a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- aca-cgg-gu cguggggggc 2161 (uucauu--- ---------- ---------- ---)gcuuuu ccac------ ---------- 2221 ---guu-cuc cccgugggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGGGUGU UC-AA-CG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA AGCC-G-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------GGA- AAC-CAAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUA-CU -AGAG(GU-G AAA---)UUC U-GAGA-C-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug acg-g-g-gg cu--(-cuag auaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----cgacu c-cg-uca-g ca-cccu--- ---------- ----uaGG(- 3661 GAAA-)CCa- -AAGUG-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(uuaaga g-a)------ acuuu----- cuu-gauu-u 4141 ucuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AC|- ---------- 4321 ------(--- --)[CCU-AC UAAAUagaug u--gcgcaug --------(c uug----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugugca---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guuau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACC-AUC-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uugu------ 5401 auguccu-gg auc(ggaa-) gaucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGUUCAU( UGCAAUUA)U UGAACUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-CGG (-UCAUCAC- )CCCGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-aucgga- uuau-ggcu- ccgg-uaaug gga------- ---------- 5701 -------(uu cu----)--- ---------- ---------- -------uuc caga-gca-- 5761 ggagcc-aug -aaaa-|ggu -cauuaaauc uu-acc-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.IRF 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Ireland freshwater/IRF). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Ireland freshwater/IRF). ORGANISM Bangia sp. (Ireland freshwater/IRF). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 4100 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacua-cuu ---------- uauac-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAC-cagu- uau-aguu-- ----ccuuug 241 aacg<----- ---------- ---------- ---------- ---------- --ugucuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUAU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aaa--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -ACCG(---- --cuuuc)CG GC-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUG -UAAA--GAU G-----UU-G U-CGA-GGAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aguguc-gga g-cacc-cuc acggag--g- cg-uc(uuug ---)gauu-a gcauc----- 1801 ---------- ------u-g- uggggg-uu- -------ucg cucuuu-a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- aca-cgg-gu cguggggggc 2161 (uucauu--- ---------- ---------- ---)gcuuuu ccac------ ---------- 2221 ---guu-cuc cccgugggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGGGUGU UC-AA-CG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA AGCC-G-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------GGA- AAC-CAAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUA-CU -AGAG(GU-G AAA---)UUC U-GAGA-C-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug acg-g-g-gg cu--(-cuag auaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----cgacu c-cg-uca-g ca-cccu--- ---------- ----uaGG(- 3661 GAAA-)CCa- -AAGUG-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(uuaaga g-a)------ acuuu----- cuu-gauu-u 4141 ucuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AC|- ---------- 4321 ------(--- --)[CCU-AC UAAAUagaug u--gcgcaug --------(c uug----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugugca---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guuau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACC-AUC-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uugu------ 5401 auguccu-gg auc(ggaa-) gaucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGUUCAU( UGCAAUUA)U UGAACUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-CGG (-UCAUCAC- )CCCGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-aucgga- uuau-ggcu- ccgg-uaaug gga------- ---------- 5701 -------(uu cu----)--- ---------- ---------- -------uuc caga-gca-- 5761 ggagcc-aug -aaaa-|ggu -cauuaaauc uu-acc-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.ITF 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Italy freshwater/ITF. ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Italy freshwater/ITF. ORGANISM Bangia sp. (Italy freshwater/ITF. REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 4100 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacua-cuu ---------- uauac-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAC-cagu- uau-aguu-- ----ccuuug 241 aacg<----- ---------- ---------- ---------- ---------- --ugucuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUAU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aaa--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -ACCG(---- --cuuuc)CG GC-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUG -UAAA--GAU G-----UU-G U-CGA-GGAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aguguc-gga g-cacc-cuc acggag--g- cg-uc(uuug ---)gauu-a gcauc----- 1801 ---------- ------u-g- uggggg-uu- -------ucg cucuuu-a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- aca-cgg-gu cguggggggc 2161 (uucauu--- ---------- ---------- ---)gcuuuu ccac------ ---------- 2221 ---guu-cuc cccgugggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGGGUGU UC-AA-CG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA AGCC-G-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------GGA- AAC-CAAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUA-CU -AGAG(GU-G AAA---)UUC U-GAGA-C-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug acg-g-g-gg cu--(-cuag auaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----cgacu c-cg-uca-g ca-cccu--- ---------- ----uaGG(- 3661 GAAA-)CCa- -AAGUG-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(uuaaga g-a)------ acuuu----- cuu-gauu-u 4141 ucuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AC|- ---------- 4321 ------(--- --)[CCU-AC UAAAUagaug u--gcgcaug --------(c uug----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugugca---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guuau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACC-AUC-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uugu------ 5401 auguccu-gg auc(ggaa-) gaucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGUUCAU( UGCAAUUA)U UGAACUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-CGG (-UCAUCAC- )CCCGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-aucgga- uuau-ggcu- ccgg-uaaug gga------- ---------- 5701 -------(uu cu----)--- ---------- ---------- -------uuc caga-gca-- 5761 ggagcc-aug -aaaa-|ggu -cauuaaauc uu-acc-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.SIM 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Lake Simcoe/SIM) subsp. Lake Simcoe, Ontario. ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Lake Simcoe/SIM) subsp. Lake Simcoe, Ontario. ORGANISM Bangia sp. (Lake Simcoe/SIM). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043365 LOCUS AF043365 1803 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043365 NID g3335123 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1803) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1803 /organism="Bangia sp." /db_xref="taxon:76713" /note="freshwater samples from Lake Ontario, Lake Erie, Lake Huron, Lake Michigan, Lake Simcoe, St. Lawrence River, Italy, Ireland and England (River Thames)" rRNA 1..>1803 /product="18S ribosomal RNA" BASE COUNT 473 a 377 c 479 g 474 t BASE COUNT 473 a 377 c 479 g 474 t 4100 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacua-cuu ---------- uauac-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAC-cagu- uau-aguu-- ----ccuuug 241 aacg<----- ---------- ---------- ---------- ---------- --ugucuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUAU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aaa--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -ACCG(---- --cuuuc)CG GC-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUG -UAAA--GAU G-----UU-G U-CGA-GGAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aguguc-gga g-cacc-cuc acggag--g- cg-uc(uuug ---)gauu-a gcauc----- 1801 ---------- ------u-g- uggggg-uu- -------ucg cucuuu-a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- aca-cgg-gu cguggggggc 2161 (uucauu--- ---------- ---------- ---)gcuuuu ccac------ ---------- 2221 ---guu-cuc cccgugggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGGGUGU UC-AA-CG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA AGCC-G-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------GGA- AAC-CAAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUA-CU -AGAG(GU-G AAA---)UUC U-GAGA-C-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug acg-g-g-gg cu--(-cuag auaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----cgacu c-cg-uca-g ca-cccu--- ---------- ----uaGG(- 3661 GAAA-)CCa- -AAGUG-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(uuaaga g-a)------ acuuu----- cuu-gauu-u 4141 ucuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AC|- ---------- 4321 ------(--- --)[CCU-AC UAAAUagaug u--gcgcaug --------(c uug----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugugca---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guuau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACC-AUC-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uugu------ 5401 auguccu-gg auc(ggaa-) gaucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGUUCAU( UGCAAUUA)U UGAACUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-CGG (-UCAUCAC- )CCCGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-aucgga- uuau-ggcu- ccgg-uaaug gga------- ---------- 5701 -------(uu cu----)--- ---------- ---------- -------uuc caga-gca-- 5761 ggagcc-aug -aaaa-|ggu -cauuaaauc uu-acc-g-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.BC1 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Northern British Columbia/BC1). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Northern British Columbia/BC1). ORGANISM Bangia sp. (Northern British Columbia/BC1). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043360 LOCUS AF043360 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043360 NID g3335118 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from northern British Columbia" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 460 a 375 c 481 g 488 t 3 others BASE COUNT 460 a 375 c 481 g 488 t 4099 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GGCU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACCUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUCGUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auc--)C 1321 GGGG-A-KGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGAG- -GCCU(---- ---uuua)CG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-gga g-cgcu-ccc acuggg--c- cg-gc(uucu ---)gccguu guucu----- 1801 ---------- ------g-g- uggggg-uu- -------cgu cuccu--a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcagcgg- uguugggguc 2161 (uucauu--- ---------- ---------- ---)gacucu ggca------ ---------- 2221 ---ccgauca acugcgggcc gguc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAGA--A 2461 AGGAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA CGCC-U-UGA AUUUGU-GAG CAUGGAA|UA -AUGGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------UGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-CAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AKG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gc uu--(-cuau uuaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 aaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUAGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACUUC-GU|- ---------- 4321 ------(--- --)[CCU-GA UAAAUagaug u--gcgcaug --------(c cas----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cguau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuua------ 5401 cagcccu-gg gcc(ggaa-) guccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------cug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUU-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-U -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ug-uccgga- ucgu-ggcu- agug-ugaug gaa------- ---------- 5701 -------(cu ug----)--- ---------- ---------- -------uuc caga-gua-- 5761 cgugcu-uug -agaa-|gug -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.BC2 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Victoria/BC2). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Victoria/BC2). ORGANISM Bangia sp. (Victoria/BC2). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043359 LOCUS AF043359 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043359 NID g3335117 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Victoria, British Columbia" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 459 a 375 c 484 g 489 t BASE COUNT 459 a 375 c 484 g 489 t 4096 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GGCU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 aacg<----- ---------- ---------- ---------- ---------- --ucuuuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUCGUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGAG- -GCCA(---- ---uuua)CG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AGAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-gga g-cgcu-ccu acugga--c- cg-gc(uucu ---)gccguu guucu----- 1801 ---------- ------g-g- uggggg-uu- -------cgc cuccu--a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcagcgg- uguuggggac 2161 (uuuacu--- ---------- ---------- ---)gucucu ggca------ ---------- 2221 ---ccgaccu acugcgggcc gguc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAGA--A 2461 AGGAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA CGCC-U-UGA AUUUGU-GAG CAUGGAA|UA -AUGGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------UGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gc ua--(-cuau uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 aaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagaug u--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cguau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuua------ 5401 cagcccu-gg ccc(ggaa-) ggucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUA-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-U -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ug-uccgga- ucgu-ggcu- agug-ugaug gaa------- ---------- 5701 -------(cu ug----)--- ---------- ---------- -------uuc caga-gca-- 5761 cgugcu-uug -aaaa-|gug -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.CA 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (California/CA). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (California/CA). ORGANISM Bangia sp. (California/CA). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043356 LOCUS AF043356 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043356 NID g3335114 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from California" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 459 a 372 c 485 g 490 t 1 others BASE COUNT 459 a 372 c 485 g 490 t 4097 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GGCU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 aacg<----- ---------- ---------- ---------- ---------- --ucuuuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUCGUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auc--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGAG- -GCCA(---- ---uuua)CG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AGAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-gga g-cgcu-ccu acugga--c- cg-gc(uucu ---)gccguu guucu----- 1801 ---------- ------g-g- uggggg-uu- -------cgc cuccu--a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcagcgg- uguuggggac 2161 (uuuacu--- ---------- ---------- ---)gucucu ggca------ ---------- 2221 ---ccgaccu acugcgggcc gguc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAGA--A 2461 AGGAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA CGCC-U-UGA AUUUGU-GAG CAUGGAA|UA -AUGGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------UGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gc ua--(-cuau uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 aaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUY-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagaug u--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cguau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuua------ 5401 cagcccu-gg gcc(ggaa-) ggucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUA-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-U -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ug-uccgga- ucgu-ggcu- agug-ugaug gaa------- ---------- 5701 -------(cu ug----)--- ---------- ---------- -------uuc caga-gca-- 5761 cgugcu-uug -aaaa-|gug -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.TX 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Texas/TX). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Texas/TX). ORGANISM Bangia sp. (Texas/TX). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043361 LOCUS AF043361 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043361 NID g3335119 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Texas" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 458 a 376 c 484 g 489 t BASE COUNT 458 a 376 c 484 g 489 t 4096 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GGCU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACCUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUCGUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auc--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGAG- -GCCU(---- ---uuua)CG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-gga g-cgcu-ccc acuggg--c- cg-gc(uucu ---)gccguu guucu----- 1801 ---------- ------g-g- uggggg-uu- -------cgu cuccu--a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcagcgg- uguugggguc 2161 (uucauu--- ---------- ---------- ---)gacucu ggca------ ---------- 2221 ---ccgauca acugcgggcc gguc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAGA--A 2461 AGGAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA CGCC-U-UGA AUUUGU-GAG CAUGGAA|UA -AUGGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------UGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gc uu--(-cuau uuaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 aaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagaug u--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cguau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuua------ 5401 cagcccu-gg gcc(ggaa-) guccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------cug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUU-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-U -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ug-uccgga- ucgu-ggcu- agug-ugaug gaa------- ---------- 5701 -------(cu ug----)--- ---------- ---------- -------uuc caga-gua-- 5761 cgugcu-uug -agaa-|gug -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NF 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Newfoundland/NF). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Newfoundland/NF). ORGANISM Bangia sp. (Newfoundland/NF). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043357 LOCUS AF043357 1807 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043357 NID g3335115 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1807) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1807 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Newfoundland" rRNA 1..>1807 /product="18S ribosomal RNA" BASE COUNT 459 a 378 c 482 g 481 t 7 others BASE COUNT 459 a 378 c 482 g 481 t 4103 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GGCU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACCUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUCGUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auc--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGAG- -GCCA(---- ---uuua)CG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA W-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUNG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-gga g-cgcu-ccc acuggg--c- cg-gc(uucu ---)gccguu guucu----- 1801 ---------- ------g-g- uggggg-uu- -------cgu cuccua---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcagcgg- ugwyrgggcc 2161 (uuaauu--- ---------- ---------- ---)gucucu ggca------ ---------- 2221 ---ccgauca wcugcgggcc gguc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAGA--A 2461 AGGAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA CGCC-U-UGA AUUUGU-GAG CAUGGAA|UA -AURGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------UGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gc ua--(-cuau uuaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 aaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagaug u--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcgua---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uguau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuua------ 5401 cagcccu-gg gcc(ggaa-) guccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------cug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-U -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ug-uccgga- ucgu-ggcu- agug-ugaug gaa------- ---------- 5701 -------(cu ug----)--- ---------- ---------- -------uuc caga-gca-- 5761 cgugcu-uug -agaa-|gug -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.OR 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Oregon/OR). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Oregon/OR). ORGANISM Bangia sp. (Oregon/OR). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043358 LOCUS AF043358 1806 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043358 NID g3335116 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1806) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1806) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1806 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Oregon" rRNA 1..>1806 /product="18S ribosomal RNA" BASE COUNT 461 a 376 c 482 g 487 t BASE COUNT 461 a 376 c 482 g 487 t 4097 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GGCU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACCUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUCGUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auc--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGAG- -GCCA(---- ---uuua)CG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----AAAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UCUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-gga g-cgcu-ccc acuggg--c- cg-gc(uucu ---)gccguu guucu----- 1801 ---------- ------g-g- uggggg-uu- -------cgu cuccua---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcagcgg- uguuggggcc 2161 (uuaauu--- ---------- ---------- ---)gucucu ggca------ ---------- 2221 ---ccgauca acugcgggcc gguc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAGA--A 2461 AGGAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA CGCC-U-UGA AUUUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------UGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-a-g-gc ua--(-cuau uuaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 aaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG AC-UC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagaug u--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cguau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuua------ 5401 cagcccu-gg gcc(ggaa-) guccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------cug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUU-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-U -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ug-uccgga- ucgu-ggcu- agug-ugaug gaa------- ---------- 5701 -------(cu ug----)--- ---------- ---------- -------uuc caga-gca-- 5761 cgugcu-uug -agaa-|gug -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.MA 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Massachusetts/MA). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Massachusetts/MA). ORGANISM Bangia sp. (Massachusetts/MA). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043362 LOCUS AF043362 1790 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043362 NID g3335120 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1790) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1790) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1790 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from Massachusetts" rRNA 1..>1790 /product="18S ribosomal RNA" BASE COUNT 457 a 372 c 477 g 483 t 1 others BASE COUNT 457 a 372 c 477 g 483 t 4114 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUGU-C AAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCU(---- ----uuc)AG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAACU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga g-cgcg-ucu acggaa--a- cg-gc(uuuu ---)gccugu uuu------- 1801 ---------- ------u-g- uggagg-uu- -------cug cuccuu-a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cgg--u gcgugggggc 2161 (uuaacu--- ---------- ---------- ---)guuucu gcgu------ ---------- 2221 ---ucc---- -cugcgggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AU UGCU-G-UGA AUACGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GNUGGU -UU-CC---- ------GGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGC ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gg uu--(-cuau uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc c-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAA ACCUU-AU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaggug u--gcgcaug --------(c uug----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ucc ugcgua---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUA-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uugu------ 5401 uaguccu-ug gcc(ggaa-) ggccc----g gguaau-cuu gugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-uccgga- ucgu-ggcu- agug-ugaug g--------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------c caga-gcg-- 5761 ccagcc-gug -aaaa-|guu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.NC 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (North Carolina/NC). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (North Carolina/NC). ORGANISM Bangia sp. (North Carolina/NC). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043363 LOCUS AF043363 1789 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043363 NID g3335121 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1789) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1789) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1789 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from North Carolina" rRNA 1..>1789 /product="18S ribosomal RNA" BASE COUNT 454 a 372 c 479 g 484 t BASE COUNT 454 a 372 c 479 g 484 t 4114 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacac-uuu ---------- uauac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUGU-C AAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCU(---- ----uuc)AG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAACU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga g-cgcg-ucu acggaa--a- cg-gc(uuuu ---)gccugu uuu------- 1801 ---------- ------u-g- uggagg-uu- -------cug cuccuu-a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cgg--u gcgugggggc 2161 (uuaacu--- ---------- ---------- ---)gucucu gcgu------ ---------- 2221 ---ucc---- --ugcgggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AU UGCU-G-UGA AUACGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GCUC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------GGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gg uu--(-cuau uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc c-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaggug u--gcgcaug --------(c uug----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ucc ugcgua---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUA-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uugu------ 5401 uaguccu-ug gcc(ggaa-) ggccc----g gguaau-cuu gugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ug-uccgga- ucgu-ggcu- agug-ugaug g--------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------c caga-gcg-- 5761 ccagcc-gug -aaaa-|guu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ban.sp.VI7 5903 bp RNA RNA 13-JAN-1999 DEFINITION Bangia sp. (Virgin Islands/VIS7). ACCESSION No information KEYWORDS No information. SOURCE Bangia sp. (Virgin Islands/VIS7). ORGANISM Bangia sp. (Virgin Islands/VIS7). REFERENCE 1 (bases 1 to 3004) AUTHORS Kirsten Muller JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF043364 LOCUS AF043364 1804 bp DNA PLN 23-JUL-1998 DEFINITION Bangia sp. 18S ribosomal RNA gene, partial sequence. ACCESSION AF043364 NID g3335122 KEYWORDS . SOURCE Bangia sp. ORGANISM Bangia sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 1 (bases 1 to 1804) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Biogeography and systematics of Bangia (Bangiales, Rhodophyta) based on the Rubisco spacer, rbcL gene and 18S rRNA gene sequences and morphometric analyses. I. North America JOURNAL Phycologia 37, 195-207 (1998) REFERENCE 2 (bases 1 to 1804) AUTHORS Muller,K.M., Sheath,R.G., Vis,M.L., Crease,T.J. and Cole,K.M. TITLE Direct Submission JOURNAL Submitted (16-JAN-1998) Botany, University of Guelph, Guelph, ON N1G 2W1, Canada FEATURES Location/Qualifiers source 1..1804 /organism="Bangia sp." /db_xref="taxon:76713" /note="isolated from the Virgin Islands" rRNA 1..>1804 /product="18S ribosomal RNA" BASE COUNT 457 a 371 c 496 g 480 t BASE COUNT 457 a 371 c 496 g 480 t 4099 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GAU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcga-cuu ---------- uauac-u-gu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --uaacuuuc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|guuucu gc|--CCU-A UCA--GCUGU C-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCGU-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)U 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uug)CG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----UGAUUC -CAAA--CCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-A(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|UUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuug-gga g-agcg-uuc acggga--c- cg-uc(uucc ---)gacggc gcc------- 1801 ---------- ------u-g- ugagcu-gc- -------ug- cuccua-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- acg-ugg--g ccguggggac 2161 (uucacu--- ---------- ---------- ---)gucucu gcgu------ ---------- 2221 -------cac cccgcgggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 --------AA UGCC-C-UGA AUACGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- UCCC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------AGU- GGC-UGAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UUGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACCAUGCC GAC|UG|--- 3421 --GGgau-ug aca-u-g-gg ca--(-caac uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc g-ug-uca-g ca-cccu--- ---------- ----ggGG(- 3661 GAAA-)CCa- -AAGUC-ucu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaggag u--gcgcaug --------(u guuucgg)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugugua---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gagac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac ucuu------ 5401 uaguccu-gg guc(ggaa-) gcccc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CUUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ug-ucugga- ucgu-ggcu- agug-ugacg ga-------- ---------- 5701 -------(uu cu----)--- ---------- ---------- --------uc cgga-gca-- 5761 ugggcc-gug -aaaa-|aga -uauuaaauc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS D.grisea 5903 bp RNA RNA 11-JAN-191 DEFINITION Dixonielloa grisea. ACCESSION No information KEYWORDS No information. SOURCE Dixonielloa grisea. ORGANISM Dixonielloa grisea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26187 DIXONIELLA GRISEA, red algae from M.Ragan LOCUS DIXFRA 1800 bp ds-DNA PLN 30-JUN-1994 DEFINITION Dixoniella grisea DNA fragment. ACCESSION L26187 KEYWORDS PCR amplified. SOURCE Dixonielloa grisea DNA. ORGANISM Dixonielloa grisea Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Porphyridiales; Porphyridiaceae. REFERENCE 1 (bases 1 to 1800) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507230 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1763..1800 /standard_name="PCR primer" /note="putative" source 1..1800 /organism="Dixonielloa grisea" /sequenced_mol="DNA" BASE COUNT 500 a 315 c 496 g 489 t BASE COUNT 499 a 311 c 493 g 486 t 4114 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAG --UCUUGUCU 61 CAAA|-GGUU AA-GCCAUGC A-AUUGA-AA GU|------- |-------(- ---)[----- 121 ---------- --------uu aaguga-uuu ---------- ucaac--uac gaa]------ 181 -----|---A CU|G-UGGA- CAGCU-CAUU AAAC-cagu- ugu-uauu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- ---uaaaagu 301 u>AAACGGAA UAUCCGCAG( -U-AAUU)CU GGGGU-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU G-GAUUGUA- 1141 GG(-GUAGUG G)CCU-ACAA U-|GGUGA-U UAC|GGGU-A --CGGA|GGA -U-(CAGG-) 1201 GUC-UGAUU- CCG|GAGAAG G-CGCC(U-U AAAAAC)GGC GGCU-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUAGUGU- -GCUC(---- ----uuu)GA GU-GU-ACUA A-UUGGAAU- 1501 ------GAGA ----GAAAUU -UAAA--UAU G-----UC-A A-CGA-UGAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagaug-gga c-uggu-uga aucuau--u- gu-gc(uaua u--)gugcga ugg------- 1801 ---------- ------a-c- uugaa----- --------cg gucuucc--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----uucuu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- gaa-guu--- uacauacucu 2161 (uuauug--- ---------- ---------- ---)agugug caag------ ---------- 2221 ---------- --uggaa-ga gaaa------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 -------AAU AGCU-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgc------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UCC|-UGUU 2821 -UU-GUUGGU -UU-AA---- ------GGU- GUC--GGGGA A--UGAUAAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCAGAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCUGG-AAG- A-CGAACU-G GUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UGCCCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGC- GCAAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAGAC)CG-U -UGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|CG|--- 3421 --GGGAU-ca ggu-u-u-aa a---(----c guuaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------gaug a-ac-uug-g ca-ccca--- ---------- ----agGA(- 3661 GAAA-)UCG- --AGUU-uuc gGGC|-U|C- UGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-AAACA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AUUUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GG-CU UUA|GUUGG- U|GGA(-AUA 4261 A-)UCUGUC- -UGC(UU-AA UU)GCGUUA- AC-GAACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CUU-GC UAACUAguca c--ggacauu --------(u uuau---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gau guaccgg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gugg- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUU-G -U-C(----- 5041 --GUUUA-)G ACGA-U-GGA AGUG-CGAGG CAAAGU--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CAG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-gCCGC A-CGCGUAAU ACACU--G-A UGCGG----- ---------- 5281 ---(------ ----)[ucaa cgaguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 augaccu-ug ucc(gaga-) ggaga----u ggaaau-cuu -ugaaa]--- ---------- 5461 -------acg cau-c-g--- UGCU-G-GGG AUCGACCAU( UGUAACU-)A UGGUCGUG-A 5521 ACGAGG-AAU G--CCUUGUA AG-CAU-GCU (-UCAACAA- )AGCGU-G-U -UGAAUAAG- 5581 U-CCCUGUUU UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GA---UG AA-UGUUGC- 5641 ggu-gaaa-- ugu-uugga- cgug-ggga- augu-uguug g--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ccaa-cag-- 5761 guuugc-ugu -gaaa-|auu -cguugaacc uu-agc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA----- -------~|| ||| // LOCUS E.carnea 5903 bp RNA RNA 11-JAN-191 DEFINITION Erythrotrichia carnea. ACCESSION No information KEYWORDS No information. SOURCE Erythrotrichia carnea. ORGANISM Erythrotrichia carnea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26189 ERYTHROTRICHIA CARNEA LOCUS EYTFRA 1795 bp ds-DNA PLN 30-JUN-1994 DEFINITION Erythrotrichia carnea DNA fragment. ACCESSION L26189 KEYWORDS PCR amplified. SOURCE Erythrotrichia carnea DNA. ORGANISM Erythrotrichia carnea Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Compsopogonales; Compsopogonaceae. REFERENCE 1 (bases 1 to 1795) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507242 FEATURES Location/Qualifiers primer_bind 1..21 /standard_name="PCR primer" /note="putative" primer_bind 1769..1795 /standard_name="PCR primer" /note="putative" source 1..1795 /organism="Erythrotrichia carnea" /sequenced_mol="DNA" BASE COUNT 465 a 367 c 472 g 491 t BASE COUNT 465 a 367 c 472 g 491 t 4108 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(-GA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgu-uuu ---------- -auac--cgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aauu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- -uuuaccauu 301 u>ACUUGGAA UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -agaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA U-|GGUGU-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGGAAG- -GCCU(---- ---uuua)AG GU-UU-UCCA C-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-ggg c-gugc-cgc acgacu--c- gg-cc(acu- ---)ggucgu gcuug----- 1801 ---------- ------u-g- uggu------ --------gc gccuucc--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----uucca 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- -cg-agu--- gugugggcuc 2161 (uucacu--- ---------- ---------- ---)gagucu gcgc------ ---------- 2221 ----aua-ag -------uug ggau------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AACA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCU-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uuug------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gUUU|-UAUU 2821 -UU-GUUGGU -UU-CU---- ------GAG- ACC-GAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA CU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAC -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --GGGAU-ua gca-g-a-ug uca-(----- -acu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uua-g ca-cccu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucucu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUagcua c--acgaau- --------(c uugu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------au uggugg---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----ccag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUC-C -G-U(----- 5041 --GACUA-)A CGGA-U-GGA GGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucag cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ug gcc(ggaa-) ggucu----g gguaau-cuc -uuaaa]--- ---------- 5461 -------cug cau-c-g--- UGCU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 ggu-gaaa-- ugu-ccgga- cugc-ggcg- aucg-cuucg g--------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- ccgu-cgc-- 5761 gucgcu-gcg -gaaa-|gcu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Erythro.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Erythrocladia sp.. ACCESSION No information KEYWORDS No information. SOURCE Erythrocladia sp. ORGANISM Erythrocladia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26188 Erythrocladia _______ (Carolyn has the species name, but she's at lunch now) Mark Ragan LOCUS EYAFRA 1793 bp ds-DNA PLN 30-JUN-1994 DEFINITION Erythrocladia sp. DNA fragment. ACCESSION L26188 KEYWORDS PCR amplified. SOURCE Erythrocladia sp. DNA. ORGANISM Erythrocladia sp. Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Compsopogonales; Compsopogonaceae. REFERENCE 1 (bases 1 to 1793) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507241 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1767..1793 /standard_name="PCR primer" /note="putative" source 1..1793 /organism="Erythrocladia sp." /sequenced_mol="DNA" BASE COUNT 460 a 368 c 477 g 488 t BASE COUNT 460 a 368 c 477 g 488 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgu-uuu ---------- -auac--cgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aauu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaccucu 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -agaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA U-|GGUGU-U AAC|GGGC-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AACC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGGAAG- -GCCU(---- ---uuua)AG GU-UU-UCCA C-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC C-----UU-A A-CGG-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-ggg c-gcgu-cgc acgacu--c- gg-cc(acu- ---)ggucgu gcuu------ 1801 ---------- ------g-u- gcgga----- --------gc gccuucc--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----uucca 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- -cg-agu--- gcgugggcuc 2161 (uuuacu--- ---------- ---------- ---)ggguuu gcgc------ ---------- 2221 ---------- --aggaguug ggau------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AACA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCU-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uuug------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gUUU|-UAUU 2821 -UU-GUUGGU -UU-CU---- ------GAG- ACC-GAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA CU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --GGGAU-ua gca-g-a-ug uua-(----- -uuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uua-g ca-cccu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAgcua c--acgaau- --------(c cugu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------a- uugguggcc- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------ag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUC-C -G-U(----- 5041 --GACUA-)A CGGA-U-GGA GGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ug gcc(ggaa-) ggucu----g gguaau-cuc ucaaa-]--- ---------- 5461 -------cug cau-c-g--- UGCU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 ggu-gaaa-- ugu-ccgga- cugc-ggcg- auug-cuucg g--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ccgu-cgc-- 5761 gucgcu-gcg -gaaa-|gcu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGU~~~~~ ~~~~~~~~|| ||| // LOCUS B.erythros 5903 bp RNA RNA 05-APR-1998 DEFINITION Boldia erythrosiphon.. ACCESSION No information KEYWORDS No information. SOURCE Boldia erythrosiphon. ORGANISM Boldia erythrosiphon. REFERENCE 1 (bases 1 to 3004) AUTHORS Holton,R.W., Boele-Bos,S.A. and Stam,W.T. TITLE Phylogenetic relationships of the freshwater alga Boldia erythrosiphon (Compsopogonales, Rhodophyta) based on 18S rRNA gene sequences JOURNAL J. Phycol. 34 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF055299 LOCUS AF055299 1786 bp DNA PLN 05-APR-1998 DEFINITION Boldia erythrosiphon 18S ribosomal RNA gene, partial sequence. ACCESSION AF055299 NID g3023153 KEYWORDS . SOURCE Boldia erythrosiphon. ORGANISM Boldia erythrosiphon Eukaryota; Rhodophyta; Bangiophyceae; Compsopogonales; Boldia. REFERENCE 1 (bases 1 to 1786) AUTHORS Holton,R.W., Boele-Bos,S.A. and Stam,W.T. TITLE Phylogenetic relationships of the freshwater alga Boldia erythrosiphon (Compsopogonales, Rhodophyta) based on 18S rRNA gene sequences JOURNAL J. Phycol. 34 (1998) In press REFERENCE 2 (bases 1 to 1786) AUTHORS Holton,R.W., Boele-Bos,S.A. and Stam,W.T. TITLE Direct Submission JOURNAL Submitted (23-MAR-1998) Marine Biology, Biological Centre, P.O. Box 14, Haren 9750 AA, The Netherlands FEATURES Location/Qualifiers source 1..1786 /organism="Boldia erythrosiphon" /db_xref="taxon:74908" rRNA <1..>1786 /product="18S ribosomal RNA" BASE COUNT 434 a 331 c 496 g 466 t 59 others BASE COUNT 434 a 331 c 496 g 466 t 4176 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacau-cuu ---------- uguac--ugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- aau-aauu-- ----uaunug 241 augg<----- ---------- ---------- ---------- ---------- --uaccucgu 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA U-|GGUGU-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGAAG- -GCUC(---- ---uuuu)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UGAN--UCU C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-NGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaaguu-ggg c-gggc-ggc acgacu--c- gn-nn-nnnn ----nnnnnn nnnnnnnnnn 1801 n--------- --------g- uggc------ -----sggcc gccgugu--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----ugcug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- -cg-aga--- ggaggugcuc 2161 (uugguu--- ---------- ---------- ---)gagugu cugc------ ---------- 2221 ---------- --uggagccg gcgu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AACA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------GA UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uuug------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- guuU|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------UGG- GCC-GAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUCGA-AAG- A-CGAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --GGGAU-ug gug-g-g-ga uc--(----- gaag-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---aaugagc c-ca-cca-g ca-cccu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUG-uuu gGGU|-U|C- UGGGGNNAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AUUGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAgcug c--gggaauu --------(g cuga---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ga- ugccg-g--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------ag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- c-UAGAGG]- --|------- ---------- GACU-AUC-C -G-U(----g 5041 annnnnn-)n nnnn-N-NNN NNNU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[gcag cgagu-u--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -ggaccu-uu gcc(ggaa-) ggcgc----g gguaau-cuc -ugaac]--- ---------- 5461 -------cug cau-c-g--- UGCU-G-GGG CUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA AS-----gag --ucau---- -mkcgC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CAGCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUCU- 5641 cga-gugu-a ca-ucuguu- cgga-cugcg gcuggcuggc ggg------- ---------- 5701 -------(uu u-----)--- ---------- ---------- --------cc gkgg-c---- 5761 c-gguc-ugc -ggaa-|agu -cauugaacy uu-aum-a-u uuag-AGGAA GG-AGAA-G- 5821 USGUAACAAG GU-------- -----U-U-C CGUAG-(UGA A)CCUGC~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.acanth 5903 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra acanthophora var. acanthophora. ACCESSION No information KEYWORDS No information. SOURCE Porphyra acanthophora var. acanthophora. ORGANISM Porphyra acanthophora var. acanthophora. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26197 LOCUS PTEFRA 1845 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra acanthophora DNA fragment. ACCESSION L26197 NID g507792 KEYWORDS PCR amplified. SOURCE Porphyra acanthophora (strain acanthophora) DNA. ORGANISM Porphyra acanthophora Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1845) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1845 /organism="Porphyra acanthophora" /strain="acanthophora" /db_xref="taxon:35145" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1819..1845 /standard_name="PCR primer" /note="putative" BASE COUNT 469 a 400 c 493 g 483 t BASE COUNT 469 a 400 c 493 g 483 t 4058 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgccuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----ccccac 301 u>ACUUGG-A UAGCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)CCU-ACCA U-|GGUGU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ---uuua)CG GU-CC-UCUA A-UUGGAGU- 1501 ------GAGA ----ACAAUU -UAAA--UUC C-----UU-A U-CAA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuc-gga g-cacc-ucc acgggc--c- gg-gc(uucu ---)gcuuug uuug------ 1801 ---------- ------c-c- aguugg-g-- -gguu--ugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- acg-ugg-a- guguggaggc 2161 (uugaau--- ---------- ---------- ---)gcccuc gaca------ ---------- 2221 ---caacuca ucugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAGGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUCGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ucuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------UGG- GAU-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGCACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGGAU-ug gcg-g-g-gg aaa-(----- cacuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -uuau-gacu c-cg-uca-g ca-cccu--- ---------- ----auGG(- 3661 GAAA-)CCA- -AAGUU-cuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-gauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAggug c--gcguaug --------(c ccg----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUC-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--UA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa caagucg--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 caguccu-gg acc(ggaa-) ggcuc----g gguaac-cuu uugaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGU-AGG (-UCACUAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ugu-ucgga- uugc-ggcu- cggg-uguga uggac----- ---------- 5701 -------(uu a-----)--- ---------- ---------- -------guc caga-gca-- 5761 cuagcc-guu -agaa-|guu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGG CACUGGC--- 5881 --CGU~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ampl.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Porphyra amplissima. ACCESSION No information KEYWORDS No information. SOURCE Porphyra amplissima. ORGANISM Porphyra amplissima. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L36048 LOCUS PTERRNA 1833 bp DNA PLN 31-AUG-1994 DEFINITION Porphyra amplissima small subunit ribosomal RNA (rDNA) gene. ACCESSION L36048 NID g533257 KEYWORDS PCR identification; ribosomal RNA; ribosomal RNA small subunit. SOURCE Porphyra amplissima (individual_isolate Sandy Cove, Halifax County, Nova Scotia) DNA. ORGANISM Porphyra amplissima Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 1833) AUTHORS Oliveira,M.C., Kurniawan,J., Bird,C.J., Rice,E.L., Murphy,C.A., Singh,R.K., Gutell,R.R. and Ragan,M.A. TITLE An investigation of order Bangiales (Bangiophycidae, Rhodophyta) based on nuclear small-subunit ribosomal RNA gene sequences JOURNAL Unpublished (1994) COMMENT NCBI gi: 533257 FEATURES Location/Qualifiers source 1..1833 /organism="Porphyra amplissima" /isolate="Sandy Cove, Halifax County, Nova Scotia" /sequenced_mol="DNA" primer_bind complement(1..22) /note="putative" primer_bind 1810..1833 /note="putative" BASE COUNT 464 a 386 c 493 g 490 t ORIGIN BASE COUNT 464 a 386 c 493 g 490 t 4070 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- uauac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----cacuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GCCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug u-gc------ 1801 ---------- ------c-u- gugggagu-- ------uugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cg--gu guguggggac 2161 (uugauu--- ---------- ---------- ---)guuucu gcgc------ ---------- 2221 ---guuaa-a ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------GGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGGAU-ug gcg-g-g-gg ca--(-cuau uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg gcc(ggaa-) ggcuu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ucgga- uugc-ggcu- uuug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcc-- 5761 guagcc-gug -agaa-|guu -cauuaaauc uu-auc-a-u uuag-AGGAA GA-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ampl.2 5903 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra amplissima.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra amplissima. ORGANISM Porphyra amplissima. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB015791 LOCUS AB015791 1785 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra amplissima gene for small subunit rRNA, partial sequence. ACCESSION AB015791 NID g3986213 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra amplissima DNA. ORGANISM Porphyra amplissima Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1785) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..1785 /organism="Porphyra amplissima" /db_xref="taxon:36332" primer_bind 1..22 rRNA <1..>1785 /product="small subunit rRNA" primer_bind 1766..1785 BASE COUNT 449 a 378 c 488 g 470 t BASE COUNT 449 a 378 c 488 g 470 t 4118 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA---- ---------- 61 --AA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaccuuu ---------- -auac-ucgu aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-cguu-- ----ccuuug 241 ggga<----- ---------- ---------- ---------- ---------- ---cuuuugc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cgcucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-C---|--- -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CC-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(gauu ---)gccuuu g--------- 1801 ---------- -----ugccu ggggagguu- -------ugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cg--gu guguggggac 2161 (uuuauu--- ---------- ---------- ---)guuucu gcgcgu---- ---------- 2221 -----ga--a ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ucuc|-uAUU 2821 -UU-GUUGGU -UU-CC---- ------GGU- GAC-UGAGGA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CAC A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGGAU-ug gcg-g-g-gg ca--(-cuau uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc a-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-gauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUG-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg acc(ggaa-) gguacu---g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-aaaa-- ugu-ccgga- uugu-ggcg- ccug-ugaug ga-------- ---------- 5701 -------(cu ug----)--- ---------- ---------- --------uc caga-gcg-- 5761 gaugcc-gcg -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.den.KF 5903 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra dentata. subsp. Porphyra dentata isolate Koga Fukuoka. ORGANISM Porphyra dentata. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013183 LOCUS AB013183 3037 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra dentata gene for small subunit rRNA, isolate Koga Fukuoka. ACCESSION AB013183 NID g3298494 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra dentata gametophyte thallus DNA. ORGANISM Porphyra dentata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3037) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3037 /organism="Porphyra dentata" /note="collection_site: Koga Fukuoka" /db_xref="taxon:76160" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3037 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1198 /note="putative" exon 1199..2435 /note="putative" /product="SSU rRNA" intron 2436..3007 /note="group I intron; putative" exon 3008..3037 /note="putative" /product="SSU rRNA" BASE COUNT 772 a 674 c 851 g 740 t BASE COUNT 462 a 390 c 494 g 489 t 4068 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 agaa<----- ---------- ---------- ---------- ---------- ----ccauac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uucu ---)gcccuu gugc------ 1801 ---------- --------c- agugggagu- ----u--ugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acg-cgg--u guguggggac 2161 (uugauu--- ---------- ---------- ---)gucucu gcgcguu--- ---------- 2221 --------ua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------AGU- GAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGGAU-ug gcg-g-g-gc uu--(-cuaa uuua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugucc a-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-uauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 ucguccu-ga guc(ggaa-) ggccc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUA-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgu-ggcu- gcug-ugaug gac------- ---------- 5701 -------(cc a-----)--- ---------- ---------- -------guc caga-gug-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.hait.1 5903 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra haitanensis. subsp. Porphyra haitanensis isolate Yuge Ehime.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra haitanensis. subsp. Porphyra haitanensis isolate Yuge Ehime. ORGANISM Porphyra haitanensis. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013181 LOCUS AB013181 2391 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra haitanensis gene for small subunit rRNA, isolate Yuge Ehime. ACCESSION AB013181 NID g3298492 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra haitanensis gametophyte thallus DNA. ORGANISM Porphyra haitanensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2391) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2391) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2391 /organism="Porphyra haitanensis" /note="collection_site: Yuge Ehime" /db_xref="taxon:76159" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2391 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..1807 /note="putative" /product="SSU rRNA" intron 1808..2361 /note="group I intron; putative" exon 2362..2391 /note="putative" /product="SSU rRNA" BASE COUNT 600 a 526 c 681 g 584 t BASE COUNT 462 a 393 c 497 g 485 t 4066 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 agaa<----- ---------- ---------- ---------- ---------- ----ccacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ugcucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GC-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-cuc acgggc--c- gg-gc(uucu ---)gcccuu gugc------ 1801 ---------- --------c- aguggg-a-- --guu--ugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcggu--g ug-uggggcc 2161 (uugacu--- ---------- ---------- ---)gguucc gcgc------ ---------- 2221 ---guuuaua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGGAU-ug gcg-g-g-gc uu--(-cuaa uuca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugucc a-cg-uca-g ca-cccu--- ---------- ----aaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-uauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUA-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgu-ggcu- acug-ugaug ga-------- ---------- 5701 -------(cu cug---)--- ---------- ---------- --------uc caga-gcg-- 5761 gcagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.hait.2 5903 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra haitanensis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra haitanensis. ORGANISM Porphyra haitanensis. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB015795 LOCUS AB015795 2354 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra haitanensis gene for small subunit rRNA, partial sequence. ACCESSION AB015795 NID g3986217 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra haitanensis DNA. ORGANISM Porphyra haitanensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2354) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2354 /organism="Porphyra haitanensis" /db_xref="taxon:76159" rRNA join(<1..557,1120..>2354) /product="small subunit rRNA" primer_bind 1..22 intron 558..1119 /note="intron-like structure" primer_bind 2335..2354 BASE COUNT 591 a 518 c 659 g 586 t BASE COUNT 453 a 384 c 483 g 470 t 4113 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-G------- ---------U 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 agaa<----- ---------- ---------- ---------- ---------- ----ccacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ugcucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GC-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-cuc acgggc--c- gg-gc(uucu ---)gcccuu gugc------ 1801 ---------- --------c- aguggg-a-- --guu--ugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcggu--g ug-uggggcc 2161 (uugacu--- ---------- ---------- ---)gguucc gcgc------ ---------- 2221 ---guuuaua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUA-|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGGAU-ug gcg-g-g-gc uu--(-cuaa uuca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugucc a-cg-uca-g ca-cccu--- ---------- ----aaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-uauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUA-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgu-ggcu- acug-ugaug ga-------- ---------- 5701 -------(cu cug---)--- ---------- ---------- --------uc caga-gcg-- 5761 gcagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.katada 5903 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ACCESSION No information KEYWORDS No information. SOURCE Porphyra katadae. subsp. Porphyra katadae isolate Kawatana Yamaguchi. ORGANISM Porphyra katadae. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013184 LOCUS AB013184 3024 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra katadae gene for small subunit rRNA, isolate Kawatana Yamaguchi. ACCESSION AB013184 NID g3298495 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra katadae gametophyte thallus DNA. ORGANISM Porphyra katadae Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3024) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3024 /organism="Porphyra katadae" /note="collection_site: Kawatana Yamaguchi" /db_xref="taxon:76161" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3024 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1169 /note="putative" exon 1170..2406 /note="putative" /product="SSU rRNA" intron 2407..2994 /note="group I intron; putative" exon 2995..3024 /note="putative" /product="SSU rRNA" BASE COUNT 758 a 677 c 856 g 733 t BASE COUNT 459 a 389 c 498 g 489 t 4068 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 agaa<----- ---------- ---------- ---------- ---------- ----ccacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug uuugc----- 1801 ---------- --------c- aguggg-a-- --guuu--gu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcggu--- guguggggac 2161 (uuuacu--- ---------- ---------- ---)gucucu gcgc------ ---------- 2221 ----guu-ua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGGAU-ug gcg-g-g-ga ca--(-cuau uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgu-ggcu- gcug-ugaug ga-------- ---------- 5701 -------(cu ug----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.leucos 5903 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra leucosticta clone 9. ACCESSION No information KEYWORDS No information. SOURCE Porphyra leucosticta clone 9. ORGANISM Porphyra leucosticta clone 9. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26199 LOCUS PTEFRB 1835 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra leucosticta DNA fragment. ACCESSION L26199 NID g507793 KEYWORDS PCR amplified. SOURCE Porphyra leucosticta DNA. ORGANISM Porphyra leucosticta Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1835) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1835 /organism="Porphyra leucosticta" /db_xref="taxon:35146" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1809..1835 /standard_name="PCR primer" /note="putative" BASE COUNT 462 a 395 c 498 g 480 t BASE COUNT 462 a 395 c 498 g 480 t 4068 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----ucu)GG GU-CC-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug uugc------ 1801 ---------- --------c- aguggg---- -aguu--ugu cuccucu--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcggu--- guguggggac 2161 (uuuacu--- ---------- ---------- ---)gucucu gcgc------ ---------- 2221 ----guu-ua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AU UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGGAU-ug gcg-g-g-gg ca--(-cuau uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggccc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGU-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgu-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Por.miniat 5903 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra miniata. ACCESSION No information KEYWORDS No information. SOURCE Porphyra miniata. ORGANISM Porphyra miniata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26200 LOCUS PTEFRC 1836 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra miniata DNA fragment. ACCESSION L26200 NID g507794 KEYWORDS PCR amplified. SOURCE Porphyra miniata DNA. ORGANISM Porphyra miniata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1836) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1836 /organism="Porphyra miniata" /db_xref="taxon:35147" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1810..1836 /standard_name="PCR primer" /note="putative" BASE COUNT 457 a 381 c 506 g 492 t BASE COUNT 457 a 381 c 506 g 492 t 4067 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-cguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ---cuuuugc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cgcucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(gguu ---)gccuuu gugc------ 1801 ---------- --------c- cgugga---- -gguuu--gu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgug--gug ugu-ggggac 2161 (uuuauu--- ---------- ---------- ---)guuucu gcuc------ ---------- 2221 ----aug-aa gcuacgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- UcuC|-UAUU 2821 -UU-GUUGGU -UU-CU---- ------ggu- gAC-UGAGGA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGG-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-GU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gg ca--(-cuaa uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc a-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac agg(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAggug c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUG-U-GGA GGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg acc(ggaa-) ggcuu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGU-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgu-ggcg- ucug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guugcc-aug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Por.onoi 5903 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra onoi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra onoi. ORGANISM Porphyra onoi. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB015794 LOCUS AB015794 2331 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra onoi gene for small subunit rRNA, partial sequence. ACCESSION AB015794 NID g3986216 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra onoi DNA. ORGANISM Porphyra onoi Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2331) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2331 /organism="Porphyra onoi" /db_xref="taxon:78445" rRNA join(<1..554,1112..>2331) /product="small subunit rRNA" primer_bind 1..22 intron 555..1111 /note="intron-like structure" primer_bind 2312..2331 BASE COUNT 598 a 519 c 642 g 572 t BASE COUNT 453 a 386 c 476 g 469 t 4119 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA---- ---------- 61 --AA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCUAACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug uugc------ 1801 ---------- --------c- agugggaguu -------ugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg--gug ugc--aggcc 2161 (uuuacu--- ---------- ---------- ---)ucucug cg-------- ---------- 2221 ---cguu-ua c-ugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- Gcuc|-uAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuau uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|CUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-CAACGAC ACCUC-CU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAcgug c--gcgcaug --------(c cau----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUA-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 UCCCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauu-aauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.pseu.1 5903 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra pseudolinearis. subsp. misspelled pseudolinealis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. subsp. misspelled pseudolinealis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB015793 LOCUS AB015793 1788 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra pseudolinealis gene for small subunit rRNA, partial sequence. ACCESSION AB015793 NID g3986215 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra pseudolinealis DNA. ORGANISM Porphyra pseudolinearis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1788) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..1788 /organism="Porphyra pseudolinearis" /db_xref="taxon:81939" primer_bind 1..22 rRNA <1..>1788 /product="small subunit rRNA" primer_bind 1769..1788 BASE COUNT 447 a 381 c 490 g 470 t BASE COUNT 447 a 381 c 490 g 470 t 4115 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-G------- ---------U 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacucuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 agaa<----- ---------- ---------- ---------- ---------- ----cguuac 301 u>ACUUGG-A UAUCCGUAG( -U-AAUC)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gucucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-AUA-UG G)UCU-ACCA U-|GGUAU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GUA 1261 AGGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GGGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc augggc--c- gg-gc(ucu- ---)gcccuu gugc------ 1801 ---------- --------u- agugggaguu -------ugu cucuuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg--gug ugu-ggggcc 2161 (uuuacu--- ---------- ---------- ---)gguucc gcgc------ ---------- 2221 ---guuu-ua ccugcgggcc ggcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGUA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA CGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- Gcuc|-uAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuau uaca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc a-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaau-gauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAggug c--gcgcaug c-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gcac uguguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-GUG-C -G-C(----- 5041 --GUCUA-)G CGUA-C-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCUC----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac cuga------ 5401 ucguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------ggg cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AG- (-UCAUCAC- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- uugc-gggu- gaag-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-acg-- 5761 ggaacc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.pseu.2 5903 bp RNA RNA 10-JUL-1998 DEFINITION Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra pseudolinearis. subsp. Porphyra pseudolinearis isolate Tohaku Tottori. str. misspelled pseudolinealis. ORGANISM Porphyra pseudolinearis. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013185 LOCUS AB013185 2983 bp DNA PLN 10-JUL-1998 DEFINITION Porphyra pseudolinealis gene for small subunit rRNA, isolate Tohaku Tottori. ACCESSION AB013185 NID g3298496 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra pseudolinealis gametophyte thallus DNA. ORGANISM Porphyra pseudolinealis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2983) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2983 /organism="Porphyra pseudolinealis" /note="collection_site: Tohaku Tottori" /db_xref="taxon:76162" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2983 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1135 /note="putative" exon 1136..2372 /note="putative" /product="SSU rRNA" intron 2373..2953 /note="group I intron; putative" exon 2954..2983 /note="putative" /product="SSU rRNA" BASE COUNT 754 a 658 c 835 g 736 t BASE COUNT 457 a 389 c 503 g 486 t 4068 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacucuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 agaa<----- ---------- ---------- ---------- ---------- ----cguuac 301 u>ACUUGG-A UAUCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gucucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-AUAUGG G)UCU-ACCA U-|GGUAU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GUGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuc-gga g-cgcc-ccc augggc--c- gg-gc(ucu- ---)gcccuu gugc------ 1801 ---------- --------u- agugggaguu -------ugu cucuuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg--gug ugu-ggggcc 2161 (uuuacu--- ---------- ---------- ---)gguucc gcgc------ ---------- 2221 ---guuu-ua ccugcgggcc ggcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGUA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA CGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- Gcuc|-uAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UG--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuau uaca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc a-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaau-gauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAggug c--gcgcaug c-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gcac uguguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-GUG-C -G-C(----- 5041 --GUCUA-)G CGUA-C-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCUC----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac cuga------ 5401 ucguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------ggg cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAC- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- uugc-gggu- gaag-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-acg-- 5761 ggaacc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.purpur 5903 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra purpurea (Avonport, NS). ACCESSION No information KEYWORDS No information. SOURCE Porphyra purpurea (Avonport, NS). ORGANISM Porphyra purpurea (Avonport, NS). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26201 LOCUS PTEFRF 1839 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra purpurea DNA fragment. ACCESSION L26201 NID g507796 KEYWORDS PCR amplified. SOURCE Porphyra purpurea (strain Avonport) DNA. ORGANISM Porphyra purpurea Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1839) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1839 /organism="Porphyra purpurea" /strain="Avonport" /db_xref="taxon:2787" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1813..1839 /standard_name="PCR primer" /note="putative" BASE COUNT 465 a 384 c 498 g 492 t BASE COUNT 465 a 384 c 498 g 492 t 4064 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaccucg uuuucuuuuu uguac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAC-cagu- uau-aguu-- ----ucuuug 241 aacg<----- ---------- ---------- ---------- ---------- --ugccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUGU-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUAGGGG- -GCCU(---- ----uuu)AG GU-UU-UCUA A-UCGGAAU- 1501 ------GAGA ----AGAAUU -UAAA--CCU C-----UC-A C-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauauc-ggg g-cgcg-gac acagaa--g- cg-gc(uccg ---)guugca gcugu----- 1801 ---------- ------g-a- acgg-u---- -------cug ccccua-a-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uucugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg--gug ugc--gggac 2161 (uuuacu--- ---------- ---------- ---)gucucu gcgc------ ---------- 2221 ---------a ccugcgggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGGGUGU UC-AA-AG-C AUGCG----- ---------- ---------- ---------- 2521 --------UU CGCU-A-UGG AUACGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------ggg- gaC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CGCAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCUU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --gagau-ug gcg-g-g-ga uu--(--ugu ugua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugauc c-cg-uca-g ca-uccu--- ---------- ----gcGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUUACCAGG UC[cgg-aca 4081 ggag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AC|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGug c--gcguaug --------(c ucg----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gcaCU CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUA-U -G-C(----- 5041 --GUCUA-)G UAUA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuuu------ 5401 acguccu-ug guu(uuau-) gaccu----g gguaau-cuu gggaac]--- ---------- 5461 -------gug cau-c-g--- uGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ugc-uuaga- ucuu-gggg- agcg-gccug ga-------- ---------- 5701 -------(gg ucaaag)--- ---------- ---------- --------uc cagu-acg-- 5761 ugaacc-uug -aaaa-|gau -cauugaauc uu-acc-c-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Por.sp.SH 5903 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra sp. subsp. Porphyra sp. Shinori Hakodate Hokkaido. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. subsp. Porphyra sp. Shinori Hakodate Hokkaido. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB017077 LOCUS AB017077 1631 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra sp. DNA, internal transcribed spacer 1 (ITS1). ACCESSION AB017077 NID g3510353 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra sp. gametophyte individual thallus DNA. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1631) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1631 /organism="Porphyra sp." /note="collection_site: Shinori Hakodate Hokkaido" /db_xref="taxon:2790" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,1186..1215) /note="putative" /product="small subunit ribosomal RNA" intron 219..1185 /note="group I intron; putative" misc_feature 1216..1575 /note="ITS1; putative" rRNA 1576..>1631 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 400 a 404 c 440 g 387 t BASE COUNT 61 a 59 c 64 g 64 t 5655 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~|~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(~~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~AUUA)U UGAUCUUA-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ugcu- auug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.sp.SY 5903 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra sp. subsp. Porphyra sp. isolate Shimonoseki Yamaguchi. ORGANISM Porphyra sp. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013182 LOCUS AB013182 3048 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra sp. gene for small subunit rRNA, isolate Shimonoseki Yamaguchi. ACCESSION AB013182 NID g3298493 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra sp. gametophyte thallus DNA. ORGANISM Porphyra sp. Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3048) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3048 /organism="Porphyra sp." /note="collection_site: Shimonoseki Yamaguchi" /db_xref="taxon:2790" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3048 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..569 /note="putative" /product="SSU rRNA" intron 570..1128 /note="putative" exon 1129..2364 /note="putative" /product="SSU rRNA" intron 2365..3018 /note="group I intron; putative" exon 3019..3048 /note="putative" /product="SSU rRNA" BASE COUNT 780 a 678 c 859 g 731 t BASE COUNT 467 a 391 c 497 g 480 t 4068 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 agaa<----- ---------- ---------- ---------- ---------- ----cacuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CC-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuc-gga g-cacu-cgc acgggc--c- gg-gc(uucc a--)gucuau gugc------ 1801 ---------- --------c- aguggg-g-- ----guuugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcggu-g- ugug-ggaac 2161 (uucacu--- ---------- ---------- ---)guuucc gcgc------ ---------- 2221 ----guu-ua ccugcgggcc ggcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gg ca--(-cuag uaaa-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc a-cg-uca-g ca-cccu--- ---------- ----guGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-uauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGAUg c--gcgcaug --------(c uag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugugc----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ucgau- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-GUG-C -G-C(----- 5041 --GUCUA-)G CGUA-C-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 ucguccu-gg auc(ggaa-) gcccc----g gguaau-cuu uugaaa]--- ---------- 5461 -------uag cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAC- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- uugc-ggcu- gcug-ugaug ga-------- ---------- 5701 -------(cu ug----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-aug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.spir.B 5903 bp RNA RNA 16-JUL-1994 DEFINITION Porphyra spiralis B. str. PSA-B/Ubatuba, variety amplifolia. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis B. str. PSA-B/Ubatuba, variety amplifolia. ORGANISM Porphyra spiralis B. REFERENCE 1 (bases 1 to 3004) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26175 LOCUS PTEPSAB 821 bp DNA PLN 16-JUL-1994 DEFINITION Porphyra spiralis var. amplifolia DNA sequence with partial cds. ACCESSION L26175 NID g438855 KEYWORDS . SOURCE Porphyra spiralis (strain PSA-B/Ubatuba, variety amplifolia) DNA. ORGANISM Porphyra spiralis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 821) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) MEDLINE 94224117 FEATURES Location/Qualifiers source 1..821 /organism="Porphyra spiralis" /strain="PSA-B/Ubatuba" /variety="amplifolia" /db_xref="taxon:31350" CDS join(1..47,791..821) /partial /codon_start=1 /label=ORF /db_xref="PID:g438856" /translation="IIKSYHLEEGEVVTRFSVGEPAEGSS" exon 1..47 intron 48..790 /evidence=experimental /label=Group_I_intron exon 791..821 BASE COUNT 218 a 189 c 237 g 177 t BASE COUNT 27 a 12 c 19 g 20 t 5825 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~|~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(~~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (-~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~au -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-UUC CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Por.spir.D 5903 bp RNA RNA 16-JUL-1994 DEFINITION Porphyra spiralis D.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis D. ORGANISM Porphyra spiralis D. REFERENCE 1 (bases 1 to 3004) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE amplifolia Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26176 DEFINITION Porphyra spiralis var. amplifolia DNA sequence. DEFINITION Porphyra spiralis var. amplifolia DNA sequence. ACCESSION L26176 NID g438857 KEYWORDS . SOURCE Porphyra spiralis (individual_isolate PSA-D/Sao Sebastiao, variety amplifolia) DNA. ORGANISM Porphyra spiralis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 985) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. 11, 195-207 (1994) MEDLINE 94224117 FEATURES Location/Qualifiers source 1..985 /organism="Porphyra spiralis" /isolate="PSA-D/Sao Sebastiao" /variety="amplifolia" /db_xref="taxon:31350" exon 1..46 intron 47..954 /evidence=experimental /label=Group_I_intron exon 955..985 BASE COUNT 253 a 225 c 285 g 222 t BASE COUNT 27 a 12 c 19 g 19 t 5826 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~|~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(~~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (-~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~au -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Por.spir.R 5903 bp RNA RNA 11-JAN-191 DEFINITION Porphyra spiralis var. amplifolia subsp. Porphyra spiralis R.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra spiralis var. amplifolia subsp. Porphyra spiralis R. ORGANISM Porphyra spiralis var. amplifolia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26177 LOCUS P.spir.amp.gb 2890 bp ds-DNA PLN 03-JAN-1994 DEFINITION Porphyra spiralis var. amplifolia DNA sequence. ACCESSION L26177 KEYWORDS . SOURCE Porphyra spiralis (individual_isolate PSA-R/Ilha do Cardoso, variety amplifolia) DNA. ORGANISM Porphyra spiralis Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 2890) AUTHORS Oliveira,M.C. and Ragan,M.A. TITLE Variant forms of a group I intron in nuclear small-subunit rRNA genes of the marine red alga Porphyra spiralis var. amplifolia JOURNAL Mol. Biol. Evol. (1994) In press STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..22 /note="PCR; putative" intron 1805..2860 /evidence=EXPERIMENTAL /label=Group_I_intron primer_bind complement(2864..2890) /note="PCR; putative" source 1..2890 /organism="Porphyra spiralis" /isolate="PSA-R/Ilha do Cardoso" /variety="amplifolia" /sequenced_mol="DNA" BASE COUNT 729 a 643 c 802 g 716 t ORIGIN BASE COUNT 470 a 389 c 491 g 485 t 4068 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----ccuuug 241 agaa<----- ---------- ---------- ---------- ---------- ----ucguac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ugcucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC G-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuc-gga g-ugcc-ucc acgcgc--u- gg-gu(cuau ---)gcccuc augc------ 1801 ---------- --------g- uauggg-g-- ---aguuugu cuccuuau-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcggu-g- cgugagggcc 2161 (uuaauu--- ---------- ---------- ---)ggcucu gcgc------ ---------- 2221 ----auucua gcugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AU UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGCACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gc ua--(-cacu uuca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----cgucc a-cg-uca-g ca-cccu--- ---------- ----auGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-uauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuua------ 5401 caguccu-gg gcc(gaaa-) ggcuc----g gguaac-cau uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGU-AGG (-UCAUCAC- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaag-- ugu-uugga- uugc-ggcu- gcug-ugaug ga-------- ---------- 5701 -------(cu ug----)--- ---------- ---------- --------uc caga-gua-- 5761 auagcc-gug -aaaa-|gau -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Por.subo.1 5903 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra suborbiculata. subsp. Porphyra suborbiculata isolate Kawatana Yamaguchi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. subsp. Porphyra suborbiculata isolate Kawatana Yamaguchi. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013180 LOCUS AB013180 2329 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra suborbiculata gene for small subunit rRNA, isolate Kawatana Yamaguchi. ACCESSION AB013180 NID g3298491 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra suborbiculata gametophyte DNA. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2329) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2329) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2329 /organism="Porphyra suborbiculata" /note="collection_site: Kawatana Yamaguchi" /db_xref="taxon:76158" /dev_stage="gametophyte" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2329 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1062 /note="putative" exon 1063..2329 /note="putative" /product="SSU rRNA" BASE COUNT 593 a 505 c 658 g 573 t BASE COUNT 461 a 387 c 501 g 486 t 4068 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuacuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----cuuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ugcccauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GC-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuc-ggg g-cgcg-ccc acgggc--c- gg-gc(uucu ---)gccuug uugc------ 1801 ---------- --------c- aguggg---- ---gguuugu ccccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- acguggu-gu guuc-ggggc 2161 (uucacu--- ---------- ---------- ---)gucuca gcac------ ---------- 2221 ---gca-a-a gcugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAGGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AU UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGCACU-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gg ca--(-auau uuua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GC|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------aac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCUU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 cagcccu-gg guc(ggaa-) ggccc----g gguaau-cuu uugaaa]--- ---------- 5461 -------aug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUA-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- ggug-ugaug g--------- ---------- 5701 -------(uu ucau--)--- ---------- ---------- ---------c caga-acg-- 5761 cuagcg-gug -agaa-|gcu -cauuaaauc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.subo.2 5903 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra suborbiculata.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra suborbiculata. ORGANISM Porphyra suborbiculata. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE SSU rDNA and morphological data Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB015796 LOCUS AB015796 2279 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra suborbiculata gene for small subunit rRNA, partial sequence. ACCESSION AB015796 NID g3986218 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra suborbiculata DNA. ORGANISM Porphyra suborbiculata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2279) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2279 /organism="Porphyra suborbiculata" /db_xref="taxon:76158" rRNA join(<1..555,1046..>2279) /product="small subunit rRNA" primer_bind 1..22 intron 556..1045 /note="intron-like structure" primer_bind 2260..2279 BASE COUNT 582 a 494 c 643 g 560 t BASE COUNT 452 a 378 c 488 g 471 t 4114 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA---- ---------- 61 --AA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuacuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----cuuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ugcccauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GC-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuc-ggg g-cgcg-ccc acgggc--c- gg-gc(uucu ---)gccuug uugc------ 1801 ---------- --------c- aguggg---- ---gguuugu ccccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- acguggu-gu guuc-ggggc 2161 (uucacu--- ---------- ---------- ---)gucuca gcac------ ---------- 2221 ---gcaaa-a gcugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAGGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AU UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGCACU-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gg ca--(-auau uuua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu u-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GC|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------aac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCUU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 c-gcccu-gg guc(ggaa-) ggccc----g gguaau-cuu uugaaa]--- ---------- 5461 -------aug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUA-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- ggug-ugaug g--------- ---------- 5701 -------(uu ucau--)--- ---------- ---------- ---------c caga-acg-- 5761 cuagcg-gug -agaa-|gcu -cauuaaauc uu-acc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAA- ---------- ---------- ---------- ---------- ---------- 5881 ----~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.KK 5903 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. subsp. Porphyra tenera isolate Kawaura Kumamoto. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013176 LOCUS AB013176 3589 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Kawaura Kumamoto. ACCESSION AB013176 NID g3298487 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3589) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3589 /organism="Porphyra tenera" /note="collection_site: Kawaura Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3589 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3559 /note="group I intron; putative" exon 3560..3589 /note="putative" /product="SSU rRNA" BASE COUNT 906 a 808 c 1019 g 856 t BASE COUNT 461 a 392 c 497 g 484 t 4069 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug uugc------ 1801 ---------- --------c- aguggg---- ---aguuugu cuccuuu--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg---gu gugcagggcc 2161 (uuuacu--- ---------- ---------- ---)gucuc- ugcgc----- ---------- 2221 -----guuua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuau uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-UGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.SK 5903 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra tenera.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera. ORGANISM Porphyra tenera. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013175 LOCUS AB013175 3766 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra tenera gene for small subunit rRNA, isolate Shinwa Kumamoto. ACCESSION AB013175 NID g3298480 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra tenera gametophyte thallus DNA. ORGANISM Porphyra tenera Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 3766) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..3766 /organism="Porphyra tenera" /note="collection_site: Shinwa Kumamoto" /db_xref="taxon:2785" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>3766 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..568 /note="putative" /product="SSU rRNA" intron 569..1540 /note="putative" exon 1541..2776 /note="putative" /product="SSU rRNA" intron 2777..3736 /note="group I intron; putative" exon 3737..3766 /note="putative" /product="SSU rRNA" BASE COUNT 942 a 858 c 1067 g 899 t BASE COUNT 461 a 392 c 497 g 484 t 4069 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug uugc------ 1801 ---------- --------c- aguggg---- ---aguuugu cuccuuu--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg---gu gugcagggcc 2161 (uuuacu--- ---------- ---------- ---)gucuc- ugcgc----- ---------- 2221 -----guuua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuau uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-UGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.T1 5903 bp RNA RNA 11-MAR-1997 DEFINITION Porphyra tenera strain T-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain T-1. ORGANISM Porphyra tenera strain T-1. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D86237 LOCUS D86237 2339 bp DNA PLN 11-MAR-1997 DEFINITION Red algae DNA for 18S rRNA. ACCESSION D86237 NID g1881402 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:T-1) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2339) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2339 /organism="Porphyra tenera" /strain="T-1" rRNA 1..2339 /product="18S rRNA" BASE COUNT 601 a 518 c 649 g 571 t BASE COUNT 459 a 389 c 492 g 483 t 4080 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUUGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug uugc------ 1801 ---------- --------c- aguggg---- ---aguuugu cucccuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- aaccg---gu gugcagggcc 2161 (uuuacu--- ---------- ---------- ---)gucucu ugcgc----- ---------- 2221 -----guuua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----A 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuuu uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu--g guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAG~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.T3 5903 bp RNA RNA 11-MAR-1997 DEFINITION Porphyra tenera strain TU-3.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain TU-3. ORGANISM Porphyra tenera strain TU-3. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax : 0543-34-9834) Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D86236 LOCUS D86236 2340 bp DNA PLN 11-MAR-1997 DEFINITION Red algae DNA for 18S rRNA. ACCESSION D86236 NID g1881401 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:TU-3) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2340) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Miyata,T., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA in Porphyra tenera (Bangiales, Rhodophyra) JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2340 /organism="Porphyra tenera" /strain="TU-3" rRNA 1..2340 /product="18S rRNA" BASE COUNT 601 a 521 c 649 g 569 t BASE COUNT 460 a 393 c 491 g 479 t 4080 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug uugc------ 1801 ---------- --------c- aguggg---- ---aguuugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg---gu gugcaggccc 2161 (uuuacu--- ---------- ---------- ---)gucuc- ugcgc----- ---------- 2221 -----guuua ccugcggacc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UCCAA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--AC|A--- UCUUCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAAAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuuu uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAG~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.ten.T8 5903 bp RNA RNA 13-FEB-1997 DEFINITION Porphyra tenera strain T8.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenera strain T8. ORGANISM Porphyra tenera strain T8. REFERENCE 1 (bases 1 to 3004) AUTHORS Saga,N. TITLE Direct Submission JOURNAL :0543-34-9834) Submitted (10-FEB-1997) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB000964 LOCUS AB000964 2302 bp DNA PLN 13-FEB-1997 DEFINITION Red algae 18S rRNA gene, partial sequence. ACCESSION AB000964 NID g1841309 KEYWORDS 18S rDNA. SOURCE Porphyra tenera (strain:T8) DNA. ORGANISM Porphyra tenera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2302) AUTHORS Saga,N. TITLE Direct Submission JOURNAL Submitted (10-FEB-1997) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Graduate School of Marine Science and Technology; 3-20-1 Orido, Shimizu, Shizuoka 424, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:0543-34-0411, Fax:0543-34-9834) REFERENCE 2 (sites) AUTHORS Yamazaki,S., Katsura,H., Jong-Ahm,S. and Saga,N. TITLE The taxonomic position based on the 18S rDNA sequence JOURNAL Unpublished (1997) FEATURES Location/Qualifiers source 1..2302 /organism="Porphyra tenera" /strain="T8" rRNA 1..2302 /partial /standard_name="18S rRNA gene" misc_feature 551..1061 /note="intron-like structure" BASE COUNT 587 a 505 c 644 g 566 t BASE COUNT 452 a 381 c 484 g 476 t 4110 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~CAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug uugc------ 1801 ---------- --------c- aguggg---- ---aguuugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg---gu gugcagggcc 2161 (uuuacu--- ---------- ---------- ---)gucuc- ugcgc----- ---------- 2221 -----guuua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuau uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-UGC-AGG (-UCAUCAA- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uugu-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUA~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.tenuip 5903 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra tenuipedalis.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra tenuipedalis. ORGANISM Porphyra tenuipedalis. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB015797 LOCUS AB015797 2299 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra tenuipedalis gene for small subunit rRNA, partial sequence. ACCESSION AB015797 NID g3986219 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra tenuipedalis DNA. ORGANISM Porphyra tenuipedalis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 2299) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..2299 /organism="Porphyra tenuipedalis" /db_xref="taxon:78446" rRNA join(<1..555,1066..>2299) /product="small subunit rRNA" primer_bind 1..22 intron 556..1065 /note="intron-like structure" primer_bind 2280..2299 BASE COUNT 586 a 509 c 644 g 560 t BASE COUNT 453 a 382 c 484 g 470 t 4114 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-G------- ---------U 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 agaa<----- ---------- ---------- ---------- ---------- ----caccac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-G-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-cc(uuua ---)gccuaa uuugc----- 1801 ---------- --------c- aguggg---- ---aguuugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg---gu guguggggac 2161 (uuuguu--- ---------- ---------- ---)gucuc- ugcgc----- ---------- 2221 -----guuua ccugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUA-UG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-ga ca--(-cuau uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG-GAAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cac ugcguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-ga guc(ggaa-) ggccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ucgga- ucgc-ggcu- gcug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umbi.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Porphyra umbilicalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis. ORGANISM Porphyra umbilicalis. REFERENCE 1 (bases 1 to 3004) AUTHORS Neefs et.al. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53500 LOCUS PTERRNAG 1770 bp ss-mRNA PLN 02-DEC-1991 DEFINITION P.umbilicalis small ribosomal RNA coding region ACCESSION X53500 KEYWORDS small subunit ribosomal RNA. SOURCE Porphyra umbilicalis RNA. ORGANISM Porphyra umbilicalis Eukaryota; Fungi; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 1770) AUTHORS Hendriks,L., De Baere,R., Van de Peer,Y., Neefs,J.M., Goris,A. and De Wachter,R. TITLE The evolutionary position of the rhodophyte Porphyra umbilicalis and the basidiomycete Leucosporidium scottii among other eukaryotes as deduced from complete sequence of small ribosomal subunit RNA JOURNAL J. Mol. Evol. 32, 167-177 (1991) STANDARD full automatic COMMENT *source: clone=pUC18; From EMBL entry PURRNAG; dated 17-OCT-1991. BASE COUNT 426 a 384 c 516 g 444 t ORIGIN BASE COUNT 426 a 384 c 516 g 444 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~U-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uua--cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-cg(uaa- ---)ugcgug cggcg----- 1801 ---------- ------c-u- ggggcg---- ---------- cgcuuuu--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ------gugg 2041 a--------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- ggcggc---- gcguuguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucg-- -----gcgcc acc------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AGCC AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- UuuC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------gag- aGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGC|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU U-CAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---AUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-a-g-gc au--(---ua c-ga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc u-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGU ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGGg c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gua gcuguu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cgccC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-cgcg- guug-a--gg cg-------- ---------- 5701 -------(uu ua----)--- ---------- ---------- --------cg cc----ug-- 5761 gccgca-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-Ga 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUC~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umbi.2 5903 bp RNA RNA 30-JUN-1994 DEFINITION Porphyra umbilicalis High Form. ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis High Form. ORGANISM Porphyra umbilicalis High Form. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26202 LOCUS PTEFRE 1819 bp DNA PLN 30-JUN-1994 DEFINITION Porphyra umbilicalis DNA fragment. ACCESSION L26202 NID g507795 KEYWORDS PCR amplified. SOURCE Porphyra umbilicalis (strain high-interdial form) DNA. ORGANISM Porphyra umbilicalis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1819) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1819 /organism="Porphyra umbilicalis" /strain="high-interdial form" /db_xref="taxon:2786" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1793..1819 /standard_name="PCR primer" /note="putative" BASE COUNT 471 a 369 c 485 g 493 t 1 others BASE COUNT 471 a 369 c 485 g 493 t 4085 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAC-cagu- uau-aguu-- ----ucuuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACRUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUGU-C AAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCU(---- ----auu)AG GU-CC-UCUA A-UUGGAAU- 1501 ------GAGA ----AGAACU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gaa g-cacg-cuc acgggg--g- cg-gu(uuuu ---)gcuguu ucug------ 1801 ---------- ------u-g- agggug---- ---------u cuucuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----ucugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg----u ugugcgggac 2161 (uugauu--- ---------- ---------- ---)gucucu gcac------ ---------- 2221 ---aucugcg ------ggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGGGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCU-A-UGA AUACGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGA------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- CcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------gga- gaa-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gg uuc-(----- aguu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -gaau-gauc c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUUACCAGG UC[cgg-aca 4081 gaau-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AC|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg u--acgcaug --------(c ucg----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uacu gcgugg---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----cuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUA-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGG-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuuu------ 5401 acguccu-ug guc(ggaa-) ggccc----g gguaau-cuu gugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUCC- 5641 gau-gaaa-- ugu-ucgga- uugu-ggcg- ugcg-ugaug ga-------- ---------- 5701 -------(ua u-----)--- ---------- ---------- --------cc caua-gcg-- 5761 uacguc-aug -aaaa-|guu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umbi.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Porphyra umbilicalis, isolate "Westport". ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis, isolate "Westport". ORGANISM Porphyra umbilicalis, isolate "Westport". REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L36049 LOCUS PTEWRRNA 1818 bp DNA PLN 31-AUG-1994 DEFINITION Porphyra umbilicalis small subunit ribosomal RNA (rDNA) gene. ACCESSION L36049 NID g533258 KEYWORDS PCR identification; ribosomal RNA; ribosomal RNA small subunit. SOURCE Porphyra umbilicalis (strain Westport (Nova Scotia)) DNA. ORGANISM Porphyra umbilicalis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1818) AUTHORS Oliveira,M.C., Kurniawan,J., Bird,C.J., Rice,E.L., Murphy,C.A., Singh,R.K., Gutell,R.R. and Ragan,M.A. TITLE An investigation of order Bangiales (Bangiophycidae, Rhodophyta) based on nuclear small-subunit ribosomal RNA gene sequences JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1818 /organism="Porphyra umbilicalis" /strain="Westport (Nova Scotia)" /db_xref="taxon:2786" primer_bind complement(1..22) /note="putative" primer_bind 1793..1818 /note="putative" BASE COUNT 470 a 369 c 486 g 493 t BASE COUNT 470 a 369 c 486 g 493 t 4085 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAC-cagu- uau-aguu-- ----ucuuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-G UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUGU-C AAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GGA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCU(---- ----auu)AG GU-CC-UCUA A-UUGGAAU- 1501 ------GAGA ----AGAACU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gaa g-cacg-cuc acgggg--g- cg-gu(uuuu ---)gcuguu ucug------ 1801 ---------- ------u-g- agggug---- ---------u cuucuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----ucugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg----u ugugcgggac 2161 (uugauu--- ---------- ---------- ---)gucucu gcac------ ---------- 2221 ---aucugcg ------ggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGGGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCU-A-UGA AUACGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGA------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- CcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------gga- gaa-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-a-gg uuc-(----- aguu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -gaau-gauc c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUUACCAGG UC[cgg-aca 4081 gaau-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AC|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg u--acgcaug --------(c ucg----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uacu gcgugg---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----cuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUA-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuuu------ 5401 acguccu-ug guc(ggaa-) ggccc----g gguaau-cuu gugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUCC- 5641 gau-gaaa-- ugu-ucgga- uugu-ggcg- ugcg-ugaug ga-------- ---------- 5701 -------(ua u-----)--- ---------- ---------- --------cc caua-gcg-- 5761 ugcguc-aug -aaaa-|guu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA -GGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Por.umbi.4 5903 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra umbilicalis. subsp. Porphyra umbilicalis isolate Nahant Mass.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra umbilicalis. subsp. Porphyra umbilicalis isolate Nahant Mass. ORGANISM Porphyra umbilicalis. REFERENCE 1 (bases 1 to 3004) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H . TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013179 LOCUS AB013179 1818 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra umbilicalis gene for small subunit rRNA, isolate Nahant Mass. ACCESSION AB013179 NID g3298490 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra umbilicalis gametophyte thallus DNA. ORGANISM Porphyra umbilicalis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 1818) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 1818) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1818 /organism="Porphyra umbilicalis" /note="collection_site: Nahant Mass" /db_xref="taxon:2786" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>1818 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..1818 /note="putative" /product="SSU rRNA" BASE COUNT 469 a 369 c 485 g 495 t BASE COUNT 469 a 369 c 485 g 495 t 4085 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAC-cagu- uau-aguu-- ----ucuuug 241 aacg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAGUG G)UCU-ACCA U-|GGUGU-C AAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCU(---- ----auu)AG GU-CC-UCUA A-UUGGAAU- 1501 ------GAGA ----AGAACU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gaa g-cacg-cuc acgggg--g- cg-gu(uuuu ---)gcuguu ucu------- 1801 ---------- ---------- -gugagggug ---------u cuucuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----ucugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcg----u ugugcgggac 2161 (uugauu--- ---------- ---------- ---)gucucu gcac------ ---------- 2221 ---auc---- --ugcgggcc ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGGGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCU-A-UGA AUACGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGA------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- CcuC|-UAUU 2821 -UU-GUUGGU -UU-CC---- ------gga- gaa-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --GGgau-ug gcg-g-g-gg uuc-(----- aguu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -gaau-gauc c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUUACCAGG UC[cgg-aca 4081 gaau-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AC|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg u--acgcaug --------(c ucg----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uacu gcgugg---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----cuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUA-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuuu------ 5401 acguccu-ug guc(ggaa-) ggccc----g gguaau-cuu gugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUU)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUCC- 5641 gau-gaaa-- ugu-ucgga- uugu-ggcg- ugcg-ugaug ga-------- ---------- 5701 -------(ua u-----)--- ---------- ---------- --------cc caua-gcg-- 5761 ugcguc-aug -aaaa-|guu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.varieg 5903 bp RNA RNA 10-DEC-1998 DEFINITION Porphyra variegata.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra variegata. ORGANISM Porphyra variegata. REFERENCE 1 (bases 1 to 3004) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB015792 LOCUS AB015792 1789 bp DNA PLN 10-DEC-1998 DEFINITION Porphyra variegata gene for small subunit rRNA, partial sequence. ACCESSION AB015792 NID g3986214 KEYWORDS small subunit rRNA; small subunit ribosomal RNA. SOURCE Porphyra variegata DNA. ORGANISM Porphyra variegata Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Yamazaki,S., Shimomura,K., Miyata,T. and Saga,N. TITLE Phylogeny of Porphyra (Bangiales, Rhodophyta) inferred from SSU rDNA and morphological data JOURNAL Unpublished (1999) REFERENCE 2 (bases 1 to 1789) AUTHORS Saga,N., Yamazaki,S. and Shimomura,K. TITLE Direct Submission JOURNAL Submitted (25-JUN-1998) to the DDBJ/EMBL/GenBank databases. Naotsune Saga, Tokai University, Center for Advanced Technology; 3-20-1, Orido, Shimizu, Shizuoka 424-8610, Japan (E-mail:nsaga@scc.u-tokai.ac.jp, Tel:+81-543-34-0411, Fax:+81-543-37-0947) FEATURES Location/Qualifiers source 1..1789 /organism="Porphyra variegata" /db_xref="taxon:78444" primer_bind 1..22 rRNA <1..>1789 /product="small subunit rRNA" primer_bind 1770..1789 BASE COUNT 450 a 377 c 492 g 470 t BASE COUNT 450 a 377 c 492 g 470 t 4114 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA---- ---------- 61 --AA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaccuuu ---------- -auac-ucgu aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-cguu-- ----ccuuug 241 ggga<----- ---------- ---------- ---------- ---------- ---cuuuugc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cgcucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CC-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(gauu ---)gccuuu g--------- 1801 ---------- -----ugcc- --ugggga-- ---gguuugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcgg---u guguggggac 2161 (uuuauu--- ---------- ---------- ---)guuucu gcgc------ ---------- 2221 ---gugaac- -cugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- Ucuc|-uAUU 2821 -UU-GUUGGU -UU-CC---- ------ggu- gAC-UGAGGA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuau uuga-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacc a-cg-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-gauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uacu gcguu----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUG-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg acc(ggaa-) ggucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-aaaa-- ugu-ccgga- uugu-ggcg- ccug-ugaug ga-------- ---------- 5701 -------(cu ug----)--- ---------- ---------- --------uc caga-gcg-- 5761 gaugcc-gcg -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAA~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezo.1 5903 bp RNA RNA 19-DEC-1995 DEFINITION Porphyra yezoensis.; . ACCESSION D79976 KEYWORDS . SOURCE Porphyra yezoensis. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Yamazaki,S., Kitade,Y., Maruyama,T. and Saga,N. TITLE Phylogenetic position of Porphyra yezoensis (Bangiales, Rhodophyta) based on the 18S rDNA JOURNAL J. Mar. Biotechnol. (1996) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D79976 Submitted (12-Dec-1995) to DDBJ by: Naotsune Saga Dept. of Marine Science Tokai University Orido 3-20-1 Shimizu, Shizuoka 424 Japan Phone: 0543-34-0411 E-mail: nsaga@simizugw.cc.u-tokai.ac.jp Fax: 0543-34-9834. NCBI gi: 1125635 BASE COUNT 458 a 395 c 491 g 479 t 4080 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug u--------- 1801 ---------- -----ugcc- aguggg---- ---aguuugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcgg---u gugcaggccc 2161 (uuuacu--- ---------- ---------- ---)gucucu gcgc------ ---------- 2221 ---guuuac- -cugcggacc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UCCAA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- Gcuc|-uAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUCCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuuu uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --CCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------cacu gcguu----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAG~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezo.2 5903 bp RNA RNA 09-JUL-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis isolate Hakodate Hokkaido.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis isolate Hakodate Hokkaido. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013177 LOCUS AB013177 2349 bp DNA PLN 09-JUL-1998 DEFINITION Porphyra yezoensis gene for small subunit rRNA, isolate Hakodate Hokkaido. ACCESSION AB013177 NID g3298488 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra yezoensis gametophyte thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2349) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2349) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2349 /organism="Porphyra yezoensis" /note="collection_site: Hakodate Hokkaido" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 precursor_RNA <1..>2349 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..566 /note="putative" /product="SSU rRNA" intron 567..1083 /note="putative" exon 1084..2349 /note="putative" /product="SSU rRNA" BASE COUNT 601 a 521 c 655 g 572 t BASE COUNT 460 a 392 c 497 g 483 t 4071 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug u--------- 1801 ---------- -----ugcc- aguggg---- ---aguuugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcgg---u gugcagggcc 2161 (uuuacu--- ---------- ---------- ---)gucucu gcgc------ ---------- 2221 ---guuuac- -cugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- Gcuc|-uAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuuu uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------cacu gcguu----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezo.3 5903 bp RNA RNA 17-JUL-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis isolate Ogatsu Miyagi. ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H TITLE the sequences of small subunit ribosomal RNA gene A discrimination of Porphyra species (Rhodophyta) based on JOURNAL Published Only in DataBase (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB013178 LOCUS AB013178 2858 bp DNA PLN 17-JUL-1998 DEFINITION Porphyra yezoensis gene for small subunit rRNA, isolate Ogatsu Miyagi. ACCESSION AB013178 NID g3298489 KEYWORDS small subunit ribosomal RNA; SSU rRNA. SOURCE Porphyra yezoensis gametophyte thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE A discrimination of Porphyra species (Rhodophyta) based on the sequences of small subunit ribosomal RNA gene JOURNAL Published Only in DataBase (1998) In press REFERENCE 2 (bases 1 to 2858) AUTHORS Kunimoto,M., Yamamoto,Y., Kaminishi,Y., Mizukami,Y. and Kito,H. TITLE Direct Submission JOURNAL Submitted (21-APR-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111, Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..2858 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="thallus" primer_bind 1..22 /note="PCR primer" precursor_RNA <1..>2858 /note="precursor of small subunit ribosomal RNA (SSU rRNA)" exon 23..566 /note="putative" /product="SSU rRNA" intron 567..1083 /note="putative" exon 1084..2319 /note="putative" /product="SSU rRNA" intron 2320..2828 /note="group I intron; putative" exon 2829..2858 /note="putative" /product="SSU rRNA" BASE COUNT 729 a 638 c 812 g 679 t BASE COUNT 460 a 392 c 497 g 483 t 4071 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -auac-ucgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----ccuuug 241 ggaa<----- ---------- ---------- ---------- ---------- ----caacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -uccucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GA(-GUAUUG G)UCU-ACCA U-|GGUGU-C GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAGGGG- -GCCC(---- ----uuu)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuc-gga g-cgcc-ccc acgggc--c- gg-gc(uuuu ---)gccuug u--------- 1801 ---------- -----ugcc- aguggg---- ---aguuugu cuccuuuu-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- acgcgg---u gugcagggcc 2161 (uuuacu--- ---------- ---------- ---)gucucu gcgc------ ---------- 2221 ---guuuac- -cugcgggcc gacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AGUAAAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------AA UGCC-U-UGA AUAUGU-GAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- Gcuc|-uAUU 2821 -UU-GUUGGU -UU-CC---- ------agu- gAC-CAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GAUGG-AAG- A-CGUACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AU| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --gggau-ug gcg-g-g-gg ca--(-cuuu uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugacu c-ug-uca-g ca-cccu--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 gaag-aauga uu-----gac aga(cugaaa g-c)------ ucuuu----- cuu-gauu-u 4141 uuuggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GU|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGGUg c--gcgcaug --------(c cag----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------cacu gcguu----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUG-C -G-C(----- 5041 --GUCUA-)G CGUA-U-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------cac uuga------ 5401 uaguccu-gg guc(ggaa-) ggcuc----g gguaau-cuu uugaaa]--- ---------- 5461 -------gug cau-c-g--- UGCU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezo.4 5903 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis OG-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis OG-1. ORGANISM Porphyra yezoensis OG-1. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB017078 LOCUS AB017078 1175 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: OG-1. ACCESSION AB017078 NID g3510354 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:OG-1) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1175) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1175 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /strain="OG-1" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,744..773) /note="putative" /product="small subunit ribosomal RNA" intron 219..743 /note="group I intron; putative" misc_feature 774..1120 /note="ITS1; putative" rRNA 1121..>1175 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 289 a 292 c 318 g 276 t BASE COUNT 60 a 60 c 66 g 62 t 5655 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~|~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(~~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~AUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezo.5 5903 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis. subsp. Porphyra yezoensis (strain:OG-4). ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis. subsp. Porphyra yezoensis (strain:OG-4). ORGANISM Porphyra yezoensis. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB017081 LOCUS AB017081 1170 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: OG-4. ACCESSION AB017081 NID g3510357 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:OG-4) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1170) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1170 /organism="Porphyra yezoensis" /note="collection_site: Ogatsu Miyagi" /strain="OG-4" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,733..762) /note="putative" /product="small subunit ribosomal RNA" intron 219..732 /note="group I intron; putative" misc_feature 763..1115 /note="ITS1; putative" rRNA 1116..>1170 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 287 a 287 c 316 g 280 t BASE COUNT 60 a 60 c 66 g 62 t 5655 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~|~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(~~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~AUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezo.6 5903 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis narawaensis cv. F6-1.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis narawaensis cv. F6-1. ORGANISM Porphyra yezoensis narawaensis cv. F6-1. REFERENCE 1 (bases 1 to 2340) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y . TITLE internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) A molecular divergence of ssu rRNA gene and ribosomal JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB017083 LOCUS AB017083 1176 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis narawaensis cv. F6-1 DNA, internal transcribed spacer 1 (ITS1). ACCESSION AB017083 NID g3510359 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (cultivar:F6-1) gametophyte vegetative DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1176) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1176 /organism="Porphyra yezoensis" /cultivar="F6-1" /note="forma: narawaensis" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="vegetative" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1121 /note="ITS1; putative" rRNA 1122..>1176 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 291 a 294 c 313 g 278 t BASE COUNT 60 a 60 c 66 g 62 t 5655 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~|~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(~~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~AUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezo.7 5903 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis NA-2.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis NA-2. ORGANISM Porphyra yezoensis NA-2. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB017075 LOCUS AB017075 1174 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: NA-2. ACCESSION AB017075 NID g3510351 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:NA-2) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1174) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1174 /organism="Porphyra yezoensis" /note="collection_site: Nanaehama Hakodate Hokkaido" /strain="NA-2" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1119 /note="ITS1; putative" rRNA 1120..1174 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 290 a 291 c 315 g 278 t BASE COUNT 60 a 60 c 66 g 62 t 5655 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~|~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(~~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~AUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Por.yezo.8 5903 bp RNA RNA 08-SEP-1998 DEFINITION Porphyra yezoensis NA-4.. ACCESSION No information KEYWORDS No information. SOURCE Porphyra yezoensis NA-4. ORGANISM Porphyra yezoensis NA-4. REFERENCE 1 (bases 1 to 2340) AUTHORS . Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AB017076 LOCUS AB017076 1175 bp DNA PLN 08-SEP-1998 DEFINITION Porphyra yezoensis DNA, internal transcribed spacer 1 (ITS1), strain: NA-4. ACCESSION AB017076 NID g3510352 KEYWORDS ssu rRNA; ITS1; 5.8S rRNA. SOURCE Porphyra yezoensis (strain:NA-4) gametophyte individual thallus DNA. ORGANISM Porphyra yezoensis Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (sites) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE A molecular divergence of ssu rRNA gene and ribosomal internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta) JOURNAL Unpublished (1998) REFERENCE 2 (bases 1 to 1175) AUTHORS Kunimoto,M., Yamamoto,Y., Kito,H., Kaminishi,Y. and Mizukami,Y. TITLE Direct Submission JOURNAL Submitted (21-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiko Kunimoto, National Fisheries University, Department of Food Science; Nagatahon-machi 2-7-1, Shimonoseki, Yamaguchi 759-6595, Japan (E-mail:jkunimo@fish-u.ac.jp, Tel:0832-86-5111(ex.421), Fax:0832-86-2292) FEATURES Location/Qualifiers source 1..1175 /organism="Porphyra yezoensis" /note="collection_site: Nanaehama Hakodate Hokkaido" /strain="NA-4" /db_xref="taxon:2788" /dev_stage="gametophyte" /tissue_type="individual thallus" rRNA join(<1..218,745..774) /note="putative" /product="small subunit ribosomal RNA" intron 219..744 /note="group I intron; putative" misc_feature 775..1120 /note="ITS1; putative" rRNA 1121..>1175 /note="putative" /product="5.8S ribosomal RNA" BASE COUNT 290 a 291 c 315 g 279 t BASE COUNT 60 a 60 c 66 g 62 t 5655 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|~~~~ ~~~~~)~~~~ ~~-|~~~~~~ 1621 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 1681 ~|~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~< 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ ~~~~~~~~~| ~~~~~~~(~~ 3121 ~~)~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~|~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3661 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4021 ~~~~~~~~|~ ~~~~~~~~~~ (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~[~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~]~~~~~~~~ |~~~~~~~~~ ~~~~~(~~~~ )~~~~~~~~~ ~~~(~~~~)~ 4201 ~~~|~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ |~~~|~~~~~ ~~~|~~~~~~ ~|~~~(~~~~ 4261 ~~)~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4321 ~~~~~~(~~~ ~~)[~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~]~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 5041 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~(~~~~~~ ~~~~)[~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~AUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUUGUA GG-CGC-AGG (-UCAUCAG- )CCUGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 gau-gaaa-- ugu-ccgga- ucgc-ggcu- agug-ugaug ga-------- ---------- 5701 -------(cu cg----)--- ---------- ---------- --------uc caga-gcg-- 5761 guagcc-gug -agaa-|gcu -cauuaaauc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU+------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS Porph.aeru 5903 bp RNA RNA 11-JAN-191 DEFINITION Porphyridum aerugineum. ACCESSION No information KEYWORDS No information. SOURCE Porphyridum aerugineum. ORGANISM Porphyridum aerugineum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L27635 LOCUS PPUDLRRNA 1773 bp ss-rRNA RNA 22-MAR-1994 DEFINITION Porphyridum aerugineum 16S-like ribosomal RNA (16S-like rRNA). ACCESSION L27635 KEYWORDS 16S-like rRNA; 16S-like ribosomal RNA. SOURCE Porphyridium aerugineum rRNA. ORGANISM Porphyridium aerugineum Eukaryota; Protista; Rhodophyta; Rhodophyceae; Bangiophycideae; Porphyridiales; Porphyridiacea. REFERENCE 1 (bases 1 to 1773) AUTHORS Leipe,D.D., Wainright,P.O., Gunderson,J.H., Porter,D., Patterson,D.J., Valois,F., Himmerich,S. and Sogin,M.L. TITLE The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis JOURNAL Phycologia (1994) In press STANDARD full automatic COMMENT NCBI gi: 463193 FEATURES Location/Qualifiers primer_bind 1..21 /note="these residues correspond to the 5' amplification primer and were not determined from the coding region" primer_bind 1750..1773 /note="these residues correspond to the 3' primer and were not determined from the coding region" source 1..1773 /organism="Porphyridium aerugineum" /sequenced_mol="rRNA" BASE COUNT 449 a 351 c 495 g 467 t 11 others ORIGIN BASE COUNT 449 a 351 c 495 g 467 t 4141 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- U-AUGA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaucu--uu ---------- -auac--ggu gaa]------ 181 -----|---A CU|G-CGRA- UGGCU-CAUU AAAA-cagu- cau-aauu-- ----uacuyg 241 auag<----- ---------- ---------- ---------- ---------- ---uaccuuu 301 u>ACUUGG-A UACCCCUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GACGGUA- 1141 GG(-GUAGUG G)CCU-ACCG U-|GGUGU-U UAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGYAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acg--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGGGAG- -ACC-(---- ---uuuu)-G GU-UG-ACCA C-UUGGAAY- 1501 ------GAGU ----ACAUUU -UAAA--UCA C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GW-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUAAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagaug-ggg c-ggug-gas auygug--c- ug-gg(gcaa ---)cucggu gygg------ 1801 ---------- ------u-g- uuccgc---- ---------c gccuucc--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----ucggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- uga--gc--- ggugcuggca 2161 (uuaagu--- ---------- ---------- ---)uguugg uagc------ ---------- 2221 ----guga-- ------gcgc cgac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCU-G-UGA AUACAU-UAG CAUGGGA|UA -UUGGAA-GA -AGC-----U 2581 UUUG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|uuAUU 2821 --C-GUUGGU -UG-AU---- -------ag- gCY-GGAAGC A--UGGUCAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --CGGGGGCA CU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGA-AAG- A-CGAACC-G CUGC(-GAAA )--GC|G--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --gggau-ug gug-g-a-cg uu--(---cc aaucu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------gacu c-ca-uca-g ca-cccu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUG-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-acg 4081 aagu-uagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uuuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-GA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGugg a--uugaauc --------(u ucg----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gau ugaaug---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------gaa- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-CCC-U -G-G(----- 5041 --GCAA--)C CAGG-A-GGA GGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[gcag cgagugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---accu-ug guc(ggaa-) ggccu----g gggaau-cuu gugaaa]--- ---------- 5461 -------aug cau-c-g--- UGCU-G-GGG AUAGAUUAU( UGUAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUUGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGGUCC- 5641 ggu-gaaa-- ugu-ucggc- cugu-gcuu- gcuu-u--gg g--------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------c uc----ug-- 5761 gcgagu-gcg -gaaa-|guu -cauuaaacc uu-auc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS R.maculata 5903 bp RNA RNA 11-JAN-191 DEFINITION Rhodella maculata. ACCESSION No information KEYWORDS No information. SOURCE Rhodella maculata. ORGANISM Rhodella maculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U21217 LOCUS RMU21217 1758 bp rRNA PLN 16-MAR-1995 DEFINITION Rhodella maculata 18S small subunit rRNA gene. ACCESSION U21217 KEYWORDS . SOURCE Rhodella maculata. ORGANISM Rhodella maculata Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Rhodophyta; Bangiophyceae; Porphyridiales; Porphyridiaceae; Rhodella. REFERENCE 1 (bases 1 to 1758) AUTHORS Waller,R.F. and McFadden,G.I. TITLE Morphological and cytochemical analysis of an unusual nucleus-pyrenoid association in a unicellular red alga JOURNAL Protoplasma 181 (1995) In press REFERENCE 2 (bases 1 to 1758) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (16-FEB-1995) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC, 3052, Australia COMMENT NCBI gi: 710401 FEATURES Location/Qualifiers source 1..1758 /strain="CCMP 736" /organism="Rhodella maculata" rRNA 1..1758 /product="18S small subunit rRNA" BASE COUNT 454 a 352 c 484 g 465 t 3 others ORIGIN BASE COUNT 454 a 352 c 484 g 465 t 4148 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(GGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgc-uuu ---------- uauac--ugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- ---uacugau 301 u>ACUCGG-A UAACCCAAG( -U-AAUU)CU UGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAGUG G)CUU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAUG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGUAGAGC- -GCC-(---- --cucgu)-G GU-GUCUCUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--AUU G-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gc---ugc ccggug--u- -a-gc(cacg ---)gcgaac gcc------- 1801 ---------- ------g-g- gug------- --------gg gccuucc--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----uucug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- gau-ucc--- ucugcacucu 2161 (uuacug--- ---------- ---------- ---)agucgg augg------ ---------- 2221 ----cguuc- --------ca ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGGA|UA -AUAGAA-UA -GGA-----C 2581 UUUG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GAAC|-UAUU 2821 -UU-GUUGGU -UU-GG---- -------gu- uac-gAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGGAU UCCGUUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 AGCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGgau-ca ggc-g-a-gc ----(--aca auugaa---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------acu c-gc-uug-g ca-cccc--- ---------- ----gaGG(- 3661 GAAA-)CCA- -AAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AGAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GN- GGU-G-CAUG |GAC|Gn-nC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-GA|- ---------- 4321 ------(--- --)[CCU-AC UAACUAGcug u--gggaau- --------(u ucg----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------au ucaccag--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------gag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUC-G -G-U(----- 5041 --UUUUA-)G CCGG-U-GGA AGAU-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguug--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -caccuu-gg cug(ggaa-) gccc-----g ggaaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- UGCU-G-GGG AUUGGUCUC( UGUAAGU-)G -GACCAUC-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGC-GCU (-UCAUCAG- )AGCGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 ggu-gaag-- cuc-uagga- ccga-guca- ugcg-agcug g--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------c uagc-uug-- 5761 cgugau-uug -gaaa-|uug -cgcuaaauu gu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)C~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.alsidii 5903 bp RNA RNA 30-JUN-1994 DEFINITION Stylonema alsidii. ACCESSION No information KEYWORDS No information. SOURCE Stylonema alsidii. ORGANISM Stylonema alsidii. REFERENCE 1 (bases 1 to 2340) AUTHORS Mark Ragan JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26204 LOCUS SYZFRA 1802 bp DNA PLN 30-JUN-1994 DEFINITION Stylonema alsidii DNA fragment. ACCESSION L26204 NID g507800 KEYWORDS PCR amplified. SOURCE Stylonema alsidii DNA. ORGANISM Stylonema alsidii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Bangiophyceae; Porphyridiales; Porphyridiaceae; Stylonema. REFERENCE 1 (bases 1 to 1802) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1802 /organism="Stylonema alsidii" /db_xref="taxon:35155" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1778..1802 /standard_name="PCR primer" /note="putative" BASE COUNT 482 a 362 c 468 g 489 t 1 others BASE COUNT 482 a 362 c 468 g 489 t 4102 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAG --UCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaa-auc ---------- uauau--ugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aauu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUUGG-A UAACCGUAG( -U-AAC-)CU AGAGC-UAA- UACRUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA U-|GGUGU-U CAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAACGGAG- -GCUU(---- ----uuc)AA GU-GU-CCGU C-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GUAA C---->CACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuc-ggg c-ccgg-gac acgguc--c- ug-gc(aaa- ---)gucagc gucu------ 1801 ---------- ------g-u- gucu------ -------ugg gccuuuu--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----uccug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- -cg-aac--- uuguccgcuc 2161 (uuaacu--- ---------- ---------- ---)gagugg gcuu------ ---------- 2221 ----ggu-ag -------uca ggac------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UUC AGCU-A-UGA AUACAC-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 UUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- GuuC|-UAUU 2821 -UU-GUUGGU -UU-CU---- ------agg- aCC-GAAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --GGgau-cg gua-g-c-uu cuu-(----- uuca-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---aau-aag c-ua-ucg-g ca-cccu--- ---------- ----aaGA(- 3661 GAAA-)UCA- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGC AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGcga c--gcgaau- --------(c uucg---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uau ucgcgg---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----acacg- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUC-C -G-U(----g 5041 auUACCA-)A CGGA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ucauccu-ug guc(ggaa-) ggccu----g gguaau-cuu uugaaa]--- ---------- 5461 -------uug cau-c-g--- UGCU-G-GGG AUAGAUUAU( UGGAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUUGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 ggu-gaaa-- ugu-ucgga- uugg-gacg- uaua-cugcc ggu------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------a cugg-cga-- 5761 uucguc-ccg -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUAG--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Florid 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Ahn.plicat 5903 bp RNA RNA 11-JAN-191 DEFINITION Ahnfeltia plicata. ACCESSION No information KEYWORDS No information. SOURCE Ahnfeltia plicata. ORGANISM Ahnfeltia plicata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14139 ID AP18SRRNG standard; DNA; PLN; 1765 BP. XX AC Z14139; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE A.plicata gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Ahnfeltia plicata OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Gigartinales; Phyllophoraceae. XX RN [1] RP 1-1765 RA Bird C.J., Murphy C.A., Rice E.L., Ragan M.A.; RT "The 18S rRNA gene sequences of four commercially important RT seaweeds"; RL Unpublished. XX RN [2] RP 1-1765 RA Ragan M.A.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL Ragan M. A., NRC Institute for Marine Biosciences, 1411 Oxford St, RL Halifax, Nova Scotia, Canada, B3H 3Z1 XX CC *source: is_macronuclear=N; CC *source: is_proviral=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1765 FT /product="18S ribosomal RNA" FT misc_feature 1..22 FT /note="PCR_primer" /citation= ([1]) FT misc_feature 1739..1765 FT /note="PCR_primer" /citation= ([1]) XX SQ Sequence 1765 BP; 418 A; 393 C; 531 G; 423 T; 0 other; BASE COUNT 418 a 393 c 531 g 423 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUCGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU --GACGUGA- 1141 AG(-GUAUUG U)CUU-CACG U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--UAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGC 1621 U-UGCGUA|U GUCAC--CGA UGAUG-CGG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-gggg-cgu cuggcg--g- ag-a-(guaa a--)ucuuug ucgg------ 1801 ---------- ------u-c- gcgc-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- ggc-gcg--- agcgggcggc 2161 (uuuacu--- ---------- ---------- ---)gucgcg cguu------ ---------- 2221 ----cgcggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuug------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|--UUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GCC-GAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAGACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-ga cu--(---ga a-uuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGgc g--ggcuauc --------(g cuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gau agua------ ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cugaC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaac-ccc --caaa]--- ---------- 5461 -------ccc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUA)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA GG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- acu-cggga- ccgc-gccg- acua-gcgcg u--------- ---------- 5701 -------(cu a-----)--- ---------- ---------- ---------a cgcg-uug-- 5761 guuguu-gug -gaaa-|cuu -guccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Amp.fragil 5903 bp RNA RNA 16-DEC-1996 DEFINITION Amphiroa fragilissima.. ACCESSION No information KEYWORDS No information. SOURCE Amphiroa fragilissima. ORGANISM Amphiroa fragilissima. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60744 LOCUS AFU60744 1728 bp DNA PLN 16-DEC-1996 DEFINITION Amphiroa fragilissima nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60744 NID g1732158 KEYWORDS . SOURCE Amphiroa fragilissima. ORGANISM Amphiroa fragilissima Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Amphiroideae; Amphiroa. REFERENCE 1 (bases 1 to 1728) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1728) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1728 /organism="Amphiroa fragilissima" /strain="Key Largo, FL, USA" rRNA <1..>1728 /product="18S ribosomal RNA" BASE COUNT 435 a 339 c 484 g 466 t 4 others BASE COUNT 435 a 339 c 484 g 466 t 4179 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguua-uuc ---------- -uu-a-uggc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuuca 241 guga<----- ---------- ---------- ---------- ---------- -ugacuuuac 301 u>AC-CGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acacuguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGUUA- 1141 AG(-GUAGUG U)CUU-AACA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUGGGGG- -AACC(---- ----uau)GG UU-CU-UCCA A-UUGGAAU- 1501 ------GAGA ----UCGAGC -UAAA--UAG C----caa-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauauu-ggc a-gcuc-cgg gagugu--g- cg-c-(gucg u--)gugugc gcuc------ 1801 ---------- ------agc- gggg-g---- --------uu gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- uugugug-ug augaagcauu 2161 (uuaauu--- ---------- ---------- ---)aaugaa cguc------ ---------- 2221 ----uaucgc g-------ac cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUCAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUGUAU-UAG CAUGGAA|UA -AUGGAA-UA -GGA-----c 2581 uuguuuc--- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uau|-UUGU 2821 -UG-GUUUGU -UG-UU---- ------GGG- AAC-GAG-UA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUGGAGG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 CUCCA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-gg au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUN|-N|N- NGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----aac aga(uugaga g-c)------ ucuuu----- uuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAggug g--cauuacc u-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gggu agu--guu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------gau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GGG-G -G-C(----- 5041 --GUCUA-)G CCCC-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucaa cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-aa cac(gaaa-) gugug----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA GG-CGC-AUG (-UCAUCAU- )CAUGC-G-C ACGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- ucug-agcg- gaaa-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguu-cgg -cgaa-|cuc -agucgaacc uu-auc-a-u uuag-AGGAA G~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Am.sp.PtAl 5903 bp RNA RNA 16-DEC-1996 DEFINITION Amphiroa sp. (Pt. Alfred, South Africa). ACCESSION No information KEYWORDS No information. SOURCE Amphiroa sp. (Pt. Alfred, South Africa). ORGANISM Amphiroa sp. (Pt. Alfred, South Africa). REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U62116 LOCUS ASU62116 1581 bp DNA PLN 16-DEC-1996 DEFINITION Amphiroa sp. nuclear 18S rRNA gene, partial sequence. ACCESSION U62116 NID g1732185 KEYWORDS . SOURCE Amphiroa sp. ORGANISM Amphiroa sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Amphiroideae; Amphiroa. REFERENCE 1 (bases 1 to 1581) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1581) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1581 /organism="Amphiroa sp." /strain="Pt. Alfred, South Africa" rRNA <1..>1581 /product="18S rRNA" BASE COUNT 407 a 304 c 440 g 427 t 3 others BASE COUNT 407 a 304 c 440 g 427 t 4325 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguua-uuc ---------- -uu-a-uggc aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuuca 241 guga<----- ---------- ---------- ---------- ---------- -ugacuuuac 301 u>AC-CGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acacuguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUGGGGG- -AACC(---- ----uau)GG UU-CU-UCCA A-UUGGAAU- 1501 ------GAGA ----UCGAGC -UAAA--UAG C----caa-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacauu-ggc a-auuc-cgg gagugu--g- cg-c-(gucg u--)gugugc acuc------ 1801 ---------- ------ugc- gggg-g---- --------uu gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- uugugug-ug augaagcauu 2161 (uuaauu--- ---------- ---------- ---)aaugaa cguc------ ---------- 2221 ----uaucgc a-------ac cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUCAGAGUGC UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUGAAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUGGAGG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 CUCCGAAAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-nn au--(----u ucgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ucGN(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----aac aga(uugaga g-c)------ ucuuu----- uuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAggug g--cauuacc u-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gggu agu--guu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------cau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GGG-G -G-C(----- 5041 --GUCUA-)G CCCC-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucaa cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-aa cac(gaaa-) gugug----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA GG-CGC-AUG (-UCAUC~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Am.sp.PtLo 5903 bp RNA RNA 16-DEC-1996 DEFINITION Amphiroa sp. (Pt. Lonsdale, Victoria, Australia). ACCESSION No information KEYWORDS No information. SOURCE Amphiroa sp. (Pt. Lonsdale, Victoria, Australia). ORGANISM Amphiroa sp. (Pt. Lonsdale, Victoria, Australia). REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U62115 LOCUS ASU62115 1727 bp DNA PLN 16-DEC-1996 DEFINITION Amphiroa sp. nuclear 18S rRNA gene, partial sequence. ACCESSION U62115 NID g1732184 KEYWORDS . SOURCE Amphiroa sp. ORGANISM Amphiroa sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Amphiroideae; Amphiroa. REFERENCE 1 (bases 1 to 1727) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1727) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1727 /organism="Amphiroa sp." /strain="Pt. Lonsdale, Victoria, Australia" rRNA <1..>1727 /product="18S rRNA" BASE COUNT 429 a 340 c 480 g 466 t 12 others BASE COUNT 429 a 340 c 480 g 466 t 4188 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguua-uuc ---------- -uu-a-uggc gaa]------ 181 -----|---A CU|G-UGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuuca 241 guga<----- ---------- ---------- ---------- ---------- -ugacuuuac 301 u>AC-CGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acacuguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUGuu gAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUGGGGG- -AACC(---- ----uau)GG UU-CU-UCCA A-UUGGAAU- 1501 ------GAGA ----UCGAGC -UAAA--UAG C----caa-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacauu-ggu g-auuc-cgg gagugu--g- cg-c-(gucg u--)gugugc acuc------ 1801 ---------- ------ugc- gggg-g---- --------uu gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- uugugug-ug augaagcauu 2161 (uuaauu--- ---------- ---------- ---)aaugaa cguc------ ---------- 2221 ----uaucgc a-------ac cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUCAGAGUGC UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUGAAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UNNNNNN-NN -NN-G(GU-G AAA---)UUC U-UGGA-U-U 3061 CUCCA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----aac aga(uugaga g-c)------ ucuuu----- uuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAggug g--cguuacc u-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gggu agu--guu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------cau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GGG-G -G-C(----- 5041 --GUCUA-)G CCCC-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucaa cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-aa cgc(gaaa-) gugug----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA GG-CGCGAUG (-UCAUCAU- )CAUGC-G-C CUGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- ucug-agcg- gaaa-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguu-cgg -cgaa-|nuc -agucgaacc uu-auc-a-u uuag-AGGNA G~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ano.furcel 5903 bp RNA RNA 11-JAN-191 DEFINITION Anotrichium furcellatum. ACCESSION No information KEYWORDS No information. SOURCE Anotrichium furcellatum. ORGANISM Anotrichium furcellatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U32561 LOCUS AFU32561 1772 bp DNA PLN 17-AUG-1995 DEFINITION Anotrichium furcellatum small-subunit ribosomal RNA, partial sequence. ACCESSION U32561 KEYWORDS . SOURCE Anotrichium furcellatum. ORGANISM Anotrichium furcellatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Ceramiaceae; Anotrichium. REFERENCE 1 (bases 1 to 1772) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1772) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945167 FEATURES Location/Qualifiers source 1..1772 /organism="Anotrichium furcellatum" /isolate="2600A3" primer_bind 1..20 /note="5' PCR primer" rRNA <1..>1772 /product="small-subunit ribosomal RNA" primer_bind complement(1745..1772) /note="3' PCR primer" BASE COUNT 447 a 373 c 493 g 459 t ORIGIN BASE COUNT 447 a 373 c 493 g 459 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CUAG|-GACU AA-GCCAUGC A-AGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-cuu ---------- -au-a-uaac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 ggg-<----- ---------- ---------- ---------- ---------- ---auaauac 301 u>ACUCGG-A UAUCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gccccguuc -aa|auuucu ga|--CCU-A UCA--ACUUC G-GACGGUA- 1141 GG(-GUAGUG U)CCU-ACCG U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCG-G( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGGGG- -GCCC(---- ----aac)GG GC-UU-CCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CGG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-ggcg-ccg ugauuu--g- uc-c-(gcga ---)ggauga uuuua----- 1801 ---------- ------c-g- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- augauggugc 2161 (uuuauu--- ---------- ---------- ---)gccucg ucau------ ---------- 2221 ----gucacc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-AUUGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- guCU|-UAUU 2821 -CU-GUUGGU -UU-GU---- ------UAA- GUU-CAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UA|--- 3421 --gggau-cg ggc-g-u-ug cu--(----u auaau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ugc-a c-gc-ucg-g ca-ccuu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[agg-aca 4081 ucau-aagga uu-----aac aga(uugaga g-c)------ ucuuu----- uuu-gauu-u 4141 gauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGA-GC UAAUUAcacg a--ccuuga- --------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------uc aaguaacaac ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------ugu- gc-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------A AUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-aa ugc(gaga-) gcacu----a ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUUGAGGCU( UGCAAUUC)U CCCUCCUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uugga- gggc-uagu- ugaa-cugu- ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- -aca-gau-- 5761 uuucug-gcc -caaa-|auu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Apo.lyalli 5903 bp RNA RNA 14-SEP-1998 DEFINITION Apophlaea lyallii.. ACCESSION No information KEYWORDS No information. SOURCE Apophlaea lyallii. ORGANISM Apophlaea lyallii. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Molecular systematic analyses indicate that the enigmatic Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF076996 LOCUS AF076996 1777 bp DNA PLN 14-SEP-1998 DEFINITION Apophlaea lyallii small subunit ribosomal RNA gene, complete sequence. ACCESSION AF076996 NID g3598964 KEYWORDS . SOURCE Apophlaea lyallii. ORGANISM Apophlaea lyallii Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Apophlaea. REFERENCE 1 (bases 1 to 1777) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Molecular systematic analyses indicate that the enigmatic Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1777) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (09-JUL-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1777 /organism="Apophlaea lyallii" /db_xref="taxon:79259" primer_bind 1..20 /note="Hild1" rRNA 21..1749 /note="nuclear SSU rRNA" /product="small subunit ribosomal RNA" primer_bind complement(1750..1777) /note="G07" BASE COUNT 440 a 371 c 513 g 453 t BASE COUNT 440 a 371 c 513 g 453 t 4126 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~G --UCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaggaa-auu ---------- -uu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU ACAA-cagu- aau-aauc-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- --uacauuac 301 u>AGACGG-A UAUCCCUGG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuu -ga|auuucu ga|--CCU-A UCA--AGUUU U-GAUGGUA- 1141 AG(-AUAGAG U)CUU-ACCA U-|GCUAG-U GAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAACU-ACCC -AAUCCU-A( ---acu--)C 1321 AGGG-A-GGU -|G|GUGACA AAGA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUGGAGG- -GGCC(---- ----auc)GG CU-CU-UCUA C-UUGGAAU- 1501 ------GAGU ----ACAGAG -UAAA--CAA U-----UU-A A-CGA-GAAC C---->AAUA 1561 GGAG|GG-CA A-GC-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UA-|CUCCUA 1621 G-GGUGUU|U GUUCA--CAG UGCUG-CAG| UUA--AAAAG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuauggg c-uggg-cgg cggugu--g- gg-c-(gcaa ---)gccugu guug------ 1801 ---------- ------u-c- gcucg----- --------gc ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag uugccug--- gagugagguc 2161 (uuaauc--- ---------- ---------- ---)agcuuu gcuc------ ---------- 2221 ----caggcg --------uc cccc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUGAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 -------AUG AGCC-G-UGA AUACCA-UAG CAUGGAA|UA -AUAGAA-UA -GGG-----c 2581 cguggc---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -GCC|-UAUU 2821 -UU-GUUGGU -UU-CG---- ------AGG- UGC-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UGCAUCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GAUGU-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUAAG AAC|UG|--- 3421 --GGgau-cg gaa-g-a-gu auuu(----u uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-cu-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-AG UAGCUAggag a--cuggugc a-------(u uca----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ugua ccu--gcuu- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucuc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUACACG]- --|------- ---------- GACU-GCU-G -G-C(----- 5041 --GAAUA-)G UCAG-C-GGA AGCC-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-UGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCAGU----- ---------- 5281 ---(------ ----)[ccac cgggcga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug gcc(gaaa-) gguuu----u ccggac-ccc --uaaa]--- ---------- 5461 -------ucu gcu-c-g--- UGCU-G-GGG AUGGAGGCU( UGCAAUUG)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGAGGA- 5641 ggu-gagg-- acu-uggga- ggug-cucg- uucg-gacac ---------- ---------- 5701 -------(uu ucc---)--- ---------- ---------- ---------- gugu-cug-- 5761 agcugg-cgc -ugaa-|cuc -guucgaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Are.conges 5903 bp RNA RNA 11-JAN-191 DEFINITION Areschougia congesta. ACCESSION No information KEYWORDS No information. SOURCE Areschougia congesta. ORGANISM Areschougia congesta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09613 LOCUS ACU09613 1775 bp DNA PLN 07-DEC-1994 DEFINITION Areschougia congesta small-subunit rRNA gene. ACCESSION U09613 KEYWORDS ribosomal RNA small subunit. SOURCE Areschougia congesta. ORGANISM Areschougia congesta Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Areschougia. REFERENCE 1 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1775) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595305 FEATURES Location/Qualifiers source 1..1775 /organism="Areschougia congesta" /isolate="VOUCHER GWS-G0006" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1775 /product="small-subunit rRNA" primer_bind complement(1748..1775) /note="PCR 3' end primer" BASE COUNT 426 a 379 c 533 g 436 t 1 others ORIGIN BASE COUNT 426 a 379 c 533 g 436 t 4129 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacgac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggcg-acc uggggc--g- uc-u-(ucac ---)ggacgg gucca----- 1801 ---------- ------g-g- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccgguggagc 2161 (uucacu--- ---------- ---------- ---)gcguca ccgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- cucc|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg grc-a-g-ga cu--(---gu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gauuacc u-------(u cu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------aggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcacu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-ugggg- ggga-aaga- ugga-cugu- ---------- ---------- 5701 -------(gu uu----)--- ---------- ---------- ---------- --ca-cggac 5761 cgucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Art.filicu 5903 bp RNA RNA 16-DEC-1996 DEFINITION Arthrocardia filicula.. ACCESSION No information KEYWORDS No information. SOURCE Arthrocardia filicula. ORGANISM Arthrocardia filicula. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61258 LOCUS AFU61258 1742 bp DNA PLN 16-DEC-1996 DEFINITION Arthrocardia filicula nuclear 18S rRNA gene, partial sequence. ACCESSION U61258 NID g1732173 KEYWORDS . SOURCE Arthrocardia filicula. ORGANISM Arthrocardia filicula Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Arthrocardia. REFERENCE 1 (bases 1 to 1742) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1742) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1742 /organism="Arthrocardia filicula" /strain="South Africa" rRNA <1..>1742 /product="18S rRNA" BASE COUNT 426 a 344 c 455 g 424 t 93 others BASE COUNT 426 a 344 c 455 g 424 t 4254 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uu-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-auuu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- ---uuuuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---auu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-auuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc auuu------ 1801 ---------- ------g-ca ggggu----- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- caugcguggg augaggcaac 2161 (uuuauu--- ---------- ---------- ---)gucgaa cguc------ ---------- 2221 ---ccuacgc a-------ac cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUAUAU-UAG CAUGGAA|UA -AUAGA---A -NNN-----n 2581 nnnn------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- nNNN|-NNNN 2821 -NN-NNNNNN -NN-NN---- ------NNN- NNN-NNNNNN N--NNNNNNN NN--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 --NNNNNNNN NN|--NNNNN NNNNNNN-NN -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACUAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----- uacg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-C-NN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc --------(a uuuu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cau(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAUGGU( UGCAAUUU)U CUGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- uugu-gaug- gaaa-gagcg ---------- ---------- 5701 -------(au u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 uccguc-gug -agaa-|cuc -agucgaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAAC~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Aud.amphir 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella amphiroae.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella amphiroae. ORGANISM Audouinella amphiroae. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079785 LOCUS AF079785 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella amphiroae small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079785 NID g3406781 KEYWORDS . SOURCE Audouinella amphiroae. ORGANISM Audouinella amphiroae Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella amphiroae" /db_xref="taxon:79935" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 427 a 376 c 517 g 450 t BASE COUNT 427 a 376 c 517 g 450 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg g-cagc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- ggggug---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uuugcu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc uu--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAggag c--cguuac- --------(c uuug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.arcuat 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella arcuata.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella arcuata. ORGANISM Audouinella arcuata. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079786 LOCUS AF079786 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella arcuata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079786 NID g3406782 KEYWORDS . SOURCE Audouinella arcuata. ORGANISM Audouinella arcuata Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella arcuata" /db_xref="taxon:69141" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 429 a 385 c 515 g 442 t BASE COUNT 429 a 385 c 515 g 442 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCAU(---- ---uuau)AU GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- gggacg---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcguuguggc 2161 (uucacu--- ---------- ---------- ---)gucgca gcgc------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uacg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAgggg c--cgcuac- --------(a uuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugucc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- ccgc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -gaaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.aspara 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella asparagopsis.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella asparagopsis. ORGANISM Audouinella asparagopsis. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079795 LOCUS AF079795 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella asparagopsis small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079795 NID g3406791 KEYWORDS . SOURCE Audouinella asparagopsis. ORGANISM Audouinella asparagopsis Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella asparagopsis" /db_xref="taxon:79936" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 428 a 378 c 518 g 447 t BASE COUNT 428 a 378 c 518 g 447 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg g-cagc-ccg ugcugu--g- cg-c-(guaa u--)gcgugc ggcg------ 1801 ---------- ------c-u- ggggug---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uuugcu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAggag c--cguuac- --------(c auug-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u ccuaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg c--------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------g cgcu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.caespi 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella caespitosa.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella caespitosa. ORGANISM Audouinella caespitosa. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079787 LOCUS AF079787 1769 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella caespitosa small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079787 NID g3406783 KEYWORDS . SOURCE Audouinella caespitosa. ORGANISM Audouinella caespitosa Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1769) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1769) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Audouinella caespitosa" /db_xref="taxon:79937" primer_bind 1..20 /note="G01" rRNA 21..1741 /product="small subunit ribosomal RNA" primer_bind complement(1742..1769) /note="G07 complement" BASE COUNT 430 a 376 c 511 g 452 t BASE COUNT 430 a 376 c 511 g 452 t 4134 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)U 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg a-cagc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- gggaug---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAggag c--cguuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cuac-ugug- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.dasyae 5903 bp RNA RNA 11-JAN-191 DEFINITION Audouinella dasyae. ACCESSION No information KEYWORDS No information. SOURCE Audouinella dasyae. ORGANISM Audouinella dasyae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26181 LOCUS AUDFRA 1771 bp ds-DNA PLN 30-JUN-1994 DEFINITION Audouinella dasyae DNA fragment. ACCESSION L26181 KEYWORDS PCR primer. SOURCE Audouinella dasyae DNA. ORGANISM Audouinella dasyae Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Acrochaetiales; Acrochaetiaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507221 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" source 1..1771 /organism="Audouinella dasyae" /sequenced_mol="DNA" BASE COUNT 434 a 375 c 514 g 448 t BASE COUNT 434 a 375 c 514 g 448 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUUCU-G( ---aca--)C 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg g-cagc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- gggaug---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uuggga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAggag c--cguuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcuccug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Aud.davies 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella daviesii.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella daviesii. ORGANISM Audouinella daviesii. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079788 LOCUS AF079788 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella daviesii small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079788 NID g3406784 KEYWORDS . SOURCE Audouinella daviesii. ORGANISM Audouinella daviesii Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella daviesii" /db_xref="taxon:79938" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 430 a 375 c 516 g 449 t BASE COUNT 430 a 375 c 516 g 449 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg g-cagc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- gggaug---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uuugcu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAggag u--cguuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.endoph 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella endophytica.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella endophytica. ORGANISM Audouinella endophytica. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079789 LOCUS AF079789 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella endophytica small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079789 NID g3406785 KEYWORDS . SOURCE Audouinella endophytica. ORGANISM Audouinella endophytica Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella endophytica" /db_xref="taxon:79939" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 432 a 380 c 510 g 448 t BASE COUNT 432 a 380 c 510 g 448 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AUAA-cagu- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U UAC|GGGU-C A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUUCU-G( ---aca--)C 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg a-cggc-ccg ugcugu--g- cg-c-(guaa u--)gcgugc ggcg------ 1801 ---------- ------c-u- ggggug---- ---------u ccuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- caug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAggag c--cguuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ggc(gaaa-) gcucu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- ccgc-uacg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgca-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.herman 5903 bp RNA RNA 24-JUL-1998 DEFINITION Audouinella hermannii.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella hermannii. ORGANISM Audouinella hermannii. REFERENCE 1 (bases 1 to 2340) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026040 LOCUS AF026040 1771 bp DNA PLN 24-JUL-1998 DEFINITION Audouinella hermannii 18S small subunit ribosomal ribosomal RNA gene, complete sequence. ACCESSION AF026040 NID g2564923 KEYWORDS . SOURCE Audouinella hermannii. ORGANISM Audouinella hermannii Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 3 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella hermannii" /isolate="G0164" /db_xref="taxon:31360" /note="synonym: Audouinella violacea" primer_bind 1..20 /note="primer G01" rRNA 1..1771 /product="18S small subunit ribosomal rRNA" primer_bind complement(1744..1771) /note="primer G07" BASE COUNT 427 a 387 c 518 g 439 t BASE COUNT 427 a 387 c 518 g 439 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCAU(---- ---uuau)AU GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- ggggcg---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----- uacg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugucc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -gaaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.pectin 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella pectinata.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella pectinata. ORGANISM Audouinella pectinata. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079790 LOCUS AF079790 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella pectinata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079790 NID g3406786 KEYWORDS . SOURCE Audouinella pectinata. ORGANISM Audouinella pectinata Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella pectinata" /db_xref="taxon:79940" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 430 a 378 c 515 g 448 t BASE COUNT 430 a 378 c 515 g 448 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg g-cagc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- gggaug---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- acgucguggc 2161 (uuugcu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- cuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------CAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGag c--cguuau- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------au agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg c--------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------g cgcu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.proska 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella proskaueri.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella proskaueri. ORGANISM Audouinella proskaueri. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079791 LOCUS AF079791 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella proskaueri small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079791 NID g3406787 KEYWORDS . SOURCE Audouinella proskaueri. ORGANISM Audouinella proskaueri Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella proskaueri" /db_xref="taxon:79941" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 430 a 376 c 516 g 449 t BASE COUNT 430 a 376 c 516 g 449 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg g-cagc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- gggaug---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- acgucguggc 2161 (uuugcu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGag c--cguuau- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------au agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg c--------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------g cgcu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.rhizoi 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella rhizoidea.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella rhizoidea. ORGANISM Audouinella rhizoidea. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079792 LOCUS AF079792 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella rhizoidea small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079792 NID g3406788 KEYWORDS . SOURCE Audouinella rhizoidea. ORGANISM Audouinella rhizoidea Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella rhizoidea" /db_xref="taxon:79942" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 431 a 376 c 513 g 450 t BASE COUNT 431 a 376 c 513 g 450 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)U 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg a-cagc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- ggggug---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- aggcggc--- gcgucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGag c--cguuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.secund 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella secundata.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella secundata. ORGANISM Audouinella secundata. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079784 LOCUS AF079784 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella secundata small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079784 NID g3406780 KEYWORDS . SOURCE Audouinella secundata. ORGANISM Audouinella secundata Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella secundata" /db_xref="taxon:79943" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 427 a 384 c 517 g 443 t BASE COUNT 427 a 384 c 517 g 443 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCAU(---- ---uuau)AU GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- ggggcg---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcguuguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uacg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cgcuac- --------(a uuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugucc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uc ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -gaaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.tenue 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella tenue.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella tenue. ORGANISM Audouinella tenue. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079796 LOCUS AF079796 1771 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella tenue small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079796 NID g3406792 KEYWORDS . SOURCE Audouinella tenue. ORGANISM Audouinella tenue Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Audouinella tenue" /db_xref="taxon:79944" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 428 a 384 c 516 g 443 t BASE COUNT 428 a 384 c 516 g 443 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCAU(---- ---uuau)AU GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-u- gggacg---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uuuacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uacg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgu c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugucc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -gaaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Aud.tetras 5903 bp RNA RNA 10-AUG-1998 DEFINITION Audouinella tetraspora.. ACCESSION No information KEYWORDS No information. SOURCE Audouinella tetraspora. ORGANISM Audouinella tetraspora. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079793 LOCUS AF079793 1770 bp DNA PLN 10-AUG-1998 DEFINITION Audouinella tetraspora small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079793 NID g3406789 KEYWORDS . SOURCE Audouinella tetraspora. ORGANISM Audouinella tetraspora Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Audouinella. REFERENCE 1 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Audouinella tetraspora" /db_xref="taxon:79945" primer_bind 1..20 /note="G01" rRNA 21..1742 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="G07 complement" BASE COUNT 433 a 375 c 512 g 449 t 1 others BASE COUNT 433 a 375 c 512 g 449 t 4134 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUUCU-G( ---aca--)C 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg g-cagc-ccg ugcugu--g- cg-c-(guan u--)gcgugc ggcg------ 1801 ---------- ------c-u- gggaug---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGag c--cguuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcu-gu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuc- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Bat.boryan 5903 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum boryanum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum boryanum. ORGANISM Batrachospermum boryanum. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026044 LOCUS AF026044 1765 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum boryanum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026044 NID g2564927 KEYWORDS . SOURCE Batrachospermum boryanum. ORGANISM Batrachospermum boryanum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Batrachospermum boryanum" /db_xref="taxon:67905" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 424 a 380 c 523 g 438 t BASE COUNT 424 a 380 c 523 g 438 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uu- ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-ccg ggcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-g- gggcg----- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uuugcu--- ---------- ---------- ---)guugcg ggug------ ---------- 2221 ---ugccggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcu-guc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- acu-uggga- cugc-ugcg- auug-ggg-- ---------- ---------- 5701 -------(uu aauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccacg-gug -ggaa-|cuu -guccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Bat.gelati 5903 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum gelatinosum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum gelatinosum. ORGANISM Batrachospermum gelatinosum. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026045 LOCUS AF026045 1765 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum gelatinosum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026045 NID g2564928 KEYWORDS . SOURCE Batrachospermum gelatinosum. ORGANISM Batrachospermum gelatinosum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Batrachospermum gelatinosum" /db_xref="taxon:69143" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 425 a 382 c 522 g 436 t BASE COUNT 425 a 382 c 522 g 436 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uu- ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-ccg ggcugu--g- cg-c-(guaa u--)gcgugu ggcg------ 1801 ---------- ------c-g- gggcg----- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uuaacu--- ---------- ---------- ---)guugcg ggug------ ---------- 2221 ---ugccggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcu-guc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- acu-uggga- cugc-ugcg- aucg-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgcg-gug -ggaa-|cuu -guccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Bat.helmin 5903 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum helminthosum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum helminthosum. ORGANISM Batrachospermum helminthosum. REFERENCE 1 (bases 1 to 2340) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026046 LOCUS AF026046 1766 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum helminthosum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026046 NID g2564929 KEYWORDS . SOURCE Batrachospermum helminthosum. ORGANISM Batrachospermum helminthosum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1766) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1766) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1766 /organism="Batrachospermum helminthosum" /db_xref="taxon:67907" primer_bind 1..20 rRNA 1..1766 /product="18S rRNA" primer_bind complement(1739..1766) BASE COUNT 424 a 386 c 518 g 438 t BASE COUNT 424 a 386 c 518 g 438 t 4137 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uu- ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uucu)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-ccg ggcugu--g- cg-c-(guaa u--)gcgugc ggcg------ 1801 ---------- ------c-g- gggcg----- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- uggcggc--- cgcucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg ggug------ ---------- 2221 ---ugucggc g--------c cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----- uaua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcu-guu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Bat.louisi 5903 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum louisianae.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum louisianae. ORGANISM Batrachospermum louisianae. REFERENCE 1 (bases 1 to 2340) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026047 LOCUS AF026047 1835 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum louisianae 18S ribosomal RNA gene, complete sequence. ACCESSION AF026047 NID g2564930 KEYWORDS . SOURCE Batrachospermum louisianae. ORGANISM Batrachospermum louisianae Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1835 /organism="Batrachospermum louisianae" /db_xref="taxon:67908" primer_bind 1..20 rRNA 1..1835 /product="18S rRNA" primer_bind complement(1808..1835) BASE COUNT 342 a 316 c 384 g 328 t 465 others BASE COUNT 342 a 316 c 384 g 328 t 4533 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uc- ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uucu)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGN -NNNN--NNN N-----NN-N N-NNN-NNNN N---->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|NNNNNN 1621 N-NNNNNN|N NNNNN--NNN NNNNN-NNN| NNN--NNNNN NNNNNNNNNN |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 nnnnnn-nnn n-nnnn-nnn nnnnnn--n- nn-n-(nnnn n--)nnnnnn nnnn------ 1801 ---------- ------n-n- nnnn-n---- ---------n nnnnnn---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----nnnnn 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------n- nnnnnnn--- nnnnnnnnnn 2161 (nnnnnn--- ---------- ---------- ---)nnnnnn nnnn------ ---------- 2221 ----nnnnnn --------nn nnnn------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --NNNNNNNN NN-NNNN--N 2461 NNNNNNNNNN NN-NN-NN-N NNNNN----- ---------- ---------- ---------- 2521 --------NN NNNN-N-NNN NNNNNN-NNN NNNNNNN|NN -NNNNNN-NN -NNN-----n 2581 nnnn------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 --nNN|NNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 2821 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNN->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 --NNNNNNNN NN|--NNNNN NNNNNNN-NN -NNNN(NN-N NNN---)NNN N-NNNN-N-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----- caug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcu-gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --yaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUC)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- ccgu-ugcg- auug-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-ccg-- 5761 gccgcg-aug -ggaa-|cuu -auccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Bat.macros 5903 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum macrosporum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum macrosporum. ORGANISM Batrachospermum macrosporum. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026048 LOCUS AF026048 1770 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum macrosporum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026048 NID g2564931 KEYWORDS . SOURCE Batrachospermum macrosporum. ORGANISM Batrachospermum macrosporum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1770) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Batrachospermum macrosporum" /db_xref="taxon:67909" primer_bind 1..20 rRNA 1..1770 /product="18S rRNA" primer_bind complement(1743..1770) BASE COUNT 428 a 393 c 519 g 430 t BASE COUNT 428 a 393 c 519 g 430 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uc- ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagu- uau-aguu-- ----ucuucg 241 augu<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-AUCA U-|GGUUG-U GAC|AGGU-G A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCU-A( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGC(---- ---auau)GC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACACGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauguu-ggc a-cggg-ccg ggcugu--g- cg-c-(guca u--)gcgugc ggcc------ 1801 ---------- ------acgg gacg------ ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- uggcggc--- cgcacguggc 2161 (uuaauu--- ---------- ---------- ---)guugcg ggcgu----- ---------- 2221 ----gccggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAGA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACGU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------CAG- UGG-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UC|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--ggguacc --------(c gugu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcu-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- ccgc-cacg- accg-ggg-- ---------- ---------- 5701 -------(uu uacu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgca-gug -gaaa-|cuu -auccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Bat.turfos 5903 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum turfosum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum turfosum. ORGANISM Batrachospermum turfosum. REFERENCE 1 (bases 1 to 2340) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026049 LOCUS AF026049 1765 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum turfosum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026049 NID g2564932 KEYWORDS . SOURCE Batrachospermum turfosum. ORGANISM Batrachospermum turfosum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Batrachospermum turfosum" /db_xref="taxon:67910" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 423 a 383 c 520 g 439 t BASE COUNT 423 a 383 c 520 g 439 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uu- ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uucu)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-ccg ggcugu--g- cg-c-(guaa u--)gcgugc ggcg------ 1801 ---------- ------cggg gcg------- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uuugcu--- ---------- ---------- ---)guugcg ggugu----- ---------- 2221 ----gccggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGA-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----- uaug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcu-guc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- auug-ggg-- ---------- ---------- 5701 -------(uu aauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Bat.virgat 5903 bp RNA RNA 05-NOV-1997 DEFINITION Batrachospermum virgato-decaisneanum.. ACCESSION No information KEYWORDS No information. SOURCE Batrachospermum virgato-decaisneanum. ORGANISM Batrachospermum virgato-decaisneanum. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026050 LOCUS AF026050 1835 bp DNA PLN 05-NOV-1997 DEFINITION Batrachospermum virgato-decaisneanum 18S ribosomal RNA gene, complete sequence. ACCESSION AF026050 NID g2564933 KEYWORDS . SOURCE Batrachospermum virgato-decaisneanum. ORGANISM Batrachospermum virgato-decaisneanum Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Batrachospermum. REFERENCE 1 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1835) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1835 /organism="Batrachospermum virgato-decaisneanum" /db_xref="taxon:67911" primer_bind 1..20 rRNA 1..1835 /product="18S rRNA" primer_bind complement(1808..1835) BASE COUNT 351 a 324 c 396 g 335 t 429 others BASE COUNT 351 a 324 c 396 g 335 t 4497 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uc- ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uucu)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|NNNNNN 1621 N-NNNNNN|N NNNNN--NNN NNNNN-NNN| NNN--NNNNN NNNNNNNNNN |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 nnnnnn-nnn n-nnnn-nnn nnnnnn--n- nn-n-(nnnn n--)nnnnnn nnnn------ 1801 ---------- ------n-n- nnnn-n---- ---------n nnnnnn---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----nnnnn 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------n- nnnnnnn--- nnnnnnnnnn 2161 (nnnnnn--- ---------- ---------- ---)nnnnnn nnnn------ ---------- 2221 ----nnnnnn --------nn nnnn------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --NNNNNNNN NN-NNNN--N 2461 NNNNNNNNNN NN-NN-NN-N NNNNN----- ---------- ---------- ---------- 2521 --------NN NNNN-N-NNN NNNNNN-NNN NNNNNNN|NN -NNNNNN-NN -NNN-----n 2581 nnnn------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- -------nNN 2761 |NNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNN> NNNN|NNNNN NNNNNNNNN| 2821 NNNNNNNNNN NNNNNNNN(N NNNNN)NNNN NNNNNNNNNN NNNNNNNNNN NNNN->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 --NNNNNNNN NN|--NNNNN NNNNNNN-NN -NNNN(NN-N NNN---)NNN N-NNNN-N-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----- caug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcu-gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ccaa cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUC)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- ccgu-ugcg- auug-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-ccg-- 5761 gccgcg-aug -ggaa-|cuu -auccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Bon.hamife 5903 bp RNA RNA 11-JAN-191 DEFINITION Bonnemaisonia hamifera. ACCESSION No information KEYWORDS No information. SOURCE Bonnemaisonia hamifera. ORGANISM Bonnemaisonia hamifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26182 LOCUS BMNFRA 1764 bp ds-DNA PLN 30-JUN-1994 DEFINITION Bonnemaisonia hamifera DNA fragment. ACCESSION L26182 KEYWORDS PCR primer. SOURCE Bonnemaisonia hamifera DNA. ORGANISM Bonnemaisonia hamifera Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Bonnemaisoniales; Bonnemaisoniaceae. REFERENCE 1 (bases 1 to 1764) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507222 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1738..1764 /standard_name="PCR primer" /note="putative" source 1..1764 /organism="Bonnemaisonia hamifera" /sequenced_mol="DNA" BASE COUNT 422 a 378 c 528 g 436 t ORIGIN BASE COUNT 422 a 378 c 528 g 436 t 4139 others ORIGIN 1 |--------- ----CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-acu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucc ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -CAUCCG-G( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GC-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggcg-gcg cggggc--g- uc-c-(ucac ---)ggacgg uucug----- 1801 ---------- ------c-g- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--u agagcgaugu 2161 (uucauu--- ---------- ---------- ---)acauug cacu------ ---------- 2221 ---agucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA GUAAAU-UAG CAUGGAG|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gUUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GCG-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-g-gg cug-(----- uuuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----uggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gguuacc g-------(a uuuc---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agccaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ggc(gaaa-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- caga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 ugucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Bos.califo 5903 bp RNA RNA 16-DEC-1996 DEFINITION Bossiella californica.. ACCESSION No information KEYWORDS No information. SOURCE Bossiella californica. ORGANISM Bossiella californica. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60945 LOCUS BCU60945 1728 bp DNA PLN 16-DEC-1996 DEFINITION Bossiella californica nuclear 18S rRNA gene, partial sequence. ACCESSION U60945 NID g1732167 KEYWORDS . SOURCE Bossiella californica. ORGANISM Bossiella californica Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Bossiella. REFERENCE 1 (bases 1 to 1728) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1728) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1728 /organism="Bossiella californica" /sub_species="schmittii" /strain="Stillwater Cove, Carmel, CA, USA" rRNA <1..>1728 /product="18S rRNA" BASE COUNT 424 a 353 c 458 g 417 t 76 others BASE COUNT 424 a 353 c 458 g 417 t 4251 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uu-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- ---uucuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-auuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc acuu------ 1801 ---------- ------ugca gggg-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- caugcguggg augaggcaac 2161 (uuuauu--- ---------- ---------- ---)gucgaa cguc------ ---------- 2221 ---ccuacgc a-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -nnn|-NNNN 2821 -NN-NNNNNN -NN-NN---- ------NNN- NNN-NNNNNN N--NNNNNNN NN--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 --NNNNNNNN NN|--NNNNN NNNNNNN-N- -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----- aucg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAgggg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- uugc-gaug- gaaa-gagcg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguc-gug -agaa-|cuc -agucgaaac uu-auc-a-u uuag~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Bos.orbign 5903 bp RNA RNA 16-DEC-1996 DEFINITION Bossiella orbigniana.. ACCESSION No information KEYWORDS No information. SOURCE Bossiella orbigniana. ORGANISM Bossiella orbigniana. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60746 LOCUS BOU60746 1702 bp DNA PLN 16-DEC-1996 DEFINITION Bossiella orbigniana nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60746 NID g1732159 KEYWORDS . SOURCE Bossiella orbigniana. ORGANISM Bossiella orbigniana Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Bossiella. REFERENCE 1 (bases 1 to 1702) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1702) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1702 /organism="Bossiella orbigniana" /strain="Laguna Beach, Orange Co., CA, USA" /sub_species="dichotoma" rRNA <1..>1702 /product="18S ribosomal RNA" BASE COUNT 432 a 350 c 471 g 434 t 15 others BASE COUNT 432 a 350 c 471 g 434 t 4216 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~CUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uu-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- ---uucuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-auuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc acuu------ 1801 ---------- ------cgca gggg-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- caugcguggg augaggcaac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 ---ccuacgc a-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GGC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGACG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCCGG-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----- aucg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-UGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAgggg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- uugc-gaug- gaaa-gagcg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguc-gug -agaa-|nuc -agucgaacc uu-auc-a-u uuag-g~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Calli.chei 5903 bp RNA RNA 16-DEC-1996 DEFINITION Calliarthron cheilosporioides.. ACCESSION No information KEYWORDS No information. SOURCE Calliarthron cheilosporioides. ORGANISM Calliarthron cheilosporioides. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60943 LOCUS CCU60943 1699 bp DNA PLN 16-DEC-1996 DEFINITION Calliarthron cheilosporioides nuclear 18S rRNA gene, partial sequence. ACCESSION U60943 NID g1732168 KEYWORDS . SOURCE Calliarthron cheilosporioides. ORGANISM Calliarthron cheilosporioides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Calliarthron. REFERENCE 1 (bases 1 to 1699) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1699) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1699 /organism="Calliarthron cheilosporioides" /strain="Laguna Beach, Orange Co., CA, USA" rRNA <1..>1699 /product="18S rRNA" BASE COUNT 411 a 339 c 451 g 419 t 79 others BASE COUNT 411 a 339 c 451 g 419 t 4283 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uu-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- ---uucuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-auuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc acuu------ 1801 ---------- ------cgca gggg-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- caugcguggg augaggcaac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 ---ucuacgc a-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GGC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGNNNNN NN|--NNNNN NNNNNNN-NN -NNNN(NN-N NNN---)NNN N-NNNN-N-N 3061 NNNNN-NNN- N-NNNNNN-N NNNN(-NAAA )---C|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----- aucg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GN-NN( --NNNN-)NN 3721 NNN-NNNNNU -AAAG--GAA -UGA|AC-GG -AA--GGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAgggg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- uugc-gaug- gaaa-gagcg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguc-gug -a~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Calli.tube 5903 bp RNA RNA 16-DEC-1996 DEFINITION Calliarthron tuberculosum.. ACCESSION No information KEYWORDS No information. SOURCE Calliarthron tuberculosum. ORGANISM Calliarthron tuberculosum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60944 LOCUS CTU60944 1687 bp DNA PLN 16-DEC-1996 DEFINITION Calliarthron tuberculosum nuclear 18S rRNA gene, partial sequence. ACCESSION U60944 NID g1732170 KEYWORDS . SOURCE Calliarthron tuberculosum. ORGANISM Calliarthron tuberculosum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Calliarthron. REFERENCE 1 (bases 1 to 1687) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1687) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1687 /organism="Calliarthron tuberculosum" /strain="Bamfield, Vancouver Is., B.C., Canada" rRNA <1..>1687 /product="18S rRNA" BASE COUNT 425 a 353 c 470 g 432 t 7 others BASE COUNT 425 a 353 c 470 g 432 t 4223 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~CU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uu-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- ---uucuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-auuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc acuu------ 1801 ---------- ------cgca gggg-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- caugcguggg augaggcaac 2161 (uuuauu--- ---------- ---------- ---)gucgaa cguc------ ---------- 2221 ---ucuacgc a-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GGC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCCGG-NNN- N-NAAACU-G CUGC(-GAAA )--G-|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----- aucg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAgggg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- uugc-gaug- gaaa-gagcg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguc-gug -agaa-|cun -agucgaacc uu-auc-a-u una~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Callo.rang 5903 bp RNA RNA 26-JUL-1996 DEFINITION Callophyllis rangiferina.. ACCESSION No information KEYWORDS No information. SOURCE Callophyllis rangiferina. ORGANISM Callophyllis rangiferina. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33123 LOCUS CRU33123 1773 bp DNA PLN 26-JUL-1996 DEFINITION Callophyllis rangiferina 18S ribosomal RNA gene, complete sequence. ACCESSION U33123 NID g1463104 KEYWORDS . SOURCE Callophyllis rangiferina. ORGANISM Callophyllis rangiferina Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Kallymeniaceae; Callophyllis. REFERENCE 1 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1773 /organism="Callophyllis rangiferina" /note="isolate G0078" rRNA 1..1773 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1746..1773) /note="3' PCR primer" BASE COUNT 422 a 378 c 525 g 448 t BASE COUNT 422 a 378 c 525 g 448 t 4130 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUCGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-GA GU|------- |-------(- ---)[----- 121 ---------- --------au gagucg-acg ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaaugac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-A( ---auu--)U 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCCA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaguuu-ggc g-ggca-guc uggggc--g- uc-c-(ucac ---)ggacgg guuca----- 1801 ---------- ------g-g- cugg-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccagcggagc 2161 (uucauu--- ---------- ---------- ---)gcgucg cugu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACCU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uucc|-uUUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg gac-a-g-ga cu--(---gu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gu-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAggug c--cgcuacc --------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------aac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaaa-) gcgcc----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- ggga-cugug ---------- ---------- 5701 -------(au uu----)--- ---------- ---------- ---------- cacg-gac-- 5761 ccuuug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Cam.oxycla 5903 bp RNA RNA 10-AUG-1998 DEFINITION Camontagnea oxyclada.. ACCESSION No information KEYWORDS No information. SOURCE Camontagnea oxyclada. ORGANISM Camontagnea oxyclada. REFERENCE 1 (bases 1 to 2340) AUTHORS Harper,J.T. and Saunders,G.W. TITLE nuclear small-subunit ribosomal DNA sequence data A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on JOURNAL Eur. J. Phycol. 33 (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF079794 LOCUS AF079794 1771 bp DNA PLN 10-AUG-1998 DEFINITION Camontagnea oxyclada small subunit ribosomal RNA gene, complete sequence. ACCESSION AF079794 NID g3406790 KEYWORDS . SOURCE Camontagnea oxyclada. ORGANISM Camontagnea oxyclada Eukaryota; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Camontagnea. REFERENCE 1 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE A molecular systematic investigation of the Acrochaetiales (Florideophycidae, Rhodophyta) and related taxa based on nuclear small-subunit ribosomal DNA sequence data JOURNAL Eur. J. Phycol. 33 (1998) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Harper,J.T. and Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (23-JUL-1998) Biology, University of New Brunswick, 10 Bailey Drive, Fredericton, NB E3B 5A3, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Camontagnea oxyclada" /db_xref="taxon:79947" primer_bind 1..20 /note="G01" rRNA 21..1743 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="G07 complement" BASE COUNT 433 a 379 c 512 g 447 t BASE COUNT 433 a 379 c 512 g 447 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--a- cg-u-(guag u--)gcgugc ggcg------ 1801 ---------- ------cug- gggc-g---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- ucguuguggc 2161 (uuuacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUAUAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------CAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAggag c--cgcuac- --------(c guug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcugu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---ucgcuu- cU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua cgc(gaga-) gcguu----u ccgaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-cgcg- guug-aggcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcc-cug-- 5761 gccaua-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Cap.implex 5903 bp RNA RNA 21-SEP-1998 DEFINITION Capreolia implexa.. ACCESSION No information KEYWORDS No information. SOURCE Capreolia implexa. ORGANISM Capreolia implexa. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60344 LOCUS CIU60344 1705 bp DNA PLN 21-SEP-1998 DEFINITION Capreolia implexa 18S ribosomal RNA gene, partial sequence. ACCESSION U60344 NID g1732124 KEYWORDS . SOURCE Capreolia implexa. ORGANISM Capreolia implexa Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Capreolia. REFERENCE 1 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1705 /organism="Capreolia implexa" /strain="Port Phillip Bay, Victoria, Australia" /db_xref="taxon:28865" rRNA <1..>1705 /product="18S ribosomal RNA" BASE COUNT 390 a 344 c 457 g 404 t 110 others BASE COUNT 390 a 344 c 457 g 404 t 4308 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----NN-N N-NNN-NNNN N---->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uaac ---)agacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuaguggugc 2161 (uuuauu--- ---------- ---------- ---)gccucg cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-g-cg cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uunnnn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguaa--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Car.phyllo 5903 bp RNA RNA 26-JUL-1996 DEFINITION Carpopeltis phyllophora.. ACCESSION No information KEYWORDS No information. SOURCE Carpopeltis phyllophora. ORGANISM Carpopeltis phyllophora. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33124 LOCUS CPU33124 1770 bp DNA PLN 26-JUL-1996 DEFINITION Carpopeltis phyllophora 18S ribosomal RNA gene, complete sequence. ACCESSION U33124 NID g1463103 KEYWORDS . SOURCE Carpopeltis phyllophora. ORGANISM Carpopeltis phyllophora Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Carpopeltis. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Carpopeltis phyllophora" /note="isolate G0069" rRNA 1..1770 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 435 a 371 c 514 g 450 t BASE COUNT 435 a 371 c 514 g 450 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- -----uaaac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaauuu-ggc g-ggcg-acu ugaguc--g- uc-u-(uuac ---)cgacga ucuua----- 1801 ---------- ------g-g- uugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cugguggugc 2161 (uuaauc--- ---------- ---------- ---)gcuucg -cua------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuuc|-uaUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg ggc-g-g-gg cu--(---gu -uuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uagc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- uagu-cggug ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- caca-gau-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Cep.furcel 5903 bp RNA RNA 11-JAN-191 DEFINITION Cephalocystis furcellata. ACCESSION No information KEYWORDS No information. SOURCE Cephalocystis furcellata. ORGANISM Cephalocystis furcellata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23949 LOCUS CFU23949 1770 bp rRNA PLN 24-DEC-1995 DEFINITION Cephalocystis furcellata small subunit ribosomal RNA gene. ACCESSION U23949 NID g1134902 KEYWORDS . SOURCE Cephalocystis furcellata. ORGANISM Cephalocystis furcellata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Cephalocystis. REFERENCE 1 (bases 1 to 1770) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134902 FEATURES Location/Qualifiers source 1..1770 /organism="Cephalocystis furcellata" /isolate="Voucher G0133" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1770 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 438 a 369 c 510 g 453 t ORIGIN BASE COUNT 438 a 369 c 510 g 453 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- -----uauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUUUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---acg--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggu g-ggcg-acu ugccag--g- uc-c-(ucgc ---)ggacgu uggca----- 1801 ---------- ------g-g- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggu--- cuagugguuc 2161 (uuuacu--- ---------- ---------- ---)gcaucg -cua------ ---------- 2221 ---gaucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggc-g-g-gg cu--(---gu cauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--gauuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uagC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaaa- cgua-gugug ---------- ---------- 5701 -------(uu uc----)--- ---------- ---------- ---------- caca-ugu-- 5761 cauuug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Cep.leucob 5903 bp RNA RNA 11-JAN-191 DEFINITION Cephalocystis leucobotrys. ACCESSION No information KEYWORDS No information. SOURCE Cephalocystis leucobotrys. ORGANISM Cephalocystis leucobotrys. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23950 LOCUS CSU23950 1770 bp rRNA PLN 24-DEC-1995 DEFINITION Cephalocystis luecobotrys small subunit ribosomal RNA gene. ACCESSION U23950 NID g1134903 KEYWORDS . SOURCE Cephalocystis leucobotrys. ORGANISM Cephalocystis leucobotrys Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Cephalocystis. REFERENCE 1 (bases 1 to 1770) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134903 FEATURES Location/Qualifiers source 1..1770 /organism="Cephalocystis leucobotrys" /isolate="Voucher G0195" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1770 /product="small subunit ribosomal RNA" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 439 a 370 c 509 g 452 t ORIGIN BASE COUNT 439 a 370 c 509 g 452 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- -----uauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUUUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---acg--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gaa)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggu g-ggcg-acu ugccac--g- uc-c-(ucgc ---)ggacgu uggca----- 1801 ---------- ------g-g- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggu--- cuagugguuc 2161 (uuuacu--- ---------- ---------- ---)gcaucg -cua------ ---------- 2221 ---gaucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggc-g-g-gg cu--(---gu cauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--gauuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uagC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaaa- cgua-gugug ---------- ---------- 5701 -------(uu uc----)--- ---------- ---------- ---------- caca-ugu-- 5761 cauuug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Cer.macile 5903 bp RNA RNA 11-JAN-191 DEFINITION Ceramium macilentum. ACCESSION No information KEYWORDS No information. SOURCE Ceramium macilentum. ORGANISM Ceramium macilentum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U32562 LOCUS CMU32562 1772 bp DNA PLN 17-AUG-1995 DEFINITION Ceramium macilentum small-subunit ribosomal RNA, partial sequence. ACCESSION U32562 KEYWORDS . SOURCE Ceramium macilentum. ORGANISM Ceramium macilentum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Ceramiaceae; Ceramium. REFERENCE 1 (bases 1 to 1772) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1772) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945169 FEATURES Location/Qualifiers source 1..1772 /organism="Ceramium macilentum" /isolate="G0285" primer_bind 1..20 /note="5' PCR primer" rRNA <1..>1772 /product="small-subunit ribosomal RNA" primer_bind complement(1745..1772) /note="3' PCR primer" BASE COUNT 436 a 375 c 510 g 451 t ORIGIN BASE COUNT 436 a 375 c 510 g 451 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- ---uaacuac 301 u>ACUCGG-A UACCCGUAG( -U-AAAA)UU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACACGG -UAAA--CAU C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacguu-ggc g-ggcg-ucg caaguc--g- gc-c-(gaaa ---)ggucgu ucuug----- 1801 ---------- ------a-g- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuugcgaugc 2161 (uucauu--- ---------- ---------- ---)gucauc gugg------ ---------- 2221 ---agucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- UAU-CAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACC-AU AAACUAUGAG AAC|UG|--- 3421 --aguuu-gg gac-g-u-gg cu--(----a uuu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggu-a c-gu-ucc-g ca-cucu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(cugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACUUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uauuacc --------(a uuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcaaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------agC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(guaa-) guguu----u ccuaau-cuc --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAACUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUUAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uggu- cgga-cugu- ---------- ---------- 5701 -------(gu uu----)--- ---------- ---------- ---------- caca-gacc- 5761 ggcgug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Cer.rubrum 5903 bp RNA RNA 11-JAN-191 DEFINITION Ceramium rubrum. ACCESSION No information KEYWORDS No information. SOURCE Ceramium rubrum. ORGANISM Ceramium rubrum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26183 LOCUS CMQFRA 1778 bp ds-DNA PLN 30-JUN-1994 DEFINITION Ceramium rubrum DNA fragment. ACCESSION L26183 KEYWORDS PCR amplified. SOURCE Ceramium rubrum DNA. ORGANISM Ceramium rubrum Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Ceramiales; Ceramiaceae. REFERENCE 1 (bases 1 to 1778) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507225 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1752..1778 /standard_name="PCR primer" /note="putative" source 1..1778 /organism="Ceramium rubrum" /sequenced_mol="DNA" BASE COUNT 429 a 377 c 513 g 459 t BASE COUNT 429 a 377 c 513 g 459 t 4125 others ORIGIN 1 |~~~~~~~~~ ~~~~CACCCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaacuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAAA UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACACGG -UAAA--CAU C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacguu-ggc g-ggcg-ccu cgaguc--g- gc-c-(ucac ---)ggucga ucuug----- 1801 ---------- ------uug- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc-uu aggucggugc 2161 (uuuauu--- ---------- ---------- ---)gucacu ccuu------ ---------- 2221 ---ugucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- UAU-CAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACC-AU AAACUAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-u-gg cu--(----- auuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggu-a c-gc-ucg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUA-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACUUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uguuacc --------(a uuuc-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcga--g-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcggC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUAGAGGCU( UGCAACUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gguc-ugca- uguc-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cac--uug-- 5761 ugugca-ggu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Cha.affini 5903 bp RNA RNA 11-JAN-191 DEFINITION Champia affinis. ACCESSION No information KEYWORDS No information. SOURCE Champia affinis. ORGANISM Champia affinis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23951 LOCUS CAU23951 1773 bp rRNA PLN 24-DEC-1995 DEFINITION Champia affinis small subunit ribosomal RNA gene. ACCESSION U23951 NID g1134900 KEYWORDS . SOURCE Champia affinis. ORGANISM Champia affinis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Champiaceae; Champia. REFERENCE 1 (bases 1 to 1773) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134900 FEATURES Location/Qualifiers source 1..1773 /organism="Champia affinis" /isolate="Voucher G0106" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1773 /product="small subunit ribosomal RNA" primer_bind complement(1746..1773) /note="3' PCR primer" BASE COUNT 457 a 359 c 491 g 466 t ORIGIN BASE COUNT 457 a 359 c 491 g 466 t 4130 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- -----uauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-gaug-aug agcaac--g- uc-u-(ucau ---)ugacgg uaguu----- 1801 ---------- ------uua- ucaa-a---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggguggu--- cuacugguuc 2161 (uuuacu--- ---------- ---------- ---)gaaucg -aua------ ---------- 2221 ---gaucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACUAUGAG GAC|UG|--- 3421 --gagau-cg ggu-g-g-ga au--(--acc uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--uaguacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu acuaaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -A-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug uac(gaaa-) guauu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggac-uagg- ugga-uugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 ugccca-guc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Che.sagitt 5903 bp RNA RNA 16-DEC-1996 DEFINITION Cheilosporum sagittatum.. ACCESSION No information KEYWORDS No information. SOURCE Cheilosporum sagittatum. ORGANISM Cheilosporum sagittatum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60745 LOCUS CSU60745 1707 bp DNA PLN 16-DEC-1996 DEFINITION Cheilosporum sagittatum nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60745 NID g1732161 KEYWORDS . SOURCE Cheilosporum sagittatum. ORGANISM Cheilosporum sagittatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Cheilosporum. REFERENCE 1 (bases 1 to 1707) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1707) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1707 /organism="Cheilosporum sagittatum" /strain="Pt. Lonsdale, Victoria, Australia" rRNA <1..>1707 /product="18S ribosomal RNA" BASE COUNT 423 a 348 c 454 g 429 t 53 others BASE COUNT 423 a 348 c 454 g 429 t 4249 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~GA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uc-a-acac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- ----uuuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaccguuc -ga|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAUUU-ACCC -AAUUCU-G( ---acu--)C 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg a-auuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc acuu------ 1801 ---------- ------ugcg ggga-u---- ---------u ucuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- caugcguggg augaggcaac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 ---ccuacgc a-------ac cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgn------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -nnn|-NNNN 2821 -NN-NNNNNN -NN-NN---- ------NNN- NNN-NNNNNN N--NNNNNNN NN--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 ---NNGGGCA UU|--UGUAU U-CGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCUGA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uauuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacg-u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaga-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-ucgga- uugc-gaua- gaaa-ga-cg ---------- ---------- 5701 -------(uu uc----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguu-gug -agaa-|nuc -agucgaacc uu-auc-a-u uu~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cho.crispu 5903 bp RNA RNA 11-JAN-191 DEFINITION Chondrus crispus. ACCESSION No information KEYWORDS No information. SOURCE Chondrus crispus. ORGANISM Chondrus crispus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14140 ID CC18SRRNG standard; DNA; PLN; 1778 BP. XX AC Z14140; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE C.crispus gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Chondrus crispus OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Gigartinales; Gigartinaceae. XX RN [1] RP 1-1778 RA Bird C.J., Murphy C.A., Rice E.L., Ragan M.A.; RT "The 18S rRNA gene sequences of four commercially important RT seaweeds"; RL Unpublished. XX RN [2] RP 1-1778 RA Ragan M.A.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL Ragan M. A., NRC Institute for Marine Biosciences, 1411 Oxford St, RL Halifax, Nova Scotia, Canada, B3H 3Z1 XX CC *source: is_macronuclear=N; CC *source: is_proviral=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1778 FT /product="18S ribosomal RNA" FT misc_feature 1..22 FT /note= "PCR_primer" FT misc_feature 1752..1778 FT /note= "PRC_primer" /citation= ([1]) XX SQ Sequence 1778 BP; 437 A; 369 C; 521 G; 451 T; 0 other; BASE COUNT 437 a 369 c 521 g 451 t 4125 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacuac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAAG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GAGU-G A-CGGA|UCG -U-(GGGU-) 1201 GCG-AGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aua--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggca-guc cagggc--g- uc-c-(ucgc ---)ggacgg aucug----- 1801 ---------- ------g-a- guuggc---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- cuaguggagc 2161 (uucacu--- ---------- ---------- ---)gcuuca uugu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggg-a-g-ga cu--(---gu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-ac-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--caguacc g-------(u uuuu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu acugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAACUU)U CCCUCUUG-A 5521 ACGAGG-AAC A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-ugga- ugga-uugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-aac-- 5761 uaucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGACAG--- 5881 --AAUU~~~~ ~~~~~~~~|| ||| // LOCUS Cla.compac 5903 bp RNA RNA 16-DEC-1996 DEFINITION Clathromorphum compactum.. ACCESSION No information KEYWORDS No information. SOURCE Clathromorphum compactum. ORGANISM Clathromorphum compactum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60742 LOCUS CCU60742 1690 bp DNA PLN 16-DEC-1996 DEFINITION Clathromorphum compactum nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60742 NID g1732160 KEYWORDS . SOURCE Clathromorphum compactum. ORGANISM Clathromorphum compactum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Clathromorphum. REFERENCE 1 (bases 1 to 1690) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1690) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1690 /organism="Clathromorphum compactum" /strain="Newfoundland, Canada" rRNA <1..>1690 /product="18S ribosomal RNA" BASE COUNT 411 a 344 c 461 g 418 t 56 others BASE COUNT 411 a 344 c 461 g 418 t 4269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- --uaacuuac 301 u>AUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCG-G( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uac)GG CU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu a-guuc-cgg gagcgu--g- cg-c-(gucg u--)gcgcgu ncuu------ 1801 ---------- ------cgca gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gaugcgucgg augaggcgac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 ---cguacgc u-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUUAAAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUACAU-UAG CAUGGAA|UA -ANNNNN-nn -nnn-----n 2581 nnnn------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -nnn|-nnnn 2821 -nn-nnnnnn -nn-nn---- ------nnn- nnn-nnnnnn n---nnnnnn na--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUCAGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCUGA-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 A--CUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----acCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uugc-agng- gaaa-gggcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucug~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cla.parcum 5903 bp RNA RNA 16-DEC-1996 DEFINITION Clathromorphum parcum.. ACCESSION No information KEYWORDS No information. SOURCE Clathromorphum parcum. ORGANISM Clathromorphum parcum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61252 LOCUS CPU61252 1719 bp DNA PLN 16-DEC-1996 DEFINITION Clathromorphum parcum nuclear 18S rRNA gene, partial sequence. ACCESSION U61252 NID g1732174 KEYWORDS . SOURCE Clathromorphum parcum. ORGANISM Clathromorphum parcum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Clathromorphum. REFERENCE 1 (bases 1 to 1719) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1719) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1719 /organism="Clathromorphum parcum" /strain="Horseshoe Cove, Sonoma Co., CA, USA" rRNA <1..>1719 /product="18S rRNA" BASE COUNT 418 a 349 c 465 g 434 t 53 others BASE COUNT 418 a 349 c 465 g 434 t 4237 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ua-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaacuuuc 301 u>ACACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCG-G( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-guuc-cgg gggcgu--g- cg-c-(gucg u--)gcgcgu gcuu------ 1801 ---------- ------cgca gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- caugcguugg augaagcguc 2161 (uuuauu--- ---------- ---------- ---)gaugaa cguc------ ---------- 2221 ---cuuacgc u-------ac cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUACAU-UAG CAUGGAA|UA -AUUGAA-UA -GGA-----c 2581 uug------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gucu--UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-UGAGUA A--UGAUUGA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUCAGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCUGA-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNNN-- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uauuacu g-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguagga--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cacUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGG----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cgc(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CUCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uugc-accg- ggaa-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-ugu-- 5761 ucugcc-ccg -agaa-|cuc -agucgaacc uu-auc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cora.elong 5903 bp RNA RNA 16-DEC-1996 DEFINITION Corallina elongata.. ACCESSION No information KEYWORDS No information. SOURCE Corallina elongata. ORGANISM Corallina elongata. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60946 LOCUS CEU60946 1729 bp DNA PLN 16-DEC-1996 DEFINITION Corallina elongata nuclear 18S rRNA gene, partial sequence. ACCESSION U60946 NID g1732169 KEYWORDS . SOURCE Corallina elongata. ORGANISM Corallina elongata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Corallina. REFERENCE 1 (bases 1 to 1729) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1729) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1729 /organism="Corallina elongata" /strain="Swakopmund, Namibia, South Africa" rRNA <1..>1729 /product="18S rRNA" BASE COUNT 429 a 353 c 479 g 442 t 26 others BASE COUNT 429 a 353 c 479 g 442 t 4200 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uu-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- ---uuuuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GCAC(---- ----cua)GU GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-auuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc acuu------ 1801 ---------- ------ugca gggg-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- uaugcguggg augaggcgac 2161 (uuuauu--- ---------- ---------- ---)gucgaa cguc------ ---------- 2221 ---ccuacgc a-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUAUAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GGC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCAGGC--NN -NNNN(NN-N NNN---)NNN N-NNNN-N-N 3061 NNNGG-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----a ucgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uugc-gaug- gaaa-gagcg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguc-gug -agaa-|nuc -agucgaacc uu-auc-a-u uuag-AG~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cora.offic 5903 bp RNA RNA 11-JAN-191 DEFINITION Corallina officinalis. ACCESSION No information KEYWORDS No information. SOURCE Corallina officinalis. ORGANISM Corallina officinalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26184 LOCUS CNWFRA 1786 bp ds-DNA PLN 30-JUN-1994 DEFINITION Corallina officinalis DNA fragment. ACCESSION L26184 KEYWORDS PCR amplified. SOURCE Corallina officinalis DNA. ORGANISM Corallina officinalis Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Corallinales; Corallinaceae. REFERENCE 1 (bases 1 to 1786) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507226 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1760..1786 /standard_name="PCR primer" /note="putative" source 1..1786 /organism="Corallina officinalis" /sequenced_mol="DNA" BASE COUNT 458 a 370 c 501 g 457 t BASE COUNT 458 a 370 c 501 g 457 t 4117 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uu-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- ---uuuuuac 301 u>ACUCGG-A UAAUCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----aua)AA GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-auuc-cgg augugu--g- cg-c-(guc- ---)gugcgc gcacuu---- 1801 ---------- ------ugca gggg-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- caugcguggg augaugcgac 2161 (uuuauu--- ---------- ---------- ---)gucgaa cguc------ ---------- 2221 ---ccuacgc a-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GGC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCAGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCUGG-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----a ucgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uugc-gaug- gaaa-gagcg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguc-gug -agaa-|cuc -agucgaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Cord.erect 5903 bp RNA RNA 11-JAN-191 DEFINITION Cordylecladia erecta. ACCESSION No information KEYWORDS No information. SOURCE Cordylecladia erecta. ORGANISM Cordylecladia erecta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23952 LOCUS CEU23952 1771 bp rRNA PLN 24-DEC-1995 DEFINITION Cordylecladia erecta small subunit ribosomal RNA gene. ACCESSION U23952 NID g1134901 KEYWORDS . SOURCE Cordylecladia erecta. ORGANISM Cordylecladia erecta Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Cordylecladia. REFERENCE 1 (bases 1 to 1771) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134901 FEATURES Location/Qualifiers source 1..1771 /organism="Cordylecladia erecta" /isolate="Voucher G0206" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1771 /product="small subunit ribosomal RNA" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 436 a 372 c 510 g 453 t ORIGIN BASE COUNT 436 a 372 c 510 g 453 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- -----uauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acu ugccuc--g- uc-c-(uugc ---)ggaugu uggca----- 1801 ---------- ------g-g- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuagugguuc 2161 (uuuacu--- ---------- ---------- ---)gcaucg cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggc-g-g-gg cu--(---gu cauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaaa- ugga-cugug ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cacg-gac-- 5761 cguuug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Cro.attenu 5903 bp RNA RNA 11-JAN-191 DEFINITION Crouania attenuata. ACCESSION No information KEYWORDS No information. SOURCE Crouania attenuata. ORGANISM Crouania attenuata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U32563 LOCUS CAU32563 1774 bp DNA PLN 17-AUG-1995 DEFINITION Crouania attenuata small-subunit ribosomal RNA, partial sequence. ACCESSION U32563 KEYWORDS . SOURCE Crouania attenuata. ORGANISM Crouania attenuata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Ceramiaceae; Crouania. REFERENCE 1 (bases 1 to 1774) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1774) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945168 FEATURES Location/Qualifiers source 1..1774 /organism="Crouania attenuata" /isolate="G0284" primer_bind 1..20 /note="5' PCR primer" rRNA <1..>1774 /product="small-subunit ribosomal RNA" primer_bind complement(1747..1774) /note="3' PCR primer" BASE COUNT 443 a 375 c 505 g 451 t ORIGIN BASE COUNT 443 a 375 c 505 g 451 t 4129 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac gagug--uac ---------- -au-a-uaac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aguu-- ----ucuucg 241 gcgg<----- ---------- ---------- ---------- ---------- ----uaauac 301 u>ACUCGGAA UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- --<-----a- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- -uucgca-ug gggc(----- ---------u uuuu------ 601 ---------- ---------- ---)g-uucc ugc---|GCA CUACGUAGAU AGAUA-CAA- 661 accaa----- ---------- --------(- ---------- ---------- ---------- 721 ------uuuc u)-------- ---------- ---------- ------uugg UG--AUUCAU 781 A-CUUAUUG- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|UUG-AUCG -C--acag(- ----uuu--- ---------- -------)uu gu--G-CGAC 1081 ---------> -acgccgauc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGGGG- -GCCC(---- ----aau)GG GC-UU-CCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggc g-ggcg-gug cgaggc--a- uc-c-(uuac ---)ggauga gcuug----- 1801 ---------- ------u-g- cugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- cugguggugc 2161 (uuuacu--- ---------- ---------- ---)gccucg ccgg------ ---------- 2221 ----gucacc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAAGGUGU UC-AA-AG-C GGGCU----- ---------- ---------- ---------- 2521 --------UG UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UUUU 2821 -UU-AUUGGU -UU-GU---- ------AAG- UAU-CAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--UGUAU UUCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGA-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACC-AU AAACGAUGAU GAC|UA|--- 3421 --gagau-cg gcc-g-u-gg cc--(---ua uuu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggu-a c-gg-ucg-g ca-ucuu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu gAUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uugu-gagga uu-----guc aga(uugaga g-c)------ ucuua----- cuu-gauu-c 4141 aauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cauuacc --------(u uuuu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu aaugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------gGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-U-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUCGAGGGU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggaa-caga- aaac-uugc- ---------- ---------- 5701 -------(gu au----)--- ---------- ---------- ---------- -gca-agc-- 5761 uuugug-guc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Cry.undula 5903 bp RNA RNA 26-JUL-1996 DEFINITION Cryptonemia undulata.. ACCESSION No information KEYWORDS No information. SOURCE Cryptonemia undulata. ORGANISM Cryptonemia undulata. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33125 LOCUS CUU33125 1769 bp DNA PLN 26-JUL-1996 DEFINITION Cryptonemia undulata 18S ribosomal RNA gene, complete sequence. ACCESSION U33125 NID g1463105 KEYWORDS . SOURCE Cryptonemia undulata. ORGANISM Cryptonemia undulata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Cryptonemia. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1769 /organism="Cryptonemia undulata" /note="isolate G0081" rRNA 1..1769 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 436 a 373 c 511 g 449 t BASE COUNT 436 a 373 c 511 g 449 t 4134 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- -----uaaac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----agu)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaauuu-ggc g-ggcg-auu uaaguc--g- uc-u-(uuac ---)cgacga ucuua----- 1801 ---------- ------g-a- uugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuaguggugc 2161 (uuaacc--- ---------- ---------- ---)gcuucg cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uucc|-uaUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg ggc-g-g-gg cu--(---gu -uuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuaGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- uagu-cggug ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- caca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Cur.flabel 5903 bp RNA RNA 31-JAN-1994 DEFINITION Curdiea flabellata. ACCESSION No information KEYWORDS No information. SOURCE Curdiea flabellata. ORGANISM Curdiea flabellata. REFERENCE 1 (bases 1 to 2340) AUTHORS Mark Ragan JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26207 LOCUS CDXFRA 1769 bp DNA PLN 31-JAN-1994 DEFINITION Curdiea flabellata DNA fragment. ACCESSION L26207 NID g431015 KEYWORDS PCR amplified. SOURCE Curdiea flabellata DNA. ORGANISM Curdiea flabellata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Curdiea. REFERENCE 1 (bases 1 to 1769) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1769 /organism="Curdiea flabellata" /db_xref="taxon:31476" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1743..1769 /standard_name="PCR primer" /note="putative" BASE COUNT 452 a 367 c 504 g 446 t BASE COUNT 452 a 367 c 504 g 446 t 4134 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-uaac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUGG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-uucg-acu ugaguc--g- uc-c-(gcga ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagu--- cugguggugc 2161 (uuaauu--- ---------- ---------- ---)ggaucg ccag------ ---------- 2221 ----gcugcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGGA|UA -AUGGAA-UA -GGA-----c 2581 ccga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGA-AGG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg gau-g-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC|agg-aca 4081 uagu-aagga uc-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GA|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg g--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcga-ac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ucaa cgggugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uagu- ugaa-cug-- ---------- ---------- 5701 -------(uu uguc--)--- ---------- ---------- ---------- --ca-gau-- 5761 cgucug-gcu -ccaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Dasya.bail 5903 bp RNA RNA 11-JAN-191 DEFINITION Dasya baillouviana. ACCESSION No information KEYWORDS No information. SOURCE Dasya baillouviana. ORGANISM Dasya baillouviana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26185 LOCUS DSYFRA 1770 bp ds-DNA PLN 30-JUN-1994 DEFINITION Dasya baillouviana DNA fragment. ACCESSION L26185 KEYWORDS PCR amplified. SOURCE Dasya baillouviana DNA. ORGANISM Dasya baillouviana Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Ceramiales; Dasyaceae. REFERENCE 1 (bases 1 to 1770) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507237 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" source 1..1770 /organism="Dasya baillouviana" /sequenced_mol="DNA" BASE COUNT 454 a 370 c 502 g 444 t BASE COUNT 454 a 370 c 502 g 444 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGC-CG GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-aac ---------- -ga-a-uaac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gggg<----- ---------- ---------- ---------- ---------- ----uaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gccccguuc -aa|auuucu ga|--CCU-A UCA--ACUAU --GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGGGG- -GCCC(---- ----gau)GG GC-UC-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAACG -UAAA--CAA C-----UU-A U-CGA-GGAA C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-ggag-acg caggcc--g- uc-c-(gcga ---)ggacga acuug----- 1801 ---------- ------c-g- ucug-a---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uugguggugc 2161 (uuuacu--- ---------- ---------- ---)gcauug cuga------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAGCA----- ---------- ---------- ---------- 2521 -------aUU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ucUU|-GUUU 2821 -CU-AUUGGU -UU-GU---- ------AAA- GUU-CAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg gac-g-u-gg ca--(----a uaau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggu-a c-gu-ucg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uaau-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gguu-u 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc g-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----caGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCA-G -G-C(----- 5041 --GUCUA-)G UCUG-U-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ucag cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ag uac(gaga-) guacg----a cccaau-cuc --gaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUUGAGGCU( UGCAAUUU)U CCCUCCUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUUAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-aaaa- ugga-cugu- ---------- ---------- 5701 -------(uu uc----)--- ---------- ---------- ---------- -aca-gac-- 5761 uguuug-gcu -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Dasyp.insi 5903 bp RNA RNA 11-JAN-191 DEFINITION Dasyphloea insignis. ACCESSION No information KEYWORDS No information. SOURCE Dasyphloea insignis. ORGANISM Dasyphloea insignis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09614 LOCUS DIU09614 1773 bp DNA PLN 07-DEC-1994 DEFINITION Dasyphloea insignis small-subunit rRNA gene. ACCESSION U09614 KEYWORDS ribosomal RNA small subunit. SOURCE Dasyphloea insignis. ORGANISM Dasyphloea insignis Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Dumontiaceae; Dasyphloea. REFERENCE 1 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595306 FEATURES Location/Qualifiers source 1..1773 /organism="Dasyphloea insignis" /isolate="VOUCHER GWS-G0034" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1773 /product="small-subunit rRNA" primer_bind complement(1746..1773) /note="PCR 3' end primer" BASE COUNT 426 a 374 c 530 g 443 t ORIGIN BASE COUNT 426 a 374 c 530 g 443 t 4130 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacgac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaguuu-ggu g-ggcg-acc uggggc--g- uc-u-(ucac ---)ggacga guca------ 1801 ---------- ------g-g- uugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccgacggggc 2161 (uuuauu--- ---------- ---------- ---)gcgucg ucgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACCU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uucc|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAG-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg gac-a-g-ga cu--(---gu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gu-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cacuacu --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugcug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- uaga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 ugucug-gcc -ccaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Dev.rament 5903 bp RNA RNA 11-JAN-191 DEFINITION Devaleraea ramentacea subsp. Devaleraea ramentacea. ACCESSION No information KEYWORDS No information. SOURCE Devaleraea ramentacea subsp. Devaleraea ramentacea. ORGANISM Devaleraea ramentacea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26186 LOCUS DEVFRA 1771 bp ds-DNA PLN 30-JUN-1994 DEFINITION Devaleraea ramentacea DNA fragment. ACCESSION L26186 KEYWORDS PCR amplified. SOURCE Devaleraea ramentacea DNA. ORGANISM Devaleraea ramentacea Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Palmariales; Palmariaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507229 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1771 /note="putative" source 1..1771 /organism="Devaleraea ramentacea" /sequenced_mol="DNA" BASE COUNT 430 a 387 c 515 g 439 t BASE COUNT 430 a 387 c 515 g 439 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)CC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-c-(guaa u--)gcgugc ggcg------ 1801 ---------- ------c-u- ggggcg---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcguuguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGACuUGGU 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGC|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---AUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-a-g-gc au--(---ua cgau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcuguuc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gcCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua cac(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggac- ugcc-g-cg- guug-aggcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcc-cug-- 5761 gccgca-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAAU~~~~ ~~~~~~~~|| ||| // LOCUS Dil.carnos 5903 bp RNA RNA 26-JUL-1996 DEFINITION Dilsea carnosa.. ACCESSION No information KEYWORDS No information. SOURCE Dilsea carnosa. ORGANISM Dilsea carnosa. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33126 LOCUS DCU33126 1778 bp DNA PLN 26-JUL-1996 DEFINITION Dilsea carnosa 18S ribosomal RNA gene, complete sequence. ACCESSION U33126 NID g1463106 KEYWORDS . SOURCE Dilsea carnosa. ORGANISM Dilsea carnosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Dumontiaceae; Dilsea. REFERENCE 1 (bases 1 to 1778) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1778) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1778 /organism="Dilsea carnosa" /note="isolate G0159" rRNA 1..1778 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1751..1778) /note="3' PCR primer" BASE COUNT 420 a 372 c 532 g 454 t BASE COUNT 420 a 372 c 532 g 454 t 4125 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacgac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCCA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaguuu-ggc g-ggcg-gcu cggggc--g- uc-u-(ucac ---)ggacga uuucg----- 1801 ---------- ------g-g- cugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccagcggggc 2161 (uuuauu--- ---------- ---------- ---)gcguuc gcugu----- ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 ------UUUU UGCC-A-UGA AUACCU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuuc|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-UGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg gac-a-g-ga cu--(---gu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gu-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cacuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----cuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-ugga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 cgucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS End.murica 5903 bp RNA RNA 26-JUL-1996 DEFINITION Endocladia muricata.. ACCESSION No information KEYWORDS No information. SOURCE Endocladia muricata. ORGANISM Endocladia muricata. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33127 LOCUS EMU33127 1771 bp DNA PLN 26-JUL-1996 DEFINITION Endocladia muricata 18S ribosomal RNA gene, complete sequence. ACCESSION U33127 NID g1463107 KEYWORDS . SOURCE Endocladia muricata. ORGANISM Endocladia muricata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Endocladia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Endocladia muricata" /note="isolate G0155" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 425 a 372 c 529 g 445 t BASE COUNT 425 a 372 c 529 g 445 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaaugac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggu g-ggcg-acc uggggc--g- uc-c-(uuac ---)ggacug uucua----- 1801 ---------- ------g-g- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccgguggagc 2161 (uuuguu--- ---------- ---------- ---)gcguca ccgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uucc|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCAGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-g-g-ga cu--(---au auuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gauuacc --------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUA)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 cgucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Epy.wilson 5903 bp RNA RNA 26-JUL-1996 DEFINITION Epymenia wilsonis.. ACCESSION No information KEYWORDS No information. SOURCE Epymenia wilsonis. ORGANISM Epymenia wilsonis. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33128 LOCUS EWU33128 1771 bp DNA PLN 26-JUL-1996 DEFINITION Epymenia wilsonis 18S ribosomal RNA gene, complete sequence. ACCESSION U33128 NID g1463108 KEYWORDS . SOURCE Epymenia wilsonis. ORGANISM Epymenia wilsonis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Epymenia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Epymenia wilsonis" /note="isolate G0130" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 434 a 375 c 512 g 450 t BASE COUNT 434 a 375 c 512 g 450 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gagugc-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- -----uauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acu ugccuc--g- uc-c-(ucgc ---)ggaugu uggca----- 1801 ---------- ------g-g- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuagugguuc 2161 (uuuacu--- ---------- ---------- ---)gcaucg cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuuc|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg ggc-g-g-gg cu--(---gu cauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cgggcga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u ccaaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaaa- ugga-cugug ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- cacg-gac-- 5761 cguuug-gcc -caaa-|cuu -ggccaagcc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Ery.podagr 5903 bp RNA RNA 11-JAN-191 DEFINITION Erythrocolon podagricum. ACCESSION No information KEYWORDS No information. SOURCE Erythrocolon podagricum. ORGANISM Erythrocolon podagricum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23953 LOCUS EPU23953 1772 bp rRNA PLN 24-DEC-1995 DEFINITION Erythrocolon podagricum small subunit ribosomal RNA gene. ACCESSION U23953 NID g1134904 KEYWORDS . SOURCE Erythrocolon podagricum. ORGANISM Erythrocolon podagricum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Erythrocolon. REFERENCE 1 (bases 1 to 1772) AUTHORS Millar,A.J.K., Saunders,G.W., Strachan,I.M. and Kraft,G.T. TITLE The morphology, reproduction and small-subunit rRNA gene sequence of Cephalocystis (Rhodymeniaceae, Rhodophyta), a new genus based on Cordylecladia furcellata J. Agardh from Australia JOURNAL Phycologia (1995) In press REFERENCE 2 (bases 1 to 1772) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (02-APR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 1134904 FEATURES Location/Qualifiers source 1..1772 /organism="Erythrocolon podagricum" /isolate="Voucher G0202" primer_bind 1..20 /note="5' PCR primer" rRNA 1..1772 /product="small subunit ribosomal RNA" primer_bind complement(1745..1772) /note="3' PCR primer" BASE COUNT 440 a 373 c 510 g 449 t ORIGIN BASE COUNT 440 a 373 c 510 g 449 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------a uac-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- -----uauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAGC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----aau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggu g-ggcg-auu ugccac--g- uc-c-(ucgc ---)ggacgu cggca----- 1801 ---------- ------g-g- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggggau--- cuagugguuc 2161 (uuuacu--- ---------- ---------- ---)gcaucg cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggc-g-g-ga cu--(---gu cauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cac-uggga- gggc-ugaa- cgaa-cugug ---------- ---------- 5701 -------(uu uc----)--- ---------- ---------- ---------- cacg-gau-- 5761 cauuug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Euc.dentic 5903 bp RNA RNA 11-JAN-191 DEFINITION Eucheuma denticulata. ACCESSION No information KEYWORDS No information. SOURCE Eucheuma denticulata. ORGANISM Eucheuma denticulata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U25439 LOCUS KAU25439 1777 bp DNA PLN 06-JUN-1995 DEFINITION Eucheuma denticulata 18S ribosomal RNA gene, complete sequence. ACCESSION U25439 KEYWORDS . SOURCE Eucheuma denticulata. ORGANISM Eucheuma denticulata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Eucheuma. REFERENCE 1 (bases 1 to 1777) AUTHORS Lluisma,A.O. and Ragan,M.A. TITLE Relationships among Eucheuma denticulatum, Eucheuma isiforme, and Kappaphycus alvarezii (Gigartinales, Rhodophyta) based on nuclear ssu-rRNA gene sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1777) AUTHORS Ragan,M.A. TITLE Direct Submission JOURNAL Submitted (20-APR-1995) Mark A. Ragan, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada COMMENT NCBI gi: 847814 FEATURES Location/Qualifiers source 1..1777 /strain="brown form" /organism="Eucheuma denticulata" primer_bind 1..22 /note="forward PCR primer" /evidence=experimental rRNA 1..1777 /product="18S ribosomal RNA" primer_bind complement(1755..1777) /note="reverse PCR primer" /evidence=experimental BASE COUNT 424 a 382 c 534 g 437 t ORIGIN BASE COUNT 424 a 382 c 534 g 437 t 4126 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 gugg<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -UCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggc g-ggcg-ggc uggggc--g- uc-u-(uuac ---)ggacgg uucca----- 1801 ---------- ------ggg- ccgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- ccggcgucgc 2161 (uucagu--- ---------- ---------- ---)gcgacg gcgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- cuCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-g-ga cu--(--uga auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAGG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGAcg c--gacuacc g-------(c uuuu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguggggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------A CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 cgucug-gcu -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Euc.isifor 5903 bp RNA RNA 11-JAN-191 DEFINITION Eucheuma isiforme. ACCESSION No information KEYWORDS No information. SOURCE Eucheuma isiforme. ORGANISM Eucheuma isiforme. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U25438 LOCUS EIU25438 1781 bp DNA PLN 06-JUN-1995 DEFINITION Eucheuma isiforme 18S ribosomal RNA gene, complete sequence. ACCESSION U25438 KEYWORDS . SOURCE Eucheuma isiforme. ORGANISM Eucheuma isiforme Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Eucheuma. REFERENCE 1 (bases 1 to 1781) AUTHORS Lluisma,A.O. and Ragan,M.A. TITLE Relationships among Eucheuma denticulatum, Eucheuma isiforme, and Kappaphycus alvarezii (Gigartinales, Rhodophyta) based on nuclear ssu-rRNA gene sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1781) AUTHORS Ragan,M.A. TITLE Direct Submission JOURNAL Submitted (20-APR-1995) Mark A. Ragan, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada COMMENT NCBI gi: 847812 FEATURES Location/Qualifiers source 1..1781 /strain="typical form" /organism="Eucheuma isiforme" rRNA 1..1781 /product="18S ribosomal RNA" primer_bind 1..22 /note="forward PCR primer" /evidence=experimental primer_bind complement(1759..1781) /note="reverse PCR primer" /evidence=experimental BASE COUNT 425 a 377 c 534 g 445 t ORIGIN BASE COUNT 425 a 377 c 534 g 445 t 4122 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 gugg<----- ---------- ---------- ---------- ---------- --uaaaauac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CG A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggc g-gacg-ggc uggggc--g- uc-u-(uuac ---)ggacgg aucca----- 1801 ---------- ------gguu ccgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- ccgugguugc 2161 (uucagu--- ---------- ---------- ---)gcgacg gcgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u uuCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGG-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-g-ga cu--(--uga auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gacuacc a-------(c uuuu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguggggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- ugga-cugug ---------- ---------- 5701 -------(uu c-----)--- ---------- ---------- ---------- cacg-gac-- 5761 cgucug-gcu -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Far.mollis 5903 bp RNA RNA 26-JUL-1996 DEFINITION Farlowia mollis.. ACCESSION No information KEYWORDS No information. SOURCE Farlowia mollis. ORGANISM Farlowia mollis. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rodophyta). 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33129 LOCUS FMU33129 1776 bp DNA PLN 26-JUL-1996 DEFINITION Farlowia mollis 18S ribosomal RNA gene, complete sequence. ACCESSION U33129 NID g1463109 KEYWORDS . SOURCE Farlowia mollis. ORGANISM Farlowia mollis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Farlowia. REFERENCE 1 (bases 1 to 1776) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1776) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1776 /organism="Farlowia mollis" /note="isolate G0158" rRNA 1..1776 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1749..1776) /note="3' PCR primer" BASE COUNT 420 a 375 c 534 g 447 t BASE COUNT 420 a 375 c 534 g 447 t 4127 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacgac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCCA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaguuu-ggc g-ggcg-acg cggggc--g- uc-u-(ucac ---)ggacgg uuucg----- 1801 ---------- ------g-g- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccagcggggc 2161 (uuuauu--- ---------- ---------- ---)gcguuc gcugu----- ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACCU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- cuCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-UGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg gac-a-g-ga cu--(---gu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gu-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cacuacu a-------(a uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----cuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-uuga- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caug-gac-- 5761 cgucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Fur.lumbri 5903 bp RNA RNA 11-JAN-191 DEFINITION Furcellaria lumbricalis. ACCESSION No information KEYWORDS No information. SOURCE Furcellaria lumbricalis. ORGANISM Furcellaria lumbricalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14141 ID FL18SRRNG standard; DNA; PLN; 1774 BP. XX AC Z14141; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE F.lumbricalis gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Furcellaria lumbricalis OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Gigartinales; Furcellariaceae. XX RN [1] RP 1-1774 RA Bird C.J., Murphy C.A., Rice E.L., Ragan M.A.; RT "The 18S rRNA gene sequences of four commercially important RT seaweeds"; RL Unpublished. XX RN [2] RP 1-1774 RA Ragan M.A.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL Ragan M. A., NRC Institute for Marine Biosciences, 1411 Oxford St, RL Halifax, Nova Scotia, Canada, B3H 3Z1 XX CC *source: is_macronuclear=N; CC *source: is_proviral=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1774 FT /product="18S ribosomal RNA" FT misc_feature 1..22 FT /note= "PCR_primer" /citation= ([1]) FT misc_feature 1748..1774 FT /note= "PCR_primer" /citation= ([1]) XX SQ Sequence 1774 BP; 427 A; 375 C; 533 G; 439 T; 0 other; BASE COUNT 427 a 375 c 533 g 439 t 4129 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-UGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacgac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggcg-acc uggggc--g- uc-u-(ucac ---)ggacgg aucca----- 1801 ---------- ------g-g- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccaguggagc 2161 (uucacu--- ---------- ---------- ---)gauuca cugu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uUCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGGGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-a-g-ga cu--(---gu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gacuacc --------(c uugu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-ugggg- ggga-ugaa- ugga-ccgug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 cguuug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA -)CCUGCAGA AGGUCAG--- 5881 --AAUU~~~~ ~~~~~~~~|| ||| // LOCUS Gal.margin 5903 bp RNA RNA 11-JUN-1997 DEFINITION Galaxaura marginata.. ACCESSION No information KEYWORDS No information. SOURCE Galaxaura marginata. ORGANISM Galaxaura marginata. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Rhodophyta: inferences from molecular systematic data Phylogenesis of pit-plug associated features in the JOURNAL Can. J. Bot. (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF006090 LOCUS AF006090 1772 bp DNA PLN 11-JUN-1997 DEFINITION Galaxaura marginata small-subunit ribosomal RNA gene, complete sequence. ACCESSION AF006090 NID g2183328 KEYWORDS . SOURCE Galaxaura marginata. ORGANISM Galaxaura marginata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodogorgonales; Galaxaura. REFERENCE 1 (bases 1 to 1772) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Phylogenesis of pit-plug associated features in the Rhodophyta: inferences from molecular systematic data JOURNAL Can. J. Bot. (1997) In press REFERENCE 2 (bases 1 to 1772) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (23-MAY-1997) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1772 /organism="Galaxaura marginata" primer_bind 1..20 rRNA 21..1744 /product="small-subunit ribosomal RNA" primer_bind complement(1744..1772) BASE COUNT 428 a 378 c 513 g 453 t BASE COUNT 428 a 378 c 513 g 453 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaucuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|guuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-uggc-ccg ugcugu--g- ug-c-(guaa u--)gcaugu ggcgc----- 1801 ---------- ------u-g- gggc-a---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- ucgucguggc 2161 (uuuauu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u uuCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gg au--(---ca cgau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c---cguuac --------(c uuug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcgcuu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gcUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-uu cgc(gaga-) gcgcu----u ccuaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- uugu-ugcg- aucg-gugcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcg-cug-- 5761 gccgca-aua -agaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Gar.tuberi 5903 bp RNA RNA 11-JAN-191 DEFINITION Gardneriella tuberifera. ACCESSION No information KEYWORDS No information. SOURCE Gardneriella tuberifera. ORGANISM Gardneriella tuberifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U43554 LOCUS GTU43554 1773 bp DNA PLN 25-JAN-1996 DEFINITION Gardneriella tuberifera small subunit rRNA gene, complete sequence. ACCESSION U43554 NID g1165233 KEYWORDS . SOURCE Gardneriella tuberifera. ORGANISM Gardneriella tuberifera Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Gardneriella. REFERENCE 1 (bases 1 to 1773) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1773) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165233 FEATURES Location/Qualifiers source 1..1773 /organism="Gardneriella tuberifera" /isolate="Stillwater Cove, Monterey Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1773 /product="small subunit rRNA" primer_bind complement(1741..>1773) /note="PCR primer" BASE COUNT 423 a 381 c 529 g 440 t ORIGIN BASE COUNT 422 a 381 c 527 g 438 t 4135 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 gugg<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUUUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGUAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACACGG -UAAA--CAG U-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAG--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggc g-ggca-ggc uggggc--g- uc-u-(uuac ---)cgacgg uucca----- 1801 ---------- ------gga- cugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- ccggcgucgc 2161 (uucagu--- ---------- ---------- ---)gcgucg gcgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGG-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- cuCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UCC U-UGGA-U-U 3061 GUCGG-AAG- --CAAACG-G CUGC(-GAAA )---C|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-g-ga cuu-(---ga uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-G---gc 4021 ag---GCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GUG GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gacuacc --------(c cuua-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugggac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCACCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 cgucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGUa---- -------~|| ||| // LOCUS Gela.acero 5903 bp RNA RNA 21-SEP-1998 DEFINITION Gelidiella acerosa.. ACCESSION No information KEYWORDS No information. SOURCE Gelidiella acerosa. ORGANISM Gelidiella acerosa. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60342 LOCUS GAU60342 1703 bp DNA PLN 21-SEP-1998 DEFINITION Gelidiella acerosa 18S ribosomal RNA gene, partial sequence. ACCESSION U60342 NID g1732125 KEYWORDS . SOURCE Gelidiella acerosa. ORGANISM Gelidiella acerosa Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidiella. REFERENCE 1 (bases 1 to 1703) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1703) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1703 /organism="Gelidiella acerosa" /strain="Oahu, Hawaii, USA" /db_xref="taxon:28867" rRNA <1..>1703 /product="18S ribosomal RNA" BASE COUNT 388 a 335 c 451 g 400 t 129 others BASE COUNT 388 a 335 c 451 g 400 t 4329 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-cguu-- ----ucuucg 241 gugg<----- ---------- ---------- ---------- ---------- ----uaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG N---->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|NNNUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggu g-ggcg-agg cagguc--a- uc-u-(uugc ---)ggauga aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c accuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuaguggugc 2161 (uuuauu--- ---------- ---------- ---)gccucg cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg gau-g-gcg- cu--(---gu uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-au-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GN 4021 NNCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(nnnnnn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNNNN- -NNN(NN-NN NN)NNGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cauuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggc-gagg-- ccu-uggga- gggc-uggu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.ameri 5903 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium americanum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium americanum. ORGANISM Gelidium americanum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60347 LOCUS GAU60347 1706 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium americanum 18S ribosomal RNA gene, partial sequence. ACCESSION U60347 NID g1732126 KEYWORDS . SOURCE Gelidium americanum. ORGANISM Gelidium americanum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1706) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1706) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1706 /organism="Gelidium americanum" /strain="Radio Island, Carteret Co., NC., USA" /db_xref="taxon:28854" rRNA <1..>1706 /product="18S ribosomal RNA" BASE COUNT 361 a 333 c 438 g 382 t 192 others BASE COUNT 361 a 333 c 438 g 382 t 4389 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNNN-NN )NNNN--NNN NNNNNNNNNN NN[nnn-nnn 4081 nnnn-nnnnn nn-----nnn nnn(nnnnnn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNNNN- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(u cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.caula 5903 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium caulacantheum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium caulacantheum. ORGANISM Gelidium caulacantheum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60343 LOCUS GCU60343 1704 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium caulacantheum 18S ribosomal RNA gene, partial sequence. ACCESSION U60343 NID g1732127 KEYWORDS . SOURCE Gelidium caulacantheum. ORGANISM Gelidium caulacantheum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Gelidium caulacantheum" /strain="Porirua Harbor, North Island, New Zealand" /db_xref="taxon:28016" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 385 a 343 c 461 g 405 t 110 others BASE COUNT 385 a 343 c 461 g 405 t 4309 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-NNN-NNNN N---->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(ucgc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuaguggugc 2161 (uuuauu--- ---------- ---------- ---)gccucg cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ----UUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-gggcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugann n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.flori 5903 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium floridanum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium floridanum. ORGANISM Gelidium floridanum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60351 LOCUS GFU60351 1704 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium floridanum 18S ribosomal RNA gene, partial sequence. ACCESSION U60351 NID g1732128 KEYWORDS . SOURCE Gelidium floridanum. ORGANISM Gelidium floridanum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Gelidium floridanum" /strain="Sebastian Inlet, FL, USA" /db_xref="taxon:28850" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 398 a 353 c 481 g 428 t 44 others BASE COUNT 398 a 353 c 481 g 428 t 4243 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAAA 1561 AGCA|GA-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-nncu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGN NN--NN-NN( --NNNN-)NN 3721 NNN-NNACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(u cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.lat.1 5903 bp RNA RNA 26-MAR-1997 DEFINITION Gelidium latifolium.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium. REFERENCE 1 (bases 1 to 2340) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Y11953 LOCUS GLY11953 1720 bp DNA PLN 26-MAR-1997 DEFINITION G.latifolium 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene. ACCESSION Y11953 NID g1911111 KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1720) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1720 /organism="Gelidium latifolium" rRNA 1..1720 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 414 a 366 c 505 g 435 t BASE COUNT 414 a 366 c 505 g 435 t 4183 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuguu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(u cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C C~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.lat.2 5903 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium latifolium.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60350 LOCUS GLU60350 1704 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium latifolium 18S ribosomal RNA gene, partial sequence. ACCESSION U60350 NID g1732129 KEYWORDS . SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Gelidium latifolium" /strain="Plouguerneau, Brittany, France" /db_xref="taxon:28851" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 385 a 341 c 459 g 392 t 127 others BASE COUNT 385 a 341 c 459 g 392 t 4326 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|NNNUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(nnnnnn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNNNN- -NNN(NN-NN NN)NNNNNA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(u cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.pus.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Gelidium pusillum. ACCESSION No information KEYWORDS No information. SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U32564 LOCUS GPU32564 1769 bp DNA PLN 17-AUG-1995 DEFINITION Gelidium pusillum small-subunit ribosomal RNA, partial sequence. ACCESSION U32564 KEYWORDS . SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945171 FEATURES Location/Qualifiers source 1..1769 /organism="Gelidium pusillum" /isolate="G0159" rRNA <1..>1769 /product="small-subunit ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 426 a 378 c 518 g 447 t ORIGIN BASE COUNT 426 a 378 c 518 g 447 t 4134 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.pus.2 5903 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium pusillum. str. sequence Fedje, Hordaland, Norway 18S ribosomal RNA gene, partial. ACCESSION No information KEYWORDS No information. SOURCE Gelidium pusillum. str. sequence Fedje, Hordaland, Norway 18S ribosomal RNA gene, partial. ORGANISM Gelidium pusillum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE separate and combined analyses of plastid rbcL and nuclear SSU gene sequences Molecular systematics of the Gelidiales: inferences from JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60352 LOCUS GPU60352 1704 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium pusillum strain Fedje, Hordaland, Norway 18S ribosomal RNA gene, partial sequence. ACCESSION U60352 NID g1732130 KEYWORDS . SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Gelidium pusillum" /strain="Fedje, Hordaland, Norway" /db_xref="taxon:31403" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 386 a 348 c 476 g 423 t 71 others BASE COUNT 386 a 348 c 476 g 423 t 4270 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGNN N---->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|NUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGNNN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.pus.3 5903 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium pusillum. str. Masonboro Inlet, New Hanover Co., NC, USA 18S ribosomal RNA gene, partial sequence. ACCESSION No information KEYWORDS No information. SOURCE Gelidium pusillum. str. Masonboro Inlet, New Hanover Co., NC, USA 18S ribosomal RNA gene, partial sequence. ORGANISM Gelidium pusillum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60355 LOCUS GPU60355 1705 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium pusillum strain Masonboro Inlet, New Hanover Co., NC, USA 18S ribosomal RNA gene, partial sequence. ACCESSION U60355 NID g1732131 KEYWORDS . SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1705 /organism="Gelidium pusillum" /strain="Masonboro Inlet, New Hanover Co., NC, USA" /db_xref="taxon:31403" rRNA <1..>1705 /product="18S ribosomal RNA" BASE COUNT 351 a 320 c 428 g 379 t 227 others BASE COUNT 351 a 320 c 428 g 379 t 4425 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG N---->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNNN-NN )NNNN--NNN NNNNNNNNNN NN[nnn-nnn 4081 nnnn-nnnnn nn-----nnn nnn(nnnnnn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNNUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGNGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--NG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.serru 5903 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium serrulatum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium serrulatum. ORGANISM Gelidium serrulatum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE separate and combined analyses of plastid rbcL and nuclear SSU gene sequences Molecular systematics of the Gelidiales: inferences from JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60340 LOCUS GSU60340 1706 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium serrulatum 18S ribosomal RNA gene, partial sequence. ACCESSION U60340 NID g1732132 KEYWORDS . SOURCE Gelidium serrulatum. ORGANISM Gelidium serrulatum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1706) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1706) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1706 /organism="Gelidium serrulatum" /strain="Mochimo, Sucre, Venezuela" /db_xref="taxon:31405" rRNA <1..>1706 /product="18S ribosomal RNA" BASE COUNT 395 a 357 c 486 g 429 t 39 others BASE COUNT 395 a 357 c 486 g 429 t 4236 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(u cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.ses.1 5903 bp RNA RNA 26-MAR-1997 DEFINITION Gelidium sesquipedale.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale. REFERENCE 1 (bases 1 to 2340) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Y11959 LOCUS GSY11959 1719 bp DNA PLN 26-MAR-1997 DEFINITION G.sesquipedale 18S rRNA gene. ACCESSION Y11959 NID g1911113 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1719) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1719) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1719 /organism="Gelidium sesquipedale" rRNA 1..1719 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 413 a 366 c 505 g 435 t BASE COUNT 413 a 366 c 505 g 435 t 4184 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCGUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccucu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(u cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GC-GC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C C~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.ses.2 5903 bp RNA RNA 21-SEP-1998 DEFINITION Gelidium sesquipedale.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE separate and combined analyses of plastid rbcL and nuclear SSU gene sequences Molecular systematics of the Gelidiales: inferences from JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60354 LOCUS GSU60354 1699 bp DNA PLN 21-SEP-1998 DEFINITION Gelidium sesquipedale 18S ribosomal RNA gene, partial sequence. ACCESSION U60354 NID g1732133 KEYWORDS . SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 1699) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1699) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1699 /organism="Gelidium sesquipedale" /strain="Aramar, Asturias, Spain" /db_xref="taxon:31406" rRNA <1..>1699 /product="18S ribosomal RNA" BASE COUNT 400 a 355 c 481 g 426 t 37 others BASE COUNT 400 a 355 c 481 g 426 t 4241 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAAA 1561 AGCA|GA-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGN NN--NN-NN( --NNNN-)NG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(u cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Gelm.vagum 5903 bp RNA RNA 11-JAN-191 DEFINITION Gelidium vagum. ACCESSION No information KEYWORDS No information. SOURCE Gelidium vagum. ORGANISM Gelidium vagum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26190 LOCUS GEAFRA 1769 bp ds-DNA PLN 30-JUN-1994 DEFINITION Gelidium vagum DNA fragment. ACCESSION L26190 KEYWORDS PCR amplified. SOURCE Gelidium vagum DNA. ORGANISM Gelidium vagum Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Gelidiales; Gelidiaceae. REFERENCE 1 (bases 1 to 1769) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507243 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1743..1769 /note="putative" source 1..1769 /organism="Gelidium vagum" /sequenced_mol="DNA" BASE COUNT 426 a 379 c 517 g 447 t BASE COUNT 426 a 379 c 517 g 447 t 4134 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg uucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(u cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA C)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Gig.crassi 5903 bp RNA RNA 07-DEC-1994 DEFINITION Gigartina crassicaulis. subsp. Sarcothalia crassifolia?. ACCESSION No information KEYWORDS No information. SOURCE Gigartina crassicaulis. subsp. Sarcothalia crassifolia?. ORGANISM Gigartina crassicaulis. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rhodophyta) I: Evidence for the Plocamiales ord. nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. (1994) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09615 LOCUS SCU09615 1773 bp DNA PLN 07-DEC-1994 DEFINITION Sarcothalia crassifolia small-subunit rRNA gene. ACCESSION U09615 NID g595307 KEYWORDS ribosomal RNA small subunit. SOURCE Gigartina crassicaulis. ORGANISM Gigartina crassicaulis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Gigartinaceae; Gigartina. REFERENCE 1 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia FEATURES Location/Qualifiers source 1..1773 /organism="Gigartina crassicaulis" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1773 /product="small-subunit rRNA" source 1..1773 /organism="Sarcothalia crassifolia" /isolate="VOUCHER GWS-G0011" primer_bind complement(1746..1773) /note="PCR 3' end primer" BASE COUNT 435 a 373 c 517 g 448 t BASE COUNT 435 a 373 c 517 g 448 t 4130 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacuac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-A( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggcc-guc cagggc--g- uc-c-(ucac ---)ggacgg gucug----- 1801 ---------- ------g-a- aggg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugg- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------a ugggggc--- ccaguggagc 2161 (uucacu--- ---------- ---------- ---)gcguca cugu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GUA-CAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggu-a-g-ga cu--(---au auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-ac-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gaguacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu acugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGUU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 uuucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Gle.furcat 5903 bp RNA RNA 26-JUL-1996 DEFINITION Gleiopeltis furcata.. ACCESSION No information KEYWORDS No information. SOURCE Gleiopeltis furcata. ORGANISM Gleiopeltis furcata. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE (Rodophyta). 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33130 LOCUS GFU33130 1773 bp DNA PLN 26-JUL-1996 DEFINITION Gloiopeltis furcata 18S ribosomal RNA gene, complete sequence. ACCESSION U33130 NID g1463110 KEYWORDS . SOURCE Gloiopeltis furcata. ORGANISM Gleiopeltis furcata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Gleiopeltis. REFERENCE 1 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1773) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1773 /organism="Gleiopeltis furcata" /note="isolate G0163" rRNA 1..1773 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1749..1773) /note="3' PCR primer" BASE COUNT 421 a 376 c 536 g 440 t BASE COUNT 421 a 376 c 536 g 440 t 4130 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaaugac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggu g-ggcg-acc uggggc--g- uc-c-(ucgc ---)ggacgg uucua----- 1801 ---------- ------g-g- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccgguggagc 2161 (uucauu--- ---------- ---------- ---)gcguca ccgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uucc|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-g-g-ga cu--(---gu aauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gauuacc --------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUA)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 cgucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Glo.frutic 5903 bp RNA RNA 26-JUL-1996 DEFINITION Gloioderma fruticulosa.. ACCESSION No information KEYWORDS No information. SOURCE Gloioderma fruticulosa. ORGANISM Gloioderma fruticulosa. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33131 LOCUS GFU33131 1767 bp DNA PLN 26-JUL-1996 DEFINITION Gloioderma fruticulosa 18S ribosomal RNA gene, complete sequence. ACCESSION U33131 NID g1463111 KEYWORDS . SOURCE Gloioderma fruticulosa. ORGANISM Gloioderma fruticulosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Endocladiaceae; Gloioderma. REFERENCE 1 (bases 1 to 1767) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1767) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1767 /organism="Gloioderma fruticulosa" /note="isolate G0059" rRNA 1..1767 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1749..1767) /note="3' PCR primer" BASE COUNT 437 a 374 c 501 g 455 t BASE COUNT 437 a 374 c 501 g 455 t 4136 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-guu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augu<----- ---------- ---------- ---------- ---------- ----uaauuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAGAG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGGUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -ACCC(---- ----aau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAU C-----UU-A U-CGA-GGAU C---->UAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggc g-ggcg-auc ugcauc--g- uc-c-(ucgc ---)ggacgc uugua----- 1801 ---------- ------g-g- ucga-c---- ---------c gccuuc---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggugc--- ucagcggcuc 2161 (uuuacu--- ---------- ---------- ---)gaguca cugc------ ---------- 2221 ----gugucc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUCUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AG UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- guuu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- AGC-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg gac-g-g-gg cu--(---gu -uuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gu-ucg-g ca-uccc--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 G-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGuu c--cguuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcguag--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----auGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -C-C(----- 5041 --GUCUA-)G GCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u ccuaac-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGAU-G-GGG AUUGAGGCU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA GG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggu-uaaa- cgga-cugug ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- caca-gac-- 5761 ugcuua-guc -ucaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Grac.chile 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria chilensis. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria chilensis. ORGANISM Gracilaria chilensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26217 LOCUS GRCFRE 1770 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria chilensis DNA fragment. ACCESSION L26217 NID g431025 KEYWORDS . SOURCE Gracilaria chilensis (individual_isolate ) DNA. ORGANISM Gracilaria chilensis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1770) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1770 /organism="Gracilaria chilensis" /isolate="New Zealand" /db_xref="taxon:2775" primer_bind 1..22 /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 444 a 369 c 503 g 454 t BASE COUNT 444 a 369 c 503 g 454 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagu--- cugguggugc 2161 (uuaauu--- ---------- ---------- ---)ggaucg ccag------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAC-UGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucag cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.corne 5903 bp RNA RNA 11-JAN-191 DEFINITION Gracilaria cornea. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria cornea. ORGANISM Gracilaria cornea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26212 LOCUS GRCFRA 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria cornea DNA fragment. ACCESSION L26212 NID g431028 KEYWORDS . SOURCE Gracilaria cornea DNA. ORGANISM Gracilaria cornea Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria cornea" /db_xref="taxon:31470" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /note="putative" BASE COUNT 445 a 370 c 503 g 453 t BASE COUNT 445 a 370 c 503 g 453 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--AAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagc--- gugguggugc 2161 (uuaauu--- ---------- ---------- ---)ggaucg cuac------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGCGUA A--UGGUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gaaau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCUGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UGGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uagg- cgaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGACAA--- 5881 --GCG~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.gra.1 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (Argentina) subsp. was Gracilaria verrucosa (Argentina). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (Argentina) subsp. was Gracilaria verrucosa (Argentina). ORGANISM Gracilaria gracilis (Argentina). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26205 LOCUS GRCFRB 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26205 NID g431022 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate ) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria verrucosa" /isolate="Argentina" /db_xref="taxon:2777" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" BASE COUNT 451 a 366 c 499 g 455 t BASE COUNT 451 a 366 c 499 g 455 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagc--- uagguggugc 2161 (uuaauu--- ---------- ---------- ---)ggaucg ccua------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.gra.2 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (France-3) subsp. was Gracilaria verrucosa (France-3). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (France-3) subsp. was Gracilaria verrucosa (France-3). ORGANISM Gracilaria gracilis (France-3). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26210 LOCUS GRCFRF 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26210 NID g431026 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate ) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria verrucosa" /isolate="France-3" /db_xref="taxon:2777" primer_bind 1..22 /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" BASE COUNT 452 a 366 c 499 g 454 t BASE COUNT 452 a 366 c 499 g 454 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagc--- uagguggugc 2161 (uuaauu--- ---------- ---------- ---)ggaucg ccua------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uc-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGA~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.gra.3 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (France-5) subsp. was Gracilaria verrucosa (France-5). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (France-5) subsp. was Gracilaria verrucosa (France-5). ORGANISM Gracilaria gracilis (France-5). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26211 LOCUS GRCFRH 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26211 NID g432999 KEYWORDS PCR amplified. SOURCE Gracilaria verrucosa (individual_isolate France-5) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria verrucosa" /isolate="France-5" /db_xref="taxon:2777" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" BASE COUNT 451 a 366 c 499 g 455 t BASE COUNT 451 a 366 c 499 g 455 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagc--- uagguggugc 2161 (uuaauu--- ---------- ---------- ---)ggaucg ccua------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.gra.4 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (Japan-1) subsp. was Gracilaria verrucosa (Japan-1). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (Japan-1) subsp. was Gracilaria verrucosa (Japan-1). ORGANISM Gracilaria gracilis (Japan-1). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26213 LOCUS GRCFRD 1770 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26213 NID g431024 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate ) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1770) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1770 /organism="Gracilaria verrucosa" /isolate="Japan (Hokkaido)" /db_xref="taxon:2777" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 452 a 365 c 498 g 455 t BASE COUNT 452 a 365 c 498 g 455 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagc--- uagguggugc 2161 (uuaauu--- ---------- ---------- ---)ggaucg ccua------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGU- AC-GAC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.gra.5 5903 bp RNA RNA 11-JAN-191 DEFINITION Gracilaria gracilis (isolate Norway) subsp. was Gracilaria verrucosa (isolate Norway). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (isolate Norway) subsp. was Gracilaria verrucosa (isolate Norway). ORGANISM Gracilaria gracilis (isolate Norway). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M33638 LOCUS GCOADDA 1771 bp ds-DNA PLN 12-JUN-1990 DEFINITION G.verrucosa 18S ribosomal RNA gene. ACCESSION M33638 KEYWORDS 18S ribosomal RNA. SOURCE G.verrucosa (isolate Norway) male tetrasporangial DNA. ORGANISM Gracilaria verrucosa Eukaryota; Plantae; Thallobionta; Rhodophycota; Rhodophyceae; Florideophycideae; Gigartinales; Gracilariaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Murphy,C.A., Rice,E.L. and Ragan,M.A. TITLE Nucleotide sequence of the 18S ribosomal RNA gene from the red alga Gracilaria verrucosa (Hudson) Papenfuss, Norway isolate JOURNAL Unpublished (1990) See COMMENT for author address STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by M.A.Ragan, 08-APR-1990. Atlantic Res. Lab., National Research Council of Canada, 1411 Oxford St., Halifax, Nova Scotia, CANADA B3H 3Z1 BASE COUNT 454 a 366 c 498 g 453 t ORIGIN BASE COUNT 454 a 366 c 498 g 453 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagc--- uagguggugc 2161 (uuaauu--- ---------- ---------- ---)ggauca ccua------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AAUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GC---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG*GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.gra.6 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria gracilis (Wales) subsp. was Gracilaria verrucosa (Wales) . ACCESSION No information KEYWORDS No information. SOURCE Gracilaria gracilis (Wales) subsp. was Gracilaria verrucosa (Wales) . ORGANISM Gracilaria gracilis (Wales). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26218 LOCUS GRCFRG 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria verrucosa DNA fragment. ACCESSION L26218 NID g431027 KEYWORDS . SOURCE Gracilaria verrucosa (individual_isolate ) DNA. ORGANISM Gracilaria verrucosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria verrucosa" /isolate="Wales" /db_xref="taxon:2777" primer_bind 1..22 /note="putative" primer_bind 1745..1771 /note="putative" BASE COUNT 452 a 365 c 499 g 455 t BASE COUNT 452 a 365 c 499 g 455 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagc--- uagguggugc 2161 (uuaauu--- ---------- ---------- ---)ggaucg ccua------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- CCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aua 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Gracila.sp 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria sp.. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria sp. ORGANISM Gracilaria sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26216 LOCUS GRCFRHA 1771 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria sp. DNA fragment. ACCESSION L26216 NID g433000 KEYWORDS PCR amplified. SOURCE Gracilaria sp. DNA. ORGANISM Gracilaria sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1771) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1771 /organism="Gracilaria sp." /db_xref="taxon:33673" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" BASE COUNT 454 a 366 c 498 g 453 t BASE COUNT 454 a 366 c 498 g 453 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagc--- uagguggugc 2161 (uuaauu--- ---------- ---------- ---)ggauca ccua------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AAUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GC---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.lem.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Gracilaria lemaneiformis. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria lemaneiformis. ORGANISM Gracilaria lemaneiformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X54263 ID GLE16S standard; DNA; PLN; 1723 BP. XX AC X54263; XX DT 02-OCT-1990 (annotation) XX DE Gracilaria lemaneiformis partial 16S ribosomal RNA XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Gracilaria lemaneiformis OC Eukaryota; Planta; Rhodophyta. XX RN [1] (bases 1-1723) RA Bhattacharya D., Elwood H.J., Goff L.J., Sogin M.L.; RT "Phylogeny of Gracilaria Lemaneiformis (Rhodophyta) Based on RT Sequence Analysis of its Small Subunit Ribososmal RNA Coding RT Region"; RL J. Phycol. 26:181-186(1990). XX FH Key From To Description FH FT RRNA <1 >1723 16S rRNA XX XX SQ Sequence 1723 BP; 425 A; 359 C; 495 G; 441 T; 3 other; BASE COUNT 425 a 359 c 495 g 441 t 4183 others ORIGIN 1 |~~~~~~~~~ ~~~~nnnnnn nnn(nnn)nn nn|nnnnnn- G-GU-A-UAU --GCUUGUCU 61 AUAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gagugu-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -CAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ugcg-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugu-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggu--- cugguggukc 2161 (uuaauu--- ---------- ---------- ---)gggcug ccag------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gac-a-a-ga cu--(---ga uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-gu-ucg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG*GU- GGU-R-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ccaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u ccgaau-cuc --caaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-- -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-ugaa- ugcg-cugu- ---------- ---------- 5701 -------(ua u-----)--- ---------- ---------- ---------- -acucgaa-- 5761 cuuuug-gcu -ugaa-|ccu -ggucaaacc yu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C Cnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.lem.2 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria lemaneiformis (VI). ACCESSION No information KEYWORDS No information. SOURCE Gracilaria lemaneiformis (VI). ORGANISM Gracilaria lemaneiformis (VI). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26214 LOCUS GROFRF 1773 bp DNA PLN 31-JAN-1994 DEFINITION Gracilariopsis lemaneiformis DNA fragment. ACCESSION L26214 NID g431031 KEYWORDS . SOURCE Gracilariopsis lemaneiformis (individual_isolate Vancouver Island, BC) DNA. ORGANISM Gracilariopsis lemaneiformis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariopsis. REFERENCE 1 (bases 1 to 1773) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1773 /organism="Gracilariopsis lemaneiformis" /isolate="Vancouver Island, BC" /db_xref="taxon:2782" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1747..1773 /standard_name="PCR primer" /note="putative" BASE COUNT 439 a 372 c 511 g 451 t BASE COUNT 439 a 372 c 511 g 451 t 4130 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AUAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gagugu-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -CAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauucu-ggu g-ugcg-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugu-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggu--- cugguggugc 2161 (uuaauu--- ---------- ---------- ---)gggcug ccag------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gac-a-a-ga cu--(---ga uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-gu-ucg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ccaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u ccgaau-cuc --caaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-ugaa- ugcg-cugu- ---------- ---------- 5701 -------(uu ac----)--- ---------- ---------- ---------- -uca-gaa-- 5761 cuuuug-gcu -ugaa-|ccu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGA~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.pacif 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilaria pacifica. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria pacifica. ORGANISM Gracilaria pacifica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26206 LOCUS GRCFRC 1770 bp DNA PLN 31-JAN-1994 DEFINITION Gracilaria pacifica DNA fragment. ACCESSION L26206 NID g431023 KEYWORDS . SOURCE Gracilaria pacifica (individual_isolate ) DNA. ORGANISM Gracilaria pacifica Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilaria. REFERENCE 1 (bases 1 to 1770) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1770 /organism="Gracilaria pacifica" /isolate="Bamfield, Vancouver Island, BC" /db_xref="taxon:31471" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 452 a 365 c 498 g 455 t BASE COUNT 452 a 365 c 498 g 455 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagc--- uagguggugc 2161 (uuaauu--- ---------- ---------- ---)ggaucg ccua------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Grac.tikva 5903 bp RNA RNA 11-JAN-191 DEFINITION Gracilaria tikvahiae McLachlan. ACCESSION No information KEYWORDS No information. SOURCE Gracilaria tikvahiae McLachlan. ORGANISM Gracilaria tikvahiae McLachlan. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M33640 LOCUS GCOEARA 1771 bp ds-DNA PLN 12-JUN-1990 DEFINITION G.tikvahiae McLachlan 18S ribosomal RNA gene. ACCESSION M33640 KEYWORDS 18S ribosomal RNA. SOURCE G.tikvahiae McLachlan (isolate Pomquet Harbour-Nova Scotia) DNA. ORGANISM Gracilaria tikvahiae McLachlan Eukaryota; Plantae; Thallobionta; Rhodophycota; Rhodophyceae; Florideophycideae; Gigartinales; Gracilariaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Liu,Q.-Y., Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Nucleotide sequence of the 18S ribosomal RNA gene from the red alga Gracilaria tikvahiae mclachlan JOURNAL Unpublished (1990) See COMMENT for author address STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by A.Ragan 08-APR-1990. Atlantic Research Lab, National Research Council of Canada, 1411 Oxford Street, Halifax, Nova Scotia CANADA B3H 3Z1 FEATURES from to/span description rRNA 1 1771 18S ribosomal RNA BASE COUNT 445 a 371 c 501 g 454 t ORIGIN BASE COUNT 445 a 371 c 501 g 454 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CCACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUUU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-ucug-acu uggguc--g- uc-c-(ucgc ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagu--- cagguggugc 2161 (uucacu--- ---------- ---------- ---)ggaucg cuug------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG*GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cgaguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaaa-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uaga- ugaa-cuga- ---------- ---------- 5701 -------(uu au----)--- ---------- ---------- ---------- -uca-gau-- 5761 cuuuug-gcu -ugaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Graci.sp.1 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilariopsis sp. Dorset. ACCESSION No information KEYWORDS No information. SOURCE Gracilariopsis sp. Dorset. ORGANISM Gracilariopsis sp. Dorset. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26208 LOCUS GROFRCA 1782 bp DNA PLN 31-JAN-1994 DEFINITION Gracilariopsis sp. DNA fragment. ACCESSION L26208 NID g431029 KEYWORDS . SOURCE Gracilariopsis sp. (individual_isolate Dorset, UK) DNA. ORGANISM Gracilariopsis sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariopsis. REFERENCE 1 (bases 1 to 1782) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1782 /organism="Gracilariopsis sp." /isolate="Dorset, UK" /db_xref="taxon:2783" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1756..1782 /standard_name="PCR primer" /note="putative" BASE COUNT 441 a 375 c 516 g 450 t BASE COUNT 441 a 375 c 516 g 450 t 4121 others ORIGIN 1 |~~~~~~~~~ ~~~~CCACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AUAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gagugu-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CUGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAAUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGU UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGA -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-ggc g-ugug-auu uggguc--g- uu-c-(ucgc ---)ggacgc gcuca----- 1801 ---------- ------g-a- uugu-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- agggggu--- gugguggugc 2161 (uugagu--- ---------- ---------- ---)gcgcug ccau------ ---------- 2221 ----gcugcc --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CAGGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggc-a-a-ga cu--(---ga uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-gu-ucg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC CUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc aa------(u ugag-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uuggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGC----- ---------- 5281 ---(------ ----)[ccaa cgagugga-- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u ccgaau-cuc --caaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-ugga- ugcg-cugu- ---------- ---------- 5701 -------(uu uuac--)--- ---------- ---------- ---------- -gca-gac-- 5761 auuuug-gcc -ugaa-|ccu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGU A)CCUGCAGA AGGACAA--- 5881 --GCG~~~~~ ~~~~~~~~|| ||| // LOCUS Graci.sp.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Gracilariopsis sp. England-1. ACCESSION No information KEYWORDS No information. SOURCE Gracilariopsis sp. England-1. ORGANISM Gracilariopsis sp. England-1. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M33639 LOCUS GRO18SAA 1782 bp ds-DNA PLN 14-AUG-1990 DEFINITION Gracilariopsis sp. 18S ribosomal RNA gene. ACCESSION M33639 KEYWORDS 18S ribosomla RNA. SOURCE Gracilariopsis sp. (isolate England-1) diploid tetrasporophyte DNA. ORGANISM Gracilariopsis sp. Eukaryota; Plantae; Thallobionta; Rhodophycota; Rhodophyceae; Florideophycideae; Gracilariaceae; Gracilariaceae. REFERENCE 1 (bases 1 to 1782) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A., Liu,Q.Y. and Ragan,M.A. TITLE Nucleotide sequences of the 18S ribosomal RNA gene from the red algae Gracilara tikvahiae McLachlan, Gracilaria verrucosa (Hudson) Papenfuss and Gracilariopsis sp JOURNAL Nucleic Acids Res. 18, 4023-4024 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by M.A.Ragan, 08-APR-1990. BASE COUNT 443 a 372 c 515 g 452 t ORIGIN BASE COUNT 443 a 372 c 515 g 452 t 4121 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AUAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gagugu-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CUGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAAUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGA -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-ggc g-ugug-auu uggguc--g- uu-c-(ucgc ---)ggacgc gcuca----- 1801 ---------- ------g-g- uugu-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- agggggu--- gugguggugc 2161 (uugagu--- ---------- ---------- ---)gcgcug ccau------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CAGGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gac-a-a-ga cu--(---ga uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-gu-ucg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG*GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc aa------(u ugag-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uuggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGC----- ---------- 5281 ---(------ ----)[ccaa cgagugga-- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u ccgaau-cuc --caaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-ugga- ugcg-cugu- ---------- ---------- 5701 -------(uu uuau--)--- ---------- ---------- ---------- -gca-gac-- 5761 auuuug-gcc -ugaa-|ccu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Graci.sp.3 5903 bp RNA RNA 31-JAN-1994 DEFINITION Gracilariopsis sp. England-2. ACCESSION No information KEYWORDS No information. SOURCE Gracilariopsis sp. England-2. ORGANISM Gracilariopsis sp. England-2. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26209 LOCUS GROFRD 1782 bp DNA PLN 31-JAN-1994 DEFINITION Gracilariopsis sp. DNA fragment. ACCESSION L26209 NID g431030 KEYWORDS . SOURCE Gracilariopsis sp. (individual_isolate England-2) DNA. ORGANISM Gracilariopsis sp. Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariopsis. REFERENCE 1 (bases 1 to 1782) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1782 /organism="Gracilariopsis sp." /isolate="England-2" /db_xref="taxon:2783" primer_bind 1..22 /note="putative" primer_bind 1756..1782 /note="putative" BASE COUNT 443 a 373 c 516 g 450 t BASE COUNT 443 a 373 c 516 g 450 t 4121 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AUAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gagugu-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CUGU AAAA-gcgc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAAUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGA -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-ggc g-ugug-auu uggguc--g- uu-c-(ucgc ---)ggacgc gcuca----- 1801 ---------- ------g-a- uugu-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- agggggu--- gugguggugc 2161 (uugagu--- ---------- ---------- ---)gcgcug ccau------ ---------- 2221 ----gcugcc --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CAGGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggc-a-a-ga cu--(---ga uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-gu-ucg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc aa------(u ugag-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uuggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGC----- ---------- 5281 ---(------ ----)[ccaa cgagugga-- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u ccgaau-cuc --caaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-ugga- ugcg-cugu- ---------- ---------- 5701 -------(uu uuac--)--- ---------- ---------- ---------- -gca-gac-- 5761 auuuug-gcc -ugaa-|ccu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Graci.sp.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Gracilariopsis sp.. ACCESSION No information KEYWORDS No information. SOURCE Gracilariopsis sp. ORGANISM Gracilariopsis sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26256 LOCUS GRORGE 1782 bp ds-DNA PLN 30-NOV-1993 DEFINITION Gracilariopsis sp. 18S ribosomal gene. ACCESSION L26256 KEYWORDS 18S ribosomal RNA. SOURCE Gracilariopsis sp. (individual_isolate North Carolina, ) DNA. ORGANISM Gracilariopsis sp. Eukaryota; Rhodophycota; Rhodophyceae; Florideophycideae; Gracilariales; Gracilariaceae. REFERENCE 1 (bases 1 to 1782) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" rRNA 23..1755 /product="18S ribosomal RNA" primer_bind 1756..1782 /standard_name="PCR primer" /note="putative" source 1..1782 /organism="Gracilariopsis sp." /isolate="North Carolina" /sequenced_mol="DNA" BASE COUNT 443 a 372 c 515 g 452 t ORIGIN BASE COUNT 443 a 372 c 515 g 452 t 4121 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AUAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gagugu-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CUGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAAUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGA -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-ggc g-ugug-auu uggguc--g- uu-c-(ucgc ---)ggacgc gcuca----- 1801 ---------- ------g-g- uugu-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- agggggu--- gugguggugc 2161 (uugagu--- ---------- ---------- ---)gcgcug ccau------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CAGGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- C-AGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gac-a-a-ga cu--(---ga uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-gu-ucg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc aa------(u ugag-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uuggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGC----- ---------- 5281 ---(------ ----)[ccaa cgagugga-- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u ccgaau-cuc --caaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-ugga- ugcg-cugu- ---------- ---------- 5701 -------(uu uuau--)--- ---------- ---------- ---------- -gca-gac-- 5761 auuuug-gcc -ugaa-|ccu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Grap.ory.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Gracilariophila oryzoides. ACCESSION No information KEYWORDS No information. SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U43555 LOCUS GOU43555 1789 bp DNA PLN 25-JAN-1996 DEFINITION Gracilariophila oryzoides small subunit rRNA gene, complete sequence. ACCESSION U43555 NID g1165230 KEYWORDS . SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariophila. REFERENCE 1 (bases 1 to 1789) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1789) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165230 FEATURES Location/Qualifiers source 1..1789 /organism="Gracilariophila oryzoides" /isolate="Pigeon Point, San Mateo Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1789 /product="small subunit rRNA" primer_bind complement(1757..>1789) /note="PCR primer" BASE COUNT 442 a 371 c 522 g 454 t ORIGIN BASE COUNT 441 a 371 c 520 g 452 t 4119 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AUAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-guu ------u--- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACCCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAAUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGGGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUGGAGG- -GCCC(---- ----gau)GG GU-UU-UCCA A-UUGGAAU- 1501 ------GAGA ----ACAAGA -UAAA--AAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-acc uggggc--g- uc-c-(ucgc ---)gggcgu uuucg----- 1801 ---------- ------g-g- uugu-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------g agggggu--- cugguggugc 2161 (uuaauu--- ---------- ---------- ---)gggcug ccag------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GCUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UGG CAUGGAA|UA -AUAGAG-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gac-a-a-ga cug-(----a uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----uggc-u u-gu-ucg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- uau-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cgcuacc aaa-----(u uuua-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ----uuuggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-U(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGC----- ---------- 5281 ---(------ ----)[ccaa cgagugca-- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u ccgaau-cuc --caaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-- -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-ugga- ugcg-cugu- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- -uac-gcaga 5761 cauuugugcu -ugaa-|ccu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGUa---- -------~|| ||| // LOCUS Grap.ory.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Gracilariophila oryzoides. ACCESSION No information KEYWORDS No information. SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U43556 LOCUS GOU43556 1789 bp DNA PLN 25-JAN-1996 DEFINITION Gracilariophila oryzoides small subunit rRNA gene, complete sequence. ACCESSION U43556 NID g1165231 KEYWORDS . SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariophila. REFERENCE 1 (bases 1 to 1789) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1789) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165231 FEATURES Location/Qualifiers source 1..1789 /organism="Gracilariophila oryzoides" /isolate="Four Mile Beach, Santa Cruz Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1789 /product="small subunit rRNA" primer_bind complement(1757..>1789) /note="PCR primer" BASE COUNT 443 a 370 c 521 g 455 t ORIGIN BASE COUNT 442 a 370 c 519 g 453 t 4119 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AUAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-guu ------u--- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACCCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAAUG G)CCU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUGGAGG- -GCCC(---- ----gau)GG GU-UU-UCCA A-UUGGAAU- 1501 ------GAGA ----ACAAGA -UAAA--AAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-cgug-acc uggggc--g- uc-c-(ucgc ---)gggcgu uuucg----- 1801 ---------- ------g-g- uugu-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------g agggggu--- cugguggugc 2161 (uuaauu--- ---------- ---------- ---)gggcug ccag------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAG-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gac-a-a-ga cug-(----a uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----uggc-u u-gu-ucg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- uau-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cgcuacc aaa-----(u uuua-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ----uuuggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-U(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGC----- ---------- 5281 ---(------ ----)[ccaa cgagugca-- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u ccgaau-cuc --caaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-- -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-ugga- ugcg-cugu- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- -uac-gcaga 5761 cauuugugcu -ugaa-|ccu -ggucaaacc uu-auc-a-c uuag-AGGAG GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGUa---- -------~|| ||| // LOCUS Grap.ory.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Gracilariophila oryzoides. ACCESSION No information KEYWORDS No information. SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U43557 LOCUS GOU43557 1788 bp DNA PLN 25-JAN-1996 DEFINITION Gracilariophila oryzoides small subunit rRNA gene, complete sequence. ACCESSION U43557 NID g1165232 KEYWORDS . SOURCE Gracilariophila oryzoides. ORGANISM Gracilariophila oryzoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Gracilariophila. REFERENCE 1 (bases 1 to 1788) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1788) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165232 FEATURES Location/Qualifiers source 1..1788 /organism="Gracilariophila oryzoides" /isolate="Stillwater Cove, Monterey Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1788 /product="small subunit rRNA" primer_bind complement(1756..>1788) /note="PCR primer" BASE COUNT 443 a 372 c 520 g 453 t ORIGIN BASE COUNT 442 a 372 c 518 g 451 t 4120 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G--U-A-UAU --GCUUGUCU 61 AUAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-guu ------u--- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 gugc<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACCCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAAUG G)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUGGAGG- -GCCC(---- ----gau)GG GU-UU-UCCA A-UUGGAAU- 1501 ------GAGA ----ACAAGA -UAAA--AAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc g-cgug-acc uggggc--g- uc-c-(ucgc ---)gggcgu uuucg----- 1801 ---------- ------g-g- uugu-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------g agggggu--- cugguggugc 2161 (uuaauu--- ---------- ---------- ---)gggcug ccag------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAG-UA -GGA-----c 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGG-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGGAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-ca gac-a-a-ga cug-(----a uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----uggc-u u-gu-ucg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUGUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- uau-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cgcuacc aaa-----(u uuua-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ----uuuggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-U(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGC----- ---------- 5281 ---(------ ----)[ccaa cgagugca-- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u ccgaau-cuc --caaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-- -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gacc-ugga- ugcg-cugu- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- -uac-gcaga 5761 cauuugugcu -ugaa-|ccu -ggucaaacc uu-guc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGUa---- -------~|| ||| // LOCUS Grat.fil.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Grateloupia filicina. ACCESSION No information KEYWORDS No information. SOURCE Grateloupia filicina. ORGANISM Grateloupia filicina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26191 LOCUS GTEFRA 1771 bp ds-DNA PLN 30-JUN-1994 DEFINITION Grateloupia filicina DNA fragment. ACCESSION L26191 KEYWORDS PCR amplified. SOURCE Grateloupia filicina (strain luxurians) DNA. ORGANISM Grateloupia filicina Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Cryptonemiales; Halymeniaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507248 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" source 1..1771 /organism="Grateloupia filicina" /strain="luxurians" /sequenced_mol="DNA" BASE COUNT 435 a 375 c 515 g 446 t ORIGIN BASE COUNT 435 a 375 c 515 g 446 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- -----uaaac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------GG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACGAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaauuu-ggc g-ggcg-acg ugaguc--g- uc-u-(uuac ---)cgacga ucuua----- 1801 ---------- ------u-g- uugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuaguggugc 2161 (uuaacc--- ---------- ---------- ---)gcuucg cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uUCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg ggc-g-g-gg cu--(----g uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga cu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuaGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGGU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- uagu-ccgug ---------- ---------- 5701 -------(uu uuu---)--- ---------- ---------- ---------- caca-gac-- 5761 cauuug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGACAG--- 5881 --AUU~~~~~ ~~~~~~~~|| ||| // LOCUS Grat.fil.2 5903 bp RNA RNA 26-JUL-1996 DEFINITION Grateloupia filicina.. ACCESSION No information KEYWORDS No information. SOURCE Grateloupia filicina. ORGANISM Grateloupia filicina. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33132 LOCUS GFU33132 1770 bp DNA PLN 26-JUL-1996 DEFINITION Grateloupia filicina 18S ribosomal RNA gene, complete sequence. ACCESSION U33132 NID g1463112 KEYWORDS . SOURCE Grateloupia filicina. ORGANISM Grateloupia filicina Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Grateloupia. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Grateloupia filicina" /note="isolate G0126" rRNA 1..1770 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 436 a 374 c 513 g 447 t BASE COUNT 436 a 374 c 513 g 447 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- -----uaaac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaauuu-ggc g-ggcg-acg ugaguc--g- uc-u-(uuac ---)cgacga ucuua----- 1801 ---------- ------u-g- uugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuaguggugc 2161 (uuaacc--- ---------- ---------- ---)gcuucg cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uucc|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg ggc-g-g-gg cu--(---gu -uuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuaGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGGU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- uagu-ccgug ---------- ---------- 5701 -------(uu uuu---)--- ---------- ---------- ---------- caca-gac-- 5761 cauuug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Gri.globif 5903 bp RNA RNA 11-JAN-191 DEFINITION Griffithsia globulifera. ACCESSION No information KEYWORDS No information. SOURCE Griffithsia globulifera. ORGANISM Griffithsia globulifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26192 GRIFFITHSIA GLOBIFERA, red algae sequence from M.Ragan. LOCUS GFFFRA 1768 bp ds-DNA PLN 30-JUN-1994 DEFINITION Griffithsia globulifera DNA fragment. ACCESSION L26192 KEYWORDS PCR amplified. SOURCE Griffithsia globulifera DNA. ORGANISM Griffithsia globulifera Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Ceramiales; Ceramiaceae. REFERENCE 1 (bases 1 to 1768) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507244 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1743..1768 /standard_name="PCR primer" /note="putative" source 1..1768 /organism="Griffithsia globulifera" /sequenced_mol="DNA" BASE COUNT 427 a 376 c 519 g 446 t BASE COUNT 427 a 376 c 519 g 446 t 4135 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuguu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-g-g-cg cug-(----c uuua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----uggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGuG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(u cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGAGAA GGAUCAG--- 5881 --AA~~~~~~ ~~~~~~~~|| ||| // LOCUS Gri.monili 5903 bp RNA RNA 11-JAN-191 DEFINITION Griffithsia monilis. ACCESSION No information KEYWORDS No information. SOURCE Griffithsia monilis. ORGANISM Griffithsia monilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U32565 LOCUS GMU32565 1769 bp DNA PLN 17-AUG-1995 DEFINITION Griffithsia monilis small-subunit ribosomal RNA, partial sequence. ACCESSION U32565 KEYWORDS . SOURCE Griffithsia monilis. ORGANISM Griffithsia monilis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Ceramiaceae; Griffithsia. REFERENCE 1 (bases 1 to 1769) AUTHORS Saunders,G.W., Strachan,I.M., West,J.A. and Kraft,G.T. TITLE Nuclear small-subunit ribosomal RNA gene sequences from representative Ceramiaceae (Ceramiales, Rhodophyta) JOURNAL Eur. J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1769) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (27-JUL-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada COMMENT NCBI gi: 945170 FEATURES Location/Qualifiers source 1..1769 /organism="Griffithsia monilis" /isolate="G0251" rRNA <1..>1769 /product="small-subunit ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1742..1769) /note="3' PCR primer" BASE COUNT 451 a 367 c 490 g 461 t ORIGIN BASE COUNT 451 a 367 c 490 g 461 t 4134 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-guu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 ggga<----- ---------- ---------- ---------- ---------- ---uuuauac 301 u>AC-CGG-A UAUCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUA---- ----(----) 361 ---------- -------(-- --)--|---- --<-cgcaa- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- -acacggg-- ---a(----- ---------u uuu------- 601 ---------- ---------- ---)u---cu cgug--|GUA CUUAUUAUC- -GAUA-CAA- 661 gccaa----- ---------- --------(- ---------- ---------- ---------- 721 ------cuug -)-------- ---------- ---------- -----uuugg UG--AUUCUA 781 A-AUAAUUUU U--------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|CGG-AUCG -A-----a(- ----uuua-- ---------- -------)u- ----U-CGAC 1081 ---------> -gccccguuc -aa|auuucu ga|--CCU-A UCA--ACUUC G-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGGGG- -GCCC(---- ----aau)GG GC-UU-CCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CGG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-ggc g-ggca-ccg uggauc--g- uu-c-(gcga ---)gaaugu uucua----- 1801 ---------- ------c-g- uugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- ucgauggcgc 2161 (uuuauu--- ---------- ---------- ---)gcuucg uuga------ ---------- 2221 ----gucacc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-A-CGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugugu---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|-UAUU 2821 -UU-GUUGGU -UUuGU---- ------UAA- GUU-CAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-CC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UA|--- 3421 --gggau-cg ggc-g-uauu ----(---cu uuug-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----uua-a c-gc-ucg-g ca-ccuu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 ucag-uagga uu-----aac aga(uugaga g-c)------ ucuuu----- uuu-gauu-u 4141 gauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-AG|- ---------- 4321 ------(--- --)[CGC-GC UAAUUAcucg a--gcuugg- --------(c uugu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------cc aaguacaa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----acuga- ga-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U AUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-UCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ga ugc(gaaa-) gcacu----a ccuaau-cuc --uaaa]--- ---------- 5461 -------ccc gcu-c-g--- uGAU-G-GGG AUUGAGGCU( UGCAAUUU)U CCCUCCUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-cggga- gggc-uaau- ugaa-cugu- ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- -aca-gau-- 5761 cuuuug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Halo.gland 5903 bp RNA RNA 11-JAN-191 DEFINITION Halosaccion glandiforme. ACCESSION No information KEYWORDS No information. SOURCE Halosaccion glandiforme. ORGANISM Halosaccion glandiforme. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26193 HALOSACCION GLANDIFORME, red algae sequence from M.Ragan. LOCUS HCCFRA 1771 bp ds-DNA PLN 30-JUN-1994 DEFINITION Halosaccion glandiforme DNA fragment. ACCESSION L26193 KEYWORDS PCR amplified. SOURCE Halosaccion glandiforme DNA. ORGANISM Halosaccion glandiforme Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Palmariales; Palmariaceae. REFERENCE 1 (bases 1 to 1771) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507249 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1745..1771 /standard_name="PCR primer" /note="putative" source 1..1771 /organism="Halosaccion glandiforme" /sequenced_mol="DNA" BASE COUNT 430 a 385 c 515 g 441 t BASE COUNT 430 a 385 c 515 g 441 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-u-(guaa u--)gcgugc ggc------- 1801 ---------- ------g-c- uggg------ ------gcgc gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- -ggcggc--- gcguuguggc 2161 (uuuacu--- ---------- ---------- ---)gucacg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uUUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGC|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---AUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-a-g-gc au--(----- uacg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c u-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcuguu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cgcCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-cgcg- guug-aggcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcc-cug-- 5761 gccgca-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGAUCAG--- 5881 --AAU~~~~~ ~~~~~~~~|| ||| // LOCUS Hali.roseu 5903 bp RNA RNA 16-DEC-1996 DEFINITION Haliptilon roseum.. ACCESSION No information KEYWORDS No information. SOURCE Haliptilon roseum. ORGANISM Haliptilon roseum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60947 LOCUS HRU60947 1724 bp DNA PLN 16-DEC-1996 DEFINITION Haliptilon roseum nuclear 18S rRNA gene, partial sequence. ACCESSION U60947 NID g1732171 KEYWORDS . SOURCE Haliptilon roseum. ORGANISM Haliptilon roseum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Haliptilon. REFERENCE 1 (bases 1 to 1724) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1724) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1724 /organism="Haliptilon roseum" /strain="Pt. Lonsdale, Victoria, Australia" rRNA <1..>1724 /product="18S rRNA" BASE COUNT 409 a 334 c 438 g 415 t 128 others BASE COUNT 409 a 334 c 438 g 415 t 4307 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uc-a-acac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- ----uuuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaccguuc -ga|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUUCU-G( ---acu--)C 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -AGCC(---- ----uua)GG UU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc a-auuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc acuu------ 1801 ---------- ------ugcg ggga-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------c- augcgug-gg augaugcaac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 --ccuacgca --------ac cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uc-n------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -nnn|-NNNN 2821 -NN-NNNNNN -NN-NN---- ------NNN- NNN-NNNNNN N--NNNNNNN NN--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 --NNNNNNNN NN|--NNNNN NNNNNNN-NN -NNNN(NN-N NNN---)NNN N-NNNN-N-N 3061 NNNNN-NNN- N-NNNNNN-N NNNN(-NNNN )--NN|N--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-NN( --NNAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uauuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-cUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gana-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-ucgga- ungc-aaga- gaaa-gaggu ---------- ---------- 5701 -------(uu c-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuauu-gug -agaa-|nuc -agucgaacc uu-auc-a-u uuag-AGGAA GG~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Haly.plana 5903 bp RNA RNA 26-JUL-1996 DEFINITION Halymenia plana.. ACCESSION No information KEYWORDS No information. SOURCE Halymenia plana. ORGANISM Halymenia plana. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33133 LOCUS HPU33133 1770 bp DNA PLN 26-JUL-1996 DEFINITION Halymenia plana small-subunit ribosomal RNA gene, complete sequence. ACCESSION U33133 NID g1463113 KEYWORDS . SOURCE Halymenia plana. ORGANISM Halymenia plana Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Halymenia. REFERENCE 1 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1770) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1770 /organism="Halymenia plana" /note="isolate G0070" rRNA 1..1770 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1743..1770) /note="3' PCR primer" BASE COUNT 434 a 371 c 512 g 453 t BASE COUNT 434 a 371 c 512 g 453 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- -----uaaac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaauuu-ggc g-ggcg-acu uaaguc--g- uc-u-(uuac ---)cgacga ucuua----- 1801 ---------- ------g-g- uugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuaguggugc 2161 (uuaacc--- ---------- ---------- ---)gcuucg cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguuuucua ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --------UU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg ggc-g-g-gg cu--(---gu -uuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuaGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- uagu-cggug ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- caca-gau-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Hey.woelke 5903 bp RNA RNA 16-DEC-1996 DEFINITION Heydrichia woelkerlingii.. ACCESSION No information KEYWORDS No information. SOURCE Heydrichia woelkerlingii. ORGANISM Heydrichia woelkerlingii. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61253 LOCUS HWU61253 1758 bp DNA PLN 16-DEC-1996 DEFINITION Heydrichia woelkerlingii nuclear 18S rRNA gene, partial sequence. ACCESSION U61253 NID g1732175 KEYWORDS . SOURCE Heydrichia woelkerlingii. ORGANISM Heydrichia woelkerlingii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Sporolithaceae; Heydrichia. REFERENCE 1 (bases 1 to 1758) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1758) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1758 /organism="Heydrichia woelkerlingii" /strain="Betty's Bay, South Africa" rRNA <1..>1758 /product="18S rRNA" BASE COUNT 421 a 368 c 516 g 451 t 2 others BASE COUNT 421 a 368 c 516 g 451 t 4147 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCUCUA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaccuac 301 u>ACUCGG-A UAANCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aaa--)U 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----gau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -CAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-gccu-ngc gagugu--g- cg-c-(gucg a--)gcgugu acuu------ 1801 ---------- ------g-u- cggggg---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugg- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------g cagcgug--c gucuggcggc 2161 (uuuacu--- ---------- ---------- ---)gucguu cgcg------ ---------- 2221 ---ugaugcg cu------uc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUUGAA-UA -GGA-----c 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uUUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gug-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGag c--uaguacc a-------(u uc-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugagu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uacUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucag cgggugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u ccuaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGACGGU( UGCAAUUU)U CCGUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- cuga-cgug- aggg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 uucuug-ucg -ggaa-|cuu -agucgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rubr.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Hildenbrandia rubra. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19345 LOCUS HLDRGEA 2283 bp ds-DNA PLN 05-AUG-1993 DEFINITION Hildenbrandia rubra 18S ribosomal RNA gene, complete exons. ACCESSION L19345 KEYWORDS 18S ribosomal RNA. SOURCE Hildenbrandia rubra vegetative DNA. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophycota; Rhodophyceae; Florideophycideae; Cryptonemiales; Hildenbrandiaceae. REFERENCE 1 (bases 1 to 2283) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L. and Singh,R.K. TITLE The nuclear 18S ribosomal RNA gene of the red alga Hildenbrandia rubra contains a group I intron JOURNAL Nucleic Acids Res. 21, 3898-3898 (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..22 /note="PCR amplification primer; putative" exon 23..1750 /product="18S ribosomal RNA" /note="putative" intron 1751..2252 /note="group I intron; putative" exon 2253..2256 /product="18S ribosomal RNA" /note="putative" primer_bind 2257..2281 /note="PCR amplification primer; putative" source 1..2283 /organism="Hildenbrandia rubra" /sequenced_mol="DNA" /tissue_type="vegetative" BASE COUNT 563 a 476 c 684 g 559 t 1 others ORIGIN HILDENBRANDIA RUBRA (including INTRON between asterisks) red algae sequence from M.Ragan. BASE COUNT 447 a 365 c 524 g 444 t 4123 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAG --UCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 gggg<----- ---------- ---------- ---------- ---------- ----uaauac 301 u>AC-CGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -accccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAYU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUACU-A( ---auu--)C 1321 AGUG-A-GGU -|A|GUGACA AAGA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GGCC(---- ----auc)GG CU-CU-UCUA G-UUGGAAU- 1501 ------GAGU ----ACAGAG -UAAA--CAA U-----UU-A A-CGA-GGAC C---->AAUA 1561 GGAG|GG-CA A-GC-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UA-|CUCCUA 1621 G-GGUGUU|U GUUCA--CAG UGCUG-CAG| UUA--AAAAG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuaugag c-uggg-cgg uggugu--g- gg-c-(gcaa ---)gccugu ggug------ 1801 ---------- ------c-c- gccc-g---- ---------g cucuuuu--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- auggccg--- gaguaggguu 2161 (uuaagc--- ---------- ---------- ---)ggcuuu gcuc------ ---------- 2221 ----cgggcg --------uc cccc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUGAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 -------AUG AGCC-G-UGA AUACCA-UAG CAUGGAA|UA -AUAGAA-UA -GGG-----c 2581 cgcugau--- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -GCC|-UAUU 2821 -UU-GUUGGU -UU-CG---- ------AGG- UGU-CGGGCA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGUCA UU|--UGUAU UAAGUCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GACGU-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGAC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUAAG AAC|UG|--- 3421 --GGgau-cg gaa-g-a-gu auuu(----- aaau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---agggc-u c-au-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAGUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-AG|- ---------- 4321 ------(--- --)[CGU-GG UAGCUAGGgg a--cuugugc a-------(u uua----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ugca cgggcuuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUACACG]- --|------- ---------- GACU-GCU-G -G-C(----- 5041 --GAAUA-)G UCAG-C-GGA AGCC-UCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-UGA-UGUU CUGG-GCCGC A-CGCGCGCU GCACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccag cgggcga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua gcc(gaaa-) gguuu----u ccggac-ccu --uaaa]--- ---------- 5461 -------uuc gcu-c-g--- UGCU-G-GGG AUGGAGGCU( UGCAAUUG)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA GG-CGU-GAG (-UCAUCAG- )CUCGC-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGAGGA- 5641 ggu-gaga-- agu-uggga- ggug-uugg- uucg-ggccc ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------g gugu-cug-- 5761 ggcuag-cgc -uaaa-|cuc -guucaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Hil.rubr.2 5903 bp RNA RNA 14-SEP-1998 DEFINITION Hildenbrandia rubra.. ACCESSION No information KEYWORDS No information. SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Molecular systematic analyses indicate that the enigmatic Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF076995 LOCUS AF076995 2268 bp DNA PLN 14-SEP-1998 DEFINITION Hildenbrandia rubra small subunit ribosomal RNA gene, complete sequence. ACCESSION AF076995 NID g3598963 KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 2268) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Molecular systematic analyses indicate that the enigmatic Apophlaea is a member of the Hildenbrandiales (Rhodophyta, Florideophycidae) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2268) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (09-JUL-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..2268 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" primer_bind 1..20 /note="Hild2" rRNA join(21..1724,2238..2241) /note="nuclear SSU rRNA" /product="small subunit ribosomal RNA" intron 1725..2237 /note="putative group I intron" primer_bind complement(2242..2268) /note="G07" BASE COUNT 577 a 481 c 658 g 551 t 1 others BASE COUNT 435 a 364 c 513 g 444 t 4147 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~CAUGC A-AGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-auu ---------- -uu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU ACAA-cagu- aau-aauc-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- --uacacuac 301 u>AGUCGG-A UAUCCCUAG( -UAUAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuu -ga|auuucu ga|--CCU-A UCA--AGUUU U-GAUGGUA- 1141 AG(-AUAGAG U)CUU-ACCA U-|GCUAG-U GAC|GGGU-G A-CGGG|GAA -U-(GAGG-) 1201 GUU-UGGUU- CCA|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AAGA-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GGCC(---- ----auc)GG CU-CU-UCUA G-UUGGAAU- 1501 ------GAGA ----ACAGAG -UAAA--CAA U-----UU-A A-CGA-GGAC C---->AAUA 1561 GGAG|GG-CA A-GC-C-AAG U-G(CCA-GC -AGCC|GC-G GU-AA)UACU UA-|CUCCUA 1621 G-GGUGUU|U GUUCA--CAG UGCUG-CAG| UUA--AAAAG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuaugag c-uggg-uga uggugu--g- gg-c-(gcaa ---)gccugu gcug------ 1801 ---------- ------u-c- gcuc-g---- ---------g cucuuuu--- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gggga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag uuguuug--- gagugauguu 2161 (uuaauc--- ---------- ---------- ---)gacuuu gcuc------ ---------- 2221 ----caggcg --------uc cccc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUGAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 -------AUG AGCC-G-UGA AUACCA-UAG CAUGGAA|UA -AUAGAA-UA -GGG-----c 2581 cg-ugau--- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -GCC|-UAUU 2821 -UU-GUUGGU -UU-CG---- ------AGG- UGU-CGGGCA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGUCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GACGU-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUAAG AAC|UG|--- 3421 --GGgau-cg gaa-g-a-gu au--(-uuuu acuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-uu-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-AG UAGCUAGGag a--cuggugc a-------(u uua----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ugca ccggc-u--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUACACG]- --|------- ---------- GACU-GCU-G -G-C(----- 5041 --GAAUA-)G UCAG-C-GGA AGCC-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-UGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccac cgggcga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug gcc(gaaa-) gguuu----u ccggac-ccc --uaaa]--- ---------- 5461 -------uuc gcu-c-g--- UGCU-G-GGG AUGGAGGCU( UGCAAUUG)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGAGGA- 5641 ggu-gagg-- acu-uggga- ggug-cugg- uucg-ggccc ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------g gugu-cug-- 5761 agcuag-cgc -uaaa-|cuc -guucgaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Jan.crassa 5903 bp RNA RNA 16-DEC-1996 DEFINITION Jania crassa.. ACCESSION No information KEYWORDS No information. SOURCE Jania crassa. ORGANISM Jania crassa. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U62113 LOCUS JCU62113 1717 bp DNA PLN 16-DEC-1996 DEFINITION Jania crassa nuclear 18S rRNA gene, partial sequence. ACCESSION U62113 NID g1732186 KEYWORDS . SOURCE Jania crassa. ORGANISM Jania crassa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Jania. REFERENCE 1 (bases 1 to 1717) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1717) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1717 /organism="Jania crassa" /strain="Palm Beach, Natal, South Africa" rRNA <1..>1717 /product="18S rRNA" BASE COUNT 434 a 350 c 473 g 459 t 1 others BASE COUNT 434 a 350 c 473 g 459 t 4187 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uc-a-acac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- -uuuuuuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaccguuc -ga|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GN- AAAUU-ACCC -AAUACU-A( ---auu--)C 1321 AGUG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc a-guuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc acuu------ 1801 ---------- ------ugca ggga-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- augcguu-gg augaugcaac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 --ccuacgca --------ac cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucug------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GGC-GGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUCGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCCGA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-g-a-gg aau-(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGag c--uauuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguauguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-cUU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaga-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAACUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-ucgga- ucgu-gaug- ggaa-ga-cg ---------- ---------- 5701 -------(uu uc----)--- ---------- ---------- ---------- cgcu-ugu-- 5761 ccuuuu-gug -agaa-|guc -agucgaacc uu-auc-a-u ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Jan.rubens 5903 bp RNA RNA 16-DEC-1996 DEFINITION Jania rubens.. ACCESSION No information KEYWORDS No information. SOURCE Jania rubens. ORGANISM Jania rubens. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61259 LOCUS JRU61259 1668 bp DNA PLN 16-DEC-1996 DEFINITION Jania rubens nuclear 18S rRNA gene, partial sequence. ACCESSION U61259 NID g1732176 KEYWORDS . SOURCE Jania rubens. ORGANISM Jania rubens Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Jania. REFERENCE 1 (bases 1 to 1668) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1668) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1668 /organism="Jania rubens" /strain="Galway, Ireland" rRNA <1..>1668 /product="18S rRNA" BASE COUNT 331 a 302 c 375 g 347 t 313 others BASE COUNT 331 a 302 c 375 g 347 t 4548 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaauaau ---------- -ca-a-c-ac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- ----uuuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaccguuc -ga|auuucu ga|--CCU-A UCA--ACUCU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc a-guuc-cgg augugu--a- cg-c-(gucg u--)gcgcgc acuu------ 1801 ---------- ------ugcn ggga-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugg- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gu augcgug-gg augaggcaac 2161 (uuuauu--- ---------- ---------- ---)gucgaa cguc------ ---------- 2221 --ccuacgca --------ac cac------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UCUUACUG UG-AGAA--A 2461 AUUAGANNNN NN-NN-NN-N NNNNN----- ---------- ---------- ---------- 2521 --------NN NNNN-N-NNN NNNNNN-NNN NNNNNNN|NN -NNNNNN-NN -NNN-----n 2581 nnnn------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- nNNN|-NNNN 2821 -NN-NNNNNN -NN-NN---- ------NNN- NNN-NNNNNN N--NNNNNNN NN--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 --NNNNNNNN NN|--NNNNN NNNNNNN-NN -NNNN(NN-N NNN---)NNN N-NNNN-N-N 3061 NNNNN-NNN- N-NNNNNN-N NNNN(-NNNN )--NN|N--- NNNNNN-NN| NN-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------NNN ---NNNNNNN -NNN-N|NN- N-NNNNNNNN 3301 NNNNNNNNN- NNNNNNNNN( NNNN------ ---------- ---------- ---------- 3361 ---------- NNNNN)NN-N -NNNNN|NNN NN--NNN-NN NNNNNNNNNN NNN|NN|--- 3421 --NNnnn-nn nnn-n-n-nn nn--(----n nnnnn----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------nn-n n-nn-nnn-n nn-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 A-CCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGag c--uauuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacgu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaga-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AA-CGC-GGG (-UCAUCAU- )CCCGC-G-N -NGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-ucgga- uugc-gaca~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Kap.alvare 5903 bp RNA RNA 11-JAN-191 DEFINITION Kappaphycus alvarezii. ACCESSION No information KEYWORDS No information. SOURCE Kappaphycus alvarezii. ORGANISM Kappaphycus alvarezii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U25437 LOCUS KAU25437 1767 bp DNA PLN 06-JUN-1995 DEFINITION Kappaphycus alvarezii 18S ribosomal RNA gene, complete sequence. ACCESSION U25437 KEYWORDS . SOURCE Kappaphycus alvarezii. ORGANISM Kappaphycus alvarezii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Kappaphycus. REFERENCE 1 (bases 1 to 1767) AUTHORS Lluisma,A.O. and Ragan,M.A. TITLE Relationships among Eucheuma denticulatum, Eucheuma isiforme, and Kappaphycus alvarezii (Gigartinales, Rhodophyta) based on nuclear ssu-rRNA gene sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1767) AUTHORS Ragan,M.A. TITLE Direct Submission JOURNAL Submitted (20-APR-1995) Mark A. Ragan, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada COMMENT NCBI gi: 847813 FEATURES Location/Qualifiers source 1..1767 /strain="brown form" /organism="Kappaphycus alvarezii" rRNA 1..1767 /product="18S ribosomal RNA" primer_bind 1..22 /note="forward PCR primer" /evidence=experimental primer_bind complement(1745..1767) /note="reverse PCR primer" /evidence=experimental BASE COUNT 425 a 377 c 531 g 434 t ORIGIN BASE COUNT 425 a 377 c 531 g 434 t 4136 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-guu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 gugg<----- ---------- ---------- ---------- ---------- ----uaauac 301 u>ACU--G-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-AC-UC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaguuu-ggc g-ggcg-ggc uggggc--g- uc-u-(uuac ---)ggacgg aucu------ 1801 ---------- ------gggg ccgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccggcgucgc 2161 (uucacu--- ---------- ---------- ---)gcgacg gcgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-g-ga ccu-(---ga aauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gcg-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUU 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gacuacc g-------(c uuuu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------ugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) cggcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 cgucug-gcu -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lem.fluvia 5903 bp RNA RNA 05-NOV-1997 DEFINITION Lemanea fluviatilis.. ACCESSION No information KEYWORDS No information. SOURCE Lemanea fluviatilis. ORGANISM Lemanea fluviatilis. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026051 LOCUS AF026051 1765 bp DNA PLN 05-NOV-1997 DEFINITION Lemanea fluviatilis 18S ribosomal RNA gene, complete sequence. ACCESSION AF026051 NID g2564934 KEYWORDS . SOURCE Lemanea fluviatilis. ORGANISM Lemanea fluviatilis Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Lemaneaceae; Lemanea. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Lemanea fluviatilis" /db_xref="taxon:67900" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 424 a 380 c 522 g 439 t BASE COUNT 424 a 380 c 522 g 439 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -ua-u--gac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-ccg ggcugu--g- cg-c-(guaa u--)gcgugc ggcg------ 1801 ---------- ------c-g- gggc-g---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uucacu--- ---------- ---------- ---)guugcg ggug------ ---------- 2221 ---ugucggc g--------c cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----u augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agc-uguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gcCU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- acu-uggga- cugc-ugcg- auu--gggg- ---------- ---------- 5701 -------(uu cau---)--- ---------- ---------- ---------- -ucu-cug-- 5761 gccgcg-gug -ggaa-|cuu -guccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Lep.acerva 5903 bp RNA RNA 16-DEC-1996 DEFINITION Leptophytum acervatum.. ACCESSION No information KEYWORDS No information. SOURCE Leptophytum acervatum. ORGANISM Leptophytum acervatum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U62119 LOCUS LAU62119 1723 bp DNA PLN 16-DEC-1996 DEFINITION Leptophytum acervatum nuclear 18S rRNA gene, partial sequence. ACCESSION U62119 NID g1732187 KEYWORDS . SOURCE Leptophytum acervatum. ORGANISM Leptophytum acervatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Leptophytum. REFERENCE 1 (bases 1 to 1723) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1723) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1723 /organism="Leptophytum acervatum" /strain="South Africa" rRNA <1..>1723 /product="18S rRNA" BASE COUNT 434 a 360 c 479 g 448 t 2 others BASE COUNT 434 a 360 c 479 g 448 t 4182 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~U(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-A( ---auu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -AUCC(---- ----uau)GG AU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu a-guuc-cgg augugu--g- cg-c-(gucg u--)gcgcgu acuu------ 1801 ---------- ------cgca gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------c- augcguc-ag augacgcgac 2161 (uuuauu--- ---------- ---------- ---)guugaa cauc------ ---------- 2221 ---uguacgc g-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGN UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUUGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-CGAGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUCGGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCCGA-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc g-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacgu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uacCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uugc-agcg- ggaa-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucugcc-gng -agaa-|cuc -agucgaacc uu-auc-a-u uuag~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lep.ferox 5903 bp RNA RNA 16-DEC-1996 DEFINITION Leptophytum ferox.. ACCESSION No information KEYWORDS No information. SOURCE Leptophytum ferox. ORGANISM Leptophytum ferox. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U62120 LOCUS LFU62120 1717 bp DNA PLN 16-DEC-1996 DEFINITION Leptophytum ferox nuclear 18S rRNA gene, partial sequence. ACCESSION U62120 NID g1732188 KEYWORDS . SOURCE Leptophytum ferox. ORGANISM Leptophytum ferox Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Leptophytum. REFERENCE 1 (bases 1 to 1717) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1717) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1717 /organism="Leptophytum ferox" /strain="South Africa" rRNA <1..>1717 /product="18S rRNA" BASE COUNT 422 a 350 c 464 g 440 t 41 others BASE COUNT 422 a 350 c 464 g 440 t 4227 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~C CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaccuac 301 u>ACACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-A( ---auu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -AUCC(---- ----uau)GG AU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA--NNN N---->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggu a-guuc-cgg gagugu--g- cg-c-(gucg u--)gcgcgu gcuu------ 1801 ---------- ------cgca gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------c- augcguc-ag augacgcgac 2161 (uuuauu--- ---------- ---------- ---)guugaa cauc------ ---------- 2221 ---uguacgc g-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUUGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-CGAGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUCGGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCCGA-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc g-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacgu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uacCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- cugc-agcg- ggaa-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucugcc-gcg -agaa-|cuc -agucgaacc uu-auc-a-u uuag~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lep.foveat 5903 bp RNA RNA 23-NOV-1997 DEFINITION Leptophytum foveatum.. ACCESSION No information KEYWORDS No information. SOURCE Leptophytum foveatum. ORGANISM Leptophytum foveatum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE on nuclear small-subunit rRNA gene sequences A phylogenetic study of the Corallinales (Rhodophyta) based JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF031470 LOCUS AF031470 1664 bp DNA PLN 23-NOV-1997 DEFINITION Leptophytum foveatum 18S ribosomal RNA gene, partial sequence. ACCESSION AF031470 NID g2641189 KEYWORDS . SOURCE Leptophytum foveatum. ORGANISM Leptophytum foveatum Eukaryotae; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Leptophytum. REFERENCE 1 (bases 1 to 1664) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE A phylogenetic study of the Corallinales (Rhodophyta) based on nuclear small-subunit rRNA gene sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1664) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-OCT-1997) Bigelow Laboratory for Ocean Sciences, P.O. Box 475, McKown Point, West Boothbay Harbor, ME 04575, USA FEATURES Location/Qualifiers source 1..1664 /organism="Leptophytum foveatum" /strain="South Africa" /db_xref="taxon:69446" rRNA <1..>1664 /product="18S ribosomal RNA" BASE COUNT 432 a 348 c 459 g 425 t BASE COUNT 432 a 348 c 459 g 425 t 4239 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaccuac 301 u>AUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uac)GG ---CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-guuc-cgg gagugu--g- cg-c-(gucg u--)gcgcgu cguu------ 1801 ---------- ------cgca gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uu uugcguu-ug augaggcagc 2161 (uuuauu--- ---------- ---------- ---)gcugaa cguc------ ---------- 2221 --uauacagc a-------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAAA--A 2461 AUUAAAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUACAU-UAG CAUGGAA|UA -AUUGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-CGAGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g--)------ ---------- ---------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|------ ---------- |---|----- ---|------ -|---(---- 4261 --)------- ---G(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc g-------(u uuua---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----acCU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uugu-agcg- ggaa-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucugcc-acg -aaaa-|cuc -agucgaacc uu-auc-a-u uuag~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Litp.kotsc 5903 bp RNA RNA 16-DEC-1996 DEFINITION Lithophyllum kotschyanum.. ACCESSION No information KEYWORDS No information. SOURCE Lithophyllum kotschyanum. ORGANISM Lithophyllum kotschyanum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U62117 LOCUS LKU62117 1714 bp DNA PLN 16-DEC-1996 DEFINITION Lithophyllum kotschyanum nuclear 18S rRNA gene, partial sequence. ACCESSION U62117 NID g1732189 KEYWORDS . SOURCE Lithophyllum kotschyanum. ORGANISM Lithophyllum kotschyanum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Lithophylloideae; Lithophyllum. REFERENCE 1 (bases 1 to 1714) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1714) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1714 /organism="Lithophyllum kotschyanum" /strain="Fiji" rRNA <1..>1714 /product="18S rRNA" BASE COUNT 432 a 356 c 474 g 448 t 4 others BASE COUNT 432 a 356 c 474 g 448 t 4193 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguua-uuc ---------- -ug-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 guga<----- ---------- ---------- ---------- ---------- -ugauuuuac 301 u>-CACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -AGCC(---- ----uau)GG UU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----UCGAGC -UAAA--CAG C----caU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacauu-ggc a-auuc-cgg gagugu--g- cg-c-(gucg u--)gugcac gcuu------ 1801 ---------- ------ugcg ggga-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- uugcgug-gg augaagcaua 2161 (uuuauu--- ---------- ---------- ---)uaugaa cguc------ ---------- 2221 ----caacgc g-------gc cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUCAAAGUGC UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUGUAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -gcc|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UGG- GAC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUCGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCCGA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg ---uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacgc--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----auaCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCN-N-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-aa cac(gaaa-) gugug----u ccuaau-cuu --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GUU (-UCAUCAU- )AACGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- ccug-ancg- gaa--aaacg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-ugu-- 5761 ucugcu-cgg -gnaa-|cuc -agucgaacc uu-auc-a-u ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Litt.glaci 5903 bp RNA RNA 16-DEC-1996 DEFINITION Lithothamnion glaciale.. ACCESSION No information KEYWORDS No information. SOURCE Lithothamnion glaciale. ORGANISM Lithothamnion glaciale. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60738 LOCUS LGU60738 1729 bp DNA PLN 16-DEC-1996 DEFINITION Lithothamnion glaciale nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60738 NID g1732162 KEYWORDS . SOURCE Lithothamnion glaciale. ORGANISM Lithothamnion glaciale Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Lithothamnion. REFERENCE 1 (bases 1 to 1729) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1729) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1729 /organism="Lithothamnion glaciale" /strain="Labrador, Canada" rRNA <1..>1729 /product="18S ribosomal RNA" BASE COUNT 434 a 362 c 487 g 446 t BASE COUNT 434 a 362 c 487 g 446 t 4174 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-aucgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaacuuac 301 u>AUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCG-G( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu a-guuc-cgg aucugu--g- cg-c-(gucg u--)gcgcgc aguu------ 1801 ---------- ------ugca gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------c- augcguc-gg augaggcgac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 ---cguacgc a-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uuggu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc g-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cucCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccc-uggga- uugc-ugcg- aag--ggacg ---------- ---------- 5701 -------(uu c-----)--- ---------- ---------- ---------- cgcu-ugc-- 5761 ucugug-gcg -agaa-|cuc -ggucgaacc uu-auc-a-u uuag~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Litt.tophi 5903 bp RNA RNA 16-DEC-1996 DEFINITION Lithothamnion tophiforme.. ACCESSION No information KEYWORDS No information. SOURCE Lithothamnion tophiforme. ORGANISM Lithothamnion tophiforme. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60739 LOCUS LTU60739 1683 bp DNA PLN 16-DEC-1996 DEFINITION Lithothamnion tophiforme nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60739 NID g1732163 KEYWORDS . SOURCE Lithothamnion tophiforme. ORGANISM Lithothamnion tophiforme Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Lithothamnion. REFERENCE 1 (bases 1 to 1683) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1683) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1683 /organism="Lithothamnion tophiforme" /strain="Labrador, Canada" rRNA <1..>1683 /product="18S ribosomal RNA" BASE COUNT 427 a 347 c 474 g 433 t 2 others BASE COUNT 427 a 347 c 474 g 433 t 4222 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~U|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaacuuac 301 u>AUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu a-guuc-cgg aucugu--g- cg-c-(gucg u--)gcgcgc aguu------ 1801 ---------- ------ugca gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------c- augcguc-gg augaggcgac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 ---cguacgc a-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uuggu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCNGG-AAG- A-CAAANA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc g-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cucCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccc-uggga- uugc-ugcg- aag--ggacg ---------- ---------- 5701 -------(uu c-----)--- ---------- ---------- ---------- cgcu-ugc-- 5761 ucugu~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Litx.asper 5903 bp RNA RNA 16-DEC-1996 DEFINITION Lithothrix aspergillum.. ACCESSION No information KEYWORDS No information. SOURCE Lithothrix aspergillum. ORGANISM Lithothrix aspergillum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61249 LOCUS LAU61249 1721 bp DNA PLN 16-DEC-1996 DEFINITION Lithothrix aspergillum nuclear 18S rRNA gene, partial sequence. ACCESSION U61249 NID g1732177 KEYWORDS . SOURCE Lithothrix aspergillum. ORGANISM Lithothrix aspergillum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Amphiroideae; Lithothrix. REFERENCE 1 (bases 1 to 1721) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1721) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1721 /organism="Lithothrix aspergillum" /strain="Laguna Beach, Orange Co., CA, USA" rRNA <1..>1721 /product="18S rRNA" BASE COUNT 433 a 338 c 471 g 456 t 23 others BASE COUNT 433 a 338 c 471 g 456 t 4205 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguua-uuc ---------- -ug-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 gaga<----- ---------- ---------- ---------- ---------- -ugauuuuac 301 u>-CUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -nnnccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC AAAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUGGGGG- -AACC(---- ----uau)GG UU-CU-UCCA A-UUGGAAU- 1501 ------GAGA ----UCGAGC -UAAA--AAG C-----AA-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacauu-ggu a-guuc-cgg gagugu--g- cg-c-(gucg u--)gugcac guuu------ 1801 ---------- ------g-c- ggga-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- uugcgug--g gaugaagcau 2161 (uuaacu--- ---------- ---------- ---)gucgaa cguc------ ---------- 2221 ---ccuccgc a-------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGAA--A 2461 AUCAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUGCAU-UAG CAUGGAA|UA -ANAGAA-UA -GGA-----c 2581 -ucg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gucC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UGG- AAC-NGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUNGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCNNN-AAG- A-CAAACU-G CUGC(-GAAA )--G-|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----a acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGag g--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agua------ ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GGG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUAGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-aa cac(gaaa-) gugu-----g ccuaau-cuu --uaaa]--- ---------- 5461 -------ucu gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA GG-CGC-GUG (-UCAUCAU- )CACGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uuga-gnug- gaaa-aagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-ugu-- 5761 ucuguu-uug -agaa-|cuc -agucgaacc uu-auc-a-u uuag~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Lom.austra 5903 bp RNA RNA 26-JUL-1996 DEFINITION Lomentaria australis.. ACCESSION No information KEYWORDS No information. SOURCE Lomentaria australis. ORGANISM Lomentaria australis. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33134 LOCUS LAU33134 1762 bp DNA PLN 26-JUL-1996 DEFINITION Lomentaria australis 18S ribosomal RNA gene, complete sequence. ACCESSION U33134 NID g1463114 KEYWORDS . SOURCE Lomentaria australis. ORGANISM Lomentaria australis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodymeniales; Lomentariaceae; Lomentaria. REFERENCE 1 (bases 1 to 1762) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1762) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1762 /organism="Lomentaria australis" /note="isolate G0090" rRNA 1..1762 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1735..1762) /note="3' PCR primer" BASE COUNT 444 a 363 c 486 g 469 t BASE COUNT 444 a 363 c 486 g 469 t 4141 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaauauu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augc<----- ---------- ---------- ---------- ---------- ----uauuac 301 u>UCACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGGUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -AAUCCG-A( ---aau--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -ACCC(---- ----aau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAU C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggc g-guug-uuu ugcguc--a- uc-c-(ucac ---)ggaugu cugua----- 1801 ---------- ------a-u- ccgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggggau--- guagugguuc 2161 (uuuacu--- ---------- ---------- ---)gaauua cugc------ ---------- 2221 ----guuucc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUCUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cu-g------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucuucuaUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- AAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --CGGGGGCA UU|--UGUAU UCCAGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CACACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg gac-g-g-gg cu--(---gu -uuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gu-ucg-g ca-uccc--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 G-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGAaa u--cauuaca --------(c uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------ug ugguagug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aucuu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -C-C(----- 5041 --GUCUA-)G GCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u ccuaac-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGAU-G-GGG AUUGAGGCU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA GG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-ugga- uggc-cugu- ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- -aca-gac-- 5761 ugucug-guc -uaaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Lom.bailey 5903 bp RNA RNA 11-JAN-191 DEFINITION Lomentaria baileyana. ACCESSION No information KEYWORDS No information. SOURCE Lomentaria baileyana. ORGANISM Lomentaria baileyana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26194 LOCUS LMTFRA 1761 bp ds-DNA PLN 30-JUN-1994 DEFINITION Lomentaria baileyanam DNA fragment. ACCESSION L26194 KEYWORDS PCR amplified. SOURCE Lomentaria baileyana DNA. ORGANISM Lomentaria baileyana Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Rhodymeniales; Lomentariaceae. REFERENCE 1 (bases 1 to 1761) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507276 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1735..1761 /standard_name="PCR primer" /note="putative" source 1..1761 /organism="Lomentaria baileyana" /sequenced_mol="DNA" BASE COUNT 448 a 361 c 484 g 468 t BASE COUNT 448 a 361 c 484 g 468 t 4142 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaauauu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augc<----- ---------- ---------- ---------- ---------- ----uauuac 301 u>UUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGGUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -AAUCCG-A( ---aau--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -ACCC(---- ----aau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAU C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggc g-guug-uuu ugcguc--a- uc-c-(ucac ---)ggaugg cugug----- 1801 ---------- ------a-u- ccgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggu--- guagugguuc 2161 (uuuacu--- ---------- ---------- ---)gaauua cugc------ ---------- 2221 ----auuucc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUCUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gUUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- AAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --CGGGGGCA UU|--UGUAU UCCAGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg gac-g-g-gg cu--(----u uauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ucg-g ca-uccc--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 G-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCU--GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGAaa u--cauuac- --------(a cuuu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu gguag-ug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aucuu- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -C-C(----- 5041 --GUCUA-)G GCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u ccuaac-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGCU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA GG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -CGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-ugga- uggc-cugu- ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- -aca-gac-- 5761 uaucug-guc -uaaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CAUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Masc.stell 5903 bp RNA RNA 11-JAN-191 DEFINITION Mastocarpus stellatus. ACCESSION No information KEYWORDS No information. SOURCE Mastocarpus stellatus. ORGANISM Mastocarpus stellatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26195 LOCUS MSSFRA 1776 bp ds-DNA PLN 30-JUN-1994 DEFINITION Mastocarpus stellatus DNA fragment. ACCESSION L26195 KEYWORDS PCR amplified. SOURCE Mastocarpus stellatus DNA. ORGANISM Mastocarpus stellatus Eukaryota; Protista; Rhodophyta; Rhodophyceae; Florideophycideae; Gigartinales; Petrocelidaceae. REFERENCE 1 (bases 1 to 1776) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 507283 FEATURES Location/Qualifiers primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1749..1776 /standard_name="PCR primer" /note="putative" source 1..1776 /organism="Mastocarpus stellatus" /sequenced_mol="DNA" BASE COUNT 437 a 374 c 518 g 447 t ORIGIN BASE COUNT 437 a 374 c 518 g 447 t 4127 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-UGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaaugac 301 u>ACAUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggca-auc cagggc--g- uc-u-(ucac ---)ggacgg aucug----- 1801 ---------- ------g-a- gugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- ccagugucgc 2161 (uucacu--- ---------- ---------- ---)gcguca uugu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGGA|UA -AUAGAA-UA -GGA-----c 2581 cugu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- auCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggu-a-g-ga cu--(---gu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-ac-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg a--caauacc g-------(u uuuu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu auugc--c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucgC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- ugga-cuaug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 cgucug-gcc -ccaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAAU~~~~ ~~~~~~~~|| ||| // LOCUS Masp.canic 5903 bp RNA RNA 16-DEC-1996 DEFINITION Mastophoropsis caniculata.. ACCESSION No information KEYWORDS No information. SOURCE Mastophoropsis caniculata. ORGANISM Mastophoropsis caniculata. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U62118 LOCUS MCU62118 1540 bp DNA PLN 16-DEC-1996 DEFINITION Mastophoropsis caniculata nuclear 18S rRNA gene, partial sequence. ACCESSION U62118 NID g1732190 KEYWORDS . SOURCE Mastophoropsis caniculata. ORGANISM Mastophoropsis caniculata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Mastophoropsis. REFERENCE 1 (bases 1 to 1540) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1540) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1540 /organism="Mastophoropsis caniculata" /strain="Beachport, South Australia" rRNA <1..>1540 /product="18S rRNA" BASE COUNT 374 a 289 c 391 g 369 t 117 others BASE COUNT 374 a 289 c 391 g 369 t 4480 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaccuac 301 u>AUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUCA A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aau--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu a-guuc-cgg gagugu--g- cg-c-(gucg u--)gcgcgu gcuucg---- 1801 ---------- ------c-a- gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gaugcgucag augaggcgac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 ccuaucgca- --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUACAU-UAG CAUGGAA|UA -AUUGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-CGAGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUCAGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCUCA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga gu--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-N- 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uug-nn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNNUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAgggg c--uacuacc --------(u uuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gg uaguacgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----caccc- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U C~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (-~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Mei.spetsb 5903 bp RNA RNA 11-JAN-191 DEFINITION Meiodiscus spetsbergensis. ACCESSION No information KEYWORDS No information. SOURCE Meiodiscus spetsbergensis. ORGANISM Meiodiscus spetsbergensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23814 LOCUS MSU23814 1771 bp DNA PLN 06-SEP-1995 DEFINITION Meiodiscus spetsbergensis 18S ribosomal RNA gene, complete sequence. ACCESSION U23814 KEYWORDS . SOURCE Meiodiscus spetsbergensis. ORGANISM Meiodiscus spetsbergensis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Palmariales; Rhodophysemataceae; Meiodiscus. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975282 FEATURES Location/Qualifiers source 1..1771 /isolate="culture GWS9124" /organism="Meiodiscus spetsbergensis" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1744..1771) /note="3' end PCR primer" BASE COUNT 425 a 385 c 520 g 441 t ORIGIN BASE COUNT 425 a 385 c 520 g 441 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-c-(guaa u--)gugugc ggcgc----- 1801 ---------- ------u-g- gggc-g---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- guguuguggc 2161 (uuuacu--- ---------- ---------- ---)gucgcg gcgc------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ugUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGCGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGC|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---AUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcuguuc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gucC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-cgcg- guug-aggcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcc-cug-- 5761 gccgca-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Mel.obtusa 5903 bp RNA RNA 31-JAN-1994 DEFINITION Melanthalia obtusata. ACCESSION No information KEYWORDS No information. SOURCE Melanthalia obtusata. ORGANISM Melanthalia obtusata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26215 LOCUS MLLFRB 1770 bp DNA PLN 31-JAN-1994 DEFINITION Melanthalia obtusata DNA fragment. ACCESSION L26215 NID g431104 KEYWORDS . SOURCE Melanthalia obtusata DNA. ORGANISM Melanthalia obtusata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gracilariales; Gracilariaceae; Melanthalia. REFERENCE 1 (bases 1 to 1770) AUTHORS Bird,C.J., Rice,E.L., Murphy,C.A. and Ragan,M.A. TITLE Phylogenetic relationships in the Gracilariales (Rhodophyta) as determined by 18S rDNA sequences JOURNAL Phycologia 31, 510-522 (1992) FEATURES Location/Qualifiers source 1..1770 /organism="Melanthalia obtusata" /db_xref="taxon:31474" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 454 a 366 c 500 g 450 t BASE COUNT 454 a 366 c 500 g 450 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----uaaucg 241 guga<----- ---------- ---------- ---------- ---------- ---uaaacgc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUGG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-uucg-acu ugaguc--g- uc-c-(gcga ---)ggacgc ucuca----- 1801 ---------- ------g-g- uugg-g---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggagu--- cuggugguuc 2161 (uuaauu--- ---------- ---------- ---)ggaucg cuag------ ---------- 2221 ----gcugcc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-C-UGA AUACAU-UAG CAUGGGA|UA -AUAGAA-UA -GGA-----c 2581 ccga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UUG- AAU-CGGGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCGACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGA-AAG- A-CGAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg gau-a-a-ga cu--(---ga uauau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u u-au-ccg-g ca-uccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-CAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg g--cguuacu a-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgagac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGA----- ---------- 5281 ---(------ ----)[ucaa cgggucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGAU-G-GGG AUCGACGGU( UGCAAUUU)U CCGUCGUC-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gagc-uagu- ugaa-cug-- ---------- ---------- 5701 -------(uu uau---)--- ---------- ---------- ---------- -cca-gau-- 5761 cuucug-gcu -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AG--UCA--- 5881 --GAAUU~~~ ~~~~~~~~|| ||| // LOCUS Mes.engelh 5903 bp RNA RNA 16-DEC-1996 DEFINITION Mesophyllum engelhartii.. ACCESSION No information KEYWORDS No information. SOURCE Mesophyllum engelhartii. ORGANISM Mesophyllum engelhartii. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61256 LOCUS MEU61256 1693 bp DNA PLN 16-DEC-1996 DEFINITION Mesophyllum engelhartii nuclear 18S rRNA gene, partial sequence. ACCESSION U61256 NID g1732178 KEYWORDS . SOURCE Mesophyllum engelhartii. ORGANISM Mesophyllum engelhartii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Mesophyllum. REFERENCE 1 (bases 1 to 1693) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1693) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1693 /organism="Mesophyllum engelhartii" /strain="South Africa" rRNA <1..>1693 /product="18S rRNA" BASE COUNT 417 a 342 c 453 g 434 t 47 others BASE COUNT 417 a 342 c 453 g 434 t 4257 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaccuac 301 u>AUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uac)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuu-ggc a-guuc-cgg gagugu--g- cg-c-(gucg u--)gcgcgu gcuucg---- 1801 ---------- ------c-a- gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc uugcgug-ug augaagcaac 2161 (uuuauu--- ---------- ---------- ---)guuga- cguc------ ---------- 2221 --ucuucgca --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAAA--A 2461 AUUAAAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUACAU-UAG CAUGGAA|UA -AUUGAA-UA -GGA-----c 2581 uug------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gucu--uauu 2821 -uu-g-NNNN -NN-NN---- ------NNN- NNN-NNNNNN N--NNNNNNN NN--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 --NNNNNNNN UU|--UGUAU UCCGGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca--ccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga gac)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----accU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ua cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uugu-anug- gaaa-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucug~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Mes.erubes 5903 bp RNA RNA 16-DEC-1996 DEFINITION Mesophyllum erubescens.. ACCESSION No information KEYWORDS No information. SOURCE Mesophyllum erubescens. ORGANISM Mesophyllum erubescens. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61257 LOCUS MEU61257 1666 bp DNA PLN 16-DEC-1996 DEFINITION Mesophyllum erubescens nuclear 18S rRNA gene, partial sequence. ACCESSION U61257 NID g1732179 KEYWORDS . SOURCE Mesophyllum erubescens. ORGANISM Mesophyllum erubescens Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Mesophyllum. REFERENCE 1 (bases 1 to 1666) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1666) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1666 /organism="Mesophyllum erubescens" /strain="Brazil" rRNA <1..>1666 /product="18S rRNA" BASE COUNT 419 a 337 c 450 g 417 t 43 others BASE COUNT 419 a 337 c 450 g 417 t 4280 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ua-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaccuac 301 u>ACACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu a-guuc-cgg gagugu--g- cg-c-(gucg u--)gcgcgu gcuucg---- 1801 ---------- ------c-a- gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugg- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc augugcc-gg augaggcaac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 --ugugugca --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAAA--A 2461 AUUAAAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-A-UGA AUACAU-UAG CAUGGAA|UA -AUUGAA-UA -GGA-----c 2581 uug------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gucu--UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-CGAGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACUAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[agg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|-GA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uauuacc g-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----accU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cgc(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUC)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Met.chara 5903 bp RNA RNA 16-DEC-1996 DEFINITION Metagoniolithon chara.. ACCESSION No information KEYWORDS No information. SOURCE Metagoniolithon chara. ORGANISM Metagoniolithon chara. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60743 LOCUS MCU60743 1714 bp DNA PLN 16-DEC-1996 DEFINITION Metagoniolithon chara nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60743 NID g1732164 KEYWORDS . SOURCE Metagoniolithon chara. ORGANISM Metagoniolithon chara Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Metagoniolithoideae; Metagoniolithon. REFERENCE 1 (bases 1 to 1714) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1714) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1714 /organism="Metagoniolithon chara" /strain="Pt. Lonsdale, Victoria, Australia" rRNA <1..>1714 /product="18S ribosomal RNA" BASE COUNT 442 a 346 c 463 g 448 t 15 others BASE COUNT 442 a 346 c 463 g 448 t 4204 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~C CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguua-uuc ---------- -ug-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucaucg 241 guga<----- ---------- ---------- ---------- ---------- -ugaguuuac 301 u>-CACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -AUCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-guuc-cga gaguga--g- ca-c-(gucg u--)gugcac acucug---- 1801 ---------- ------c-a- ggga-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------u uugcguu-ag augaggcacg 2161 (uuuauu--- ---------- ---------- ---)cgugaa cguc------ ---------- 2221 --gacacgcg --------gc cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUCAGAGUGC UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUGUAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uuggu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --UC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UGG- GAC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCAGGCG-CU -AGAG(GU-G AAA---)CUC U-UAGA-U-U 3061 GCUGA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggu-gag-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[aga-aua 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauagg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|AUUCG- U|GCA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGUGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacgcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----auacC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-U -G-U(----- 5041 --GUCUA-)A UACA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cgc(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- ucug-agug- gaaa-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucugca-ugg -agaa-|cuc -agucgaacc uu-auc-a-u uuag~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Met.radiat 5903 bp RNA RNA 16-DEC-1996 DEFINITION Metagoniolithon radiatum.. ACCESSION No information KEYWORDS No information. SOURCE Metagoniolithon radiatum. ORGANISM Metagoniolithon radiatum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61250 LOCUS MRU61250 1685 bp DNA PLN 16-DEC-1996 DEFINITION Metagoniolithon radiatum nuclear 18S rRNA gene, partial sequence. ACCESSION U61250 NID g1732180 KEYWORDS . SOURCE Metagoniolithon radiatum. ORGANISM Metagoniolithon radiatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Metagoniolithoideae; Metagoniolithon. REFERENCE 1 (bases 1 to 1685) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1685) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1685 /organism="Metagoniolithon radiatum" /strain="Beachport, South Australia" rRNA <1..>1685 /product="18S rRNA" BASE COUNT 385 a 321 c 416 g 394 t 169 others BASE COUNT 385 a 321 c 416 g 394 t 4387 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~C CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguua-uuc ---------- -ug-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucaucg 241 guga<----- ---------- ---------- ---------- ---------- -ugaguuuac 301 u>-CACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-N AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-GCCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGC -|A|GUGACA AUUA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------NU CAAUAGGGG- -AUCC(---- ----aua)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGC ----ACAAGC -UAAA--CAG C-----UU-A U--NN-NNNN N---->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-guuc-cgg gaguga--g- ca-c-(gucg u--)gugcac gcucug---- 1801 ---------- ------c-a- ggga-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------u uugcguc-ag augaggcacg 2161 (uuaauu--- ---------- ---------- ---)cgugaa cguc------ ---------- 2221 --uguacgcg --------gc cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUCAGAGUGC UC-AA-AG-C AGG------- ---------- ---------- ---------- 2521 --------NN NNNN-N-NNN NNNNNN-NNN NNNNNNN|NN -NNNNNN-NN -NNN-----n 2581 nnnn------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- nNNN|-NNNN 2821 -NN-NNNNNN -NN-NN---- ------NNN- NNN-NNNNNN N--NNNNNNN NN--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 --NNNNNNNN NN|--NNNNN NNNNNNN-NN -NNAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggu-gag-ga au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[aga-aua 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauagg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|AUUCG- U|GCA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGUGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacgcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuacC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-U -G-U(----- 5041 --GUCUA-)A CACA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cgc(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- ucug-agcg- gaaa-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucugca-ugg ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Met.stelli 5903 bp RNA RNA 16-DEC-1996 DEFINITION Metagoniolithon stelliferum.. ACCESSION No information KEYWORDS No information. SOURCE Metagoniolithon stelliferum. ORGANISM Metagoniolithon stelliferum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61251 LOCUS MSU61251 1622 bp DNA PLN 16-DEC-1996 DEFINITION Metagoniolithon stelliferum nuclear 18S rRNA gene, partial sequence. ACCESSION U61251 NID g1732181 KEYWORDS . SOURCE Metagoniolithon stelliferum. ORGANISM Metagoniolithon stelliferum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Metagoniolithoideae; Metagoniolithon. REFERENCE 1 (bases 1 to 1622) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1622) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1622 /organism="Metagoniolithon stelliferum" /strain="Portsea, Victoria, Australia" rRNA <1..>1622 /product="18S rRNA" BASE COUNT 413 a 325 c 431 g 404 t 49 others BASE COUNT 413 a 325 c 431 g 404 t 4330 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguua-uuc ---------- -ug-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucaucg 241 guga<----- ---------- ---------- ---------- ---------- -ugaguuuac 301 u>-CACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-GCCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGC -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -AUCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-guuc-cgg gaguga--g- ca-c-(gucg u--)gugcac gcucug---- 1801 ---------- ------c-a- ggga-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------u uugcguc-ag augaggcacg 2161 (uuaacu--- ---------- ---------- ---)cgugaa cguc------ ---------- 2221 --uguacgcg --------gc cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUCAGAGUGC UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUGUAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uug------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gUUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UGG- GAC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUCAGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCUGA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggu-gag-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ccg-g ca-cccu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[aga-aua 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacgcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuacC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-U -G-U(----- 5041 --GUCUA-)A CACA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguua--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cgc(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCG~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Myc.carnos 5903 bp RNA RNA 26-JUL-1996 DEFINITION Mychodea carnosa.. ACCESSION No information KEYWORDS No information. SOURCE Mychodea carnosa. ORGANISM Mychodea carnosa. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33135 LOCUS MCU33135 1774 bp DNA PLN 26-JUL-1996 DEFINITION Mychodea carnosa 18S ribosomal RNA gene, complete sequence. ACCESSION U33135 NID g1463115 KEYWORDS . SOURCE Mychodea carnosa. ORGANISM Mychodea carnosa Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Halymeniaceae; Mychodea. REFERENCE 1 (bases 1 to 1774) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1774) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1774 /organism="Mychodea carnosa" /note="isolate G0123" rRNA 1..1774 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1747..1774) /note="3' PCR primer" BASE COUNT 427 a 377 c 528 g 442 t BASE COUNT 427 a 377 c 528 g 442 t 4129 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacuac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----acc)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggcg-acc uggggc--g- uc-c-(uuac ---)ggacgg aucca----- 1801 ---------- ------g-g- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccaguggagc 2161 (uucacu--- ---------- ---------- ---)gcguca cugu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cu-g------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u cucc|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-UGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-a-g-ga cu--(---uu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gacuacu --------(c uugu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-ugggg- ggga-aaga- ugga-uugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-aac-- 5761 cgucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Nem.helmin 5903 bp RNA RNA 30-JUN-1994 DEFINITION Nemalion helminthoides. ACCESSION No information KEYWORDS No information. SOURCE Nemalion helminthoides. ORGANISM Nemalion helminthoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26196 LOCUS NMLFRA 1769 bp DNA PLN 30-JUN-1994 DEFINITION Nemalion helminthoides DNA fragment. ACCESSION L26196 NID g507786 KEYWORDS PCR amplified. SOURCE Nemalion helminthoides DNA. ORGANISM Nemalion helminthoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Nemaliales; Liagoraceae; Nemalion. REFERENCE 1 (bases 1 to 1769) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1769 /organism="Nemalion helminthoides" /db_xref="taxon:35200" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1769 /standard_name="PCR primer" /note="putative" BASE COUNT 437 a 379 c 508 g 445 t BASE COUNT 437 a 379 c 508 g 445 t 4134 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|guuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUUCU-G( ---aca--)C 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- ug-c-(gugg u--)gcaugu ggcgc----- 1801 ---------- ------u-g- gggc-a---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- aggcggc--- auuucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcuu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --GGgau-cg ggc-g-g-gc au--(----- uacg-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAgggg c--cguuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcugcuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gcuC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA GGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGCA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gaga-- auu-uggga- uugu-ugcg- aucg-gggcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcg-cug-- 5761 gccgca-aca -aaaa-|cuu -auucgaacc au-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GA~~~~~~ ~~~~~~~~|| ||| // LOCUS Niz.austra 5903 bp RNA RNA 11-JAN-191 DEFINITION Nizymenia australis. ACCESSION No information KEYWORDS No information. SOURCE Nizymenia australis. ORGANISM Nizymenia australis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09616 LOCUS NAU09616 1775 bp DNA PLN 07-DEC-1994 DEFINITION Nizymenia australis small-subunit rRNA gene. ACCESSION U09616 KEYWORDS ribosomal RNA small subunit. SOURCE Nizymenia australis. ORGANISM Nizymenia australis Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Nizymeniaceae; Nizymenia. REFERENCE 1 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1775) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595308 FEATURES Location/Qualifiers source 1..1775 /organism="Nizymenia australis" /isolate="VOUCHER GWS-G0004" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1775 /product="small-subunit rRNA" primer_bind complement(1748..1775) /note="PCR 3' end primer" BASE COUNT 423 a 384 c 540 g 428 t ORIGIN BASE COUNT 423 a 384 c 540 g 428 t 4128 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacgac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggcg-acc uggggc--g- uc-c-(ucac ---)ggacgg gucca----- 1801 ---------- ------g-g- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccgguggagc 2161 (uucacu--- ---------- ---------- ---)gcguca ccgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguc----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-g-ga cu--(---gu aauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--ggcuacc g-------(a uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcggggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaaa-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUA)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-ugggg- gggc-uaga- cgga-cugug ---------- ---------- 5701 -------(cu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 ugucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Not.nodosu 5903 bp RNA RNA 11-JAN-191 DEFINITION Nothocladus nodosus. ACCESSION No information KEYWORDS No information. SOURCE Nothocladus nodosus. ORGANISM Nothocladus nodosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23815 LOCUS NNU23815 1765 bp DNA PLN 06-SEP-1995 DEFINITION Nothocladus nodosus 18S ribosomal RNA gene, complete sequence. ACCESSION U23815 KEYWORDS . SOURCE Nothocladus nodosus. ORGANISM Nothocladus nodosus Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Nothocladus. REFERENCE 1 (bases 1 to 1765) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975283 FEATURES Location/Qualifiers source 1..1765 /isolate="field sample, Armstrong Creek" /organism="Nothocladus nodosus" rRNA 1..1765 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1738..1765) /note="3' end PCR primer" BASE COUNT 428 a 385 c 516 g 436 t ORIGIN BASE COUNT 428 a 385 c 516 g 436 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagu-a-auu ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GCGU(---- ---uucu)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-cggu-cca ggcugu--g- cg-c-(guag u--)gcgugc ggcgu----- 1801 ---------- --------g- ggac-g---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg ggug------ ---------- 2221 ---ugccggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----u augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agc-uguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- acu-uggga- uugc-ugcg- auug-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgcg-gug -agaa-|cuu -guccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Oni.pristo 5903 bp RNA RNA 21-SEP-1998 DEFINITION Onikusa pristoides.. ACCESSION No information KEYWORDS No information. SOURCE Onikusa pristoides. ORGANISM Onikusa pristoides. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60353 LOCUS OPU60353 1703 bp DNA PLN 21-SEP-1998 DEFINITION Onikusa pristoides 18S ribosomal RNA gene, partial sequence. ACCESSION U60353 NID g1732134 KEYWORDS . SOURCE Onikusa pristoides. ORGANISM Onikusa pristoides Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Onikusa. REFERENCE 1 (bases 1 to 1703) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1703) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1703 /organism="Onikusa pristoides" /strain="False Bay, Cape Peninsula, South Africa" /db_xref="taxon:28858" rRNA <1..>1703 /product="18S ribosomal RNA" BASE COUNT 390 a 346 c 475 g 417 t 75 others BASE COUNT 390 a 346 c 475 g 417 t 4275 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAAA 1561 AGNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|NNNNNN 1621 N-NNNNNN|N NNNNN--NNN NNNNN-NNN| NUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuagcggugc 2161 (uuuauu--- ---------- ---------- ---)gccuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-g-cg cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-nncu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGN NN--NN-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA --UG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gccuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- caga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 uaucug-gcc -caaa-|cuu -ggucaaacc uu-auc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pal.palmat 5903 bp RNA RNA 11-JAN-191 DEFINITION Palmaria palmata. ACCESSION No information KEYWORDS No information. SOURCE Palmaria palmata. ORGANISM Palmaria palmata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14142 ID PP18SRRNG standard; DNA; PLN; 1771 BP. XX AC Z14142; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE P.palmata gene for 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Palmaria palmata OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Palmariales; Palmariaceae. XX RN [1] RP 1-1771 RA Bird C.J., Murphy C.A., Rice E.L., Ragan M.A.; RT "The 18S rRNA gene sequences of four commercially important RT seaweeds"; RL Unpublished. XX RN [2] RP 1-1771 RA Ragan M.A.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL Ragan M. A., NRC Institute for Marine Biosciences, 1411 Oxford St, RL Halifax, Nova Scotia, Canada, B3H 3Z1 XX CC *source: is_macronuclear=N; CC *source: is_proviral=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1771 FT /product="18S ribosomal RNA" FT misc_feature 1..22 FT /note= "PCR_primer" /citation= ([1]) FT misc_feature 1745..1771 FT /note= "PCR_primer" /citation= ([1]) XX SQ Sequence 1771 BP; 428 A; 385 C; 518 G; 440 T; 0 other; BASE COUNT 428 a 385 c 518 g 440 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A G-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-c-(guaa u--)gcgugc ggcgc----- 1801 ---------- ------u-g- gggc-g---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcguuguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----C 2581 uUGGUuu--- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGC|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---AUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-a-g-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcuguuc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-cgcg- guug-aggcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcc-cug-- 5761 gccgca-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGA-CA--- 5881 --GAAU~~~~ ~~~~~~~~|| ||| // LOCUS Par.catena 5903 bp RNA RNA 05-NOV-1997 DEFINITION Paralemanea catenata.. ACCESSION No information KEYWORDS No information. SOURCE Paralemanea catenata. ORGANISM Paralemanea catenata. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026052 LOCUS AF026052 1765 bp DNA PLN 05-NOV-1997 DEFINITION Paralemanea catenata 18S ribosomal RNA gene, complete sequence. ACCESSION AF026052 NID g2564935 KEYWORDS . SOURCE Paralemanea catenata. ORGANISM Paralemanea catenata Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Lemaneaceae; Paralemanea. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Paralemanea catenata" /db_xref="taxon:67898" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 426 a 379 c 520 g 440 t BASE COUNT 426 a 379 c 520 g 440 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagu-a-auu ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-ccg ggcugu--g- cg-c-(guaa u--)gcgugu ggcg------ 1801 ---------- ------c-g- gagc-g---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uuuacu--- ---------- ---------- ---)guugcg ggug------ ---------- 2221 ---ugucggc g--------c cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg gac-g-g-gc au--(----u augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcuguc--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- acu-uggga- cugc-ugcg- auug-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgcg-gug -ggaa-|cuu -guccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Pha.pepero 5903 bp RNA RNA 11-JAN-191 DEFINITION Phacelocarpus peperocarpos. ACCESSION No information KEYWORDS No information. SOURCE Phacelocarpus peperocarpos. ORGANISM Phacelocarpus peperocarpos. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09617 LOCUS PPU09617 1776 bp DNA PLN 07-DEC-1994 DEFINITION Phacelocarpus peperocarpos small-subunit rRNA gene. ACCESSION U09617 KEYWORDS ribosomal RNA small subunit. SOURCE Phacelocarpus peperocarpos. ORGANISM Phacelocarpus peperocarpos Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Phacelocarpaceae; Phacelocarpus. REFERENCE 1 (bases 1 to 1776) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1776) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595309 FEATURES Location/Qualifiers source 1..1776 /organism="Phacelocarpus peperocarpos" /isolate="VOUCHER GWS-G0005" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1776 /product="small-subunit rRNA" primer_bind complement(1749..1776) /note="PCR 3' end primer" BASE COUNT 425 a 386 c 538 g 427 t ORIGIN BASE COUNT 425 a 386 c 538 g 427 t 4127 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacgac 301 u>ACUUGG-A UACCCGUAG( -UAAAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggcg-acc uggggc--g- uc-c-(ucac ---)ggacgg gucca----- 1801 ---------- ------g-g- gcgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccgguggagc 2161 (uucacu--- ---------- ---------- ---)gcguca ccgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguc----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-g-ga cu--(---gu aauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--ggcuacc g-------(c uuc----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaaa-) gcacu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUA)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-ugggg- gggc-ugga- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 ugucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Phyc.ruben 5903 bp RNA RNA 30-JUN-1994 DEFINITION Phycodrys rubens. ACCESSION No information KEYWORDS No information. SOURCE Phycodrys rubens. ORGANISM Phycodrys rubens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26198 LOCUS PDRFRA 1770 bp DNA PLN 30-JUN-1994 DEFINITION Phycodrys rubens DNA fragment. ACCESSION L26198 NID g507787 KEYWORDS PCR amplified. SOURCE Phycodrys rubens DNA. ORGANISM Phycodrys rubens Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Delesseriaceae; Phycodrys. REFERENCE 1 (bases 1 to 1770) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1770 /organism="Phycodrys rubens" /db_xref="taxon:35161" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1744..1770 /standard_name="PCR primer" /note="putative" BASE COUNT 445 a 363 c 499 g 463 t BASE COUNT 445 a 363 c 499 g 463 t 4133 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGC-CA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-cua ---------- -aa-a-uauc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagu- uau-aguu-- ----ucuucg 241 gggg<----- ---------- ---------- ---------- ---------- ----uaauac 301 u>ACUCGG-A UAACCGCAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -accccguuc -aa|auuucu ga|--CCU-A UCA--ACUAU --GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGGGG- -GCCC(---- ----gau)GG GC-UU-CCUA A-UUGGAAU- 1501 ------GAGA ----ACAAUG -UAAA--CAU C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 uauuuu-ggc a-gcug-ucg uagaau--g- uc-c-(gcaa ---)ggauug uuuug----- 1801 ---------- ------c--g ucgg-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cuaguggugc 2161 (uuuauu--- ---------- ---------- ---)gccucg cuag------ ---------- 2221 ----guugcu --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AAGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCU|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAA- GUU-CAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACUAUGAG GAC|CG|--- 3421 --gggau-cg gac-g-u-gg c---(----- auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggu-a c-gu-ucg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUA-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uugu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 aauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGCg c--uauuacc --------(u uuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu aguaagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----cagC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------A CCUAGACG]- --|------- ---------- GACU-GCA-G -G-C(----- 5041 --GUCUA-)G UCUG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ag ugc(gaaa-) gcaug----a ccaaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGACGGU( UGCAAUUU)U CCGUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-ugga- cgga-uugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-guu-- 5761 uguuug-gcu -uaaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Phym.laevi 5903 bp RNA RNA 16-DEC-1996 DEFINITION Phymatolithon laevigatum.. ACCESSION No information KEYWORDS No information. SOURCE Phymatolithon laevigatum. ORGANISM Phymatolithon laevigatum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60740 LOCUS PLU60740 1691 bp DNA PLN 16-DEC-1996 DEFINITION Phymatolithon laevigatum nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60740 NID g1732165 KEYWORDS . SOURCE Phymatolithon laevigatum. ORGANISM Phymatolithon laevigatum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Phymatolithon. REFERENCE 1 (bases 1 to 1691) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1691) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1691 /organism="Phymatolithon laevigatum" /strain="Kimmeridge, Dorset, UK" rRNA <1..>1691 /product="18S ribosomal RNA" BASE COUNT 424 a 346 c 477 g 437 t 7 others BASE COUNT 424 a 346 c 477 g 437 t 4219 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaacuac 301 u>AUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -AUCC(---- ----uac)GG AU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu a-guuc-cgg augugu--g- ca-c-(gucg u--)gugcgc acuuug---- 1801 ---------- ------c-a- gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- augcgug-gc augaggcgac 2161 (uuuauu--- ---------- ---------- ---)guugaa cgug------ ---------- 2221 --uuuacgcg --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uuggu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --UC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UGG- GAU-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCAGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CNNN--NNN ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacu g-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----accU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCCA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cgggucg--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -NGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uugc-ugcg- gagg-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucugcg-gcg -agaa-|cuc -agucgaacc uu-auc-a-u uuag~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Phym.lenor 5903 bp RNA RNA 16-DEC-1996 DEFINITION Phymatolithon lenormandii.. ACCESSION No information KEYWORDS No information. SOURCE Phymatolithon lenormandii. ORGANISM Phymatolithon lenormandii. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60741 LOCUS PLU60741 1720 bp DNA PLN 16-DEC-1996 DEFINITION Phymatolithon lenormandii nuclear 18S ribosomal RNA gene, partial sequence. ACCESSION U60741 NID g1732166 KEYWORDS . SOURCE Phymatolithon lenormandii. ORGANISM Phymatolithon lenormandii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Phymatolithon. REFERENCE 1 (bases 1 to 1720) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (13-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1720 /organism="Phymatolithon lenormandii" /strain="Kimmeridge, Dorset, UK" rRNA <1..>1720 /product="18S ribosomal RNA" BASE COUNT 420 a 346 c 470 g 442 t 42 others BASE COUNT 420 a 346 c 470 g 442 t 4225 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA0UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaauuac 301 u>AUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -AUCC(---- ----uuc)GG -U-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu a-guuc-cgg augugu--g- ca-c-(gucg u--)gugcgc acuuug---- 1801 ---------- ------c-a- gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- augcgug-gc augaggcgac 2161 (uuuauu--- ---------- ---------- ---)guugaa cgug------ ---------- 2221 --ucuacgcg --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAnn 2821 -nn-nnnnnn -nn-nn---- -------nn- nnn-nnnnnn n--nnnnnnn na--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACUAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacu g-------(u uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----accU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCC-G-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cgggucg--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uugc-ugcg- gagg-gagcg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucugcg-gcg -agaa-|cuc -agucgaacc uu-auc-a-u uuag~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Plo.cart.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plocamium cartilagineum. ACCESSION No information KEYWORDS No information. SOURCE Plocamium cartilagineum. ORGANISM Plocamium cartilagineum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09619 LOCUS PCU09619 1768 bp DNA PLN 07-DEC-1994 DEFINITION Plocamium cartilagineum small-subunit rRNA gene. ACCESSION U09619 KEYWORDS ribosomal RNA small subunit. SOURCE Plocamium cartilagineum. ORGANISM Plocamium cartilagineum Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Plocamiales; Plocamiaceae; Plocamium. REFERENCE 1 (bases 1 to 1768) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1768) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595311 FEATURES Location/Qualifiers source 1..1768 /organism="Plocamium cartilagineum" /isolate="VOUCHER GWS-G0002" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1768 /product="small-subunit rRNA" primer_bind complement(1741..1768) /note="PCR 3' end primer" BASE COUNT 444 a 365 c 504 g 455 t ORIGIN BASE COUNT 444 a 365 c 504 g 455 t 4135 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-uuu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augu<----- ---------- ---------- ---------- ---------- -----uauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAU C-----UU-A U-CGA-GUAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaguuu-ggc g-ggcg-aug uggggc--g- uc-u-(uaac ---)cgacga ucuca----- 1801 ---------- ------u-g- ucgg-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggaggc--- cuaguggugc 2161 (uucacu--- ---------- ---------- ---)gcauug cuag------ ---------- 2221 ----guuucu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggu-g-a-ga cu--(---gu uuu-u----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-ac-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUA-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uacuacc a-------(c ua-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguaaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-ugggg- gggc-uaga- ugaa-cugug ---------- ---------- 5701 -------(cu a-----)--- ---------- ---------- ---------- caca-gau-- 5761 uuucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Plo.cart.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Plocamium cartilagineum. ACCESSION No information KEYWORDS No information. SOURCE Plocamium cartilagineum. ORGANISM Plocamium cartilagineum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U43551 LOCUS PCU43551 1776 bp DNA PLN 25-JAN-1996 DEFINITION Plocamium cartilagineum small subunit rRNA gene, complete sequence. ACCESSION U43551 NID g1165234 KEYWORDS . SOURCE Plocamium cartilagineum. ORGANISM Plocamium cartilagineum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Plocamiales; Plocamiaceae; Plocamium. REFERENCE 1 (bases 1 to 1776) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1776) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165234 FEATURES Location/Qualifiers source 1..1776 /organism="Plocamium cartilagineum" /isolate="Santa Cruz Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1776 /product="small subunit rRNA" primer_bind complement(1745..>1776) /note="PCR primer" BASE COUNT 447 a 364 c 506 g 459 t ORIGIN BASE COUNT 446 a 364 c 504 g 457 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(-GA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-uuu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augu<----- ---------- ---------- ---------- ---------- -----uacac 301 u>ACUCGG-A UAACCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAU C-----UU-A U-CGA-GUAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaauuu-ggc g-ggcg-aug uggggc--g- uc-u-(uaac ---)cgacga ucuca----- 1801 ---------- ------u-g- ucgg-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuaguggugc 2161 (uucacu--- ---------- ---------- ---)gcauug uuag------ ---------- 2221 ----guuucu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggu-g-a-ga cu--(---gu uuu-u----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-ac-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUA-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uacuacc a-------(c ua-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguaaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- ugaa-cugug ---------- ---------- 5701 -------(cu a-----)--- ---------- ---------- ---------- caca-gau-- 5761 uuuuug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGUa---- -------~|| ||| // LOCUS Plo.pulv.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Plocamiocolax pulvinata. ACCESSION No information KEYWORDS No information. SOURCE Plocamiocolax pulvinata. ORGANISM Plocamiocolax pulvinata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09618 LOCUS PPU09618 1771 bp DNA PLN 07-DEC-1994 DEFINITION Plocamiocolax pulvinata small-subunit rRNA gene. ACCESSION U09618 KEYWORDS ribosomal RNA small subunit. SOURCE Plocamiocolax pulvinata. ORGANISM Plocamiocolax pulvinata Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Plocamiales; Plocamiaceae; Plocamiocolax. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595310 FEATURES Location/Qualifiers source 1..1771 /organism="Plocamiocolax pulvinata" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1771 /product="small-subunit rRNA" primer_bind complement(1744..1771) /note="PCR 3' end primer" BASE COUNT 446 a 365 c 504 g 456 t ORIGIN BASE COUNT 446 a 365 c 504 g 456 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-uuu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augu<----- ---------- ---------- ---------- ---------- -----uacac 301 u>AC-CGG-A UAACCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-AUCA U-|GGUCG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAU C-----UU-A U-CGA-GUAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaauuu-ggc g-ggcg-aug uggggc--g- uc-u-(uaac ---)cgacga ucuca----- 1801 ---------- ------u-g- ucgg-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuaguggugc 2161 (uucacu--- ---------- ---------- ---)gcauug uuag------ ---------- 2221 ----guuucu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggu-g-a-ga cu--(---gu uuu-u----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-ac-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUA-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uacuacc a-------(c ua-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguaaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- ugaa-cugug ---------- ---------- 5701 -------(cu a-----)--- ---------- ---------- ---------- caca-gau-- 5761 uuuuug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Plo.pulv.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Plocamiocolax pulvinata. ACCESSION No information KEYWORDS No information. SOURCE Plocamiocolax pulvinata. ORGANISM Plocamiocolax pulvinata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U43552 LOCUS PPU43552 1777 bp DNA PLN 25-JAN-1996 DEFINITION Plocamiocolax pulvinata small subunit rRNA gene, complete sequence. ACCESSION U43552 NID g1165235 KEYWORDS . SOURCE Plocamiocolax pulvinata. ORGANISM Plocamiocolax pulvinata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Plocamiales; Plocamiaceae; Plocamiocolax. REFERENCE 1 (bases 1 to 1777) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1777) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165235 FEATURES Location/Qualifiers source 1..1777 /organism="Plocamiocolax pulvinata" /isolate="Santa Cruz Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1777 /product="small subunit rRNA" primer_bind complement(1745..>1777) /note="PCR primer" BASE COUNT 448 a 364 c 506 g 459 t ORIGIN BASE COUNT 447 a 364 c 504 g 457 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-uuu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augu<----- ---------- ---------- ---------- ---------- -----uacac 301 u>ACUCGG-A UAACCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAU C-----UU-A U-CGA-GUAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaauuu-ggc g-ggcg-aug uggggc--g- uc-u-(uaac ---)cgacga ucuca----- 1801 ---------- ------u-g- ucgg-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuaguggugc 2161 (uucacu--- ---------- ---------- ---)gcauug uuag------ ---------- 2221 ----guuucu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggu-g-a-ga cu--(---gu uuu-u----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-ac-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUA-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uacuacc a-------(c ua-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguaaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uugC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- ugaa-cugug ---------- ---------- 5701 -------(cu a-----)--- ---------- ---------- ---------- caca-gau-- 5761 uuuuug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGUa---- -------~|| ||| // LOCUS Psi.scopar 5903 bp RNA RNA 05-NOV-1997 DEFINITION Psilosiphon scoparium.. ACCESSION No information KEYWORDS No information. SOURCE Psilosiphon scoparium. ORGANISM Psilosiphon scoparium. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026041 LOCUS AF026041 1765 bp DNA PLN 05-NOV-1997 DEFINITION Psilosiphon scoparium 18S ribosomal RNA gene, complete sequence. ACCESSION AF026041 NID g2564924 KEYWORDS . SOURCE Psilosiphon scoparium. ORGANISM Psilosiphon scoparium Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Psilosiphonaceae; Psilosiphon. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Psilosiphon scoparium" /isolate="G0084" /db_xref="taxon:67903" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 421 a 392 c 518 g 434 t BASE COUNT 421 a 392 c 518 g 434 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagu-a-auu ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U CAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uucu)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-cgcg-ccg ggcugu--g- cg-c-(guaa u--)gcgugc ggcg------ 1801 ---------- ------c-g- gcgc-g---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uuuacu--- ---------- ---------- ---)guugcg ggcg------ ---------- 2221 ---ugccggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----u uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcuguc--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ccc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Pted.luc.1 5903 bp RNA RNA 26-MAR-1997 DEFINITION Pterocladia lucida.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida. REFERENCE 1 (bases 1 to 2340) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Y11958 LOCUS PLY11958 1720 bp DNA PLN 26-MAR-1997 DEFINITION P.lucida 18S rRNA gene. ACCESSION Y11958 NID g1911137 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladia. REFERENCE 1 (bases 1 to 1720) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1720 /organism="Pterocladia lucida" rRNA 1..1720 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 423 a 358 c 495 g 444 t BASE COUNT 423 a 358 c 495 g 444 t 4183 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaaaauc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-G UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCUGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -CGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagcuu-ggu a-ggug-acg cagggu--g- uc-u-(uugc ---)ggacag aucug----- 1801 ---------- ------u-a- ucaa-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuaguggagc 2161 (uuuauu--- ---------- ---------- ---)gccuca cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-gcg- cu--(---gu uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcaagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- caca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pted.luc.2 5903 bp RNA RNA 21-SEP-1998 DEFINITION Pterocladia lucida.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE separate and combined analyses of plastid rbcL and nuclear SSU gene sequences Molecular systematics of the Gelidiales: inferences from JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60349 LOCUS PLU60349 1704 bp DNA PLN 21-SEP-1998 DEFINITION Pterocladia lucida 18S ribosomal RNA gene, partial sequence. ACCESSION U60349 NID g1732136 KEYWORDS . SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladia. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Pterocladia lucida" /strain="Owhiro Bay, South Wellington, New Zealand" /db_xref="taxon:31408" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 349 a 314 c 415 g 383 t 243 others BASE COUNT 349 a 314 c 415 g 383 t 4442 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGNN N---->NNNN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acg cagggc--a- uc-u-(uugc ---)ggaugg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- cuaguggugc 2161 (uuuauu--- ---------- ---------- ---)gccucu cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gu uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-nncu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGNNNNNN NN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNNN-NN )NNNN--NNN NNNNNNNNNN NN[nnn-nnn 4081 nnnn-nnnnn nn-----nnn nnn(nnnnnn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNNUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgaug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- caca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ptel.cap.1 5903 bp RNA RNA 26-MAR-1997 DEFINITION Pterocladiella capillacea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea. REFERENCE 1 (bases 1 to 2340) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Y11957 LOCUS PCY11957 1720 bp DNA UNA 26-MAR-1997 DEFINITION P.capillacea 18S rRNA gene. ACCESSION Y11957 NID g1911134 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea Unclassified. REFERENCE 1 (bases 1 to 1720) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1720 /organism="Pterocladiella capillacea" /isolate="Ireland" rRNA 1..1720 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 427 a 356 c 493 g 444 t BASE COUNT 427 a 356 c 493 g 444 t 4183 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaaaauc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggu a-ggug-acg cagggu--g- uc-u-(uugc ---)ggacag aucug----- 1801 ---------- ------u-a- ucaa-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuaguggagc 2161 (uuuauu--- ---------- ---------- ---)gccuca cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-gcg- cu--(---gu uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gg--c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcaagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- caca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ptel.cap.2 5903 bp RNA RNA 26-MAR-1997 DEFINITION Pterocladiella capillacea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea. REFERENCE 1 (bases 1 to 2340) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) Nucleotide sequences of small-subunit and internal JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Y11960 LOCUS PCY11960 1720 bp DNA UNA 26-MAR-1997 DEFINITION P.capillacea 18S rRNA gene. ACCESSION Y11960 NID g1911135 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; internal transcribed spacer; ITS1; ITS2. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea Unclassified. REFERENCE 1 (bases 1 to 1720) AUTHORS Patwary,M.U., Sensen,C.W. and MacKay,R.M. TITLE Nucleotide sequences of small-subunit and internal transcribed spacer regions of nuclear rRNA genes support the autonomy of some genera of the Gelidiales (Rhodophyta) JOURNAL Unpublished REFERENCE 2 (bases 1 to 1720) AUTHORS Sensen,C.W. TITLE Direct Submission JOURNAL Submitted (19-MAR-1997) C.W. Sensen, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, N.S., B3H 3Z1, CANADA FEATURES Location/Qualifiers source 1..1720 /organism="Pterocladiella capillacea" rRNA 1..1720 /gene="18S rRNA" /product="18S ribosomal RNA" BASE COUNT 427 a 358 c 491 g 444 t BASE COUNT 427 a 358 c 491 g 444 t 4183 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaaaauc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- --CCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggu a-ggug-acg cagggu--g- uc-u-(uugc ---)ggacag aucug----- 1801 ---------- ------u-a- ucaa-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuaguggagc 2161 (uuuauu--- ---------- ---------- ---)gccuca cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGU-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-gcg- cu--(---gu uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcaagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- caca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ptel.cap.3 5903 bp RNA RNA 21-SEP-1998 DEFINITION Pterocladiella capillacea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE SSU gene sequences Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60346 LOCUS PCU60346 1705 bp DNA PLN 21-SEP-1998 DEFINITION Pterocladiella capillacea 18S ribosomal RNA gene, partial sequence. ACCESSION U60346 NID g1732135 KEYWORDS . SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladiella. REFERENCE 1 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1705) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1705 /organism="Pterocladiella capillacea" /strain="LaJolla, San Diego Co., CA, USA" /db_xref="taxon:70838" rRNA <1..>1705 /product="18S ribosomal RNA" BASE COUNT 367 a 312 c 413 g 382 t 231 others BASE COUNT 367 a 312 c 413 g 382 t 4429 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaaaauc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAAA 1561 AGCA|GA-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|NNNNNN 1621 N-NNNNNA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggu a-ggug-acg cagggu--g- uc-u-(uugc ---)ggacag aucug----- 1801 ---------- ------u-a- ucaa-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuaguggagc 2161 (uuuauu--- ---------- ---------- ---)gccuca cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-gcg- cu--(---gu uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AN--NN-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNNN-NN )NNNN--NNN NNNNNNNNNN NN[nnn-nnn 4081 nnnn-nnnnn nn-----nnn nnn(nnnnnn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uguuacc --------(c cuuu-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcaagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- caca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Ptel.melan 5903 bp RNA RNA 21-SEP-1998 DEFINITION Pterocladiella melanoidea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella melanoidea. ORGANISM Pterocladiella melanoidea. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE separate and combined analyses of plastid rbcL and nuclear SSU gene sequences Molecular systematics of the Gelidiales: inferences from JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60341 LOCUS PMU60341 1702 bp DNA PLN 21-SEP-1998 DEFINITION Pterocladiella melanoidea 18S ribosomal RNA gene, partial sequence. ACCESSION U60341 NID g1732137 KEYWORDS . SOURCE Pterocladiella melanoidea. ORGANISM Pterocladiella melanoidea Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladia. REFERENCE 1 (bases 1 to 1702) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1702) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1702 /organism="Pterocladiella melanoidea" /strain="Mallorca, Spain" /db_xref="taxon:28860" rRNA <1..>1702 /product="18S ribosomal RNA" BASE COUNT 397 a 337 c 454 g 401 t 113 others BASE COUNT 397 a 337 c 454 g 401 t 4314 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaaaauc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CANN 1561 NNNN|NN-NN N-NN-N-NNN N-N(NNN-NN -NNNN|NN-N NN-NN)NNNN NN-|NNNNGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc a-ggug-acg cagggu--g- uc-u-(uugc ---)ggacag aucug----- 1801 ---------- ------u-a- ucag-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- uuaguggagc 2161 (uuuauu--- ---------- ---------- ---)gccuca cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gu uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cun-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNNNN- -NNN(NN-NN NN)NNNNNN- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uguuacc --------(c cuuu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcaagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- caca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-a~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pti.pinnat 5903 bp RNA RNA 21-SEP-1998 DEFINITION Ptilophora pinnatifida.. ACCESSION No information KEYWORDS No information. SOURCE Ptilophora pinnatifida. ORGANISM Ptilophora pinnatifida. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60345 LOCUS PPU60345 1704 bp DNA PLN 21-SEP-1998 DEFINITION Ptilophora pinnatifida 18S ribosomal RNA gene, partial sequence. ACCESSION U60345 NID g1732138 KEYWORDS . SOURCE Ptilophora pinnatifida. ORGANISM Ptilophora pinnatifida Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Ptilophora. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Ptilophora pinnatifida" /strain="Palm Beach, Natal, South Africa" /db_xref="taxon:37204" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 406 a 365 c 495 g 436 t 2 others BASE COUNT 406 a 365 c 495 g 436 t 4201 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaauuu-ggc g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- uuaguggugc 2161 (uuuguu--- ---------- ---------- ---)gcuuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cguuacc --------(c cuuu-c-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gaag-- ccu-uggga- gggc-uagu- cgga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- uaca-gac-- 5761 caucug-gcc -caaa-|cuu -ggncaaacc uu-anc-a~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Pti.subcos 5903 bp RNA RNA 21-SEP-1998 DEFINITION Ptilophora subcostata.. ACCESSION No information KEYWORDS No information. SOURCE Ptilophora subcostata. ORGANISM Ptilophora subcostata. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60348 LOCUS PSU60348 1704 bp DNA PLN 21-SEP-1998 DEFINITION Ptilophora subcostata 18S ribosomal RNA gene, partial sequence. ACCESSION U60348 NID g1732139 KEYWORDS . SOURCE Ptilophora subcostata. ORGANISM Ptilophora subcostata Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Ptilophora. REFERENCE 1 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Molecular systematics of the Gelidiales: inferences from separate and combined analyses of plastid rbcL and nuclear SSU gene sequences JOURNAL Eur. J. Phycol. 32, 343-352 (1997) REFERENCE 2 (bases 1 to 1704) AUTHORS Bailey,J.C. and Freshwater,D.W. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1704 /organism="Ptilophora subcostata" /strain="Katasehigashihama, Fujisawa, Kanagawa, Japan" /db_xref="taxon:37205" rRNA <1..>1704 /product="18S ribosomal RNA" BASE COUNT 399 a 348 c 467 g 412 t 78 others BASE COUNT 399 a 348 c 467 g 412 t 4277 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A N-NNN-NNNN N---->NNNN 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaauuu-ggu g-ggcg-acg cagggc--g- uc-u-(uugc ---)ggacgg aucug----- 1801 ---------- ------u-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- uuaguggugc 2161 (uuuauu--- ---------- ---------- ---)gcuuug cuaa------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-U-UGU ACACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AAU-UAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCUGCCG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-gcg- cu--(---gc uuuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uunnnn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNNNNC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--uguuacc --------(c cuuu-a-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcgagg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ggc(gaga-) gcuuu----u ccuaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gaag-- ccu-uggga- gggc-uagu- cgga-uugug ---------- ---------- 5701 -------(uc ua----)--- ---------- ---------- ---------- caca-gac-- 5761 caucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Rhdc.purpu 5903 bp RNA RNA 11-JAN-191 DEFINITION Rhodochorton purpureum. ACCESSION No information KEYWORDS No information. SOURCE Rhodochorton purpureum. ORGANISM Rhodochorton purpureum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23816 LOCUS RPU23816 1771 bp DNA PLN 06-SEP-1995 DEFINITION Rhodochorton purpureum 18S ribosomal RNA gene, complete sequence. ACCESSION U23816 KEYWORDS . SOURCE Rhodochorton purpureum. ORGANISM Rhodochorton purpureum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Acrochaetiales; Acrochaetiaceae; Rhodochorton. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975286 FEATURES Location/Qualifiers source 1..1771 /isolate="culture GWS3112" /organism="Rhodochorton purpureum" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1744..1771) /note="3' end PCR primer" BASE COUNT 427 a 383 c 517 g 444 t ORIGIN BASE COUNT 427 a 383 c 517 g 444 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCAU(---- ---uuau)AU GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-c-(guag u--)gcgugc ggcgc----- 1801 ---------- ------u-g- gggu-g---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uuuacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgu c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcugcuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----guCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -gaaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Rhdd.orego 5903 bp RNA RNA 05-NOV-1997 DEFINITION Rhododraparnaldia oregonica.. ACCESSION No information KEYWORDS No information. SOURCE Rhododraparnaldia oregonica. ORGANISM Rhododraparnaldia oregonica. REFERENCE 1 (bases 1 to 2340) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026043 OCUS AF026043 1771 bp DNA PLN 05-NOV-1997 DEFINITION Rhododraparnaldia oregonica 18S ribosomal RNA gene, complete sequence. ACCESSION AF026043 NID g2564926 KEYWORDS . SOURCE Rhododraparnaldia oregonica. ORGANISM Rhododraparnaldia oregonica Eukaryotae; Rhodophyta; Florideophyceae; Acrochaetiales; unclassified Acrochaetiales; Rhododraparnaldia. REFERENCE 1 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Rhododraparnaldia oregonica" /db_xref="taxon:67958" primer_bind 1..20 rRNA 1..1771 /product="18S rRNA" primer_bind complement(1744..1771) BASE COUNT 430 a 383 c 518 g 440 t BASE COUNT 430 a 383 c 518 g 440 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 AAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-ggcu-ccg ugcugu--g- cg-c-(guaa u--)gcgugc ggcgc----- 1801 ---------- ------u-g- gggc-g---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcgucguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgc------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uuggug---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --UC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-a-g-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agcugcuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gcCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguuua-- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- auu-uggga- cugc-ugcg- aucg-gagcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Rhdg.carri 5903 bp RNA RNA 11-JUN-1997 DEFINITION Rhodogorgon carriebowensis.. ACCESSION No information KEYWORDS No information. SOURCE Rhodogorgon carriebowensis. ORGANISM Rhodogorgon carriebowensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Phylogenesis of pit-plug associated features in the Rhodophyta: inferences from molecular systematic data JOURNAL Can. J. Bot. (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF006089 LOCUS AF006089 1841 bp DNA PLN 11-JUN-1997 DEFINITION Rhodogorgon carriebowensis small-subunit ribosomal RNA gene, complete sequence. ACCESSION AF006089 NID g2183327 KEYWORDS . SOURCE Rhodogorgon carriebowensis. ORGANISM Rhodogorgon carriebowensis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Rhodogorgonales; Rhodogorgonaceae; Rhodogorgon. REFERENCE 1 (bases 1 to 1841) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Phylogenesis of pit-plug associated features in the Rhodophyta: inferences from molecular systematic data JOURNAL Can. J. Bot. (1997) In press REFERENCE 2 (bases 1 to 1841) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (23-MAY-1997) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1841 /organism="Rhodogorgon carriebowensis" primer_bind 1..20 rRNA 21..1813 /product="small-subunit ribosomal RNA" primer_bind complement(1814..1841) BASE COUNT 439 a 391 c 547 g 464 t BASE COUNT 439 a 391 c 547 g 464 t 4062 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaacuuac 301 u>AUUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---acu--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----gau)GG GU-GC-CCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaaguu-ggu g-gucu-ugc gggugc--g- cg-c-(guug a--)gcguac gccug----- 1801 ---------- ------u-c- gagg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 u-ugcgcgca cgggcggc-- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uu uagugucgaa cguguugggu 2161 (uucgcu--- ---------- ---------- ---)gcuuug gcguucacgc ggcagagcgg 2221 cggaggcgca --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgguuu--- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU GUU-GU---- ------GAG- GGG-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA CU|--UGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-gug-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uauuacc g-------(c uuuu-uu)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugagagcu uuuuu----- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gacCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucag cgggcga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u ccuaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGGU( UGCAAUUC)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- uugu-cgug- aggg-gagcg ---------- ---------- 5701 -------(uu ug----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 uucgug-aag -aaaa-|cuu -ggucgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Rhdm.confe 5903 bp RNA RNA 30-JUN-1994 DEFINITION Rhodomela confervoides. ACCESSION No information KEYWORDS No information. SOURCE Rhodomela confervoides. ORGANISM Rhodomela confervoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26203 LOCUS RMAFRA 1764 bp DNA PLN 30-JUN-1994 DEFINITION Rhodomela confervoides DNA fragment. ACCESSION L26203 NID g507799 KEYWORDS PCR amplified. SOURCE Rhodomela confervoides DNA. ORGANISM Rhodomela confervoides Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Ceramiales; Rhodomelaceae; Rhodomela. REFERENCE 1 (bases 1 to 1764) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L., Gutell,R.R., Murphy,C.A. and Singh,R.K. TITLE A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene JOURNAL Unpublished (1994) FEATURES Location/Qualifiers source 1..1764 /organism="Rhodomela confervoides" /db_xref="taxon:35163" primer_bind 1..22 /standard_name="PCR primer" /note="putative" primer_bind 1738..1764 /standard_name="PCR primer" /note="putative" BASE COUNT 462 a 356 c 480 g 466 t BASE COUNT 462 a 356 c 480 g 466 t 4139 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUGC-CU GU|------- |-------(- ---)[----- 121 ---------- --------au gagugu--uu ---------- -au-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 ggga<----- ---------- ---------- ---------- ---------- ----uaauac 301 u>ACUCGG-A UAACCGUAG( -U-AAAG)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gccccgauc -aa|auuucu ga|--CCU-A UCA--ACUAU --GAUGGUA- 1141 AG(-GUAGGG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-A( ---acu--)U 1321 CGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GACC(---- ----aau)GG UC-UU-CCUA A-UUGGAAU- 1501 ------GAAA ----ACAAUG -UAAA--CAC C-----UU-A U-UGA-GGAA C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-ugug-cua cugaaa--c- uc---(cuaa aa-)gauguu gaug------ 1801 ---------- ------u-a- gcuc------ ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggu--- guggugguac 2161 (uuuauu--- ---------- ---------- ---)guauug ccgc------ ---------- 2221 ----auuucc --------gc cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GAGCG----- ---------- ---------- ---------- 2521 --------AU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-AUUGGU -UU-GU---- ------UGG- UAU-CAGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--UGUAU UCCAGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAAUA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg gac-g-u-gg cc--(----- uauu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggu-a c-gu-ucg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUA-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uaau-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgc ---auguuau u-------(c uugu---)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------aaua gcau------ ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----cgCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUA-G -G-C(----- 5041 --UUUUA-)G CCUA-U-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A ACGGU----- ---------- 5281 ---(------ ----)[ucaa uggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ag ugc(gaaa-) gcaug----a cccaau-cuc --uaaa]--- ---------- 5461 -------ucc guu-c-g--- uGCU-G-GGG AUAGAAGCU( UGCAAUUC)U CCUUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GAG (-UCAUCAU- )CUCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- gagc-ugga- ugga-uugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-aac-- 5761 cauuug-gcu -ucaa-|cuu -agucaaacc uu-acu-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GAA~~~~~ ~~~~~~~~|| ||| // LOCUS Rhdp.elega 5903 bp RNA RNA 11-JAN-191 DEFINITION Rhodophysema elegans. ACCESSION No information KEYWORDS No information. SOURCE Rhodophysema elegans. ORGANISM Rhodophysema elegans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23817 LOCUS REU23817 1771 bp DNA PLN 06-SEP-1995 DEFINITION Rhodophysema elegans 18S ribosomal RNA gene, complete sequence. ACCESSION U23817 KEYWORDS . SOURCE Rhodophysema elegans. ORGANISM Rhodophysema elegans Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Palmariales; Rhodophysemataceae; Rhodophysema. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975284 FEATURES Location/Qualifiers source 1..1771 /isolate="culture GWS1113" /organism="Rhodophysema elegans" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1744..1771) /note="3' end PCR primer" BASE COUNT 428 a 383 c 516 g 444 t ORIGIN BASE COUNT 428 a 383 c 516 g 444 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUUCU-G( ---aca--)C 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-c-(guaa u--)gcgugc ggcgc----- 1801 ---------- ------u-g- gggc-g---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- gcguuguggc 2161 (uuuacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGC|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---AUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-a-g-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcuguuc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gcUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-cgcg- guug-aggcg ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcc-cug-- 5761 gccgca-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Rhdt.flori 5903 bp RNA RNA 11-JAN-191 DEFINITION Rhodothamniella floridula. ACCESSION No information KEYWORDS No information. SOURCE Rhodothamniella floridula. ORGANISM Rhodothamniella floridula. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U23818 LOCUS RFU23818 1771 bp DNA PLN 06-SEP-1995 DEFINITION Rhodothamniella floridula 18S ribosomal RNA gene, complete sequence. ACCESSION U23818 KEYWORDS . SOURCE Rhodothamniella floridula. ORGANISM Rhodothamniella floridula Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Palmariales; Rhodothamniellaceae; Rhodothamniella. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W., Bird,C.J., Ragan,M.A. and Rice,E.L. TITLE Phylogenetic relationships of species of uncertain taxonomic position within the Acrochaetiales/Palmariales complex (Rhodophyta): inferences from phenotypic and 18S rDNA sequence data JOURNAL J. Phycol. (1995) In press REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (30-MAR-1995) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria 3052, Australia COMMENT NCBI gi: 975285 FEATURES Location/Qualifiers source 1..1771 /isolate="culture CCAP1360/6" /organism="Rhodothamniella floridula" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' end PCR primer" primer_bind complement(1744..1771) /note="3' end PCR primer" BASE COUNT 426 a 384 c 517 g 444 t ORIGIN BASE COUNT 426 a 384 c 517 g 444 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-uggc-ccg ugcugu--g- cg-u-(guag u--)gcgugc ggcgc----- 1801 ---------- ------u-g- ggac-g---- ---------c gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- ucguuguggc 2161 (uucacu--- ---------- ---------- ---)gucgcg gcgu------ ---------- 2221 ----gucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- uuUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCUGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cgcuac- --------(c auug-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu agcuguuc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gcUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua cgc(gaga-) gcguu----u cccaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- cugc-cgcg- guug-aggcg ---------- ---------- 5701 -------(uu ca----)--- ---------- ---------- ---------- cgcc-cug-- 5761 gccgca-gug -ggaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Rhdy.linea 5903 bp RNA RNA 11-JAN-191 DEFINITION Rhodymenia linearis. ACCESSION No information KEYWORDS No information. SOURCE Rhodymenia linearis. ORGANISM Rhodymenia linearis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09621 LOCUS RLU09621 1771 bp DNA PLN 07-DEC-1994 DEFINITION Rhodymenia linearis small-subunit rRNA gene. ACCESSION U09621 KEYWORDS ribosomal RNA small subunit. SOURCE Rhodymenia linearis. ORGANISM Rhodymenia linearis Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Rhodymeniales; Rhodymeniaceae; Rhodymenia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595313 FEATURES Location/Qualifiers source 1..1771 /organism="Rhodymenia linearis" /isolate="VOUCHER GWS-G0001" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1771 /product="small-subunit rRNA" primer_bind complement(1744..1771) /note="PCR 3' end primer" BASE COUNT 435 a 375 c 510 g 451 t ORIGIN BASE COUNT 435 a 375 c 510 g 451 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- -----uauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaacuu-ggc g-ggcg-acu ugccuc--g- uc-c-(ucgc ---)ggaugu uggca----- 1801 ---------- ------g-g- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- cuagugguuc 2161 (uuuacu--- ---------- ---------- ---)gcaucg cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- AAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gagau-cg ggc-g-g-gg cu--(---gu cauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cgggcga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcauu----u ccaaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaaa- ugga-cugug ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- cacg-gac-- 5761 cguuug-gcc -caaa-|cuu -ggccaagcc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Sar.furcat 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcodiotheca furcata. ACCESSION No information KEYWORDS No information. SOURCE Sarcodiotheca furcata. ORGANISM Sarcodiotheca furcata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U43553 LOCUS SFU43553 1777 bp DNA PLN 25-JAN-1996 DEFINITION Sarcodiotheca furcata small subunit rRNA gene, complete sequence. ACCESSION U43553 NID g1165236 KEYWORDS . SOURCE Sarcodiotheca furcata. ORGANISM Sarcodiotheca furcata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Sarcodiotheca. REFERENCE 1 (bases 1 to 1777) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1777) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165236 FEATURES Location/Qualifiers source 1..1777 /organism="Sarcodiotheca furcata" /isolate="San Juan Island, WA (Mosquito Pass)." primer_bind 1..22 /note="PCR primer" rRNA 1..1777 /product="small subunit rRNA" primer_bind complement(1745..>1777) /note="PCR primer" BASE COUNT 423 a 380 c 529 g 445 t ORIGIN BASE COUNT 422 a 380 c 527 g 443 t 4131 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 gugg<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUUUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACACGG -UAAA--CAG U-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggc g-ggca-ggc uggggc--g- uc-u-(uuac ---)ggacgg uucca----- 1801 ---------- ------g-gg cugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- ccggcgucgc 2161 (uucagu--- ---------- ---------- ---)gcgucg gcgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGC--A-UGA AUACAU-UAG CAUGGAA|UA --ua-aa-ua -gga-----c 2581 cuguc----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CAAACG-G CUGC(-GAAA )---C|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --aggau-cg ggc-a-g-ga cu--(--uga uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-gc-ccg-g ca-cccu--- ---------- ---uucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGGC|C GU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gacuacc --------(c cuua-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu aguggggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCC--C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) -cgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 cgucug-gcc -caaa-|cuu -gguuaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGUa---- -------~|| ||| // LOCUS Sar.gaud.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcodiotheca gaudichaudii. ACCESSION No information KEYWORDS No information. SOURCE Sarcodiotheca gaudichaudii. ORGANISM Sarcodiotheca gaudichaudii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U43550 LOCUS SGU43550 1780 bp DNA PLN 25-JAN-1996 DEFINITION Sarcodiotheca gaudichaudii small subunit rRNA gene, complete sequence. ACCESSION U43550 NID g1165237 KEYWORDS . SOURCE Sarcodiotheca gaudichaudii. ORGANISM Sarcodiotheca gaudichaudii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Sarcodiotheca. REFERENCE 1 (bases 1 to 1780) AUTHORS Goff,L.J., Moon,D. A., Nyvall,S, Stache,B, Mangin,K and Zuccarello,G. TITLE The evolution of parasitism in the red algae JOURNAL J. Phycol. 32 (1996) In press REFERENCE 2 (bases 1 to 1780) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (19-DEC-1995) Lynda J. Goff, Biology, University of California, Santa Cruz, Earth and Marine Sciences Building, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 1165237 FEATURES Location/Qualifiers source 1..1780 /organism="Sarcodiotheca gaudichaudii" /isolate="Stillwater Cove, Monterey Co., CA" primer_bind 1..22 /note="PCR primer" rRNA 1..1780 /product="small subunit rRNA" primer_bind complement(1748..>1780) /note="PCR primer" BASE COUNT 422 a 380 c 531 g 445 t 2 others ORIGIN BASE COUNT 421 a 380 c 529 g 443 t 4130 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 gugg<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUUUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUUCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ---aacg)GG NU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACACGG -UAAA--CAG U-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggc g-ggca-ggc uggggc--g- uc-u-(uuac ---)ggacgg uucca----- 1801 ---------- ------g-gg cugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--c cggcgucugc 2161 (uucagu--- ---------- ---------- ---)gcgucg gcgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGC--A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguc----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AGG- A-CAAACG-G CUGC(-GAAA )---C|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-g-ga cu--(--uga uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gcg-c u-gc-ccg-g ca-cccu--- ---------- ---cucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGGC|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gacuacc --------(c cuua-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agungggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UC---C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 cgucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --AGUa---- -------~|| ||| // LOCUS Sar.gaud.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Sarcodiotheca gaudichaudii. ACCESSION No information KEYWORDS No information. SOURCE Sarcodiotheca gaudichaudii. ORGANISM Sarcodiotheca gaudichaudii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33062 LOCUS SGU33062 1725 bp DNA PLN 20-SEP-1995 DEFINITION Sarcodiotheca gaudichaudii small subunit ribosomal RNA gene, complete sequence. ACCESSION U33062 KEYWORDS . SOURCE Sarcodiotheca gaudichaudii. ORGANISM Sarcodiotheca gaudichaudii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Solieriaceae; Sarcodiotheca. REFERENCE 1 (bases 1 to 1725) AUTHORS Goff,L.J. TITLE Direct Submission JOURNAL Submitted (02-AUG-1995) Lynda J. Goff, Earth and Marine Sciences, Biology, University of California, Santa Cruz, CA 95064, USA COMMENT NCBI gi: 992652 FEATURES Location/Qualifiers source 1..1725 /organism="Sarcodiotheca gaudichaudii" /strain="Stillwater Cove, Monterey Co." rRNA 1..1725 /product="small subunit rRNA" BASE COUNT 408 a 369 c 515 g 431 t 2 others ORIGIN BASE COUNT 408 a 369 c 515 g 431 t 4180 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 gugg<----- ---------- ---------- ---------- ---------- ---uaaauac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUUUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUUCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ---aacg)GG NU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACACGG -UAAA--CAG U-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggc g-ggca-ggc uggggc--g- uc-u-(uuac ---)ggacgg uucca----- 1801 ---------- ------g-gg cugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--c cggcgucugc 2161 (uucagu--- ---------- ---------- ---)gcgucg gcgu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGC--A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguc----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AGG- A-CAAACG-G CUGC(-GAAA )---C|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-a-g-ga cu--(--uga uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gcg-c u-gc-ccg-g ca-cccu--- ---------- ---cucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGGC|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gacuacc --------(c cuua-u-)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agungggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UC---C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAU-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-aaga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 cgucug-gcc -caaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C C~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Schi.dubyi 5903 bp RNA RNA 26-JUL-1996 DEFINITION Schizymenia dubyi.. ACCESSION No information KEYWORDS No information. SOURCE Schizymenia dubyi. ORGANISM Schizymenia dubyi. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33136 LOCUS SDU33136 1771 bp DNA PLN 26-JUL-1996 DEFINITION Schizymenia dubyi 18S ribosomal RNA gene, complete sequence. ACCESSION U33136 NID g1463116 KEYWORDS . SOURCE Schizymenia dubyi. ORGANISM Schizymenia dubyi Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Schizymeniaceae; Schizymenia. REFERENCE 1 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1771) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1771 /organism="Schizymenia dubyi" /note="isolate G0041" rRNA 1..1771 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1744..1771) /note="3' PCR primer" BASE COUNT 437 a 366 c 517 g 451 t BASE COUNT 437 a 366 c 517 g 451 t 4132 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ----uaacac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|guuucu ga|--UCU-A UCA--ACUAU --GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCCC(---- ----aau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAAAG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu-ggc g-ggcg-aug cagggc--g- uc-c-(ucgc ---)ggauga uucug----- 1801 ---------- ------u-a- uugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ucagcgguuc 2161 (uuaguu--- ---------- ---------- ---)ggaucg uugg------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugc------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg gau-g-g-ga cu--(---gu uuuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-au-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGACA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cgguacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu accgaggcu- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ua ugc(gaga-) gcauu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- aggc-uaga- uagu-uugug ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cacg-gac-- 5761 cguuug-gcc -ccaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Scho.nicae 5903 bp RNA RNA 26-JUL-1996 DEFINITION Schottera nicaeensis.. ACCESSION No information KEYWORDS No information. SOURCE Schottera nicaeensis. ORGANISM Schottera nicaeensis. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33137 LOCUS SNU33137 1775 bp DNA PLN 26-JUL-1996 DEFINITION Schottera nicaeensis 18S ribosomal RNA gene, complete sequence. ACCESSION U33137 NID g1463118 KEYWORDS . SOURCE Schottera nicaeensis. ORGANISM Schottera nicaeensis Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Phyllophoraceae; Schottera. REFERENCE 1 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1775 /organism="Schottera nicaeensis" /note="isolate G0077" rRNA 1..1775 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1748..1775) /note="3' PCR primer" BASE COUNT 434 a 374 c 524 g 443 t BASE COUNT 434 a 374 c 524 g 443 t 4128 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacgac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----aac)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggca-auc uagggc--g- uc-u-(ucac ---)ggacgg uucug----- 1801 ---------- ------g-a- gugg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- ccaguggagc 2161 (uucacu--- ---------- ---------- ---)gcguca cugu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cugua----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggu-a-g-ga cu--(---gu auuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-ac-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--gaguacc g-------(a uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu acugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- ggga-uaga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 cguccg-gcc -ccaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Seb.flabel 5903 bp RNA RNA 26-JUL-1996 DEFINITION Sebdenia flabellata.. ACCESSION No information KEYWORDS No information. SOURCE Sebdenia flabellata. ORGANISM Sebdenia flabellata. REFERENCE 1 (bases 1 to 2340) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE selected families of the Gigartinales and Rhodymeniales (Rodophyta) . 2. recognition of the Halymeniales ord.nov Small-subunit rRNA gene sequences from representatives of JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33138 LOCUS SFU33138 1768 bp DNA PLN 26-JUL-1996 DEFINITION Sebdenia flabellata 18S ribosomal RNA gene, complete sequence. ACCESSION U33138 NID g1463117 KEYWORDS . SOURCE Sebdenia flabellata. ORGANISM Sebdenia flabellata Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Gigartinales; Phyllophoraceae; Sebdenia. REFERENCE 1 (bases 1 to 1768) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rodophyta). 2. recognition of the Halymeniales ord.nov JOURNAL Can. J. Bot. 74 (5), 694-707 (1996) REFERENCE 2 (bases 1 to 1768) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Direct Submission JOURNAL Submitted (03-AUG-1995) Gary W. Saunders, Department of Biology, University of New Brunswick, Fredericton, New Brunswick E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1768 /organism="Sebdenia flabellata" /note="isolate G0192" rRNA 1..1768 /product="18S ribosomal RNA" primer_bind 1..20 /note="5' PCR primer" primer_bind complement(1741..1768) /note="3' PCR primer" BASE COUNT 427 a 372 c 518 g 451 t BASE COUNT 427 a 372 c 518 g 451 t 4135 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- -----uaugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCG-G( ---acg--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaaguu-ggc g-ggcg-auu uggggc--g- uc-c-(ucgc ---)ggaugu ucuca----- 1801 ---------- ------g-a- ucgg-c---- ---------c gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ugggggc--- cuaguggugc 2161 (uuuacu--- ---------- ---------- ---)gccucg cuag------ ---------- 2221 ----gucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAG- GAU-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GUUGG-AAG- A-CAAACA-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GAgau-cg ggc-g-g-gg cu--(---gu -uuuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-uccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -GA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GU UAGCUAGGcg c--cauuacc g-------(c uua----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agugaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uaGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAAACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G CCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- UGCU-G-GGG AUCGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-uggga- gggc-uaga- uaga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- caca-gac-- 5761 cauuug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Ser.macmil 5903 bp RNA RNA 16-DEC-1996 DEFINITION Serraticardia macmillanii.. ACCESSION No information KEYWORDS No information. SOURCE Serraticardia macmillanii. ORGANISM Serraticardia macmillanii. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U62114 LOCUS SMU62114 1725 bp DNA PLN 16-DEC-1996 DEFINITION Serraticardia macmillanii nuclear 18S rRNA gene, partial sequence. ACCESSION U62114 NID g1732191 KEYWORDS . SOURCE Serraticardia macmillanii. ORGANISM Serraticardia macmillanii Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Serraticardia. REFERENCE 1 (bases 1 to 1725) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1725) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (26-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1725 /organism="Serraticardia macmillanii" /strain="MacKerracher State Park, Mendocino Co., CA, USA" rRNA <1..>1725 /product="18S rRNA" BASE COUNT 438 a 359 c 482 g 446 t BASE COUNT 438 a 359 c 482 g 446 t 4178 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaggaa-uaa ---------- -uu-a-agac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 auga<----- ---------- ---------- ---------- ---------- ---uucuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- UACCU(---- ----uau)GG GA-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc a-auuc-cgg augugu--g- cg-c-(gucg u--)gcgcgc acuucg---- 1801 ---------- ------c-a- gggg-u---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------c- augcgug-gg augaggcaac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguc------ ---------- 2221 --cuuacgcg --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------AU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCU|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCCGG-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----a ucgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu acuacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G UCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --gaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CUGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- uugc-gaug- gaaa-gagcg ---------- ---------- 5701 -------(au u-----)--- ---------- ---------- ---------- cgcu-cgu-- 5761 ucuguc-gug -agaa-|cuc -agucgaacc uu-auc-a~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Sir.huille 5903 bp RNA RNA 05-NOV-1997 DEFINITION Sirodotia huillensis.. ACCESSION No information KEYWORDS No information. SOURCE Sirodotia huillensis. ORGANISM Sirodotia huillensis. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026054 LOCUS AF026054 1765 bp DNA PLN 05-NOV-1997 DEFINITION Sirodotia huillensis 18S ribosomal RNA gene, complete sequence. ACCESSION AF026054 NID g2564937 KEYWORDS . SOURCE Sirodotia huillensis. ORGANISM Sirodotia huillensis Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Sirodotia. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Sirodotia huillensis" /db_xref="taxon:67913" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 426 a 382 c 520 g 437 t BASE COUNT 426 a 382 c 520 g 437 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagu-a-auu ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-ccg agcugu--g- cg-c-(guaa u--)gcgugc ggcgc----- 1801 ---------- --------g- gggc-g---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uucacu--- ---------- ---------- ---)guugcg ggug------ ---------- 2221 ---ugucggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----u augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agc-uguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----g-cCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaaa-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- acu-uggga- cugc-ugcg- aucg-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgcg-gug -ggaa-|cuu -guccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Sir.suecic 5903 bp RNA RNA 05-NOV-1997 DEFINITION Sirodotia suecica.. ACCESSION No information KEYWORDS No information. SOURCE Sirodotia suecica. ORGANISM Sirodotia suecica. REFERENCE 1 (bases 1 to 2340) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T .J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026053 LOCUS AF026053 1765 bp DNA PLN 05-NOV-1997 DEFINITION Sirodotia suecica 18S ribosomal RNA gene, complete sequence. ACCESSION AF026053 NID g2564936 KEYWORDS . SOURCE Sirodotia suecica. ORGANISM Sirodotia suecica Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Sirodotia. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Sirodotia suecica" /db_xref="taxon:67914" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 425 a 384 c 521 g 435 t BASE COUNT 425 a 384 c 521 g 435 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagu-a-auu ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-ccg agcugu--g- cg-c-(guaa u--)gcgugc ggcgc----- 1801 ---------- --------g- gggc-g---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uucacu--- ---------- ---------- ---)guugcg ggug------ ---------- 2221 ---ugccggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----u augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agc-uguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----g-cCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- acu-uggga- ccgc-ugcg- aucg-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgcg-gug -ggaa-|cuu -guccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Sph.corono 5903 bp RNA RNA 11-JAN-191 DEFINITION Sphaerococcus coronopifolius. ACCESSION No information KEYWORDS No information. SOURCE Sphaerococcus coronopifolius. ORGANISM Sphaerococcus coronopifolius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09622 LOCUS SCU09622 1775 bp DNA PLN 07-DEC-1994 DEFINITION Sphaerococcus coronopifolius small-subunit rRNA gene. ACCESSION U09622 KEYWORDS ribosomal RNA small subunit. SOURCE Sphaerococcus coronopifolius. ORGANISM Sphaerococcus coronopifolius Eukaryotae; Hyperchondria; Eukaryote crown group; Rhodophyta; Florideophyceae; Gigartinales; Sphaerococcaceae; Sphaerococcus. REFERENCE 1 (bases 1 to 1775) AUTHORS Saunders,G.W. and Kraft,G.T. TITLE Small-subunit rRNA gene sequences from representatives of selected families of the Gigartinales and Rhodymeniales (Rhodophyta) I: Evidence for the Plocamiales ord. nov JOURNAL Can. J. Bot. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1775) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (12-MAY-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, Australia STANDARD full automatic COMMENT NCBI gi: 595314 FEATURES Location/Qualifiers source 1..1775 /organism="Sphaerococcus coronopifolius" /isolate="VOUCHER GWS-G0089" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1775 /product="small-subunit rRNA" primer_bind complement(1748..1775) /note="PCR 3' end primer" BASE COUNT 421 a 380 c 536 g 438 t ORIGIN BASE COUNT 421 a 380 c 536 g 438 t 4128 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaguga-auu ---------- -gu-a-caac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaacgac 301 u>ACUUGG-A UACCCGUAG( -U-AACU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU G-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)C 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CAAUAGAGG- -GCCC(---- ----gau)GG GU-UU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAG C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gagguu-ggc g-ggcg-acu uggggc--g- uc-c-(ucac ---)ggacgg uuuca----- 1801 ---------- ------g-g- ucgg-c---- ---------u gccuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggggggc--- ccaguggagc 2161 (uucacu--- ---------- ---------- ---)gcguca cugu------ ---------- 2221 ---ggucgcu --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-A-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 cuguu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UGUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GUA-CGGGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GGCGG-AAG- A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --gggau-cg ggc-g-g-ga cu--(---gu aauuu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-gc-ccg-g ca-cccu--- ---------- ----ucGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAGCUAGGcg c--cgcuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu agcgaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uuGC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGG----- ---------- 5281 ---(------ ----)[ucaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug ugc(gaga-) gcgcu----u cccaau-cuc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUCGAGGCU( UGCAAUUA)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CAC-GGG (-UCAUCAU- )CCCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- ccu-ugggg- ggga-ugga- ugga-cugug ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cacg-gac-- 5761 cgucug-gcc -cgaa-|cuu -ggucaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Spon.yendo 5903 bp RNA RNA 16-DEC-1996 DEFINITION Spongites yendoi.. ACCESSION No information KEYWORDS No information. SOURCE Spongites yendoi. ORGANISM Spongites yendoi. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U60948 LOCUS SYU60948 1712 bp DNA PLN 16-DEC-1996 DEFINITION Spongites yendoi nuclear 18S rRNA gene, partial sequence. ACCESSION U60948 NID g1732172 KEYWORDS . SOURCE Spongites yendoi. ORGANISM Spongites yendoi Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Corallinoideae; Spongites. REFERENCE 1 (bases 1 to 1712) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1712) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1712 /organism="Spongites yendoi" /strain="Holbaaipunt, Cape Hangklip, South Africa" rRNA <1..>1712 /product="18S rRNA" BASE COUNT 426 a 358 c 478 g 450 t BASE COUNT 426 a 358 c 478 g 450 t 4191 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~U GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguua-uau ---------- -ga-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 agga<----- ---------- ---------- ---------- ---------- -----uauac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -accucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGAUA- 1141 AG(-GUAGUG U)CUU-AUCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCA-G( ---acu--)C 1321 UGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAGUAGGGG- -AUCC(---- ----uau)GG GU-CU-UCUA A-CCGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggc g-guuc-cgg ggguga-gg- cg-c-(gucg u--)gcgcac gcucug---- 1801 ---------- ------c-a- ggag-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 u--------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uu cgcgucg--g augagggcug 2161 (uuuauu--- ---------- ---------- ---)cgguaa cguc------ ---------- 2221 ---cgcacgc a-------ac cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AGAA--A 2461 AUCAGAGUGC UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUGUAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCU|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAA- GGC-UGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--UGUAU UUCGGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCCGA-AAG- A-CAAACU-G CUGC(-GAAA )--GC|G--- UCUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g ca-cccu--- ---------- ----ccGA(- 3661 GAAA-)UCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGAgg c--uauuauc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------cCU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GUG-G -G-C(----- 5041 --GUCUA-)G CCCA-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ua cgc(gaga-) gcuuu----u ccuaau-cuu --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGACGGU( UGCAAUUU)U CCGUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AA-CGC-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- ucua-agcg- gaaa-agacg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- cgcu-uuu-- 5761 uuuguu-ggg -agaa-|cuc -agucgaacc uu-auc-a-u uu~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Spor.durum 5903 bp RNA RNA 16-DEC-1996 DEFINITION Sporolithon durum.. ACCESSION No information KEYWORDS No information. SOURCE Sporolithon durum. ORGANISM Sporolithon durum. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61254 LOCUS SDU61254 1638 bp DNA PLN 16-DEC-1996 DEFINITION Sporolithon durum nuclear 18S rRNA gene, partial sequence. ACCESSION U61254 NID g1732182 KEYWORDS . SOURCE Sporolithon durum. ORGANISM Sporolithon durum Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Sporolithaceae; Sporolithon. REFERENCE 1 (bases 1 to 1638) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1638) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1638 /organism="Sporolithon durum" /strain="Port MacDonnell, South Australia" rRNA <1..>1638 /product="18S rRNA" BASE COUNT 394 a 332 c 449 g 398 t 65 others BASE COUNT 394 a 332 c 449 g 398 t 4330 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ug-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaacuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 CCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-G( ---aca--)U 1321 CGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----gau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAUGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-guuc-cgc ggggac--g- cg-c-(guug a--)gcgugg guccug---- 1801 ---------- ------u-c- gggg-c---- ---------u gcuuuc---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggacgug--- cacaggcggc 2161 (uuugcu--- ---------- ---------- ---)gucggc ugug------ -------uuu 2221 uuuuuacguc --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGA-----c 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- aUUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CAAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCUGCG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 GCAGG-AACG A-CAAACG-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-ca ggc-gug-ga au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-cug-g ca-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[ngg-aca 4081 uagu-gagga uu-----gac aga(uunnnn n-n)------ nnnnn----- nnn-nnnn-n 4141 nnnnnn---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|NN-NN- NNN-N-NNNN |NNN|NN-NN NNN|NNNNN- N|NNN(-NNN 4261 N-)NNN-UC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--uauuacc a-------(u uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu ggguagugag uuuuu----- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- --gugacCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCA-G -A-C(----- 5041 --GUCUA-)G UCUN-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ucag cgggugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u ccuaau-ccc --caaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUAGACGGU( UGCAAUUU)U CCGUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGC-GGG (-UCAUCAU- )CCCAC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCG~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Syn.patena 5903 bp RNA RNA 16-DEC-1996 DEFINITION Synarthrophyton patena.. ACCESSION No information KEYWORDS No information. SOURCE Synarthrophyton patena. ORGANISM Synarthrophyton patena. REFERENCE 1 (bases 1 to 2340) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U61255 LOCUS SPU61255 1662 bp DNA PLN 16-DEC-1996 DEFINITION Synarthrophyton patena nuclear 18S rRNA gene, partial sequence. ACCESSION U61255 NID g1732183 KEYWORDS . SOURCE Synarthrophyton patena. ORGANISM Synarthrophyton patena Eukaryotae; mitochondrial eukaryotes; Rhodophyta; Florideophyceae; Corallinales; Corallinaceae; Melobesioideae; Synarthrophyton. REFERENCE 1 (bases 1 to 1662) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Molecular systematics of coralline red algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1662) AUTHORS Bailey,J.C. and Chapman,R.L. TITLE Direct Submission JOURNAL Submitted (19-JUN-1996) Plant Biology, Louisiana State University, 502 Life Sciences Building, Baton Rouge, LA 70803-1705, USA FEATURES Location/Qualifiers source 1..1662 /organism="Synarthrophyton patena" /strain="Beachport, South Australia" rRNA <1..>1662 /product="18S rRNA" BASE COUNT 407 a 334 c 450 g 428 t 43 others BASE COUNT 407 a 334 c 450 g 428 t 4284 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 -AAA|-GACU AA-GCCAUGC A-AGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguga-uuc ---------- -ua-a-ugac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- aau-aauu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- --uaaccuac 301 u>AUACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU A-GAUGGUA- 1141 AG(-GUAGUG U)CUU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGACU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCGG-G( ---auu--)C 1321 CCGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -ACCC(---- ----uau)GG GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGC -UAAA--CAG C-----UU-A U-CGA-GAAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu a-guuc-cgg gagugu--g- cg-c-(gucg u--)gcgcgu gcuucg---- 1801 ---------- ------c-a- gggg-c---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----guggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------c augcguc-ag augaggcgac 2161 (uuuauu--- ---------- ---------- ---)guugaa cguu------ ---------- 2221 --uguacgca --------ac cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUACAU-UAG CAUGGAA|UA -AUUGAA-UA -GGA-----c 2581 ucggu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------UAU- GGC-CGAGUA A--UGAUU-N NN--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNNN|NNNN ---------- 3001 --NNNNNNNN NN|--NNNNN NNNNNNN-NN -NNNN(GU-G AAA---)UUC U-UGGA-U-U 3061 UCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG GAC|UG|--- 3421 --GGgau-cg ggc-gag-ga au--(----u gcgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ccg-g nn-nncu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[agg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGGgg c--uacuacc g-------(c uuu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uggu aguacgu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uacCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGCU ACACU--G-A GUGGA----- ---------- 5281 ---(------ ----)[ucag cggguca--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----ggu-ug cac(gaaa-) guguu----u ccuaau-cuu --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGAU-G-GGG AUUGAGGGU( UGCAAUUU)U CCCUCAUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAU- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- cuu-uggga- uug~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Tho.violac 5903 bp RNA RNA 05-NOV-1997 DEFINITION Thorea violacea.. ACCESSION No information KEYWORDS No information. SOURCE Thorea violacea. ORGANISM Thorea violacea. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026042 LOCUS AF026042 1916 bp DNA PLN 05-NOV-1997 DEFINITION Thorea violacea 18S ribosomal RNA gene, complete sequence. ACCESSION AF026042 NID g2564925 KEYWORDS . SOURCE Thorea violacea. ORGANISM Thorea violacea Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Thoreaceae; Thorea. REFERENCE 1 (bases 1 to 1916) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1916) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1916 /organism="Thorea violacea" /db_xref="taxon:67961" primer_bind 1..20 rRNA 1..1916 /product="18S rRNA" primer_bind complement(1889..1916) BASE COUNT 467 a 392 c 545 g 512 t BASE COUNT 467 a 392 c 545 g 512 t 3987 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaguaa-uuu ---------- -uu-a-cgac gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augc<----- ---------- ---------- ---------- ---------- --uaacuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|guuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUG-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGAGG- -GCGU(---- ---uucu)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggc g-cggc-cgg cgcugu--g- cg-c-(guaa au-)gcgugc ggcguuaaag 1801 aaaaaauuua uuuuuuuuc- gggc-g---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcgac--- acgugguggc 2161 (uugauu--- ---------- ---------- ---)guugcu gcgg------ ---------- 2221 ----gucggc --------gc cacu------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGUC-G-UGA AUACGU-UAG CAUGGGA|AA -AUGGAA-UA -GGA-----c 2581 uuggu----- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- AGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-a-gc au--(----u acgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gu-ccg-g aa-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--uguuaca ca------(u guu----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ugug uagcucagaa gcaauagagg uuuuuucuuu 4681 ucuuuucuuu ucuuucuuuu uuuccuuuga gcaauugaag ggggagaggu uugaaaaagg 4741 aauggaacgg agacuccuua cucauguugu uuugugcUC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u ccuaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagg-- cuu-uggga- uugc-ugcg- aucg-gagug ---------- ---------- 5701 -------(uu ua----)--- ---------- ---------- ---------- cgcu-cug-- 5761 gccgcg-gug -aaaa-|cuu -auccgaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS Tuo.americ 5903 bp RNA RNA 05-NOV-1997 DEFINITION Tuomeya americana.. ACCESSION No information KEYWORDS No information. SOURCE Tuomeya americana. ORGANISM Tuomeya americana. REFERENCE 1 (bases 1 to 2340) AUTHORS .J. Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T TITLE rbcL and 18S ribosomal RNA gene sequences Phylogeny of the Batrachospermales (Rhodophyta) inferred from JOURNAL J. Phycol. 33 (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF026055 LOCUS AF026055 1765 bp DNA PLN 05-NOV-1997 DEFINITION Tuomeya americana 18S ribosomal RNA gene, complete sequence. ACCESSION AF026055 NID g2564938 KEYWORDS . SOURCE Tuomeya americana. ORGANISM Tuomeya americana Eukaryotae; Rhodophyta; Florideophyceae; Batrachospermales; Batrachospermaceae; Tuomeya. REFERENCE 1 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Phylogeny of the Batrachospermales (Rhodophyta) inferred from rbcL and 18S ribosomal RNA gene sequences JOURNAL J. Phycol. 33 (1997) In press REFERENCE 2 (bases 1 to 1765) AUTHORS Vis,M.L., Saunders,G.W., Sheath,R.G., Dunse,K. and Entwisle,T.J. TITLE Direct Submission JOURNAL Submitted (19-SEP-1997) Biology, University of New Brunswick, Fredericton, N.B. E3B 6E1, Canada FEATURES Location/Qualifiers source 1..1765 /organism="Tuomeya americana" /db_xref="taxon:67916" primer_bind 1..20 rRNA 1..1765 /product="18S rRNA" primer_bind complement(1738..1765) BASE COUNT 422 a 383 c 522 g 438 t BASE COUNT 422 a 383 c 522 g 438 t 4138 others ORIGIN 1 |~~~~~~~~~ ~~~~C-ACCU GGU(UGA)UC CU|GCCAGU- G-GU-A-UAU --GCUUGUCU 61 CAAG|-GACU AA-GCCAUGC A-AGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagu-a-auu ---------- -uu-a-cgac aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CGGU AAAA-cagc- uau-aguu-- ----ucuucg 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucguuc -aa|auuucu ga|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG U)CUU-ACCA U-|GGUUU-U GAC|GGGU-A A-CGGA|CCG -U-(GGGU-) 1201 GCG-GGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUAGGGG- -GCGU(---- ---uuau)AC GU-CU-UCUA A-UUGGAAU- 1501 ------GAGA ----ACAAGG -UAAA--CAG C-----UU-A U-CGA-GGAU C---->CAGC 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUGU 1621 A-AGCGUA|U ACCAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggu g-cgcg-ccg ggcugu--g- cg-c-(guag u--)gcgugc ggcg------ 1801 ---------- ------c-g- gggc-g---- ---------u gcuuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- gggcggc--- cgcucguggc 2161 (uucacu--- ---------- ---------- ---)guugcg ggug------ ---------- 2221 ---ugccggc --------gc cacc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------UU UGCC-G-UGA AUACAU-UAG CAUGGAA|UA -AUAGAA-UA -GGA-----c 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -aCC|-UAUU 2821 -UU-GUUGGU -UU-GU---- ------GAG- GGC-CGAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--UGUAU UCCGGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GCCGG-AAG- A-CAAACC-G CUGC(-GAAA )--GC|G--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UU--ACU-AU AAACGAUGAG AAC|UG|--- 3421 --gggau-cg ggc-g-g-gc au--(----u augau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gu-ccg-g ga-cccu--- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gCUU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -UCAC-CGGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggu---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAGCGAG ACCUG-GG|- ---------- 4321 ------(--- --)[CGU-GC UAACUAGGgg c--cguuacc --------(a uu-----)-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ggu agc-uguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----g-cCC- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGACG]- --|------- ---------- GACU-GCG-G -G-C(----- 5041 --GUCUA-)G UCCG-C-GGA AGCU-CCAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A GCGGA----- ---------- 5281 ---(------ ----)[ccaa cggguga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ----gga-ug cgc(gaga-) gcguu----u cccaau-ccc --uaaa]--- ---------- 5461 -------ucc gcu-c-g--- uGCU-G-GGG AUAGAGGCU( UGCAAUUU)U CCCUCUUG-A 5521 ACGAGG-AAU A--CCUUGUA AG-CGU-GGG (-UCAUCAG- )CCCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGGUCC- 5641 ggu-gagg-- acu-uggga- cugc-ugcg- auug-ggg-- ---------- ---------- 5701 -------(uu cauu--)--- ---------- ---------- ---------- --cu-cug-- 5761 gccgcg-gug -ggaa-|cuu -guccaaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCu~~~~ ~~~~~~~~|| ||| // LOCUS (3)-Viridi 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (4)-Chloro 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Chlo.ell.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X63520 LOCUS CHLRRNA 2239 bp ds-DNA PLN 29-FEB-1992 DEFINITION C.ellipsoidea small subunit ribosomal RNA ACCESSION X63520 KEYWORDS small subunit ribosomal RNA. SOURCE Chlorella ellipsoidea DNA. ORGANISM Chlorella ellipsoidea Eukaryota; Fungi; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 2239) AUTHORS Huss,V.A., Seidel,B. and Kessler,E. JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=211-1a; From EMBL entry CERRNA; dated 19-FEB-1992. FEATURES Location/Qualifiers primer_bind 1..21 /note="PCR amplification primer" rRNA 1..2239 /product="small subunit rRNA" intron 1770..2210 /note="Group I self-splicing" /evidence=EXPERIMENTAL primer_bind 2215..2239 /note="PCR amplification primer" BASE COUNT 567 a 499 c 612 g 561 t ORIGIN BASE COUNT 458 a 384 c 488 g 468 t 4105 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuc-)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga u-gggu-ucc gucggu--c- cg-ccg-(uu u-)cgg-ugu ---------- 1801 ---------- -----gc-a- -cugac-ggc -g------cc uaucuu-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uuaacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----ag-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-ug uu--(----u auugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-ca-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cggucga --------uu uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ucggcug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Guu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGUU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucc----g gguaau-cug -cgaaa]--- ---------- 5461 -------cug cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGUGcu- 5641 ggu-gaag-- cgu-ccgga- cugg-uaac- aggu-gacgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ccgc-ugc-- 5761 cugcuu-ccg -ggaa-|guu -cguuaaacc cu-ccc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.ell.2 5903 bp RNA RNA 15-JAN-1994 DEFINITION Chlorella ellipsoidea. str. IAM C-87,; . ACCESSION D13324 KEYWORDS . SOURCE Chlorella ellipsoidea. str. IAM C-87,. ORGANISM Chlorella ellipsoidea. REFERENCE 1 (bases 1 to 2442) AUTHORS Aimi,T., Yamada,T. and Murooka,Y. TITLE green alga Chlorella ellipsoidea C-87 A group I intron in the nuclear small subunit rRNA gene of the JOURNAL Gene 139, 65-71 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: D13324 Submitted (01-OCT-1992) to DDBJ by: Takashi Yamada Dept. of Fermentation Technology Faculty of Engineering Hiroshima University 1-4-1 Kagamiyama Higashi Hiroshima 724 Japan Phone: 0824-22-7111 Fax: 0824-22-7191. BASE COUNT 457 a 385 c 490 g 472 t 4099 others ORIGIN 1 |--------- ---guuACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuc-)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga u-gggu-ucc gucggu--c- cg-ccg-(uu u-)cgg-ugu ---------- 1801 ---------- -----gc-a- -cugac-ggc -g------cc uaucuu-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uuaacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----ag-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-ug uu--(----u auugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-ca-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA--UCa- -aAGUU-UUU GGGU--U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cggucga --------uu uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ucggcug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Guu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGUU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucc----g gguaau-cug -cgaaa]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGUGcu- 5641 ggu-gaag-- cgu-ccgga- cugg-uaac- aggu-gacgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ccgc-ugc-- 5761 cugcuu-ccg -ggaa-|guu -cguuaaacc cu-ccc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uugaa--- -------~|| ||| // LOCUS Chlo.hom 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73996 ID CH18SRRNA standard; DNA; PLN; 1793 BP. XX AC X73996; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.homosphaera gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella homosphaera OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-1793 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-1793 RA Huss V.A.R., Hirmer M., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT primer_bind 1..21 FT /note="PCR amplification 5'-primer" FT rRNA 1..1793 FT /note="18S small subunit" FT source 1..1793 FT /organism="Chlorella homosphaera" FT /strain="CCAP 211/8e" FT primer_bind complement(1769..1793) FT /note="PCR amplification 3'-primer" XX SQ Sequence 1793 BP; 447 A; 393 C; 499 G; 453 T; 1 other; BASE COUNT 447 a 393 c 499 g 453 t 4111 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acuuu----c 301 u>ACUcGGAA UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCGC(---- ----uuc)GC GU-CU-GGCA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg c-gugu-cgc guuggu--c- cg-cc--(aa u-)-gg-uga ---------- 1801 ---------- -----gu-a- c-uugc-guc ------ggcg cgccuu-cc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uucacu--- ---------- ---------- ---)gucugg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C--GA AUACUU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----ag-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-g-cg uu--(---ga uuuaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-cca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cug-ucg c--------u ccg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gcggcug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ccaa-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGCGU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucc----g gguaau-cuu -uraaa]--- ---------- 5461 -------acg cgu-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGcu- 5641 ggu-gaag-- ugu-ucgga- uugg-cgag- aggcggug-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -cac-ugu-- 5761 cuccug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.lob 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X63504 LOCUS CHLSSRRNB 1796 bp ds-DNA PLN 13-MAR-1992 DEFINITION C.lobophora small subunit ribosomal RNA ACCESSION X63504 KEYWORDS 16S-like rRNA; ribosomal rna; small subunit rRNA. SOURCE Chlorella lobophora DNA. ORGANISM Chlorella lobophora Eukaryota; Fungi; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1796) AUTHORS Huss,V.A., Sogin,M.L., Kessler,E. and Seidel,B. JOURNAL Unpublished (1991) STANDARD full automatic COMMENT *source: strain=750-I; See also X63505 From EMBL entry CLSSRRNA; dated 19-DEC-1991. FEATURES Location/Qualifiers misc_feature 1..21 /note="PCR amplification primer" rRNA 1..1796 /product="small subunit rRNA" misc_feature 1772..1796 /note="PCR amplification primer" BASE COUNT 451 a 396 c 495 g 453 t 1 others ORIGIN BASE COUNT 451 a 396 c 495 g 453 t 4108 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUYU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU U-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-ggga-ccu gccggu--c- cg-ccguuuc ggugug-cac ---------- 1801 ---------- ------u-g- gcag------ -gg-----cc caccuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUca c--gauugg- ---------c ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagucg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuu -cgaaa]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- cgug-ggcgg ---------- ---------- 5701 -------(cc u-----)--- ---------- ---------- ---------- ccgc-ucu-- 5761 cggccg-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.lut.A 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73997 ID CLA18SRNA standard; DNA; PLN; 2150 BP. XX AC X73997; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.luteoviridis (A) gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella luteoviridis OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-2150 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-2150 RA Huss V.A.R., Hirmer M., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA join(1..563,914..2150) FT /note="18S small subunit" FT exon 1..563 FT /number=1 FT source 1..2150 FT /organism="Chlorella luteoviridis" FT /strain="SAG 211-2a" FT /clone="A" FT intron 564..913 FT /number=1 FT /note="group I intron" FT exon 914..2150 FT /number=2 FT primer_bind complement(2126..2150) FT /note="PCR amplification 3'-primer" XX SQ Sequence 2150 BP; 520 A; 499 C; 618 G; 512 T; 1 other; BASE COUNT 447 a 408 c 499 g 445 t 4104 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- acu-aauu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u ugccu--ugc 301 u>ACUCGG-A UAGCCGUAG( -U-AACA)-U AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U GAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uauc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -CAAA--AUC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga c-gggg-cug accggu--c- ca-cc--(uc uc)-gg-ugc ---------- 1801 ---------- -----gc-a- -cuggu-cgu ------gccg cgucuc-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcugcugggc 2161 (uucauu--- ---------- ---------- ---)guccgg cacc------ ---------- 2221 ----cggag- --------uc gacga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUCACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACGU-UAG CAUGGAA|UG -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|-UAUC 2821 -CU-GUCGGU -CU-GU---- -----GA-ga CCG-GA-GUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCG CU|--CGUAU UUCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUCGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UUGAAGAGG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CC-U -CCUAA|UCU CAu-ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-g-ug uc--(---ca aucaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-ccg-g ca-ccuc--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GAGCA- -CCAC-CAGU ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AACUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaaa g-c)------ ucuuu----- cuu-gauu-c 4141 uguggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cguucgg c--------c uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gccggcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cugcg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --gacua-)g ccga-U-GGA AGUG-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGUU ACACU--G-A CGCAA----- ---------- 5281 ---(------ ----)[ucaa caagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug acc(gaga-) ggucc----g gguaau-cuu -guaaa]--- ---------- 5461 -------gug cgu-C-G--- UGAU-G-GGG CUAGACUCU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU A--UCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCUC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGUGcu- 5641 ggu-gaag-- cgu-ucgga- uugg-ucgc- auccggugg- ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- ccgc-cgu-- 5761 ucgcag-ccg -agaa-|guu -cguuaaacc cu-ccc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C YGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.lut.B 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73998 ID CLB18SRNA standard; DNA; PLN; 2569 BP. XX AC X73998; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.luteoviridis (B) gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella luteoviridis OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-2569 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-2569 RA Huss V.A.R., Hirmer M., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA join(1..563,912..1622,2044..2569) FT /note="18S small subunit" FT primer_bind complement(2545..2569) FT /note="PCR amplification 3'-primer" FT primer_bind 1..21 FT /note="PCR amplification 5'-primer" FT exon 1..563 FT /number=1 FT source 1..2569 FT /organism="Chlorella luteoviridis" FT /strain="SAG 211-2a" FT /clone="B" FT intron 564..911 FT /number=1 FT /note="group I intron" FT exon 912..1622 FT /number=2 FT intron 1623..2043 FT /number=2 FT /note="group I intron" FT exon 2044..2569 FT /number=3 XX SQ Sequence 2569 BP; 614 A; 612 C; 747 G; 595 T; 1 other; BASE COUNT 447 a 409 c 499 g 445 t 4103 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- acu-aauu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u ugccu--ugc 301 u>ACUCGG-A UAGCCGUAG( -U-AACA)-U AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U GAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uauc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -CAAA--AUC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga c-gggg-cug accggu--c- ca-cc--(uc uc)-gg-ugc ---------- 1801 ---------- -----gc-a- -cuggu-cgu ------gccg cgucuc-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcugcugggc 2161 (uucauu--- ---------- ---------- ---)guccgg cacc------ ---------- 2221 ----cggag- --------uc gacga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUCACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACGU-UAG CAUGGAA|UG -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|-UAUC 2821 -CU-GUCGGU -CU-GU---- -----GA-ga CCG-GA-GUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCG CU|--CGUAU UUCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUCGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UUGAAGAGG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CC-U -CCUAA|UCU CAu-ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-g-ug uc--(---ca aucaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-ccg-g ca-ccuc--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GAGCA- -CCAC-CAGU ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AACUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaaa g-c)------ ucuuu----- cuu-gauu-c 4141 uguggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU+G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cguucgg c--------c uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gccggcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cugcg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --gacua-)g ccga-U-GGA AGUG-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGUU ACACU--G-A CGCAA----- ---------- 5281 ---(------ ----)[ucaa caagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug acc(gaga-) ggucc----g gguaau-cuu -guaaa]--- ---------- 5461 -------gug cgu-C-G--- UGAU-G-GGG CUAGACUCU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU A--UCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCUC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGUGcu- 5641 ggu-gaag-- cgu-ucgga- uugg-ucgc- auccggugg- ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- ccgc-cgu-- 5761 ucgcag-ccg -agaa-|guu -cguuaaacc cu-ccc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.min.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56102 ID CMRRN16L standard; DNA; PLN; 1795 BP. XX AC X56102; XX DT 21-FEB-1991 (Rel. 27; Last updated; Version 1) DT 21-FEB-1991 (Rel. 27; Created) XX DE C. minutissima 16s-like small subunit rRNA. XX KW 16S-like ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella minutissima OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RB 1-1795 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) on tape to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORAORY, CENTER FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX RN [2] RB 1-1795 RA Huss V.A.R., Sogin M.L.; RT "Phylogenetic position of some Chlorella species within the RT Chlorococcales based upon complete small-subunit ribosomal RNA RT sequences."; RL J. Mol. Evol. 31:432-442(1990). XX CC See also X56099, X56100, X56101, X56102, X56103, X56104 and X56105. CC Ambiguity of nucleotides may be caused by PCR errors or by CC microheterogeneity within the 16s-like rRNA genes. XX FH Key Location/Qualifiers FH FT misc_feature 1..21 FT /note="PCR amplification primer" FT misc_feature 1771..1795 FT /note="PCR amplification primer" FT rRNA 1..1795 FT /product="small subunit rRNA (16s-like)" FT /gene="small subunit rRNA (16s-like)" XX SQ Sequence 1795 BP; 446 A; 392 C; 501 G; 456 T; 0 other; BASE COUNT 446 a 392 c 501 g 456 t 4108 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCCU(---- ---uuc-)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-cac gucggu--c- cg-ccguuuc ggugug-cac ---------- 1801 ---------- ------u-g- gcgg------ -gg-----cc caccuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuccuggga 2161 (uucauu--- ---------- ---------- ---)uccugg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-g-ug uu--(---cu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUca c--gucugc- ---------u ccg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gcagucg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcggA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccag-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucag cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug acc(gaga-) ggucc----g gguaau-cuu -ugaau]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- cgug-ggcgg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------c cgcu---g-- 5761 cggcug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.mir 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74000 ID CM18SRRNA standard; DNA; PLN; 2286 BP. XX AC X74000; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.mirabilis gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella mirabilis OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-2286 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-2286 RA Huss V.A.R., Hirmer M., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA join(1..1769,2258..2286) FT /note="18S small subunit" FT primer_bind 1..21 FT /note="PCR amplification 5'-primer" FT exon 1..1769 FT /number=1 FT source 1..2286 FT /organism="Chlorella mirabilis" FT /strain="Andreyeva 748-I" FT intron 1770..2257 FT /number=1 FT /note="group I intron" FT exon 2258..2286 FT /number=2 FT primer_bind complement(2262..2286) FT /note="PCR amplification 3'-primer" XX SQ Sequence 2286 BP; 537 A; 559 C; 670 G; 519 T; 1 other; BASE COUNT 446 a 396 c 498 g 457 t 4106 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacug-cuu ---------- cau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ----uuc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga u-gggu-gcc gucggu--c- cg-ccg-(uu u-)cgg-ugu ---------- 1801 ---------- -----gc-a- -cugac-ggc -------gcc caucuu-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uuaacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CAUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UGAACC-G CUGC(-GAAA )--GC|U--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-ug uu--(---uu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG YC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cgg-ccg g--------u ucuu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccggucg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccgg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Guu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucc----g gguaau-cug -cgaaa]--- ---------- 5461 -------cug cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGUGcu- 5641 ggu-gaag-- cgu-ccgga- cugg-cggc- aggcggcgg- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ccgc-ugu-- 5761 cugccg-ccg -ggaa-|guu -cguugaacc cu-ccc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.pro 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56101 ID CPRRN16L standard; DNA; PLN; 1832 BP. XX AC X56101; XX DT 21-FEB-1991 (Rel. 27; Last updated; Version 1) DT 21-FEB-1991 (Rel. 27; Created) XX DE C. protothecoides 16s-like small subunit rRNA. XX KW 16S-like ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella protothecoides OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RB 1-1832 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) on tape to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORAORY, CENTER FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX RN [2] RB 1-1832 RA Huss V.A.R., Sogin M.L.; RT "Phylogenetic position of some Chlorella species within the RT Chlorococcales based upon complete small-subunit ribosomal RNA RT sequences."; RL J. Mol. Evol. 31:432-442(1990). XX CC See also X56099, X56100, X56101, X56102, X56103, X56104 and X56105. CC Ambiguity of nucleotides may be caused by PCR errors or by CC microheterogeneity within the 16s-like rRNA genes. XX FH Key Location/Qualifiers FH FT misc_feature 1..21 FT /note="PCR amplification primer" FT rRNA 1..1832 FT /product="small subunit rRNA (16s-like rRNA)" FT /gene="small subunit rRNA (16s-like)" FT misc_feature 1807..1832 FT /note="PCR amplification primer" XX SQ Sequence 1832 BP; 444 A; 430 C; 508 G; 450 T; 0 other; BASE COUNT 444 a 430 c 508 g 450 t 4071 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-GA GU|------- |-------(- ---)[----- 121 ---------- --------au aaccug-uuu ---------- -acua-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----ugc 301 u>ACUGGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACCUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU --GUCGGUA- 1141 GG(-AUAGAG G)CCU-ACCG A-|GGUGU-U CAC|GGGU-G A-CGGA|GGA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCCU(---- ---cac-)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ggg g-ggcc-cgg gccggu--c- cu-uuggugc gugggg-uuc ---------- 1801 ---------- ------a-c- cccc-c-c-- -gcccucugc gcacug-gca uu-------- 1861 ccggcgcccc c-cugu---- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugcugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-gc gcuccugggc 2161 (uuugcu--- ---------- ---------- ---)guccgg ggcc------ ---------- 2221 ----cggag- --------uc agcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 -------UCC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACAUGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|-UAUC 2821 -AC-GUUGGU -CU-GU---- -----AA-ga CCG-GA-GUA A--UGAUUGA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-GU AAACGAUGCC GAC|UC|--- 3421 --gggau-cg gug-g-u-cg uu--(---ca uucaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-a c-ca-ccg-g ca-ccuc--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUuu u--gguugcg gu-------u uc-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------acc ccagccuc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gauaA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Cuc-g -g-c(----- 5041 --gacua-)g ccga-G-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACAAU--G-A UGCGG----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaca-) ggccc----g gguaau-cuc -gcaac]--- ---------- 5461 -------ccg cau-c-g--- uGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cagc- ucga-ucgcg g--------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------c cgcg--ac-- 5761 cagcag-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sac.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X63505 LOCUS CHLSSRRNA 1799 bp ds-DNA PLN 24-JAN-1992 DEFINITION C.saccharophila small subunit ribosomal RNA ACCESSION X63505 KEYWORDS 16S-like ribosomal RNA; ribosomal rna; small subunit ribosomal RNA. SOURCE Chlorella saccharophila DNA. ORGANISM Chlorella saccharophila Fungi; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1799) AUTHORS Huss,V.A., Sogin,M.L., Kessler,E. and Seidel,B. JOURNAL Unpublished (1991) STANDARD full automatic COMMENT *source: strain=211-9a; See also X63504 From EMBL entry CSSSRRNA; dated 19-DEC-1991. FEATURES Location/Qualifiers misc_feature 1..21 /note="PCR amplification primer" rRNA 1..1799 /product="small subunit rRNA" misc_feature 1775..1799 /note="PCR amplification primer" BASE COUNT 437 a 406 c 505 g 448 t 3 others ORIGIN BASE COUNT 437 a 406 c 505 g 448 t 4107 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U GAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuuc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg c-gggg-ccu gccggu--c- cg-cc--(uc u-)-gg-ugu ---------- 1801 ---------- -----gc-a- -cuggc-aug -gg-----cu cgccuc-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uuaacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc gacga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACGU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -YU-GU---- -----GG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-g-ug uu--(---cu uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-ccg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-YUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cgcucgg c--------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gccgggcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcagcg CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --gacua-)g ccga-U-GGA AGUG-UGAGG CAAUAA--CR GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGCAA----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug guc(gaga-) gaccc----g gguaau-cuu -guaac]--- ---------- 5461 -------cug cgu-c-G--- UGAU-G-GGG CUAGACUCU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGUGcu- 5641 ggu-gaag-- ccc-uagga- cugg-cggc- cuuu-ggugg ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- ccgc-cga-- 5761 cggucg-ccg -ggaa-|uuc -gguuaaacc cu-ccc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sac.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73991 ID CS18SRRNA standard; DNA; PLN; 2162 BP. XX AC X73991; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.saccharophila gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella saccharophila OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-2162 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-2162 RA Huss V.A.R., Wenzeler P., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA join(1..564,927..2162) FT /note="18S small subunit" FT primer_bind 1..21 FT /note="PCR amplification 5'-primer" FT exon 1..564 FT /number=1 FT source 1..2162 FT /organism="Chlorella saccharophila" FT /strain="SAG 211-9b" FT intron 565..926 FT /number=1 FT exon 927..2162 FT /number=2 FT primer_bind complement(2138..2162) FT /note="PCR amplification 3'-primer" XX SQ Sequence 2162 BP; 518 A; 507 C; 628 G; 504 T; 5 other; BASE COUNT 443 a 411 c 507 g 437 t 4105 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCY-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGU-U GAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuuc)AA GU-CU-GGUG A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg c-gggg-ccc gccggu--c- cg-cc--(gu ca)-gg-ugu ---------- 1801 ---------- -----gc-a- -cuggc-gcg -gg-----cc cgccuu-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccuagac 2161 (uucacu--- ---------- ---------- ---)guccgg gacc------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----GG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-g-ug uu--(---uu aucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGCU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-AGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCCa ---cgggcgg cguc------ -acg-g---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -----ccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccgg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --gacua-)g ccga-U-GGA AGUG-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAA----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggucc----g ggyaau-cuu -cgaaa]--- ---------- 5461 -------cug cau-C-G--- UGAU-G-GGG CUAGACUCU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGUGcu- 5641 ggu-gaag-- cgu-ucgga- uugg-aguc- acucggcgg- ---------- ---------- 5701 -------(cu cg--u-)--- ---------- ---------- ---------- ccgc-cgg-- 5761 cuggca-ccg -agaa-|guu -cguuaaacc cu-ccc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sac.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X63505 ID CSSSRRNA standard; DNA; PLN; 1799 BP. XX AC X63505; XX DT 19-DEC-1991 (Rel. 30, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 8) XX DE C.saccharophila small subunit ribosomal RNA XX KW 16S ribosomal RNA homologue; ribosomal RNA; small subunit rRNA. XX OS Chlorella saccharophila OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RC sequence revised by author 09-JUL-1993 RP 1-1799 RA Huss V.A.R.; RT ; RL Submitted (12-DEC-1991) on tape to the EMBL Data Library by: RL V.A.R. Huss, Institut fuer Botanik und Pharmazeutische Biologie, RL Universitaet Erlangen, Staudstr. 5, W-8520 Erlangen, FRG XX RN [2] RP 1-1799 RA Huss V.A.R., Sogin M.L., Kessler E., Seidel B.; RT ; RL Unpublished. XX CC See also X63504 XX FH Key Location/Qualifiers FH FT source 1..1799 FT /organism="Chlorella saccharophila" FT /strain="211-9a" FT misc_feature 1..21 FT /note="PCR amplification primer" FT rRNA 1..1799 FT /product="small subunit rRNA" FT misc_feature 1775..1799 FT /note="PCR amplification primer" XX SQ Sequence 1799 BP; 437 A; 406 C; 505 G; 448 T; 3 other; BASE COUNT 437 a 406 c 505 g 448 t 4107 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U GAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuuc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg c-gggg-ccu gccggu--c- cg-cc--(uc u-)-gg-ugu ---------- 1801 ---------- -----gc-a- -cuggc-aug -gg-----cu cgccuc-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uuaacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc gacga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACGU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -YU-GU---- -----GG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-g-ug uu--(---cu uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-ccg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUU-YUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cgcucgg c--------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gccgggcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcagcg CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --gacua-)g ccga-U-GGA AGUG-UGAGG CAAUAA--CR GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGCAA----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug guc(gaga-) gaccc----g gguaau-cuu -guaac]--- ---------- 5461 -------cug cgu-C-G--- UGAU-G-GGG CUAGACUCU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGUGcu- 5641 ggu-gaag-- ccc-uagga- cugg-cggc- cuuuggugg- ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- ccgc-cga-- 5761 cggucg-ccg -ggaa-|uuc -gguuaaacc cu-ccc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sor.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X62441 ID CS16SLSSR standard; DNA; PLN; 1797 BP. XX AC X62441; XX DT 21-OCT-1991 (Rel. 29, Last updated, Version 3) DT 21-OCT-1991 (Rel. 29, Created) XX DE C.sorokiniana 16S-like small subunit ribosomal RNA gene XX KW 16S-like rRNA; small subunit ribosomal DNA; KW small subunit ribosomal RNA gene. XX OS Chlorella sorokiniana OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-1797 RA Huss V.A.R., Seidel B., Sogin M.L., Kessler E.; RT ; RL Unpublished. XX RN [2] RP 1-1797 RA Huss V.A.R.; RT ; RL Submitted (01-OCT-1991) on tape to the EMBL Data Library by: RL V.A.R. Huss, Institut fuer Botanic und Pharm. Biol., Universitaet RL Erlangen, Staudtstr 5, W-8520 Erlangen, Germany XX CC *source: strain=211-8k (Type strain); XX FH Key Location/Qualifiers FH FT rRNA 1..1797 FT /note="small subunit rRNA" FT misc_feature 1..21 FT /note="PCR amplification primer" FT misc_feature 1773..1797 FT /note="PCR amplification primer" XX SQ Sequence 1797 BP; 449 A; 397 C; 498 G; 452 T; 1 other; BASE COUNT 449 a 397 c 498 g 452 t 4107 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-ggga-ccu gccggu--c- cg-ccguuuc ggugug-cac ---------- 1801 ---------- ------u-g- gcag------ -gg-----cc caccuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[ccu-gc uaaauaguca c--gguugg- ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgga- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagcyu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- cggg-ggcgg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------c cgcu-c-u-- 5761 cggccg-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sor.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73993 ID CS18SRNA standard; DNA; PLN; 2689 BP. XX AC X73993; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.sorokiniana gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella sorokiniana OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-2689 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-2689 RA Huss V.A.R., Frank C., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA join(1..394,860..1731,2160..2689) FT /note="18S small subunit" FT primer_bind 1..21 FT /note="PCR amplification 5'-primer" FT exon 1..394 FT /number=1 FT source 1..2689 FT /organism="Chlorella sorokiniana" FT /strain="SAG 211-40a" FT intron 395..859 FT /number=1 FT exon 860..1731 FT /number=2 FT intron 1732..2159 FT /number=2 FT exon 2160..2689 FT /number=3 FT primer_bind 2665..2689 FT /note="PCR amplification 3'-primer" XX SQ Sequence 2689 BP; 647 A; 635 C; 796 G; 609 T; 2 other; BASE COUNT 449 a 399 c 498 g 450 t 4107 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U+G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-ccc gccggu--c- cg-ccg-uuu -cggug-ugc ---------- 1801 ---------- ------a-c- uggcgg-ga- -------ccc accuug-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--gguugg- ---------c ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- cgggggcgg- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ccgc-ucu-- 5761 cggccg-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sor.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74001 ID CSO18SRNA standard; DNA; PLN; 1797 BP. XX AC X74001; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.sorokiniana gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella sorokiniana OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-1797 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-1797 RA Huss V.A.R., Frank C., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT primer_bind 1..21 FT /note="PCR amplification 5'primer" FT rRNA 1..1797 FT /note="18S small subunit" FT source 1..1797 FT /organism="Chlorella sorokiniana" FT /strain="Prag A14" FT primer_bind complement(1773..1797) FT /note="PCR amplification 3'primer" XX SQ Sequence 1797 BP; 448 A; 398 C; 499 G; 452 T; 0 other; BASE COUNT 448 a 398 c 499 g 452 t 4106 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-ccu gccggu--c- cg-ccg-uuu -cggug-ugc ---------- 1801 ---------- ------a-c- uggcag-gg- -------ccc accuug-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--gguugg- ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- cgggggcgg- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ccgc-ucu-- 5761 cggccg-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sp.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X72706 ID CSESHRRNA standard; DNA; PLN; 1797 BP. XX AC X72706; XX DT 23-MAR-1993 (Rel. 35, Created) DT 23-MAR-1993 (Rel. 35, Last updated, Version 1) XX DE Chlorella sp. (Esh) gene for ribosomal RNA, small subunit XX KW 16S-like ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella sp. OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-1797 RA Huss V.A.R., Holweg C., Seidel B., Reich V., Rahat M., Kessler E.; RT "There is an ecological basis for host/symbiont specificity in RT Chlorella/Hydra symbioses"; RL Unpublished. XX RN [2] RP 1-1797 RA Huss V.; RT ; RL Submitted (19-MAR-1993) on tape to the EMBL Data Library by: RL V.A.R. Huss, Universitaet Erlangen, Inst. fuer Botanik & RL Pharmazeutishe Biol, Staudtstr. 5, 8520 Erlangen, FRG XX CC *source: strain=symbiont of Hydra viridissima strain Esh; XX FH Key Location/Qualifiers FH FT rRNA <1..>1797 FT /product="small subunit ribosomal RNA" FT misc_feature 1..21 FT /note="PCR amplification primer" FT misc_feature 1772..1797 FT /note="PCR amplification primer" XX SQ Sequence 1797 BP; 448 A; 397 C; 498 G; 452 T; 2 other; BASE COUNT 448 a 397 c 498 g 452 t 4108 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-ccu gccggu--c- cg-ccg-(uu u-)cgg-ugu ---------- 1801 ---------- -----gc-a- -cuggc-agg -g------cc caccuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAYUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---crg-uug g--------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGcu- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- cgggggcgg- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ccgc-ucu-- 5761 cggccg-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sp.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X72707 ID CSHVTRRNA standard; DNA; PLN; 1797 BP. XX AC X72707; XX DT 23-MAR-1993 (Rel. 35, Created) DT 23-MAR-1993 (Rel. 35, Last updated, Version 1) XX DE Chlorella sp. (HvT) gene for ribosomal RNA, small subunit XX KW 16S-like ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella sp. OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RA Huss V.A.R., Holweg C., Seidel B., Reich V., Rahat M., Kessler E.; RT "There is an ecological basis for host/symbiont specificity in RT Chlorella/Hydra symbioses"; RL Unpublished. XX RN [2] RP 1-1797 RA Huss V.; RT ; RL Submitted (19-MAR-1993) on tape to the EMBL Data Library by: RL V.A.R. Huss, Universitaet Erlangen, Inst. fuer Botanik & RL Pharmazeutishe Biol, Staudtstr. 5, 8520 Erlangen, FRG XX CC *source: strain=symbiont of Hydra viridissima strain HvT; XX FH Key Location/Qualifiers FH FT rRNA <1..>1797 FT /product="small subunit ribosomal RNA" FT misc_feature 1..21 FT /note="PCR amplification primer" FT misc_feature 1772..1797 FT /note="PCR amplification primer" XX SQ Sequence 1797 BP; 446 A; 397 C; 500 G; 454 T; 0 other; BASE COUNT 446 a 397 c 500 g 454 t 4106 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAU-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->GAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-ccu gccggu--c- cg-ccg-(uu u)-cgg-ugu ---------- 1801 ---------- -----gc-a- -cuggc-agg -g------cc caccuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cgg-uug g--------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGcu- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- cgggggcgg- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ccgc-ucu-- 5761 cggccg-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sp.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X72708 ID CSJSHRRNA standard; DNA; PLN; 1832 BP. XX AC X72708; XX DT 23-MAR-1993 (Rel. 35, Created) DT 23-MAR-1993 (Rel. 35, Last updated, Version 1) XX DE Chlorella sp. (Jsh) gene for ribosomal RNA, small subunit XX KW 16S-like ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella sp. OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RA Huss V.A.R., Holweg C., Seidel B., Reich V., Rahat M., Kessler E.; RT "There is an ecological basis for host/symbiont specificity in RT Chlorella/Hydra symbioses"; RL Unpublished. XX RN [2] RP 1-1832 RA Huss V.; RT ; RL Submitted (19-MAR-1993) on tape to the EMBL Data Library by: RL V.A.R. Huss, Universitaet Erlangen, Inst. fuer Botanik & RL Pharmazeutishe Biol, Staudtstr. 5, 8520 Erlangen, FRG XX CC *source: strain=symbiont of Hydra viridissima strain Jsh; XX FH Key Location/Qualifiers FH FT rRNA <1..>1832 FT /product="small subunit ribosomal RNA" FT misc_feature 1..21 FT /note="PCR amplification primer" FT misc_feature 1807..1832 FT /note="PCR amplification primer" XX SQ Sequence 1832 BP; 444 A; 429 C; 508 G; 450 T; 1 other; BASE COUNT 444 a 429 c 508 g 450 t 4072 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-GA GU|------- |-------(- ---)[----- 121 ---------- --------au aaccug-uuu ---------- -acua-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----ugc 301 u>ACUGGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACCUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU --GUCGGUA- 1141 GG(-AUAGAG G)CCU-ACCG A-|GGUGU-U CAC|GGGU-G A-CGGA|GGA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCCU(---- ----cac)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ggg g-ggcc-cgg gccggu--cc uu-uggcgcg gugggu-uca ---------- 1801 ---------- -----cg-c- ccccgc-ccu -cugcgcacu ggcauu-ccg gc-------- 1861 gccccccugu ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugcugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g cgcuccuggg 2161 (cuuugc--- ---------- ---------- --)uguccgg ggcc------ ---------- 2221 ----cggag- --------uc agcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 -------UCC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACAUGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|-UAUC 2821 -AC-GUUGGU -CU-GU---- -----AA-ga CCG-GA-GUA A--UGAUUGA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-GU AAACGAUGCC GAC|UC|--- 3421 --gggau-cg gug-g-u-cg uu--(---ca uucaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-a c-ca-ccg-g ca-ccuc--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUu ---ugguugc ggu------u uc-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------accc cagccuug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uaaga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Cuc-g -g-c(----- 5041 --gacua-)g ccga-G-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACAAU--G-A UGCGG----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaca-) ggccc----g gguaau-cuc -gcaac]--- ---------- 5461 -------ccg cau-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUGcu- 5641 ggu-gaag-- ugu-ucgga- uugg-cagc- ucgaucgcgg ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- ccgc-gac-- 5761 cagcag-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sp.4 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73992 ID CSP18SRRA standard; DNA; PLN; 1798 BP. XX AC X73992; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.sp. gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella sp. OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-1798 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-1798 RA Huss V.A.R., Frank C., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT primer_bind 1..21 FT /note="PCR amplification 5'-primer" FT rRNA 1..1798 FT /note="18S small subunit" FT source 1..1798 FT /organism="Chlorella sp." FT /strain="SAG 211-18" FT primer_bind 1774..1798 FT /note="PCR amplification 3'-primer" XX SQ Sequence 1798 BP; 442 A; 402 C; 500 G; 452 T; 2 other; BASE COUNT 442 a 402 c 500 g 452 t 4107 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>AC-CGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg c-gggg-ccu gccggu--c- cg-ccg-(uu u-)cgg-ugu ---------- 1801 ---------- -----gc-a- -cuggc-cgg -g------cc cgccuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------URC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cgg-ccu c--------c ccg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ggggccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug acc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGcu- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- ccggggcgg- ---------- ---------- 5701 -------(uu ca----)--- ---------- ---------- ---------- ccgc-ucu-- 5761 gggcug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.sp.5 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X72854 ID CSSSHRRNA standard; DNA; PLN; 1797 BP. XX AC X72854; XX DT 23-MAR-1993 (Rel. 35, Created) DT 23-MAR-1993 (Rel. 35, Last updated, Version 1) XX DE Chlorella sp. (Ssh) gene for ribosomal RNA, small subunit XX KW 16S-like ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella sp. OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-1797 RA Huss V.A.R., Holweg C., Seidel B., Reich V., Rahat M., Kessler E.; RT "There is an ecological basis for host/symbiont specificity in RT Chlorella/Hydra symbioses"; RL Unpublished. XX RN [2] RP 1-1797 RA Huss V.; RT ; RL Submitted (19-MAR-1993) on tape to the EMBL Data Library by: RL V.A.R. Huss, Universitaet Erlangen, Inst. fuer Botanik & RL Pharmazeutishe Biol, Staudtstr. 5, 8520 Erlangen, FRG XX CC *source: strain=symbiont of Hydra viridissima strain Ssh; XX FH Key Location/Qualifiers FH FT rRNA <1..>1797 FT /product="small subunit ribosomal RNA" FT misc_feature 1..21 FT /note="PCR amplification primer" FT misc_feature 1772..1797 FT /note="PCR amplification primer" XX SQ Sequence 1797 BP; 448 A; 396 C; 499 G; 453 T; 1 other; BASE COUNT 448 a 396 c 499 g 453 t 4107 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-ccu gccggu--c- cg-ccg-(uu u-)cgg-ugu ---------- 1801 ---------- -----gc-a- -cuggc-agg -g------cc caccuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cgguugg ---------u ycg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGU-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGcu- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- cgggggcgg- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ccgc-ucu-- 5761 cggccg-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS C.vulgaris 5903 bp RNA RNA 11-JAN-191 DEFINITION Chlorella vulgaris. ACCESSION No information KEYWORDS No information. SOURCE Chlorella vulgaris. ORGANISM Chlorella vulgaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X13688 BASE COUNT 449 a 395 c 497 g 457 t 4105 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acu----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU U-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-ggga-ccu gccggu--c- cg-ccgu(uu cg)gug-ugc ---------- 1801 ---------- ------a--- cuggca-g-- ---gg---cu caccuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----ag-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUca c--gguugg- ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuu -cgaaa]--- ---------- 5461 -------cug cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUgcu- 5641 ggu-gaag-- ugu-ucgga- uugg-cgac- cugg-ggcgg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- ccgc-ucu-- 5761 cggccg-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.zof.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74004 ID CZ18SRNA standard; DNA; PLN; 1794 BP. XX AC X74004; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.zofingiensis (SAG 211-14a) gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella zofingiensis OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-1794 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-1794 RA Huss V.A.R., Holweg C., Kessler E.; RT ; RL Unpublished. XX RN [3] RP 1-1794 RA Huss V.A.R., Holweg C., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT primer_bind 1..21 FT /note="PCR amplification 5'-primer" FT rRNA 1..1794 FT /note="18S small subunit" FT source 1..1794 FT /organism="Chlorella zofingiensis" FT /strain="SAG 211-14a" FT primer_bind complement(1770..1794) FT /note="PCR amplification 3'-primer" XX SQ Sequence 1794 BP; 459 A; 376 C; 486 G; 471 T; 2 other; BASE COUNT 459 a 376 c 486 g 471 t 4111 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCAU(---- ----uua)AU GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggc-ucc agcggu--c- cg-cc--(ua u-)-gg-uga ---------- 1801 ---------- -----gu-a- -cugcu-gug -------gcc caccuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACUU-UAG CAUGGAA|UA -ACAUGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(---uu uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---ugg-uag ca-------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ugcugcca-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ucuga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ucaa-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGcu- 5641 ggu-gaag-- ugu-ucgga- uugg-caga- aaccggur-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -cau-cgg-- 5761 uuacug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Nano.euc 5903 bp RNA RNA ~?~???? DEFINITION Nanochlorum eucaryotum. ACCESSION No information KEYWORDS No information. SOURCE Nanochlorum eucaryotum. ORGANISM Nanochlorum eucaryotum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: X06425 Phylo:Eukaryotes,Protozoan?-Plant BASE COUNT 440 a 397 c 498 g 459 t 4109 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacugcuuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU U-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCC-(---- ---uuu-)-G GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAACC -UAAA--CAC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-ccu gccggu--c- cg-ccguuuc ggugug-cac ---------- 1801 ---------- ------u-g- gccg------ -gg-----cc caccuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuccugggc 2161 (uucgcu--- ---------- ---------- ---)guccgg gacc------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------UA CGCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGA----CU 2581 CUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AGGA- CCG--GAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-g-ug uu--(---uu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[ccU-GC UAAcUAGuca c--gcgugc- ---------u ccg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gcacgcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCa-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggucc----g gguaau-cuu -ugaau]--- ---------- 5461 -------cug cau-c-g--- uGAC-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUgcu- 5641 ggu-gaaa-- ugc-ucgga- uugc-ggcu- uugg-gcgg- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ccgc-ccu-- 5761 uggcug-ucg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS Prot.wic.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56099 ID PWRRN16L standard; DNA; PLN; 1803 BP. XX AC X56099; XX DT 21-FEB-1991 (Rel. 27; Last updated; Version 1) DT 21-FEB-1991 (Rel. 27; Created) XX DE P. wickerhamii 16s-like small subunit rRNA. XX KW 16S-like ribosomal RNA; small subunit ribosomal RNA. XX OS Prototheca wickerhamii OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales. XX RN [1] RB 1-1803 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) on tape to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORAORY, CENTER FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX RN [2] RB 1-1803 RA Huss V.A.R., Sogin M.L.; RT "Phylogenetic position of some Chlorella species within the RT Chlorococcales based upon complete small-subunit ribosomal RNA RT sequences."; RL J. Mol. Evol. 31:432-442(1990). XX CC See also X56099, X56100, X56101, X56102, X56103, X56104 and X56105. CC Ambiguity of nucleotides may be caused by PCR errors or by CC microheterogeneity within the 16s-like rRNA genes. XX FH Key Location/Qualifiers FH FT misc_feature 1..21 FT /note="PCR amplification primer" FT rRNA 1..1803 FT /product="small subunit ribosomal RNA (16s-like FT rRNA)" /gene="small subunit rRNA (16s-like)" FT misc_feature 1778..1803 FT /note="PCR amplification primer" XX SQ Sequence 1803 BP; 449 A; 395 C; 495 G; 463 T; 1 other; BASE COUNT 449 a 395 c 495 g 463 t 4101 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aauggu---u ---------- -au-a-cuau gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCCU(---- ---cac-)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAACC -UAAA--CAC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gag g-ucgu-ccu gcuggu--c- cg-cc-guuu cggugu-gca ---------- 1801 ---------- ------c-u- ggcgcg---- ------ggcg gucuuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugcugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-u- gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc agcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------ACC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACAUGA-UA -GGA----CU 2581 CUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----AAGA- CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CRAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-GU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-cg uu--(---cu aucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUgc u--gccuagg g--------c uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------cccu agguuauu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugcuA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[gcaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuc -auaac]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cagc- cggu-cgugg ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- ccgc-ucc-- 5761 cggcag-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS Prot.zop 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X63519 ID PZRRNA standard; DNA; PLN; 1809 BP. XX AC X63519; XX DT 30-JAN-1992 (Rel. 30, Last updated, Version 5) DT 20-JAN-1992 (Rel. 30, Created) XX DE P.zopfii small subunit ribosomal RNA XX KW small subunit ribosomal RNA. XX OS Prototheca zopfii OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales. XX RN [1] RP 1-1809 RA Huss V.A.R.; RT ; RL Submitted (13-DEC-1991) on tape to the EMBL Data Library by: RL V.A.R. Huss, Institut fuer Botanik und, Pharmazeutische Biologie, RL Universitaet Erlangen, Staudtstr 5, W-8520 Erlangen, FRG XX RN [2] RA Huss V.A.R., Hartmann E., Sogin M.L., Kessler E.; RT ; RL Unpublished. XX CC *source: strain=263-1a; XX FH Key Location/Qualifiers FH FT primer_bind 1..21 FT /note="PCR amplification primer" FT rRNA 1..1809 FT /product="small subunit rRNA" FT primer_bind 1785..1809 FT /note="PCR amplification primer" XX SQ Sequence 1809 BP; 410 A; 462 C; 542 G; 395 T; 0 other; BASE COUNT 410 a 462 c 542 g 395 t 4094 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gagagguuug ---------- aau-a-cucu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAu-cagu- aac-aauu-- ----ucuuug 241 augg<----- ---------- ---------- ---------- ---------u ccccu--ugc 301 u>ACUCGG-A UACCCGUAG( -A-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucauuc -aa|guuucu gc|--CCU-A UCA--ACUUU G-GACGGUA- 1141 GG(-AUAGAG G)CCU-ACCG U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acg--)C 1321 AGGG-A-GGU -|A|GUGACA AUAC-GU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AG CGAugccga- -acu-(---- ---auc-)-a gu-uu-ggca A-UCGAAAU- 1501 ------GAGG ----GCAAAC -UAAA--CCC C-----AC-A C-CGA-GGAU C---->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 G-AGCGUA|U AUAAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaugua-gac g-gucg-cuc gcgagg--c- gg-ucccggg uucucc-cgg ---------- 1801 ---------- ------a-g- cacccc-u-- -ucgg--cgu ccucug-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uggcga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --gcguc--- gcggcugggc 2161 (uucacc--- ---------- ---------- ---)gcucgg ccgc------ ---------- 2221 ----gggcc- --------uc gccgu----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUGGAGUGU UC-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 -------UUC -GCC-G-UGG ACACGU-UAG CAUGGAA|UA -ACGGCA-CA -GGA----CU 2581 CUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UGUC 2821 -CC-GUUGGU -CU-GC---- -----AGGA- CCG-GA-GUA A--UGAUGAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGA-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCGU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-GU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg ggg-a-g-gc gc--(----u caauc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gcc-c u-cc-ccg-g ca-ccuu--- ---------- ----ccGA(- 3661 GAAA-)UCa- -aAGUG-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uggc-gagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 cauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-GG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGcuc c--ggggggc ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gccccgc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cgacG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Gcu-g -g-c(----- 5041 -guucca-)g ccag-C-GGA AGCG-CGAGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-g cgcgg----- ---------- 5281 ---(------ ----)[gcaa cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uccguc-cc gcc(gaga-) ggcgc----g acgacu-cuc -ccaac]--- ---------- 5461 -------ccg cgc-c-g--- uGAC-G-GGG AUAGAUCCU( UGGAAUUU)U UGAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- cgc-ucgga- uugg-ucgc- gggc-cugcg gg-------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------c ccgc-agc-- 5761 ccgcga-ccg -agaa-|guu -cguugaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Char.vac 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M63001 LOCUS CAUUGEAC 1793 bp ds-DNA PLN 14-FEB-1992 DEFINITION Characium vacuolatum 18S ribosomal RNA gene. ACCESSION M63001 KEYWORDS 18S ribosomal RNA. SOURCE Characium vacuolatum DNA. ORGANISM Characium vacuolatum Fungi; Chlorophycota; Chlorophyceae; Chlorococcales; Chlorococcaceae. REFERENCE 1 (sites) AUTHORS Wilcox,L.W., Fuerst,P.A., Floyd,G.L. and Lewis,L.A. TITLE Concordance of molecular and ultrastructural data in the study of green algal evolution JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1793 /partial /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 459 a 370 c 488 g 476 t ORIGIN BASE COUNT 459 a 370 c 488 g 476 t 4110 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cggu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----ucu 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-- A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCA-(---- ---uuua)-U GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAU C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga u-gugu-ugu cgcggu--c- ug-cc-(-uc u)-ggu-acg ---------- 1801 ---------- -----ua--- cugcgu-ucg -------aug caucuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugcugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--a gcuccugggc 2161 (uuaauu--- ---------- ---------- ---)gucugg gacu------ ---------- 2221 ----cggaa- --------uc agcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AGUGACCU UG-AGCA--A 2461 ACAAGAGUGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUUUUU-UAG CAUGGAA|UC -ACACGA-UA -GGACuCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----ag-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-g-g-ug uu--(---ca auugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 cggg-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uguggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUAa ---cacauac u--------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- aguaugug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuuUA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ucaa-U-GGA AGUG-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-a ugcau----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-a cc-gau--ug gg-ugugcu- 5641 ggu-gaag-- ugu-ucgga- cugg-ccuc- agcg-gugg- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- -ccu-cug-- 5761 cugaag-cug -ggaa-|gaa -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.min.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M62996 LOCUS CCEUGEAA 1795 bp ds-DNA PLN 14-FEB-1992 DEFINITION Chlorococcopsis minuta 18S ribosomal RNA gene. ACCESSION M62996 KEYWORDS 18S ribosomal RNA. SOURCE Chlorococcopsis minuta DNA. ORGANISM Chlorococcopsis minuta Fungi; Chlorophycota; Chlorophyceae; Chlorococcales; Chlorococcaceae. REFERENCE 1 (sites) AUTHORS Wilcox,L.W., Fuerst,P.A., Floyd,G.L. and Lewis,L.A. TITLE Concordance of molecular and ultrastructural data in the study of green algal evolution JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1795 /partial /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 447 a 389 c 505 g 454 t ORIGIN BASE COUNT 447 a 389 c 505 g 454 t 4108 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uau 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCGGG- -GCC-(---- ----uau)-G GU-CU-UGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUG -UAAA--UAU C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-ggga-cca cgcggu--c- ug-cc--(uc u-)ggu-acg ---------- 1801 ---------- -----ua--- cugcgc-cug ---gg---cc caccuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugcugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c c-uccugggc 2161 (uucacu--- ---------- ---------- ---)gucugg gggg------ ---------- 2221 ----ugggag --------uc agcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AGUGACCU UG-AGCA--A 2461 ACAAGAGAGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUUUUU-UAG CAUGGAA|UC -ACACGA-UA -GGACugUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----GG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAC- A-CGAACA-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-g-cg uc--(---cu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 cggg-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uguggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca ---cagccac c--------u ccu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------g guggcugc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcuGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ccag-U-GGA AGUG-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CAC-GCCCGU CGCUCC-U-A CC-GAU--UG AG-UGUGcu- 5641 ggu-gaag-- ugu-ucgga- cuug-caca- gauu-cugg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -cca-gag-- 5761 ccugag-cgg -ggaa-|gaa -cauuaaacc cu-ccc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS Neoc.aqua 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M62861 LOCUS NEHUGEAA 1794 bp ds-DNA PLN 14-FEB-1992 DEFINITION Neochloris aquatica 18S ribosomal RNA gene. ACCESSION M62861 KEYWORDS 18S ribosomal RNA. SOURCE Neochloris aquatica DNA. ORGANISM Neochloris aquatica Fungi; Chlorophycota; Chlorophyceae; Chlorococcales; Chlorococcaceae. REFERENCE 1 (sites) AUTHORS Wilcox,L.W., Fuerst,P.A., Floyd,G.L. and Lewis,L.A. TITLE Concordance of molecular and ultrastructural data in the study of green algal evolution JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1794 /partial /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 452 a 381 c 484 g 477 t ORIGIN BASE COUNT 452 a 381 c 484 g 477 t 4109 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-CCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----ucc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -gcac(---- ---auc-)gu gU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ucu agcggu--c- cg-cc--(ua u)-ggu-gag ---------- 1801 ---------- -----ua--- cugcua-u-- ---gg---cc uuccuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuccugggc 2161 (uuaacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgu----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUGGAGUGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 -------UGC -GCU-C-UGA ACAUUU-UAG CAUGGAA|UA -ACACGA-UA -GGA----CU 2581 CUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AGGA- CCA-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-cg uu--(---uc auugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--gaucgcc ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ggcgguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggcuga CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ucaa-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---(------ ----)[ucaa caagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------ccg cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-caaa- gucg--cgg- ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- -ccg-guu-- 5761 ucuaug-cca -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS Neoc.vig 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M74496 LOCUS NEH18SRDNA 1788 bp ss-rRNA RNA 26-JUN-1992 DEFINITION Neochloris vigenis 18S ribosomal RNA, complete. ACCESSION M74496 KEYWORDS 18S ribosomal RNA. SOURCE Neochloris vigenis DNA. ORGANISM Neochloris vigenis Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Chlorococcaceae. REFERENCE 1 (bases 1 to 1788) AUTHORS Wilcox,L.W., Lewis,L.A., Fuerst,P.A. and Floyd,G.L. TITLE Assessing the relationships of autosporic and zoosporic chlorococcalean green algae with 18S rDNA sequence data JOURNAL J. Phycol. 28, 381-386 (1992) STANDARD full staff_review FEATURES Location/Qualifiers misc_feature 1..20 /citation=[1] rRNA 1..1788 /standard_name="nuclear small subunit rRNA gene" /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial misc_feature 1769..1788 /citation=[1] BASE COUNT 447 a 377 c 482 g 468 t 14 others ORIGIN BASE COUNT 447 a 377 c 482 g 468 t 4129 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----ucc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -gcac(---- ---auc-)gu gU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ucu agcggu--c- cg-cc--(uc u)-ggu-gag ---------- 1801 ---------- -----ua--- cugcua-u-- ---gg---cc uuccuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--- gcuccugggc 2161 (uugacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgu----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUGGAGUGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 -------UGC -GCU-C-UGA ACAUUU-UAG CAUGGAA|UA -ACACGA-UA -GGA----CU 2581 CUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----AGGA- CCA-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|ACU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-uu gcg-g-a-cg uu--(---uc auugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--nnnnnnn ---------n nnn------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --gcgguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggcuga CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guaua-)g ucaauU-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---(------ ----)[ucaa caagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------ccg cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-caaa- gucg-ccgg- ---------- ---------- 5701 -------(gu cu----)--- ---------- ---------- ---------- -ccg-u-u-- 5761 ucuaug-cca -acaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS Hydr.ret 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M74497 LOCUS HYI18SRRNA 1789 bp ss-rRNA RNA 15-JAN-1992 DEFINITION Hydrodictyon reticulatum 18S ribosomal RNA, complete. ACCESSION M74497 KEYWORDS 18S ribosomal RNA. SOURCE Hydrodictyon reticulatum rRNA. ORGANISM Hydrodictyon reticulatum Eukaryota; Fungi; Chlorophycota; Chlorophyceae; Chlorococcales; Hydrodictyaceae. REFERENCE 1 (bases 1 to 1789) AUTHORS Wilcox,L.W., Lewis,L.A., Fuerst,P.A. and Floyd,G.L. TITLE Assessing the relationships of autosporic and zoosporic chlorococcalean green algae with 18S rDNA sequence data JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers misc_feature 1..20 /citation=[1] rRNA 1..1789 /standard_name="Nuclear small subunit rRNA gene" /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial misc_feature 1770..1789 /citation=[1] BASE COUNT 447 a 373 c 489 g 479 t 1 others ORIGIN BASE COUNT 447 a 373 c 489 g 479 t 4115 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uuc 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -gcac(---- ---uuc-)gu gU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ucu agcggu--c- cg-cc--(ua u)-ggu-gag ---------- 1801 ---------- -----ua--- cugcua-u-- ---gg---cc cuccuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-a- guugcugggc 2161 (uucacu--- ---------- ---------- ---)guccgg ugcu------ ---------- 2221 ----uggag- --------uc ggcgu----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UA CGCC-C-UGA AUACUU-UAG CAUGGAA|UA -ACACGA-UA -GGA----CU 2581 CUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----AG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(---uu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCNUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--ggucgc- --------uu uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --gcggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguuga CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ucaa-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-caga- agcgggug-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -cac-cua-- 5761 cuacug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS Pedi.dup 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M62997 LOCUS PDAUGEAA 1800 bp ds-DNA PLN 14-FEB-1992 DEFINITION Pediastrum duplex 18S ribosomal RNA gene. ACCESSION M62997 KEYWORDS 18S ribosomal RNA. SOURCE Pediastrum duplex DNA. ORGANISM Pediastrum duplex Eukaryota; Fungi; Chlorophycota; Chlorophyceae; Chlorococcales; Hydrodictyaceae. REFERENCE 1 (sites) AUTHORS Wilcox,L.W., Fuerst,P.A., Floyd,G.L. and Lewis,L.A. TITLE Concordance of molecular and ultrastructural data in the study of green algal evolution JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1800 /partial /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 450 a 374 c 492 g 482 t 2 others ORIGIN BASE COUNT 450 a 374 c 492 g 482 t 4105 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uuc 301 u>ACUCGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -gcac(---- ---uuc-)gu gU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ucu agcggu--c- cg-cc--(ua u)-ggu-gag ---------- 1801 ---------- -----ua--- cugcua-c-- ---gg--ccc ucccuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-a- guugcugggc 2161 (uucacu--- ---------- ---------- ---)guccgg ugcu------ ---------- 2221 ----uggag- --------uc ggcgu----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AACGA----- ---------- ---------- ---------- 2521 -------UAC -GCC-C-UGA AUACUU-UAG CAUGGAA|UA -ACACGA-UA -GGA----CU 2581 CUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----AGGA- CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(---uu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUA |GGC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--ggucgc- --------uu uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --gcggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gguuga CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ucaa-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGGgGCCGC A-CGUGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-caga- aagcggggug ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- cacu-ua--- 5761 cuacug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.fus.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56104 ID CFRRN16L standard; DNA; PLN; 1796 BP. XX AC X56104; XX DT 21-FEB-1991 (Rel. 27; Last updated; Version 1) DT 21-FEB-1991 (Rel. 27; Created) XX DE C. fusca 16s-like small subunit rRNA. XX KW 16S-like ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella fusca OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RB 1-1796 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) on tape to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORAORY, CENTER FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX RN [2] RB 1-1796 RA Huss V.A.R., Sogin M.L.; RT "Phylogenetic position of some Chlorella species within the RT Chlorococcales based upon complete small-subunit ribosomal RNA RT sequences."; RL J. Mol. Evol. 31:432-442(1990). XX CC See also X56099, X56100, X56101, X56102, X56103, X56104 and X56105. CC Ambiguity of nucleotides may be caused by PCR errors or by CC microheterogeneity within the 16s-like rRNA genes. XX FH Key Location/Qualifiers FH FT misc_feature 1..21 FT /note="PCR amplification primer" FT rRNA 1..1796 FT /product="small subunit rRNA (16s-like)" FT /gene="small subunit rRNA (16s-like)" FT misc_feature 1771..1796 FT /note="PCR amplification primer" XX SQ Sequence 1796 BP; 458 A; 372 C; 485 G; 480 T; 1 other; BASE COUNT 458 a 372 c 485 g 480 t 4108 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 gugg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCAU(---- ---uuc-)AU GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ucu agcggu--c- cg-cc--uau -gguga-gua ---------- 1801 ---------- ------c-u- gcuau----- -------ggc cuuccu-uuc ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuucugggc 2161 (uuaauu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc gacgu----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------UAC -GCC-C-UGA AUACUU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----ag-ga CUG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-a-a-ug uu--(---uu uuuaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUcc u--aguugc- ---------u uuuu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gcagcua-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcugA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ucaa-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa caagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaaa-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cagc- uuag-ggug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- cacc-uca-- 5761 ggucug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----C-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.fus.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74002 ID CF18SRNA standard; DNA; PLN; 1794 BP. XX AC X74002; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.fusca gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella fusca OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-1794 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-1794 RA Huss V.A.R., Stimmer M., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT primer_bind 1..21 FT /note="PCR amplification 5'primer" FT rRNA 1..1794 FT /note="18S small subunit" FT source 1..1794 FT /organism="Chlorella fusca" FT /strain="var. rubescens: CCAP 232/1" FT primer_bind complement(1770..1794) FT /note="PCR amplification 3'primer" XX SQ Sequence 1794 BP; 456 A; 371 C; 485 G; 482 T; 0 other; BASE COUNT 456 a 371 c 485 g 482 t 4109 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 gugg<----- ---------- ---------- ---------- ---------u acc---uuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCAU(---- ---uuc-)AU GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ucu agcggu--c- cg-cc--uau -gguga-gua ---------- 1801 ---------- ------c-u- gcuau----- -------ggc cuuccu-uuc ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuucugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc gacgu----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------UAC -GCC-A--GA AUACUU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----ag-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-a-a-ug uu--(---uu uucaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGucu c--uguugc- ---------u uuuu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gcagcug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcuga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ucaa-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa caagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaag-) ggucu----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cagc- uuagggug-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- cacc-uca-- 5761 ggucug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.fus.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73995 ID CF18SRRNA standard; DNA; PLN; 1794 BP. XX AC X73995; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE C.fusca gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Chlorella fusca OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RP 1-1794 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-1794 RA Huss V.A.R., Stimmer M., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT primer_bind 1..21 FT /note="PCR amplification 5'-primer" FT primer_bind complement(1770..1794) FT /note="PCR amplification 3'-primer" FT rRNA 1..1794 FT /note="18S small subunit" FT source 1..1794 FT /organism="Chlorella fusca" FT /strain="var.fusca: UTEX 343" XX SQ Sequence 1794 BP; 462 A; 367 C; 487 G; 478 T; 0 other; BASE COUNT 462 a 367 c 487 g 478 t 4109 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 gugg<----- ---------- ---------- ---------- ---------u acc---uucu 301 u>ACUCGGAA UAACCGUAA( -G-AAAA)UU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCAU(---- ---uuu-)AU GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-uuc agcggu--c- cg-cc--uau -gguga-gca ---------- 1801 ---------- ------c-u- gcugu----- -------ggc cuuccu-uac ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacc-u- gcuucugggc 2161 (uucauu--- ---------- ---------- ---)guccgg gaca------ ---------- 2221 ----gggau- --------uc ggcau----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------UAC -GCC-G-UGA AUACUU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGC 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -CU-GUUGGC -CU-GU---- -----ag-ga GUG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-cg uu--(---uu ug-cau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uca-g ca-ccuu--- ---------- ----gaGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 U-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU--U UAAAUAGuca c--agucgc- ---------u uuuu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gcgggugg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuuga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-Guu-g -g-c(----- 5041 --guuua-)g ucaa-C-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa caagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccc-ua gcc(gaaa-) ggcuc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAU (-UCAUCAG- )AUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cugu- ugaaggug-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -cac-cgu-- 5761 cgauug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Scen.obl 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56103 ID SORRN16L standard; DNA; PLN; 1795 BP. XX AC X56103; XX DT 21-FEB-1991 (Rel. 27; Last updated; Version 1) DT 21-FEB-1991 (Rel. 27; Created) XX DE S.obliquus 16s-like small subunit rRNA. XX KW 16S-like ribosomal RNA; small subunit ribosomal RNA. XX OS Scenedesmus obliquus OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Scenedesmaceae. XX RN [1] RB 1-1795 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) on tape to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORAORY, CENTER FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX RN [2] RB 1-1795 RA Huss V.A.R., Sogin M.L.; RT "Phylogenetic position of some Chlorella species within the RT Chlorococcales based upon complete small-subunit ribosomal RNA RT sequences."; RL J. Mol. Evol. 31:432-442(1990). XX CC See also X56099, X56100, X56101, X56102, X56103, X56104 and X56105. CC Ambiguity of nucleotides may be caused by PCR errors or by CC microheterogeneity within the 16s-like rRNA genes. XX FH Key Location/Qualifiers FH FT misc_feature 1..21 FT /note="PCR amplification primer" FT rRNA 1..1795 FT /product="small subunit rRNA (16s-like)" FT /gene="small subunit rRNA (16s-like)" FT misc_feature 1770..1795 FT /note="PCR amplification primer" XX SQ Sequence 1795 BP; 457 A; 369 C; 485 G; 483 T; 1 other; BASE COUNT 457 a 369 c 485 g 483 t 4109 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 gugg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCAU(---- ---uuu-)AU GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ucu agcggu--c- cg-cc--uau gg--ug-agu ---------- 1801 ---------- ------a-c- ugcuau-g-- -gcc-----u uccuuu-c-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuucugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc gacgu----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------UAC -GCC-A--GA AUACUU-UAG CAUGGAA|UA -ACACGA-UA -GGA----CU 2581 CUG----G-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----AGGA- CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GRGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-a-a-ug uu--(---uu uuuaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uugaca---- -ga(uugaga gc)------- ucuuucuug- ----auu--c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUcu ---caguugc ---------u uuuu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gcagcug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcugA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ucaa-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa caagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaag-) ggucu----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-cg-uG- AU---GGGGA -UAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggugaag--- ugu-ucgga- uugg-cagc- uuag-ggug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- cacc-uca-- 5761 ggucug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS A.stipitat 5903 bp RNA RNA 11-JAN-191 DEFINITION Ankistrodesmus stipitatus. ACCESSION No information KEYWORDS No information. SOURCE Ankistrodesmus stipitatus. ORGANISM Ankistrodesmus stipitatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56100 ID ASRRN16L standard; DNA; PLN; 2187 BP. XX AC X56100; XX DT 21-FEB-1991 (Rel. 27; Last updated; Version 1) DT 21-FEB-1991 (Rel. 27; Created) XX DE A. stipitatus 16s-like small subunit rRNA. XX KW 16S-like ribosomal RNA; small subunit ribosomal RNA. XX OS Ankistrodesmus stipitatus OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales. XX RN [1] RB 1-2187 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) on tape to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORAORY, CENTER FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX RN [2] RB 1-2187 RA Huss V.A.R., Sogin M.L.; RT "Phylogenetic position of some Chlorella species within the RT Chlorococcales based upon complete small-subunit ribosomal RNA RT sequences."; RL J. Mol. Evol. 31:432-442(1990). XX CC See also X56099, X56100, X56101, X56102, X56103, X56104 and X56105. CC Ambiguity of nucleotides may be caused by PCR errors or by CC microheterogeneity within the 16s-like rRNA genes. XX FH Key Location/Qualifiers FH FT misc_feature 1..21 FT /note="PCR amplification primer" FT misc_feature 2160..2187 FT /note="PCR amplification primer" FT rRNA 1..2187 FT /gene="small subunit rRNA (16s-like)" FT /product="small subunit rRNA (16s-like)" FT intron 1264..1657 FT /note="self splicing" /evidence=EXPERIMENTAL XX SQ Sequence 2187 BP; 555 A; 478 C; 605 G; 545 T; 4 other; BASE COUNT 452 a 379 c 487 g 471 t 4114 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUURUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCY-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug--cu ---------- uauac-ugu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ----uaccuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCWU(---- ----uca)AU GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-aggu-ucc aucggu--c- cg-cc--(ua ugg)---uga ---------- 1801 ---------- -----gu--- acugcu-gug ---g----cc uuccuu-uu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g ucuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gaau------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGAUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 --------UA CGCU-C-UGA AUACUU-UAG CAUGGAA|UA -UCGCGA-UA -GGACUCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUc 2821 -uc-GUUGGU -CU-GU---- -----ag-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-a-ug uu--(---cu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-cu-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGu|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cguucgc ---------u uuuu------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gckgacg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-GUU-G -G-C(----- 5041 -guucua-)G CCAA-C-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaga-) ggucu----g gguaau-cug -ugaaa]--- ---------- 5461 -------cug cgu-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CGC-GAU (-UCAUCAG- )AUCGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUgcu- 5641 ggu-gaag-- ugu-ucgga- uugg-cag-- agcg-ggug- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -cac-uug-- 5761 cuuuug-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 ---ag~~~~~ ~~~~~~~~|| ||| // LOCUS Pari.pse 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M63002 LOCUS PAHUGEAA 1801 bp ds-DNA PLN 14-FEB-1992 DEFINITION Parietochloris pseudoalveolaris 18S ribosomal RNA gene. ACCESSION M63002 KEYWORDS 18S ribosomal RNA. SOURCE Parietochloris pseudoalveolaris DNA. ORGANISM Parietochloris pseudoalveolaris Eukaryota; Fungi; Chlorophycota; Chlorophyceae; Chlorococcales. REFERENCE 1 (sites) AUTHORS Wilcox,L.W., Fuerst,P.A., Floyd,G.L. and Lewis,L.A. TITLE Concordance of molecular and ultrastructural data in the study of green algal evolution JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1801 /partial /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 439 a 402 c 501 g 459 t ORIGIN BASE COUNT 439 a 402 c 501 g 459 t 4102 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUAUGCUUG- -gcuc(---- ---uuc-)ga gU-CG-GGCA A-UAGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-cgc gccggu--c- cg-cc-g(uu u)cggu-gug ---------- 1801 ---------- -----ca--- cuggcg-u-- ---gg---cc caccuu-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGA----CU 2581 CUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----GGGA- CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(---uu aucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG aAA-GGGCAg gCCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 ugug-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UUcGA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--gguugg- --------uc cuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --ccagcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggccga CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Cuc-g -g-c(----- 5041 --gacua-)g ccga-U-GGA AGUG-UGAGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaca-) ggccc----g gguaau-cuu -gcaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG CUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-GCC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cggc- aguc-gcgg- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ccgc-uga-- 5761 cugcag-ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGUAA GC-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS A.gracilis 5903 bp RNA RNA 11-JAN-191 DEFINITION Asteromonas gracilis. ACCESSION No information KEYWORDS No information. SOURCE Asteromonas gracilis. ORGANISM Asteromonas gracilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M95614 LOCUS ASORGEA 1783 bp ds-DNA PLN 10-DEC-1992 DEFINITION Asteromonas gracilis 18S ribosomal RNA (18S rDNA) gene, partial. ACCESSION M95614 KEYWORDS 18S ribosomal RNA. SOURCE Asteromonas gracilis DNA. ORGANISM Asteromonas gracilis Eukaryota; Chlorophycota; Prasinophyceae; Pyramimonadales; Polyblepharidaceae. REFERENCE 1 (bases 1 to 1783) AUTHORS Wilcox,L.W., Fuerst,P.A. and Floyd,G.L. TITLE The phylogenetic relationships of four charophycean green algae inferred from complete nuclear-encoded small subunit rRNA gene sequences JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1783 /standard_name="18S nuclear small subunit rRNA gene" /gene="18S rDNA" /citation=[1] /note="putative" misc_feature 1..20 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified.; putative" misc_feature 1764..1783 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified.; putative" BASE COUNT 447 a 377 c 492 g 463 t 4 others ORIGIN BASE COUNT 447 a 377 c 492 g 463 t 4124 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug--cu ---------- uauac-ugu- gaa]------ 181 -----|---A CU|G-CGAA- NGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ----uaccuu 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGG|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -gca-(---- ---uucu)-u gU-CU-GGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ucu agcggu--c- ca-cc-(-au u)-ggu-gag ---------- 1801 ---------- -----ua--- cugcua-c-- ---gg---cc uaccuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --gaacg-g- guucuuggac 2161 (uuaacu--- ---------- ---------- ---)gucugg gacu------ ---------- 2221 ----cggga- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------UA CGCU-C-UGA AUACGU-UAG CAUGGAA|UA -ACACGA-UA -GGACUCCGG 2581 cu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----aa-ga CUG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-g-g-ug uu--(---uc guugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 cggg-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gnnn-c 4141 uguggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGucg c--cuac--- ---------g cuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --guagac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccugg CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUU-G -G-C(----- 5041 --guuua-)G CCAA-U-GGA AGUG-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --acccu-ug gcc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-uugga- uugg-cgcc- ugcu-ggggg ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ccuc-c-u-- 5761 cuggug-cug -agaa-|gaa -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chla.rei 5903 bp RNA RNA 15-JUN-1990 DEFINITION Chlamydomonas reinhardtii; ribosomal RNA small subunit. ACCESSION M32703 J02949 KEYWORDS ribosomal RNA small subunit. SOURCE Chlamydomonas reinhardtii. ORGANISM Chlamydomonas reinhardtii. REFERENCE 1 (bases 1 to 1791) AUTHORS Gunderson,J.H., Elwood,H., Ingold,A., Kindle,K. and Sogin,M.L. TITLE Phylogenetic relationships between chlorophytes, chrysophytes, JOURNAL Proc. Natl. Acad. Sci. U.S.A. 84, 5823-5827 (1987) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: M32703 Phylo:Eukaryotes,Protozoan-Plant? NCBI gi: 167440 BASE COUNT 435 a 393 c 506 g 457 t 4112 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- --GCG(---- ----cuu)CG CGUCU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-ugg ugcggu--c- cg--c-c(uc ug)gug-ugc ---------- 1801 ---------- ------a--- cugcuc-u-- ---gc---uc caccuu-cc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uucacu--- ---------- ---------- ---)gucugg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 --U-GUUGGU -CU-GU---- -----gg-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGG|UAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UCCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGG-AAG- A-CGAACA-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-g-a-ug uu--(---cu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 cggg-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uguggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUca ---gcaucgc ---------a ccu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gcggugc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ccaa-U-GGA AGUA-UGAGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGCGA----- ---------- 5281 ---(------ ----)[ccaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaau-cuu -guaaa]--- ---------- 5461 -------ccg cgu-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUgcu- 5641 ggu-gaag-- ugu-ucgga- uuga-gcu-- uggc-uggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -ccu-gg--- 5761 ccuugc-uug -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS Duna.par 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M62998 LOCUS DUNRDEAA 2585 bp ds-DNA PLN 04-JUN-1992 DEFINITION Dunalielia parva 18S rDNA gene. ACCESSION M62998 KEYWORDS 18S ribosomal RNA. SOURCE Dunaliella parva DNA. ORGANISM Dunaliella parva Eukaryota; Chlorophycota; Chlorophyceae; Volvocales; Dunaliellaceae. REFERENCE 1 (sites) AUTHORS Wilcox,L.W., Lewis,L.A., Fuerst,P.A. and Floyd,G.L. TITLE Group I introns within the nuclear-encoded SSU rRNA gene of three green algae JOURNAL Unpublished (1991) STANDARD full staff_review REFERENCE 2 (sites) AUTHORS Wilcox,L.W., Fuerst,P.A., Floyd,G.L. and Lewis,L.A. TITLE Concordance of molecular and ultrastructural data in the study of green algal evolution JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers precursor_RNA 1..2585 /partial /gene="18S rDNA" /partial misc_feature 1..20 /note="corresponds to PCR primer, sequence not verified" /label=5' PCR intron 1160..1540 /number=1 /partial intron 2145..2563 /number=2 /partial misc_feature 2566..2585 /note="corresponds to PCR primer, sequence not verified" /label=3' PCR BASE COUNT 674 a 552 c 717 g 641 t 1 others ORIGIN BASE COUNT 451 a 375 c 492 g 466 t 4119 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u ac-----cuu 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCA-(---- ---uuuu)-U GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ugu agcggu--c- ag-cc--(uu u-)ggu-gag ---------- 1801 ---------- -----ua--- cugcua-cgg --------cc caccuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--u gcuccugggc 2161 (uuaacu--- ---------- ---------- ---)guccgg gaca------ ---------- 2221 ----cggaa- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 --------UA CGCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGA----cu 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----AA-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-g-g-ug uu--(---uc guugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 cggg-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uguggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCN|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGuca ---cgucuac ---------c ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guaggcg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ccuGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ccaa-U-GGA AGUG-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGcu- 5641 ggu-gaag-- ugu-uugga- cugg-uguc- agug-gggg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -ccu-cug-- 5761 cuggcg-cug -ggaa-|gaa -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS Duna.sal 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M84320 LOCUS DUNRDGAB 2182 bp ds-DNA PLN 04-JUN-1992 DEFINITION Dunaliella salina 18S rDNA. ACCESSION M84320 KEYWORDS . SOURCE Dunaliella salina DNA. ORGANISM Dunaliella salina Eukaryota; Chlorophycota; Chlorophyceae; Volvocales; Dunaliellaceae. REFERENCE 1 (bases 1 to 2182) AUTHORS Wilcox,L.W., Lewis,L.A., Fuerst,P.A. and Floyd,G.L. TITLE Group I introns within the nuclear-encoded SSU rRNA gene of three green algae JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers precursor_RNA 1..2182 /standard_name="nuclear small subunit rRNA gene" /gene="18S rDNA" /citation=[1] /partial misc_feature 1..20 /note="corresponds to PCR primer, sequence not verified" /citation=[1] intron 1160..1556 /citation=[1] /partial misc_feature 2163..2182 /note="corresponds to PCR primer, sequence not verified" /citation=[1] BASE COUNT 577 a 455 c 593 g 557 t ORIGIN BASE COUNT 457 a 372 c 486 g 470 t 4118 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u ac-----cuu 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -gca-(---- ---uuuu)-u gU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggu-ugu agcggu--c- ag-cc--(uu u)-ggu-uag ---------- 1801 ---------- -----ua--- cugcua-c-- ---gg---cc uaccuu-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-a- gcuccugggc 2161 (uuaacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggaa- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 --------UA CGCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----AA-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug cca-g-g-ug uu--(---uc guugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 cggg-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uguggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--gucuac- ---------c ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --guaggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccuga CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ccaa-U-GGA AGUG-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAu----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-uugga- ucgg-uacc- aauggggg-- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- -ccu-cug-- 5761 uuggua-cug -agaa-|gaa -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS S.similis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X65557 ID SS18SRN standard; DNA; PLN; 1772 BP. XX AC X65557; XX DT 14-DEC-1992 (Rel. 34, Created) DT 14-DEC-1992 (Rel. 34, Last updated, Version 2) XX DE S.similis gene for 18S rRNA XX KW 18S ribosomal RNA. XX OS Spermatozopsis similis OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae. XX RN [1] RP 1-1772 RA Sensen C.W.; RT ; RL Submitted (14-APR-1992) on tape to the EMBL Data Library by: RL C.W. Sensen, Universitaet zu Koeln, Botanisches Institut, Lehrstuhl RL I, Gyrhofstrasse 15, W-5000 Koeln 41, FRG XX RN [2] RP 1-1772 RA Sensen C.W., Hinkle G.J., Sogin M.L., Melkonian M.; RT "The sequence of the 18S rDNA gene from Spermatozopsis similis RT Preisig et Melkonian,1894 (Chlorophyceae)"; RL Plant Mol. Biol. 20:1209-1209(1992). XX CC *source: strain=SAG B 1.85; CC *source: isolate=M0723; XX FH Key Location/Qualifiers FH FT rRNA 1..1772 FT /product="18S rRNA" XX SQ Sequence 1772 BP; 459 A; 363 C; 482 G; 468 T; 0 other; BASE COUNT 459 a 363 c 482 g 468 t 4131 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacugcuuu ---------- -au-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u auuu---uua 301 a>ACG-GA-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U GAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCUC-G( ---aca--)A 1321 GAGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCA-(---- ---uuua)-U GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg ugggu-ugc- agcgg--u-c c-gc-(--cu cug)-gug-- ---------- 1801 ---------- --ag-uacug c-uu-----c ggccuacc-u u-ac------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------ug ccgg---gga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cg g--gcucc-u gggc(-uuaa 2161 cu----)gu- ---------- ---------- -ccgggacu- cgga------ ---------- 2221 ---g------ ---ucggcga ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------AGU UACUUUG-AG GA--ACUUAG 2461 AGUGUUCAA- AG--CAAGCc u--------- ---------- ---------- ---------- 2521 ---ACGCUCU -GAAUA-UAU -UAGCAUGG- AA-----|UA -ACAUGA-UA -GGA----cu 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----AGGA- CCG--GAGUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-a-g-ug uu--(--uuu ucgau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 cggg-aagga uagacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA-GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--gauugc- --------uu uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc agucggca-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ucaa-U-GGA AGUA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa caagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 au--ccu-ug guc(gaaa-) ggccc----g gguaau-cuu ug-aaa]--- ---------- 5461 -------CUG CAU-C-G--- UGAU-G-GGG AUAGACCAU( UGCAAUUA)U UGGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUgcu- 5641 ggu-gaag-u gu-ucgga-u ugg-cugc-u uuugg----- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- --cc-uggg- 5761 uag----ccg -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCUU~~~ ~~~~~~~~|| ||| // LOCUS Neph.oliva 5903 bp RNA RNA 11-JAN-191 DEFINITION Nephroselmis olivacea subsp. was Nephroselmis olivacea Stein. ACCESSION No information KEYWORDS No information. SOURCE Nephroselmis olivacea subsp. was Nephroselmis olivacea Stein. ORGANISM Nephroselmis olivacea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74754 ID NO16SSRRA standard; DNA; PLN; 1798 BP. XX AC X74754; XX DT 05-OCT-1993 (Rel. 37, Created) DT 05-OCT-1993 (Rel. 37, Last updated, Version 1) XX DE N.olivacea 16S-like small subunit ribosomal RNA XX KW 16S-like ribosomal RNA. XX OS Nephroselmis olivacea Stein OC Eukaryota; Plantae; Thallobionta; Chlorophyta; Chlorophyceae; OC Volvocales; Prasinophyceae; Pseudoscourfieldiales. XX RN [1] RA Steinkoetter J., Bhattacharya D., Semmelroth I., Bibeau C., RA Melkonian M.; RT "Prasinophytes form identification lineages within the RT Chlorophyta:evidence from ribosomal RNA sequence comparisons"; RL Unpublished. XX RN [2] RP 1-1798 RA Bhattacharya D.; RT ; RL Submitted (20-AUG-1993) on tape to the EMBL Data Library by: RL D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, RL Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG XX FH Key Location/Qualifiers FH FT source 1..1798 FT /organism="Nephroselmis olivacea Stein" FT /strain="SAG 40.89" FT rRNA <1..>1798 FT /product="nuclear encoded 16S-like small subunit ribosomal FT RNA" FT misc_feature 1..21 FT /note="PCR primer" FT misc_feature 1774..1798 FT /note="PCR primer" XX SQ Sequence 1798 BP; 452 A; 378 C; 485 G; 483 T; 0 other; BASE COUNT 452 a 378 c 485 g 483 t 4105 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aa-cua--uu ---------- -au-a-cugg gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuuc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-auc gccggu--c- cg-ucg-(uc u-)cga-ugu ---------- 1801 ---------- -----gc-a- -cuggc-gc- ------gccc caucuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c acuccugguc 2161 (uuuacu--- ---------- ---------- ---)gcccgg gaug------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 -------UUC -GCU-C-UGA AUACGU-UAG CAUGGAA|UA -ACAUGA-UA -GGA----cu 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -CU-UC---- -----GGGA- CCG-GA-GUA A--UGACUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--CG|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug uca-g-a-ug uu--(---gu uuucau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ug-gca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagguaagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCUa ---cgcuuac g--------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- cguaggcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgag- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-GUU-g -g-c(----- 5041 --gucua-)g ccaa-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -accccu-gg gcc(gaaa-) gguuc----g gguaau-cuu -cgaaa]--- ---------- 5461 -------uug cau-C-G--- UGAU-G-GGG CUAGAUUAU( UGCAACUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGUGcu- 5641 ggu-gagg-- acu-cagga- ugau-gucc- auguggugg- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ccgc-cgu-- 5761 guggau-guc -agaa-|ucu -guucaaacc cu-cgc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Tetr.str 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X70802 ID TS16SLA standard; DNA; PLN; 1797 BP. XX AC X70802; XX DT 05-FEB-1993 (Rel. 34, Created) DT 05-FEB-1993 (Rel. 34, Last updated, Version 2) XX DE T.striata gene for 16S-like ribosomal RNA XX KW 16S ribosomal RNA; 16S-like ribosomal RNA. XX OS Tetraselmis striata OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Volvocales; Prasinophyceae. XX RN [1] RA Bhattacharya D., Steinkoetter J., Bibeau C., Semelr I.; RT "Molecular phylogenetic analysis of the prasinophyceae"; RL Unpublished. XX RN [2] RP 1-1797 RA Bhattacharya D.; RT ; RL Submitted (27-JAN-1993) on tape to the EMBL Data Library by: RL D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, RL Gryhofstr. 15, Lehrstuhl 1, 5000 Koeln 41, FRG XX CC *source: strain=Ply 443; CC *source: cell_line=M 0580; XX FH Key Location/Qualifiers FH FT rRNA 22..1773 FT /product="16S ribosomal RNA" FT /note="16S-like ribosomal RNA" XX SQ Sequence 1797 BP; 462 A; 368 C; 483 G; 484 T; 0 other; BASE COUNT 462 a 368 c 483 g 484 t 4106 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--AUUUG C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuc-)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA-CAAC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga u-ggga-uuu gccggu--c- cg-ccg-(uu u-)cgg-ugu ---------- 1801 ---------- -----gc-a- -cuggc-cag -u------cc caucuu-gu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacu--a gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----aggag- --------cu gacga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AAGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACAUGA-UA -GGA----cu 2581 cug----g-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CU|-UAUC 2821 -UU-GUUGGU -CU-GU---- -----GAGA- CCA-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-g-a-cg uu--(---uu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUa ---cuccuac ---------u uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guaggag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gugAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuua-)g ccaa-U-GGA AGUG-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug acc(gaga-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-G--- UGAU-G-GGG CUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGU-GAU (-UCAUCAG- )AUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGUGuu- 5641 ggu-gagg-- agu-ucgga- uugg-cagu- uugu-ggugg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ccac-ugc-- 5761 uuacag-cug -agaa-|guu -cuccaaacc gc-ccc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-G-G CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Mant.squ 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X73999 ID MS18SRRNA standard; DNA; PLN; 1780 BP. XX AC X73999; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE M.squamata gene for 18S small subunit rRNA XX KW 18S ribosomal RNA; small subunit. XX OS Mantoniella squamata OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Volvocales. XX RN [1] RP 1-1780 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-1780 RA Huss V.A.R., Kranz H.D., Kessler E.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT primer_bind 1..21 FT /note="PCR amplification 5'primer" FT rRNA 1..1780 FT /note="18S small subunit" FT source 1..1780 FT /organism="Mantoniella squamata" FT /strain="CCAP 1965/1" FT primer_bind complement(1756..1780) FT /note="PCR amplification 3'primer" XX SQ Sequence 1780 BP; 463 A; 364 C; 476 G; 477 T; 0 other; BASE COUNT 463 a 364 c 476 g 477 t 4123 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcg---uu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagc- aau-aguu-- ----ucuuug 241 gugg<----- ---------- ---------- ---------- ---------u guuu---uac 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuccauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GACGGUA- 1141 GG(-AUAGAG G)CCU-ACCG U-|GGUGU-U CAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUCGG- -gguu(---- ---uuuc)aa cu-CU-GAUA A-UUGGAAU- 1501 ------GAGA ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggu u-gaga-gcg gccggu--c- cg-cc-(guu u)-ggu-gug ---------- 1801 ---------- -----ca--- cuggcu-gg- -------ucu caacuu-cc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugcgga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-c- gc-ucugggc 2161 (uuaacg--- ---------- ---------- ---)gucugg a-cg------ ---------- 2221 ----uggag- --------uc cgcgu----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCU----- ---------- ---------- ---------- 2521 --------UA CGCU-U--GA AUAUUU-CAG CAUGGAA|UA -ACACUA-UA -GGA----CU 2581 CCUG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UC-GUUGGU -CU-C----- -----GGGA- CGG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(----a auugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca u--acgcua- ---------c ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --uagcgc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-guga CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Aug-u -g-c(----- 5041 --guuua-)g caca-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-a cgaau----- ---------- 5281 ---(------ ----)[gcaa cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-ug gcc(gaaa-) ggucu----g gguaau-cuc -caaau]--- ---------- 5461 --------uu cgu-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 ggu-gaag-- cgu-ucgga- ccgu-ggcu- uucu-gacgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ccgu-cgg-- 5761 auggcc-gug -ggaa-|guu -cguuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A------- -------~|| ||| // LOCUS Pseu.sp. 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75565 ID P16SRRNA standard; DNA; PLN; 1794 BP. XX AC X75565; XX DT 05-NOV-1993 (Rel. 37, Created) DT 05-NOV-1993 (Rel. 37, Last updated, Version 1) XX DE Pseudoscourfieldia gene for 16S-like small subunit ribosomal RNA XX KW 16S-like ribosomal RNA. XX OS Unknown OC Eukaryota; Plantae; Thallobionta; Chlorophyta; Chlorophyceae; OC Volvocales; Prasinophyceae; Pseudoscourfieldiales. XX RN [1] RA Steinkoetter J., Bhattacharya D., Semmelroth I., Bibeau C., RA Melkonian M.; RT "Prasinophytes from independent lineages within the Chlorophyta: RT evidence from ribosomal RNA sequence comparisons"; RL Unpublished. XX RN [2] RP 1-1794 RA Bhattacharya D.; RT ; RL Submitted (02-NOV-1993) on tape to the EMBL Data Library by: RL D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, RL Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG XX FH Key Location/Qualifiers FH FT source 1..1794 FT /organism="Pseudoscourfieldiales" FT /sub_species="Pseudoscourfieldia marina Moestrup and FT Throndsen" FT /strain="CCMP: 717" FT rRNA 22..1770 FT /product="nuclear encoded 16S-like small subunit ribosomal FT RNA" FT primer_bind 1..21 FT primer_bind 1771..1794 XX SQ Sequence 1794 BP; 453 A; 373 C; 493 G; 474 T; 1 other; BASE COUNT 453 a 373 c 493 g 474 t 4110 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aacugc--uu ---------- -au-a-cugg gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuuc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggc-gag gccggu--c- cg-ccg-(uc u-)cgg-ugu ---------- 1801 ---------- -----gc-a- -cuggc-ugc -------gcc caucuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugcugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c gcuccuggcc 2161 (uuuguu--- ---------- ---------- ---)ggcugg gacg------ ---------- 2221 ----uggag- --------uc agcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------UU GGCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGA----cu 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGU -CU-UC---- -----GGGA- CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-g-a-ug uu--(---ag uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cgcgaug c--------u ccu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gcauggcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcgga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUC-g -g-u(----- 5041 --gauua-)a ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 acaaccu-ug gcc(gaaa-) ggucu----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGUGcu- 5641 ggu-gagg-- agu-ccgga- ugau-gggc- gggugg---- ---------- ---------- 5701 -------(cg gu----)--- ---------- ---------- ---------- --cc-gcg-- 5761 cguccgcguc -agaa-|guu -cuucaaacc cu-ngc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Frie.isra 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M62995 LOCUS FRIUGEAA 1801 bp ds-DNA PLN 14-FEB-1992 DEFINITION Friedmannia israeliensis 18S ribosomal RNA gene. ACCESSION M62995 KEYWORDS 18S ribosomal RNA. SOURCE Friedmannia israeliensis DNA. ORGANISM Friedmannia israeliensis Fungi; Chlorophycota; Chlorophyceae; Pleurastrophyceae. REFERENCE 1 (sites) AUTHORS Wilcox,L.W., Fuerst,P.A., Floyd,G.L. and Lewis,L.A. TITLE Concordance of molecular and ultrastructural data in the study of green algal evolution JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1801 /partial /product="18S ribosomal RNA" /gene="18S rRNA" BASE COUNT 446 a 390 c 498 g 467 t ORIGIN BASE COUNT 446 a 390 c 498 g 467 t 4102 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc-----cu 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUU- 1141 GG(-AUAGAG G)CCA-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -gcuu(---- ---uuuc)aa gU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggc-gcu accggu--c- cg-cc-g(au u)cggu-gug ---------- 1801 ---------- -----ca--- cugguc-g-- ---cg---cc caucuu-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggaca-g- gcugcugggc 2161 (uuaacu--- ---------- ---------- ---)gucugg cacc------ ---------- 2221 ----uggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------UA CGCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGA----CU 2581 CUGG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UC-GUUGGU -CU-GU---- -----GG-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--AC|G--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-g-ug uu--(---cu aucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--gguugc- --------uu uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --gcagcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggccga CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuu-g -g-c(----- 5041 -gccuua-)g ccaa-A-GGA AGUG-UGAGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAA----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug acc(gaca-) ggucc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-cggc- agug-ggcgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ccgc-uug-- 5761 cugcag-ccg -agaa-|guu -cucuaaacc cu-ccc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS Myr.biator 5903 bp RNA RNA 11-JAN-191 DEFINITION Myrmecia biatorellae. ACCESSION No information KEYWORDS No information. SOURCE Myrmecia biatorellae. ORGANISM Myrmecia biatorellae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z28971 ID MB18SRRN standard; RNA; INV; 1798 BP. XX AC Z28971; XX DT 30-JUN-1994 (Rel. 40, Created) DT 13-JUL-1994 (Rel. 40, Last updated, Version 5) XX DE M.biatorellae (UTEX 907) mRNA for nuclear encoded small subunit DE ribosomal RNA XX KW 18S ribosomal RNA; nuclear encoded small subunit ribosomal RNA. XX OS Myrmecia biatorellae OC Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; OC Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita; Aculeata; OC Formicoidea; Formicidae. XX RN [2] RP 1-1798 RA Friedl T.; RT ; RL Submitted (10-DEC-1993) to the EMBL/GenBank/DDBJ databases. RL Thomas Friedl, Lehrstuhl Pflanzenoekologie & Systematik, RL Universitaet Bayreuth, Universitaetsstr. 30, 95440 Bayreuth, RL Germany XX RN [3] RA Friedl T., Zeltner C.; RT "Assessing the relationships of lichen algae and the RT Microthamniales (Chlorophyta) with 18S rRNA sequence comparisons"; RL J. Phycol. 30:500-506(1994). XX FH Key Location/Qualifiers FH FT source 1..1798 FT /organism="Myrmecia biatorellae" FT /strain="UTEX 907" FT /isolate="photobiont of the lichen Dermatocarpon FT tuckermani" FT primer_bind 1..21 FT /note="PCR amplification primer" FT rRNA 1..1798 FT /product="nuclear encoded small subunit ribosomal RNA" FT primer_bind 1775..1787 FT /note="PCR amplification primer" XX SQ Sequence 1798 BP; 449 A; 389 C; 496 G; 463 T; 1 other; BASE COUNT 449 a 389 c 496 g 463 t 4106 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 auaaacu--- -------g-- --------cu ---------- uuauacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ----uacccu 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ---------- 361 ---------- ---------- ---------- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUU- 1141 GG(-AUAGAG G)CCA-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuuc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc---- --gga-uggg c-acug-ccg guc-cgccg- -(auu----- ---------- 1801 ---------- )--cggu-gu g-cac-uggc c-gg-u--gc c-caucu--- -----ugcug 1861 ccgg------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -------gga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- c-aggcugcu gggc(uuaac 2161 u----)guc- ---------- ---------- -uggc-a--c -cug------ ---------- 2221 ---gagucgg cga------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GgUU ACUUUG-AGU A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCCu ---------- ---------- ---------- ---------- 2521 ---acGCUCU GAAUAc-au- UAGCAUGGAA -------|UA -ACACGA-UA -GGAcUcugg 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -UC-GUUGGU -CU-GU---- ------ggga ---ccG-GA- G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-g-ug uu--(---cu uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCSUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAauaguca cg-g------ ---------- -uug-cuucu 4381 ugca--gccg gccgacu--- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACu-uuu-g -g-c(----- 5041 -gccuua-)g ccaa-A-GGA AGUG-UGAGg CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAA----- ---------- 5281 ---------- -----[ucaa cgagcaua-- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uccuu--g acc(gaca-) ggucc----g gguaaucuu- -ugaaa]--- ---------- 5461 -------CUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGugcu- 5641 ggu-gaag-u gu-ucgga-u ugg-cggc-a gug-ggugg- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------ccgc ucgc-u--g- 5761 cag----ccg -agaa-|guu -cucuaaacc cu-ccC-A-C CUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Treb.asy 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z21553 ID TA18SRRNA standard; DNA; PLN; 1796 BP. XX AC Z21553; XX DT 08-FEB-1993 (Rel. 34, Created) DT 08-FEB-1993 (Rel. 34, Last updated, Version 1) XX DE T.asymmetrica gene encoding 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Trebouxia asymmetrica OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Pleurastrophyceae; Pleurastrales; Microthamniales. XX RN [1] RP 1-1796 RA Friedl T., Zeltner C.; RT "Systematics and phylogenetic relationships of some lichen RT photobionts and soil algae (Chlorophyta, Pleurastrales) as RT inferred from sequence analyses of their small ribosomal RNA (18S) RT genes"; RL Unpublished. XX RN [2] RP 1-1796 RA Friedl T.; RT ; RL Submitted (22-JAN-1993) on tape to the EMBL Data Library by: RL Thomas Friedl, Lehrstuhl Pflanzenoekologie & Systematik, RL Universitaet Bayreuth, Universitaetsstr. 30, D-8580 Bayreuth, RL Germany XX CC *source: strain=SAG 48.88; CC *source: isolate=photobiont of the lichen Diploschistes diacapsis; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH FT misc_feature 1..19 FT /note="PCR amplification primer" FT rRNA 1..1796 FT /gene="18S rRNA" FT /product="18S ribosomal RNA" FT misc_feature 1774..1796 FT /note="PCR amplification primer" XX SQ Sequence 1796 BP; 450 A; 388 C; 491 G; 467 T; 0 other; BASE COUNT 450 a 388 c 491 g 467 t 4107 others ORIGIN 1 |--------- -------CCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUU- 1141 GG(-AUAGAG G)CCA-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuuc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga g-aggu-acu gccggu--c- ug-ccg-(uu u-)cgg-uau ---------- 1801 ---------- -----gc-a- -cuggc-agc -g------cc ucucuu-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --aaacg--g gcuccugagc 2161 (uuaauu--- ---------- ---------- ---)gcucgg gacu------ ---------- 2221 ----cggug- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGA----cu 2581 cug----g-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UC-GUUGGU -CU-GU---- -----GGGA- CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-g-ug uu--(---cu uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cggcugc --------uu uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagucg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcaGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuu-g -g-c(----- 5041 --gacua-)g ccaa-A-GGA AGUG-UGAGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaca-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGcu- 5641 ggu-gaag-- cgu-ucgga- uugg-cguu- agug-ggcgg ---------- ---------- 5701 -------(uu uu----)--- ---------- ---------- ---------- -ccg-cuc-- 5761 cucuca-cug -agaa-|guu -cguuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Treb.imp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z21551 ID TI18SRRNA standard; DNA; PLN; 1795 BP. XX AC Z21551; XX DT 08-FEB-1993 (Rel. 34, Created) DT 08-FEB-1993 (Rel. 34, Last updated, Version 1) XX DE T.impressa gene encoding 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Trebouxia impressa OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Pleurastrophyceae; Pleurastrales; Microthamniales. XX RN [1] RP 1-1795 RA Friedl T., Zeltner C.; RT "Systematics and phylogenetic relationships of some lichen RT photobionts and soil algae (Chlorophyta, Pleurastrales) as RT inferred from sequence analyses of their small ribosomal RNA (18S) RT genes"; RL Unpublished. XX RN [2] RP 1-1795 RA Friedl T.; RT ; RL Submitted (22-JAN-1993) on tape to the EMBL Data Library by: RL Thomas Friedl, Lehrstuhl Pflanzenoekologie & Systematik, RL Universitaet Bayreuth, Universitaetsstr. 30, D-8580 Bayreuth, RL Germany XX CC *source: strain=UTEX 892; CC *source: isolate=photobiont of the lichen Physcia stellaris; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH FT misc_feature 1..19 FT /note="PCR amplification primer" FT rRNA 1..1795 FT /gene="18S rRNA" FT /product="18S ribosomal RNA" FT misc_feature 1772..1795 FT /note="PCR amplification primer" XX SQ Sequence 1795 BP; 446 A; 386 C; 494 G; 465 T; 4 other; BASE COUNT 446 a 386 c 494 g 465 t 4112 others ORIGIN 1 |--------- -------CCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CW|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUU- 1141 GG(-AUAGAG G)CCA-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uuua)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-gga r-gggu-gcu accggu--c- cg-ccg-(uu u)cggu-gug ---------- 1801 ---------- -----ca--- -cuggcaguu --------cc uuucuu-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugagc 2161 (uuaauu--- ---------- ---------- ---)gcucgg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGA----cu 2581 cug----g-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -UC-GUUGGU -CU-GU---- -----GGGA- CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-g-ug uu--(---cu uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cggrugc --------uu uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccagccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcaGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuu-g -g-c(----- 5041 --gacua-)g ccaa-A-GGA AGUG-UGAGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaca-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGcu- 5641 ggu-gaag-- cgu-ucgga- uugg-aguu- ggu-aggugg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ccgy-ccg-- 5761 cccucu-cug -agaa-|guu -cguuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Treb.mag 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z21552 ID TM18SRRNA standard; DNA; PLN; 1789 BP. XX AC Z21552; XX DT 08-FEB-1993 (Rel. 34, Created) DT 08-FEB-1993 (Rel. 34, Last updated, Version 1) XX DE T.magna gene encoding 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Trebouxia magna OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Pleurastrophyceae; Pleurastrales; Microthamniales. XX RN [1] RP 1-1789 RA Friedl T., Zeltner C.; RT "Systematics and phylogenetic relationships of some lichen RT photobionts and soil algae (Chlorophyta, Pleurastrales) as RT inferred from sequence analyses of their small ribosomal RNA (18S) RT genes"; RL Unpublished. XX RN [2] RP 1-1789 RA Friedl T.; RT ; RL Submitted (22-JAN-1993) on tape to the EMBL Data Library by: RL Thomas Friedl, Lehrstuhl Pflanzenoekologie & Systematik, RL Universitaet Bayreuth, Universitaetsstr. 30, D-8580 Bayreuth, RL Germany XX CC *source: strain=UTEX 902; CC *source: isolate=photobiont of the lichen Pilophorus acicaulis; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH FT misc_feature 1..19 FT /note="PCR amplification primer" FT rRNA 1..1789 FT /gene="18S rRNA" FT /product="18S ribosomal RNA" FT misc_feature 1766..1789 FT /note="PCR amplification primer" XX SQ Sequence 1789 BP; 446 A; 394 C; 498 G; 450 T; 1 other; BASE COUNT 446 a 394 c 498 g 450 t 4115 others ORIGIN 1 |--------- -------CCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-muu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u gcc----ccu 301 u>ACACGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUU- 1141 GG(-AUAGAG G)CCA-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCUU(---- ---uuuc)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggc-gcc gcgugg--u- cg-gc-g(uu cc)ggu-cgu ---------- 1801 ---------- -----ac--- uaccgg-ca- --------cc cauccu-gc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcugcugggc 2161 (uucacu--- ---------- ---------- ---)gucugg cacc------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGA----cu 2581 cug----g-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 -CA-GUUGGU -CU-GU---- -----GGGA- CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CAUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-g-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-cca-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -AAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUCa ---cgcuugc ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gcaggug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccGG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuu-g -g-c(----- 5041 --gauua-)g ccaa-A-GGA AGUG-UGAGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --acccu-ug gcc(gaca-) ggccc----g gguaau-cug -cgaaa]--- ---------- 5461 -------cug cgu-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-CGUGcu- 5641 ggu-gaga-- ugu-ucgga- cugg-cggc- aaug-ggcgg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------- cc-c-gua-- 5761 augcug-uug -ggaa-|guu -caucaaacc cu-ccc-g-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.kes 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X56105 ID CKRRN16L standard; DNA; PLN; 1798 BP. XX AC X56105; XX DT 21-FEB-1991 (Rel. 27; Last updated; Version 1) DT 21-FEB-1991 (Rel. 27; Created) XX DE C. kessleri 16s-like small subunit rRNA. XX KW 16S-like ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella kessleri OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX RN [1] RB 1-1798 RA Sogin M.L.; RT ; RL Submitted (24-SEP-1990) on tape to the EMBL Data Library by: RL M.L. Sogin, MARINE BIOLOGICAL LABORAORY, CENTER FOR MOLECULAR RL EVOLUTION, WOODS HOLE MA 02543, USA XX RN [2] RB 1-1798 RA Huss V.A.R., Sogin M.L.; RT "Phylogenetic position of some Chlorella species within the RT Chlorococcales based upon complete small-subunit ribosomal RNA RT sequences."; RL J. Mol. Evol. 31:432-442(1990). XX CC See also X56099, X56100, X56101, X56102, X56103, X56104 and X56105. CC Ambiguity of nucleotides may be caused by PCR errors or by CC microheterogeneity within the 16s-like rRNA genes. XX FH Key Location/Qualifiers FH FT misc_feature 1..21 FT /note="PCR amplification primer" FT rRNA 1..1798 FT /product="small subunit rRNA (16s-like rRNA)" FT /gene="small subunit rRNA (16s-like)" FT misc_feature 1773..1798 FT /note="PCR amplification primer" XX SQ Sequence 1798 BP; 445 A; 400 C; 500 G; 451 T; 2 other; BASE COUNT 445 a 400 c 500 g 451 t 4107 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uua 301 c>UACCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCCU(---- ---uuuc)AG GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--CCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg c-gggg-ccu gccggu--c- cg-ccg-uuu cggugu-gca ---------- 1801 ---------- ------c-u- ggcag----- -------ggc ycgccu-ugu ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-g- gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guccgg gacu------ ---------- 2221 ----cggag- --------uc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGACuCUGG 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUC 2821 -CU-GUUGGU -CU-GU---- -----ag-ga CCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCGAUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUCGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---uc uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUca c--ggccuc- ---------c ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ggggccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcagA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --gacua-)g ccaa-U-GGA AGCA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAA----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --agccu-ug gcc(gaga-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUGCU- 5641 ggu-gaag-- ugu-ucgga- uugg-caac- ccgg-ggcgg ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- ccgc-ccu-- 5761 gggcug-cck -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Strept 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Nite.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M95615 LOCUS NIFRGEA 1811 bp ds-DNA PLN 10-DEC-1992 DEFINITION Nitella sp. 18S ribosomal RNA (18S rDNA) gene, partial. ACCESSION M95615 KEYWORDS 18S ribosomal RNA. SOURCE Nitella sp. DNA. ORGANISM Nitella sp. Eukaryota; Chlorophycota; Charophyceae; Charales; Characeae; Netelleae. REFERENCE 1 (bases 1 to 1811) AUTHORS Wilcox,L.W., Fuerst,P.A. and Floyd,G.L. TITLE The phylogenetic relationships of four charophycean green algae inferred from complete nuclear-encoded small subunit rRNA gene sequences JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1811 /standard_name="18S nuclear small subunit rRNA gene" /gene="18S rDNA" /citation=[1] /note="putative" misc_feature 1..20 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified.; putative" misc_feature 1792..1811 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified.; putative" BASE COUNT 442 a 401 c 499 g 463 t 6 others ORIGIN BASE COUNT 442 a 401 c 499 g 463 t 4098 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCN-AA GU|------- |-------(- ---)[----- 121 ---------- --------gu aagcuguuuu ---------- uac-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------u ccccc--aau 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCUC(---- ---uuuc)GA GU-CC-GGUA A-UUGGAAU- 1501 ------GAGA ----ACAGUC -UAAA--CCC C-----UU-A AACGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-ggga-agg acuggu--c- cg-ccu(ucg c)gggc-gug ---------- 1801 ---------- -----ca--- ccggcc-c-- -------uuc cgccuc-ucu ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--u gcuccucgcc 2161 (uucauu--- ---------- ---------- ---)ggccgg gacg------ ---------- 2221 ----cggag- --------cc ggcgc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------CAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGCGA-UA -GGA----cu 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GGGA- CCG-GA-GUA A--UGAUCAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AUG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GRACGAAA 3301 GUUGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUNCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uc--(---ua uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-uuc gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagc-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUURG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCUa ---cgcgagg a--------u cuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- uccucgug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccAG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Guu-g -g-a(----- 5041 -cgacua-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-a ugaau----- ---------- 5281 ---(------ ----)[ccaa cgagucg--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ugcaccu-gg guc(gaaa-) ggcuc----g ggcaac-cuu -cucaa]--- ---------- 5461 ------acuy cau-c-G--- UGAC-G-GGG AUAGAUUGU( UGCAAUUA)U CGAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-a cc-gau--ug aa-uggucc- 5641 ggu-gaag-- ugu-ucgga- uugc-ggug- accc-cggcg g--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------c cgcu-ggg-- 5761 ggcgcu-gug -agaa-|guu -cauugaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS Cole.orb 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M95611 LOCUS COHRGEA 1794 bp ds-DNA PLN 10-DEC-1992 DEFINITION Coleochaete orbicularis 18S ribosomal RNA (18S rDNA) gene, partial. ACCESSION M95611 KEYWORDS 18S ribosomal RNA. SOURCE Coleochaete orbicularis DNA. ORGANISM Coleochaete orbicularis Eukaryota; Chlorophycota; Chlorophyceae; Coleochaetales; Colechaetaceae. REFERENCE 1 (bases 1 to 1794) AUTHORS Wilcox,L.W., Fuerst,P.A. and Floyd,G.L. TITLE The phylogenetic relationships of four charophycean green algae inferred from complete nuclear-encoded small subunit rRNA gene sequences JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1794 /standard_name="18S nuclear small subunit rRNA gene" /gene="18S rDNA" /citation=[1] /note="putative" misc_feature 1..20 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified; putative" misc_feature 1775..1794 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified; putative" BASE COUNT 466 a 371 c 469 g 483 t 5 others ORIGIN BASE COUNT 466 a 371 c 469 g 483 t 4114 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-auc ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u ac-----cac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACNUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UANG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCUU(---- ---uuac)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCU C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-ugga-gcg accggu--c- cg-ccu-(uu u)gggu-gug ---------- 1801 ---------- -----ca--- cugguc-uc- -------ucc auccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c gcuucuugcc 2161 (uuaacu--- ---------- ---------- ---)ggcugg gacg------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UA GGCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACAUUA-UA -GGACuCCGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---aa uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-cuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUa ---cacgaag g--------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ccuucgug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gucAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUc-g -g-c(----- 5041 --uucua-)g ccca-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-a ugaau----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-gg acc(gaaa-) ggucc----g gguaau-cuu -uugaa]--- ---------- 5461 ------auuu cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CAUCGCCCGU CGCUCC-U-a cc-gau--ug aa-ugaucc- 5641 ggu-gaag-- uuu-ucgga- nnnc-ccug- gu-c-cg--- ---------- ---------- 5701 -------(cc gc----)--- ---------- ---------- ---------- ---c-ggu-- 5761 gacgcu-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS Cole.scu 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X68825 ID CSSSR standard; DNA; PLN; 1807 BP. XX AC X68825; XX DT 30-OCT-1992 (Rel. 33, Created) DT 30-OCT-1992 (Rel. 33, Last updated, Version 1) XX DE C.scutata gene for small subunit ribosomal RNA (16S-like rRNA) XX KW 16S-like ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. XX OS Coleochaete scutata OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chaetophorales. XX RN [1] RP 1-1807 RA Huss Ar V.; RT ; RL Submitted (28-OCT-1992) on tape to the EMBL Data Library by: RL V.A.R. Huss, Institut fuer Botanik & Pharmazeutische Biologie, RL Universitaet Erlangen, Staudtstr. 5, 8520 Erlangen, FRG XX RN [2] RP 1-1807 RA Huss V.A.R., Kranz H.D.; RT ; RL Unpublished. XX CC *source: strain=SAG 110.80; XX FH Key Location/Qualifiers FH FT misc_feature 1..21 FT /note="PCR amplification primer" FT rRNA 1..1807 FT /product="small subunit ribosomal RNA " FT misc_feature 1782..1807 FT /note="PCR amplification primer" XX SQ Sequence 1807 BP; 470 A; 372 C; 476 G; 489 T; 0 other; BASE COUNT 470 a 372 c 476 g 489 t 4096 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-auc ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u ac-----cac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -gcuu(---- ---uuau)aa gU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCU C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-ugga-gcg accggu--c- cg-cc-c(uu u)gggu-gug ---------- 1801 ---------- -----ca--- cugguu-u-- ---cu---cc auccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg-c- gcuucuugcc 2161 (uuaacu--- ---------- ---------- ---)ggcugg gacg------ ---------- 2221 ----uggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 --------UA GGCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACAUUA-UA -GGACuCCGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---aa uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-cuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGuua c--acaaagg ---------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ccuuugu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggucaa CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --uucua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-gg acc(gaaa-) ggucc----g gguaau-cuu uugaaa]--- ---------- 5461 -------uuu cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUCC- 5641 ggu-gaag-- uuu-ucgga- uugc-ggcg- accc-uggcg g--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------c cgcc-ggu-- 5761 gacgcu-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Chlo.atm 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M95612 LOCUS CKYRGEA 1801 bp ds-DNA PLN 10-DEC-1992 DEFINITION Chlorokybus atmophyticus 18S ribosomal RNA (18S rDNA) gene, partial. ACCESSION M95612 KEYWORDS 18S ribosomal RNA. SOURCE Chlorokybus atmophyticus DNA. ORGANISM Chlorokybus atmophyticus Eukaryota; Chlorophycota; Charophyceae; Chlorokybales. REFERENCE 1 (bases 1 to 1801) AUTHORS Wilcox,L.W., Fuerst,P.A. and Floyd,G.L. TITLE The phylogenetic relationships of four charophycean green algae inferred from complete nuclear-encoded small subunit rRNA gene sequences JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1801 /standard_name="18S nuclear small subunit rRNA gene" /gene="18S rDNA" /citation=[1] /note="putative" misc_feature 1..20 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified.; putative" misc_feature 1782..1801 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified.; putative" BASE COUNT 470 a 353 c 477 g 496 t 5 others ORIGIN BASE COUNT 470 a 353 c 477 g 496 t 4107 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug--uu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGGUA UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---ucua)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CGA| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg a-uggg-gug aucggu--c- ug-ccg-(uu u)cggu-aug ---------- 1801 ---------- -----ua--- cugguc-ac- -------cuu uuccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c gcuccugacc 2161 (uuaauu--- ---------- ---------- ---)ggcugg gacg------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAU -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGUUA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-UAUU 2821 -UU-GUUGGU -UU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGA-AAG- R-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUAGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CU--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-g-a-ug uu--(---ac uuagau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 nnG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCG|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUa ---cgngaag a--------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ucuucgug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUu-g -g-c(----- 5041 --gucua-)g ccag-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-a uggau----- ---------- 5281 ---(------ ----)[ucaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-ug gcc(gaaa-) ggucc----g gguaau-cuu -gugaa]--- ---------- 5461 ------auuu cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CANCGCCCGU CGCUCC-U-a cc-gau--ug aa-ugaucc- 5641 ggu-gaag-- uuu-ucgga- ucgc-gacg- acgc-ggu-- ---------- ---------- 5701 -------(uc gc----)--- ---------- ---------- ---------- -gcu-ggu-- 5761 gacgcc-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS K.flacci.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M95613 LOCUS KLBRGEB 1807 bp ds-DNA PLN 10-DEC-1992 DEFINITION Klebsormidium flaccidum 18S ribosomal RNA (18S rDNA) gene, partial. ACCESSION M95613 KEYWORDS 18S ribosomal RNA. SOURCE Klebsormidium flaccidum DNA. ORGANISM Klebsormidium flaccidum Eukaryota; Chlorophycota; Chlorophyceae; Klebsormidiales; Klebsormidiacea. REFERENCE 1 (bases 1 to 1807) AUTHORS Wilcox,L.W., Fuerst,P.A. and Floyd,G.L. TITLE The phylogenetic relationships of four charophycean green algae inferred from complete nuclear-encoded small subunit rRNA gene sequences JOURNAL Unpublished (1992) STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1807 /standard_name="18S nuclear small subunit rRNA gene" /gene="18S rDNA" /citation=[1] /note="putative" misc_feature 1..20 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified.; putative" misc_feature 1788..1807 /citation=[1] /note="Corresponds to PCR primer. Sequence not verified; putative" BASE COUNT 470 a 371 c 478 g 483 t 5 others ORIGIN BASE COUNT 470 a 371 c 478 g 483 t 4101 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuc-uuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCUGG- -GCUU(---- ---uuca)AA GU-CU-GGCA A-UUGGAAU- 1501 ------GAGU ----GCAAUC -UAAA--UCC C-----UC-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-uggg-gcg gccggu--c- cg-cc--(uc ac)ggu-gug ---------- 1801 ---------- -----ca--- ccggcc-ga- -------ccc auccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacn--c gcuccuggcc 2161 (uuaacu--- ---------- ---------- ---)ggucgg gacg------ ---------- 2221 ----uggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------UA CGCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGUGA-UA -GGA----cu 2581 cugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGAUA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUAUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)NG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(---aa uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUa ---cacgaag a--------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ucuccgug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUuug -g-c(----- 5041 gucuaca-)g ccaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-a ugaau----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-gg gcc(gaaa-) ngucu----g gguaau-cuu -gugaa]--- ---------- 5461 ------auuu cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-a cc-gau--ug aa-ugaucc- 5641 ggu-gaag-- uuu-ucgga- ucgc-ggcu- acuc-cggcg g--------- ---------- 5701 -------(uc ng----)--- ---------- ---------- ---------c ngcc-gaa-- 5761 gaagcu-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS K.flacci.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75520 LOCUS KF18SR 2336 bp DNA PLN 22-SEP-1994 DEFINITION K.flaccidum 18S rRNA gene. ACCESSION X75520 KEYWORDS 18S ribosomal RNA. SOURCE Klebsormidium flaccidum. ORGANISM Klebsormidium flaccidum Eukaryota; Plantae; Thallobionta; Chlorophyta; Charophyceae; Klebsormidiales. REFERENCE 1 (bases 1 to 2336) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. V. A. R. Huss, Inst fuer Botanik & Pharmazeutische, Biologie, Universitaet Erlangen, Staudtstr. 5, 91058 Erlangen, FRG STANDARD full automatic REFERENCE 2 (bases 1 to 2336) AUTHORS Kranz,H.D., Miks,D., Siegler,M.L., Capesius,I., Sensen,C.W. and Huss,V.A.R. TITLE The origin of land plants: phylogenetic releationships among Charophytes, Bryophytes, and vascular plants inferred from complete small subunit ribosomal RNA gene sequences JOURNAL Unpublished STANDARD full automatic COMMENT NCBI gi: 547566 FEATURES Location/Qualifiers source 1..2336 /organism="Klebsormidium flaccidum" /strain="SAG 335-2b" primer_bind 1..21 /note="PCR amplification 5'-primer" rRNA join(1..567,1092..2336) /product="18S small subunit ribosomal RNA" exon 1..567 /number=1 intron 568..1091 /note="group I intron" /number=1 exon 1092..2336 /number=2 primer_bind complement(2312..2336) /note="PCR amplification 3'-primer" BASE COUNT 602 a 498 c 634 g 602 t ORIGIN BASE COUNT 474 a 374 c 479 g 485 t 4091 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacucu--u ---------- uuaua-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCUGG- -GCUU(---- ---uuca)AA GU-CU-GGCA A-UUGGAAU- 1501 ------GAGU ----GCAAUC -UAAA--UCC C-----UC-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U+G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-uggg-gca gccggu--c- ----cgccuc ac--gg-ugu ---------- 1801 ---------- -----gc-a- ccggcu-gac -ccau---cc uucu------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggacgcg--- -cuccuggcc 2161 (uuaacu--- ---------- ---------- ---)ggucgg gacg------ ---------- 2221 -----uggag --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC GCUC-U-GAA UA-CAU-UAG CAUGGAA|UA -ACGUGA-UA -GGA-----c 2581 ucug------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- gucc|-UAUU 2821 -GU-GUUGGU -CU-UC---- ------ggg- accg-gaGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGAUA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUAUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(----a auuug----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUua c--acgaaga ---------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------uc uccgug---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUuug -g-c(----- 5041 gucuaca-)g ccaA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-gg gcc(gaaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUcc- 5641 ggu-gaag-- uuu-ucgga- uugc-ggcu- acuccggcgg ---------- ---------- 5701 -------(uc cg----)--- ---------- ---------- ---------c cgcc-gaa-- 5761 gaagcu-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --a~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cosm.bot 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X79498 LOCUS C.botryt 1797 BP DEFINITION Cosmarium botrytis, Zygnematales, X79498, minus intron, Bhattacharya et al.,PNAS ORIGIN BASE COUNT 464 a 367 c 477 g 484 t 4111 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuc-uuu ---------- uauac-ugu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--cCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uuu)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-ugga-gga uucggu--c- u--gcc-(ga ca)ggu-u-g ---------- 1801 ---------- -----au-a- -cuguc-ucc -------ucc auccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c g-uucuggcc 2161 (uucacu--- ---------- ---------- ---)ggcugg ggcg------ ---------- 2221 ----uggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAU -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGUGA-UA -GGACuCUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-au ac--(----- uaugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUa ---cucgaac a--------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- uguucgag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gucaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GAcu-auc-g -g-c(----- 5041 --guuua-)g ccggcU-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --cuccu-gg auc(gaaa-) ggucu----a gguaau-cuc -ugaaa]--- ---------- 5461 -------uuu cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC---U -UGAUUACG- 5581 U-CC-UGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gaag-- uuu-ucgga- uugc-g-cg- acgugggcgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------n nnnn-ggu-- 5761 gacguu-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cosm.sax 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X79497 LOCUS C.saxoni 1802 BP DEFINITION Cosmocladium saxonicum, Zygnematales, X79497, Bhattacharya et al., NAS,no int ORIGIN BASE COUNT 468 a 378 c 475 g 481 t 4101 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuc-uuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----ugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CAAUACCGG- -GCUC(---- ----uac)GA GU-CAUGGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-ugaa-gga uucggu--c- u--gcc--gc ga-ggu-uug ---------- 1801 ---------- -----au-a- -cugcu-ucc -------ucc auccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c g-uccuugcc 2161 (uucacu--- ---------- ---------- ---)ggccgg ggca------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 --------UA UGCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGCGA-UA -GGACuCUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-uu ac--(---c- -augau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUa ---cgugaac a--------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- uguucacg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GAcu-auc-g -g-c(----- 5041 --guuua-)g ccggcU-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --cuccu-gu acc(gaaa-) gguuu----a ggaaau-cuc -ugaaa]--- ---------- 5461 -------uuu cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gaag-- uuu-ucgga- uugc-ggcg- acggugacgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------c cguc-ggu-- 5761 gacguu-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Spha.gra 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X79496 LOCUS Spha.gra 1800 BP DEFINITION Sphaerozosma granulatum Zygnematales, X79496, Bhattacharya et al., NAS,no intro ORIGIN BASE COUNT 465 a 375 c 473 g 487 t 4103 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuc-uuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----ugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uuc)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-ugga-gga uucggu--c- u--gcc--ua cc-ggu-u-g ---------- 1801 ---------- -----au-a- -cuguu-ucc -------ucc aaucuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--u g-uccuugcc 2161 (uucacu--- ---------- ---------- ---)ggccgg ggca------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAU -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGCUA-UA -GGA----cu 2581 cug----g-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GGGA- CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-uu ac--(---u- -augau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUa ---cgcgaac a--------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- uguucgcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GAcu-auc-g -g-c(----- 5041 --guuua-)g ccggcU-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --cuccu-gg auc(gaaa-) gguuu----a ggaaau-cuc -ugaaa]--- ---------- 5461 -------uuu cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gaag-- uuu-ucgga- uugc-gucg- acgcugacgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------c cguc-ggu-- 5761 gacguu-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Stau.sp.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77452 LOCUS SS16SLRR 2197 bp DNA PLN 08-FEB-1994 DEFINITION Staurastrum sp. 16S-like small subunit rRNA gene (nuclear encoded) ACCESSION X77452 KEYWORDS 16S-like ribosomal RNA. SOURCE Staurastrum sp. ORGANISM Staurastrum sp. Eukaryota; Plantae; Thallobionta; Chlorophyta; Conjugatophyceae; Zygnematales; Zygnematineae; Desmidiaceae. REFERENCE 1 (bases 1 to 2197) AUTHORS Bhattacharya,D., Surek,B., Damberger,S. and Melkonian,M. TITLE Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnematales (Charophyceae) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2197) AUTHORS Bhattacharya,D. JOURNAL Submitted (31-JAN-1994) to the EMBL/GenBank/DDBJ databases. D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG STANDARD full automatic FEATURES Location/Qualifiers source 1..2197 /organism="Staurastrum sp." /strain="M753, culture collection Melkonian, Koeln" primer_bind 1..21 rRNA 22..2172 /product="16S-like small subunit ribosomal RNA, nuclear encoded" primer_bind 2173..2197 BASE COUNT 562 a 464 c 587 g 584 t ORIGIN BASE COUNT 469 a 370 c 473 g 487 t 4104 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuc-uuu ---------- uauac-ugu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uau)GA GU-UU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-ugga-gga uucggu--c- u--gcc-(ua cc)ggu-u-g ---------- 1801 ---------- -----au-a- -cuguu-ucc -------ucc auccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c g-uucugacc 2161 (uucauu--- ---------- ---------- ---)ggcugg agcg------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAU -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGCGA-UA -GGACuCUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ac ac--(---a- -uuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUa ---cgcgaac a--------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- uguucgcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gucaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GAcu-auc-g -g-c(----- 5041 --guuua-)g ccggcU-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --cuccu-gg auc(gaaa-) gguuu----a ggaaau-cuc -ugaaa]--- ---------- 5461 -------uuu cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gaag-- uuu-ucgga- uugc-ggcg- acgug-acgg ---------u ---------- 5701 -------(uc gcc---)g-- ---------- ---------- ---------- --uc-ggu-- 5761 gacguu-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Stau.sp.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74752 ID SS16SSRRA standard; DNA; PLN; 2209 BP. XX AC X74752; XX DT 05-OCT-1993 (Rel. 37, Created) DT 05-OCT-1993 (Rel. 37, Last updated, Version 1) XX DE Staurastrum sp. 16S-like small subunit ribosomal RNA XX KW 16S-like ribosomal RNA. XX OS Staurastrum sp. OC Eukaryota; Plantae; Thallobionta; Chlorophyta; Conjugatophyceae; OC Zygnematales; Zygnematineae; Desmidiaceae. XX RN [1] RA Surek B., Beemelmanns U., Melkonian M., Bhattacharya D.; RT "Ribosomal RNA sequence comparisons demonstrate an evolutionary RT relationship between Zygnematales and charophytes"; RL Unpublished. XX RN [2] RP 1-2209 RA Bhattacharya D.; RT ; RL Submitted (20-AUG-1993) on tape to the EMBL Data Library by: RL D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, RL Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG XX FH Key Location/Qualifiers FH FT source 1..2209 FT /organism="Staurastrum sp." FT /strain="M752, Culture Collection Melakonian, Koeln" FT rRNA join(<1..1775,2182..>2209) FT /product="nuclear encoded 16S-like small subunit ribosomal FT RNA" FT intron 1776..2181 FT misc_feature 1..21 FT /note="PCR primer" FT misc_feature 2185..2209 FT /note="PCR primer" XX SQ Sequence 2209 BP; 572 A; 471 C; 578 G; 588 T; 0 other; BASE COUNT 468 a 372 c 477 g 486 t 4100 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuc-uuu ---------- uauac-ugu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uau)GA GU-UU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-ugga-gga uucggu--c- u--gcc-(ua cc)ggu-u-g ---------- 1801 ---------- -----au-a- -cuguu-ucc -------ucc auccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c g-uccuggac 2161 (uucacu--- ---------- ---------- ---)ggcugg ggcg------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAU -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGCGA-UA -GGACuCUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ac ac--(---a- -uuuau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUa ---cgcgaac a--------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- uguucgcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gucaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUC-g -g-c(----- 5041 --guuua-)g ccggcU-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagccc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --cuccu-gg auc(gaaa-) gguuu----a ggaaau-cuc -ugaaa]--- ---------- 5461 -------uuu cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUcc- 5641 ggu-gaag-- uuu-ucgga- uugc-ggcg- acguggacgg ---------u ---------- 5701 -------(uc gcc---)g-- ---------- ---------- ---------c uguu-ggu-- 5761 gacguu-gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 ---------- -------~|| ||| // LOCUS Geni.spi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74753 LOCUS GS16SRRNA 2173 bp DNA PLN 05-OCT-1993 DEFINITION G.spirotaenia 16S-like small subunit ribosomal RNA ACCESSION X74753 KEYWORDS 16S-like ribosomal RNA. SOURCE Genicularia spirotaenia ORGANISM Genicularia spirotaenia Eukaryota; Plantae; Thallobionta; Chlorophyta; Conjugatophyceae; Zygnematales; Zygnematineae; Desmidiaceae. REFERENCE 1 (bases 1 to 2173) AUTHORS Surek,B., Beemelmanns,U., Melkonian,M. and Bhattacharya,D. TITLE Ribosomal RNA sequence comparisons demonstrate an evolutionary relationship between Zygnematales and charophytes JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2173) AUTHORS Bhattacharya,D. TITLE Direct Submission JOURNAL Submitted (20-AUG-1993) D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG STANDARD full automatic FEATURES Location/Qualifiers source 1..2173 /organism="Genicularia spirotaenia" /strain="329, sammlung von Conjugaten-Kulturen, Hamburg" rRNA join(<1..1775,2146..>2173) /product="nuclear encoded 16S-like small subunit ribosomal RNA" intron 1776..2145 misc_feature 1..21 /note="PCR primer" misc_feature 2149..2173 /note="PCR primer" BASE COUNT 572 a 453 c 571 g 577 t ORIGIN BASE COUNT 478 a 366 c 466 g 493 t 4100 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGCCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaa-uuu ---------- uauac-ugu- aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 gugg<----- ---------- ---------- ---------- ---------u acau---uac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaccauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U UAC|GGGU-G A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUUG- -GCUC(---- ----uuc)GA GU-CC-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA--AAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-uggg-gaa uucggu--c- ug-ccac(uu cg)-gu-ug- ---------- 1801 ---------- -----au-a- -cuaaa-uuc -------cuc auccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ugacg--c a-uuguggcc 2161 (uucauu--- ---------- ---------- ---)gacugg agug------ ---------- 2221 ----cgaac- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAU -GCU-C-UGA AUAAAU-UAG CAUGGAA|UA -ACACCA-UA -GGACuCUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---u|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(---ac uucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----ccGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCUa ---caugaac a--------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- uguucgug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccag- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACC-AUU-g -g-c(----- 5041 --guuua-)g ccaugU-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---uccu-gg auc(gaaa-) ggucu----a gguaau-cuc -ugaaa]--- ---------- 5461 -------auu cau-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AAGUGAucc- 5641 ggu-gaaa-- uuu-uugga- uugc-ggcg- aggcugacgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------c cguu-ggc-- 5761 cacguu-gug -agaa-|gau -aauugaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 ---------- -------~|| ||| // LOCUS Meso.cal 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75763 ID MCDNASRS standard; DNA; PLN; 2203 BP. XX AC X75763; XX DT 12-NOV-1993 (Rel. 37, Created) DT 02-FEB-1994 (Rel. 38, Last updated, Version 11) XX DE M.caldariorum nuclear encoded 16S-like small subunit rRNA gene. XX KW small ribosomal subunit RNA. XX OS Mesotaenium caldariorum OC Eukaryota; Plantae; Thallobionta; Chlorophyta; Conjugatophyceae; OC Zygnematales; Mesotaeniaceae. XX RN [1] RP 1-2203 RA Surek B., Beemelmanns U., Melkonian M., Bhattacharya D.; RT "Ribosomal RNA sequence comparison confirm the evolutionary RT relationship between Zygnematales and charophytes"; RL Plant Syst. Evol. 0:0-0(0). XX RN [2] RC revised by [3] MAT RA Bhattacharya D.; RT ; RL Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. RL D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, RL Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG XX RN [3] RP 1-2203 RA Bhattacharya D.; RT ; RL Submitted (31-JAN-1994) to the EMBL/GenBank/DDBJ databases. RL D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, RL Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG XX FH Key Location/Qualifiers FH FT source 1..2203 FT /organism="Mesotaenium caldariorum" FT /strain="60,Sammlung von Conjugaten-Kulturen (Universitaet FT Hamburg)" FT rRNA 22..1778 FT /product="nuclear encoded 16s like small subunit ribosomal FT RNA" FT primer_bind 1..21 FT intron 1774..2175 FT /note="group I" FT primer_bind 1779..2203 XX SQ Sequence 2203 BP; 562 A; 466 C; 593 G; 582 T; 0 other; BASE COUNT 467 a 362 c 474 g 498 t 4102 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAAU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacuc-uuu ---------- uauac-ugu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--A-UUU --GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCUC(---- ----uuu)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg c-guga-gcg gucggu--c- ug-ccuc(uu cg)-gu-ug- ---------- 1801 ---------- -----aa-c- -uggcc-ucu -------cuu gccuuc-u-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggaca--c g-uucuggcc 2161 (uucauu--- ---------- ---------- ---)ggcugg ggcg------ ---------- 2221 ----uggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGUGA-UA -GGACuCUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(---ac uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUa ---cacgaag a--------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ucuucgug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gucaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GAcu-auu-g -g-c(----- 5041 --guaua-)g ccaugU-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-gg auc(gaaa-) ggucu----g ggaaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gaag-- uuu-augga- uuuu-ggcg- augcacggu- ---------- ---------- 5701 -------(cc gcc---)--- ---------- ---------- ---------- -gcu-ggu-- 5761 gcugcu-gag -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Moug.sca 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X70705 ID MSRRNA standard; DNA; PLN; 2337 BP. XX AC X70705; XX DT 14-APR-1993 (Rel. 35, Created) DT 14-APR-1993 (Rel. 35, Last updated, Version 1) XX DE M.scalaris small subunit ribosomal RNA XX KW 16S-like ribosomal RNA; rRNA; small subunit ribosomal RNA. XX OS Mougeotia scalaris OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Charophyceae; OC Charales. XX RN [1] RP 1-2337 RA Huss V.A.R.; RT ; RL Submitted (21-JAN-1993) on tape to the EMBL Data Library by: RL V.A.R. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 8520 Erlangen, FRG XX RN [2] RP 1-2337 RA Huss V.A.R., Siegler M.L., Kranz H.D.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT source <1..>2337 FT /organism="Mougeotia scalaris" FT misc_feature 1..21 FT /note="PCR amplification primer" FT rRNA 1..2337 FT /product="small subunit rRNA" FT intron 1774..2308 FT /note="group I" FT misc_feature 2313..2337 FT /note="PCR amplification primer" XX SQ Sequence 2337 BP; 601 A; 503 C; 628 G; 602 T; 3 other; BASE COUNT 474 a 363 c 475 g 487 t 4104 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacua-cuu ---------- uguau-ugu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u accu---uac 301 u>AC-CGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aguucauuc -aa|auaucu gc|--CCU-A UCA--ACUU- --GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAAACCGG- -GCUC(---- ---guuc)GA GU-CU-GGUU A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuua-ggg c-ga-g-ggu gcucgg--uc ug-ccgu(uu c-)ggu-ugc ---------- 1801 ---------- --------a- -cuguu-cu- -----acugu cgucuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g g-uucuggcc 2161 (uucauu--- ---------- ---------- ---)ggcugg ggcu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAA -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGCUA-UA -GGACuCgGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -GU-GUUGGU -UU-UC---- -----AG-ga CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-a-g-cg uu--(---ac uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-a u-ug-cca-g ca-ccuc--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUUa ---cgc-gaa ga-------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ucuuygug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gacaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guaua-)g ccaugU-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uucccu-gg auc(gaaa-) ggucu----g ggaaac-cuu -ugaaa]--- ---------- 5461 -------cuu cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUA-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- yuu-aygga- uuuu-ggcg- cagccgacgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------c cgcc-ggc-- 5761 gacgcc-gag -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Zygn.cir 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X79495 LOCUS Z.circum 1805 BP DEFINITION Zygnemopsis circumcarinata Zygnematales,X79495, Bhattacharya etal., NAS,nointron ORIGIN BASE COUNT 466 a 370 c 481 g 486 t 4100 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacucuuuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uac)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAC C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg u-ugga-gcg gucggu--c- u--gcc--uc uacggu-u-g ---------- 1801 ---------- -----a--a- -cuggc-cuc -------gcc auccuu-cu- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--c g-cucuggcc 2161 (uucguu--- ---------- ---------- ---)ggcugg ggcg------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UUC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACGUGA-UA -GGA----cu 2581 cug----g-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-UAUU 2821 -GU-GUUGGU -CU-UC---- -----GGGA- CCG-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(---ac aucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUa ---cgcgaag a--------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ucuucgcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gccaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GAcu-auu-g -g-c(----- 5041 --guaua-)g ccaugU-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-gg auc(gaaa-) ggucu----g ggaaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gaag-- uuu-ucgga- uuuu-ggcg- acgcuggcgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------c sgcn-ggu-- 5761 gacgcc-gag -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS F.hygromet 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X74114 ID FH18SRDNA standard; DNA; PLN; 2896 BP. XX AC X74114; XX DT 27-JUL-1993 (Rel. 36, Created) DT 27-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE F.hygrometrica 18S rDNA, 5.8S rDNA and 25S rDNA XX KW 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; KW internal transcribed spacer; ribosomal RNA. XX OS Funaria hygrometrica OC Eukaryota; Plantae; Embryobionta; Bryophyta; Musci; Funariaceae. XX RN [1] RP 1-2896 RA Capesius I.; RT ; RL Submitted (14-JUL-1993) on tape to the EMBL Data Library by: RL I. Capesius, Botanisches Institut, Im Neuenheimer Feld 360, 69120 RL Heidelberg, FRG XX RN [2] RP 1-2896 RA Sensen C.W., Capesius I.; RT "Funaria hygrometrica: The first 18S rDNA sequence of a moss"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA join(2389..2408,2519..>2896) FT /product="25S ribosomal RNA" FT rRNA 1..1871 FT /product="18S ribosomal RNA" FT source 1..2896 FT /organism="Funaria hygrometrica" FT misc_feature 1872..2096 FT /note="ITS I" FT rRNA 2097..2255 FT /product="5.8S ribosomal RNA" FT misc_feature 2256..2388 FT /note="ITS II" XX SQ Sequence 2896 BP; 737 A; 645 C; 785 G; 729 T; 0 other; BASE COUNT 450 a 374 c 500 g 492 t 4087 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacucuuuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----ucuuug 241 augg<----- ---------- ---------- ---------- ---------u accu---ugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCUU(---- ---uuac)AA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu-ggg ucggg-ggga gcggu--c-- ---cgccccu ugugggug-- ---------- 1801 ---------- -ugc-acugg u-cca-cucg ----gccuuc u--------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------ug ccgg--ggac 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu gguu(uuaac 2161 u----)aau- ---------- ---------- -cgggacg-- cgga------ ---------- 2221 ---g------ --ucggcgau ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCC- ---------- ---------- ---------- ---------- 2521 -UAUGCUCUG AAUA-c-au- UAGCAUGGAA -------|UA -ACGUGA-UA -GGA-----c 2581 ucuu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------g gucc|UGUUC 2821 -GU-GUUGGU -CU-UC---- ------ggg- accg-gaGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGGc UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AUUCGAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-ug uu--(----a cuuugau--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUua c--gcgaagg a-------uu uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ----uccuuu gcg--gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-c(----- 5041 --gucua-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccuggg ccg(aua--) cggu-----g gguaau-cuu uugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-uggucc- 5641 ggu-gagg-u uu-ucgga-u ugc-ggcg-a uc--gcgg-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------ccg ccgg-ugac- 5761 guu----ggg -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uug----- -------~|| ||| // LOCUS Z.mays 5903 bp RNA RNA 01-JUL-1985 DEFINITION Zea mays (maize); 17S ribosomal RNA; ribosomal RNA. ACCESSION K02202 KEYWORDS 17S ribosomal RNA; ribosomal RNA. SOURCE Zea mays (maize). ORGANISM Zea mays (maize). REFERENCE 1 (bases 1 to 2215) AUTHORS Messing,J., Carlson,J., Hagen,G., Rubenstein,I. and Oleson,A. TITLE Cloning and sequencing of the ribosomal RNA genes in maize: JOURNAL DNA 3, 31-40 (1984) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5903) Corresponding GenBank entry: K02202 Phylo:Eukaryotes,Plant The 5' and 3' ends of the maize 17S rRNA were identified by comparing with yeast, Xenopus, and rat 18S rRNA sequences. There are about 10,000 copies of the rRNA genes in maize. NCBI gi: 168608 BASE COUNT 447 a 419 c 504 g 439 t 4094 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGC-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cgaacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uacgugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGGG G)CCU-ACCA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCGC(---- ---guua)GU GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggg ccggg-c-cg ggugc--c-g c-cgccguac ggg--cag-- ---------- 1801 ---------- --aa-ccgac c-g---gcuc -gacccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugc cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu ggcc(uuaac 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccgggc- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------CGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCA ---------- ---------- ---------- ---------- 2521 ---UCGCUCU GGAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -GU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g---ug uu--(---ac uaauag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-cg-cug-g ccaccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagc-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG*GU- GGU-G-CAUG |GUC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CcU-GC UAAcUAGcua u--gcggag- ---------c cauc-c---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------cu ccguaguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --guuua-)g gccg-C-G-A AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ccaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gaca-) ggcc------ gguaau-cuu gggaaa]--- ---------- 5461 -------uuu caugc-g--- uGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-g cuc-ggcc-g cac-cgg--- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------ccg cccc-cgacc 5761 guccg--ccg -agaa-|guc -cauugaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS D.winteri 5903 bp RNA RNA 11-JAN-191 DEFINITION Drimys winteri Forster. ACCESSION No information KEYWORDS No information. SOURCE Drimys winteri Forster. ORGANISM Drimys winteri Forster. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24089 LOCUS DRIRG18S 1763 bp ds-DNA PLN 26-AUG-1994 DEFINITION Drimys winteri Forster and Forster f. 18S ribosomal RNA (18S rRNA) gene, 5' end. ACCESSION L24089 KEYWORDS 18S ribosomal RNA. SOURCE Drimys winteri DNA. ORGANISM Drimys winteri Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Magnoliidae; Magnoliales; Winteraceae. REFERENCE 1 (bases 1 to 1763) AUTHORS Nickrent,D.L. TITLE Molecular phylogenies of angiosperms JOURNAL Ann. Missouri Bot. Garden (1994) In press STANDARD full automatic COMMENT NCBI gi: 532577 FEATURES Location/Qualifiers source 1..1763 /organism="Drimys winteri" /sequenced_mol="DNA" rRNA 1..>1763 /gene="18S rRNA" /note="complete 18S sequence except for ca.45 bases at 3' end; ds PCR product" /product="18S ribosomal RNA" BASE COUNT 441 a 379 c 475 g 459 t 9 others ORIGIN BASE COUNT 441 a 379 c 475 g 459 t 4149 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaucuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACUA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GUCC(---- ----uuc)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggg augga-a-cg aucgg--u-c c-gc-cucug g-gugug--- ---------- 1801 ---------- --ca-ucggu u-gcc-u-c- -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uac cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu ggcc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccggugc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCcc ---------- ---------- ---------- ---------- 2521 ---AAGCUCU GUAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-CA -GGA----uu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -AU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ug-cug-g ca-ccuu--- ---------- ----auga(- 3661 gaaa-)uca- -aAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGcua u--guggagg ---------u cac------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ccu ccacggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUG-G -C-C(----- 5041 --guuua-)g gcca-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gaca-) ggccc----g gguaau-cuu ugaaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCRU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG--GC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u ugc-ggcg-a cgu-gggugg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------ccg ccca-ugau- 5761 guu----gcg -agaa-|guc -cacugaacc uu-auc-a-u uuag-AGGAA GG-AGAA~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS H.sibthorp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16605 ID HS18SRRN standard; RNA; PLN; 1735 BP. XX AC X16605; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Hydrocotyle sibthorpioides 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Hydrocotyle sibthorpioides OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Apiales; Apiaceae. XX RN [1] RP 1-1735 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1735 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1735 BP; 397 A; 362 C; 454 G; 431 T; 91 other; BASE COUNT 397 a 362 c 454 g 431 t 4259 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnCCU GGU(UGA)UC CU|GCCAGn- A-GUCA-Unn --GCUUGUCU 61 UAAA|-GAUU AA-GCUAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacun-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-uguu-- ----uguunn 241 augg<----- ---------- ---------- ---------- ---------- ---uncuugc 301 u>NCUCGG-A UAACCGUNG( -U-AAUU)CU NGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACUA U-|GGUGG-U GAC|GGGU-N A-CGGA|GAA -U-(UAGG-) 1201 GUN-CGAUU- CCG|GANANN G-AGCC(U-G AGAAAC)GGC UnCC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-NN- NNAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|N|NUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uuc)GA GU-CU-GGUN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGNN C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCn-GC -AGCC|GC-G Gn-nA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U NUUUN--AGU UGNNG-CAG| UUA--AAAAG CUCGUNGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggg uuggg-u-cg gucgg--u-c c-gc--uuac g-gu-gug-- ---------- 1801 ---------- --ua-ccnau c-g---ucuc -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugc cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu gucc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c gcug------ ---------- 2221 ---------- --uccggngc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---NCGCUCU GUAUAC-AU- UNGCAUGGGA -------|UN -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UNUU 2821 -AC-GUUGGC -CU-UC---- ------GGU- AUC-GGAGUA A--UGAUUAC CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGN|CAGU ---------- 3001 --CNCGNGNN UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAANGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gug-g-a-ug uu--(---gc uuauag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUN-AAACUU -AAAG--GAA -UUG|NN-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACU~~~-~~ )~GGG--GAA ACUUACCAGG GC[nag-aca 4081 uagu-aagga ungacaga(c ugagagc)-- --ucuuucuu gauu-cunug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GN- GGU-G-CAUG |GC-|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-RA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC URAAUAGCua u--guggag- -------gcg cag------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cuc cacg-gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------GCUU AGAGG]---- --|------- ---------- GACU-Rug-- -c-c(----- 5041 --unuua-)g gcca-C-GGA AGUN-UGAGG CAA------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- -|----|--- 5221 n-AGA-UGUU CUNN-NN-NC A-CGCGCGCU ACACU--N-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-u- gcc(gaca-) ggccc----g ggnnau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGNNG-NAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUNCNN UU|UGUA-CA CACCGCNNNU CGCUCN-N-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u ugc-ggcg-a cgu-gggcgg ---------- ---------- 5701 -------(-u ------)--- ---------- ---------- -------cug cccg-cgac- 5761 guc----gaa -agaa-|guc -cacugaacc nu-auc-a-u uuag-AGGAA GG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS H.helix 5903 bp RNA RNA 11-JAN-191 DEFINITION Hedera helix. ACCESSION No information KEYWORDS No information. SOURCE Hedera helix. ORGANISM Hedera helix. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16604 ID HH18SRRN standard; RNA; PLN; 1759 BP. XX AC X16604; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Hedera helix 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Hedera helix OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Apiales; Araliaceae. XX RN [1] RP 1-1759 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1759 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1759 BP; 414 A; 362 C; 462 G; 435 T; 86 other; BASE COUNT 414 a 362 c 462 g 435 t 4230 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnCU GGU(UGA)UC CU|GCCAnn- A-GUCA-Unn --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----ygunnn 241 augg<----- ---------- ---------- ---------- ---------- ---uaucugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UNCGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACUA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GANAGN G-AGCC(U-G AGAAAC)GGC UnnC-ACAUC (CAAG-)GAn 1261 -GGCAGC-A- ---------| GGC-GC-GC- NNAUU-ACCC -AAUCCU-G( ---acn--)C 1321 GGGG-ACGGU -|N|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----aau)GA GU-CU-GGUN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gn-nA)UUCC AG-|CUUCAA 1621 U-AGNGNA|U NUUUA--AGU UGNNG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggg uuggg-u-cg gccng--u-c c-gc--cucn g-gu-gug-- ---------- 1801 ---------- --ca-ccgau c-g---ucuc -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugc cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu gucc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c ngyg------ ---------- 2221 ---------- --uccggcgc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GGAUAC-AU- UNGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -AC-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUCA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAANGAAA 3301 GUUGCGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gug-g-a-ug uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-nuu gGNU|-U|N- CGAGGGGAGU AU--NG-UC( --GCAA-)GG 3721 CUN-AAACUU -NAAG--GAA -UUG|NN-NG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GN|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACU~~~-~~ )~GGG--GAA ACUUACCAGG UN[nag-aca 4081 uagu-aagga ungacaga(c ugagagc)-- --unuuucuu gauu-cnnug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- NGU-G-CAUG |GCN|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC URAAUAGCua u--guggag- -------gun unn------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cun cnnn-gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------GCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-g(----- 5041 --cuuua-)g gcca-C-GGA AGUN-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|Cn- 5221 n-AGA-UGUU CUGG-GC-NC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-u- gcc(gaca-) ggccc----g ggnnau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGNNG-NAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUYGY-G-U -UGACUACG- 5581 U-CCCUNCCC UU|UGUA-CA CACCGNNNGU CGCNCU-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u ugc-ggcg-a cgu-gggcgg ---------- ---------- 5701 -------(uy ------)--- ---------- ---------- -------cug cccg-cgac- 5761 guc----gaa -agaa-|guc -cacugaacc uu-auc-a-u uuag-AGGAA NG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS C.florida 5903 bp RNA RNA 11-JAN-191 DEFINITION Cornus florida. ACCESSION No information KEYWORDS No information. SOURCE Cornus florida. ORGANISM Cornus florida. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X17370 ID CF18SRRN standard; RNA; PLN; 1757 BP. XX AC X17370; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE C.florida 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Cornus florida OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Cornales. XX RN [1] RP 1-1757 RA Nickrent D.L.; RT ; RL Submitted (20-DEC-1989) on tape to the EMBL Data Library by: RL Nickrent D.L., University of Illinois, Department of Plant Biology, RL 505 S.Goodwin Ave., Urbana , IL 61801, USA. XX RN [3] RP 1-1757 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1757 BP; 407 A; 375 C; 453 G; 436 T; 86 other; BASE COUNT 407 a 375 c 453 g 436 t 4232 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnCCn GGU(UGA)UC CU|GCCAGn- A-GUCA-UAn --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -caaacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguunn 241 augg<----- ---------- ---------- ---------- ---------- ---uaccugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UNA- UNCGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUNGUG G)CCU-ACUA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGN G-AGCC(U-G AGAANC)GGC UnCC-ACAUn (CAAG-)nnn 1261 -GGCAGC-A- ---------| GGC-GC-GC- NNAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACN AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----auu)GA GU-CU-NGNN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-NA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U NUUUA--AGU UGUNG-CAG| UUN--NAAAG CUNGUAGUUN |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ngg uuggg-c-cg accgg--u-c c-gc--uucc n-gu-gug-- ---------- 1801 ---------- --ca-ucggu n-g---ucuc -guccnuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugu cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu ngcc(uuaac 2161 u----)ggc- ---------- ---------- -cnggu---c gug------- ---------- 2221 ---------- ---ccggcgc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GUAUAC-AU- UNGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UNUU 2821 -AC-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCN UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAANGAAA 3301 GUUGGGGGC- UCGAAGAYG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUCG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CNNGGGGAGU AU--NG-UC( --GCAA-)GN 3721 CUN-AAACUU -NAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACU~~A-CN )CGGG--GAA ACUUACCAGG UN[nag-aca 4081 uagu-aagga ungacaga(c ugagagc)-- --ucuuucuu gauu-cuann gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UN-GU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCua u--guggag- --------gu auc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cuc cacr-gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------NCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --nncca-)g gcca-C-GGA AGUU-UGAGG CAAUAU--SA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCn|nn- 5221 n-AGA-UGUU CUGG-GC-NC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gaca-) ggccc----g ggunau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGANG-AAU U--CCUAGUA AC--GC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUNCCC UU|UGUA-CA CACUGNNNNU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggcnn ---------- ---------- 5701 -------(nn cg----)--- ---------- ---------- -------cug ccgg-cgac- 5761 guc----rcg -agaa-|guc -cacunaacc nn-auc-a-u uung-AGGAN NG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS C.racemosa 5903 bp RNA RNA 11-JAN-191 DEFINITION Cornus racemosa. ACCESSION No information KEYWORDS No information. SOURCE Cornus racemosa. ORGANISM Cornus racemosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16602 ID CR18SRRN standard; RNA; PLN; 1758 BP. XX AC X16602; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Cornus racemosa 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Cornus racemosa OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Cornales. XX RN [1] RP 1-1758 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1758 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1758 BP; 415 A; 384 C; 473 G; 436 T; 50 other; BASE COUNT 415 a 384 c 473 g 436 t 4195 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnCU GGU(UGA)UC CU|GCCAGn- A-GUCA-yAn --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguunn 241 augg<----- ---------- ---------- ---------- ---------- ---uaccugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUNGUG G)CCU-ACUA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAUC)GGC UnCC-ACAUC (CAAG-)nnn 1261 -GGCAGC-A- ---------| GGC-GC-GC- NNAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|N|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----auu)GA GU-CU-GGUN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GN-NA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U NUUUA--AGU UGUNG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggg uuggg-c-cg accgg--u-c c-gc--u-nc cggu-gug-- ---------- 1801 ---------- --ca-ucggu c-g---ucuc -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugu cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu ggcc(uuaac 2161 u----)ggc- ---------- ---------- -cgggu---c gug------- ---------- 2221 ---------- --uccggcgc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GUAUAC-AU- UNGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UNUU 2821 -AC-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGSGCN UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUN-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACU~AA-CA )CGGG--GAA ACUUACCAGG UC[nag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cunun gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCua u--gggagg- ---------- uac------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ccuc cacg-gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------NCUU AGAGG]---- --|------- ---------- GACU-Can-n -n-n(----- 5041 --nnnna-)g gccA-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCn|nU- 5221 n-AGA-UGUU CUGG-GC-NC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gaca-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG--GC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggcgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------cug ccgg-cgac- 5761 guc----gcg -agaa-|guc -cacugaacc uu-auc-a-u uung-AGGAN NG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS N.sylvatic 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16603 ID NS18SRRN standard; RNA; PLN; 1751 BP. XX AC X16603; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Nyssa sylvatica 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Nyssa sylvatica OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Cornales. XX RN [1] RP 1-1751 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1751 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1751 BP; 406 A; 362 C; 452 G; 435 T; 96 other; BASE COUNT 406 a 362 c 452 g 435 t 4248 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnCCn nGU(UGA)UC CU|GCCAGn- A-GUCA-UAn --GCUUGUCn 61 nAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacun-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguuun 241 augg<----- ---------- ---------- ---------- ---------- ---uaucukc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACUA U-|GGUGU-Y GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CMG|GAGAGN G-AGCC(U-G AGAAUC)GGC UnCC-ACAUs (CAAG-)Gnn 1261 -GGCAGC-A- ---------| GGC-GC-GC- NNAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|N|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUN(---- ---uuuu)GA GU-CU-GGUN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCn-GC -AGCC|GC-G Gn-nA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U NUUUA--AGU UNNNG-CAG| UUN--NAAAG CUNGUAGUUN |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggg uuggg-u-ng accng--u-c c-gcc---un ungu-gug-- ---------- 1801 ---------- --ca-ccnnn n-g---ucun -guccc-uu- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uun cugc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g----cuucu ngcc(uuaau 2161 u----)ggc- ---------- ---------- -cnggu---c gug------- ---------- 2221 ---------- --uccggunc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GGAUAC-AU- UNGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UNUU 2821 -AC-GUUGCG -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA NN--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -NNGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GNNNGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -NCUNG|UCU CA--ACC-AU NAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGNN-nnu gGGU|-U|N- CNNNGGGAGU AU--GG-UC( --GCAA-)GN 3721 CUN-AAACUU -NAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACU~~A-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga ungacaga(c ugagagc)-- --ucuuucuy gauu-cyaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UN-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCua u-----gagg ---------u nac------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ccuc cacg-gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------NCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c--(----- 5041 --uggca-)g gcca-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|Ck- 5221 n-AGA-UGUU CUGG-GC-NC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-u- gcc(gaca-) ggccc----g ggunau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGANG-AAU U--CCUAGUA AG--GC-GAG (-UCAUCAG- )CUCGY-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACUGCNNNU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggggg ---------- ---------- 5701 -------(-u ------)--- ---------- ---------- -------ccg ccgg-cgac- 5761 guc----gcg -agaa-|guc -cacugaacc uu-auc-a-u uung-AGGAN NG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS C.gronovii 5903 bp RNA RNA 11-JAN-191 DEFINITION Cuscuta gronovii Willd.. ACCESSION No information KEYWORDS No information. SOURCE Cuscuta gronovii Willd. ORGANISM Cuscuta gronovii Willd. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24747 LOCUS CUWG18S 1764 bp ds-DNA PLN 26-AUG-1994 DEFINITION Cuscuta gronovii Willd. 18S ribosomal RNA (18S rRNA) gene, 5' end. ACCESSION L24747 KEYWORDS 18S ribosomal RNA. SOURCE Cuscuta gronovii DNA. ORGANISM Cuscuta gronovii Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Polemoniales; Cuscutaceae. REFERENCE 1 (bases 1 to 1764) AUTHORS Nickrent,D.L. TITLE Molecular phylogenies of angiosperms JOURNAL Ann. Missouri Bot. Garden (1994) In press STANDARD full automatic COMMENT NCBI gi: 532575 FEATURES Location/Qualifiers source 1..1764 /organism="Cuscuta gronovii" /sequenced_mol="DNA" rRNA 1..>1764 /gene="18S rRNA" /note="complete 18S sequence except for ca.44 bases at 3' end; ds PCR product" /product="18S ribosomal RNA" BASE COUNT 447 a 354 c 476 g 482 t 5 others ORIGIN BASE COUNT 447 a 354 c 476 g 482 t 4144 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GGUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacaa-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- aau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuac 301 u>ACUCGG-A UAACCGUAG( -U-AAAU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCUC(---- ---uugu)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UC-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuugaga uggguuugcc ggu-c----- --cgcc-u-- -----caugg ugugc----- 1801 ---------- --au--cg-- ---uugaacu ugucucuau- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugc uggu---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gu g----cuccu gguc(uuaau 2161 u----)gau- ---------- ---------- -cgggu---c augc------ ---------- 2221 ---c------ --uccagugc u--------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------guu acuuug-aag a--aauuaga 2461 gugcucaa-a g--caagccu a--------- ---------- ---------- ---------- 2521 ----cgcucu guauac-au- uagcauggga -------|ua -acauua-ua -ggau---uu 2581 c-ga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-uauu 2821 -au-guuggc -cu-uc---- ------ggg- auc-ggagua a--ugauuaa ca--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--UGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-cg gug-g-a-ug uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ua-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUc-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG Uc[cagacau 4081 agu--aagga uugacaga(u ugagagc)-- --ucuuucga gauu-cuaug ggu----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|-G-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCua u--gcgaagg u--------- -auc-ccuu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -cguggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-ACG-G -C-C(----- 5041 --uuuca-)g gccg-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa ugagcgu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gaua-) gguuc----g gguaau-cuu u-gaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gaag-u gu-ucgga-u cgu-ggcg-a ugu-gggugg ---------- ---------- 5701 -------(uu ug----)--- ---------- ---------- -------cug ccug-cgac- 5761 guu----gug -agaa-|guc -cauugaacc uu-auc-a-u uuag-AGGAA GG-AG~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.sempervi 5903 bp RNA RNA 11-JAN-191 DEFINITION Buxus sempervirens. ACCESSION No information KEYWORDS No information. SOURCE Buxus sempervirens. ORGANISM Buxus sempervirens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16599 ID BS18SRRN standard; RNA; PLN; 1747 BP. XX AC X16599; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Buxus sempervirens 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Buxus sempervirens OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Euphorbiales; Buxaceae. XX RN [1] RP 1-1747 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1747 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1747 BP; 403 A; 363 C; 455 G; 413 T; 113 other; BASE COUNT 403 a 363 c 455 g 413 t 4269 others ORIGIN 1 |~~~~~~~~~ ~~~~~nACCU GGU(UGA)UC CU|GCCAGn- A-GUCA-CAn --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguunn 241 augg<----- ---------- ---------- ---------- ---------- ---uaccugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-U GNC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GANAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- NNAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uac)GA GU-CU-GGUN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gn-nA)UUCC AG-|CUCCAA 1621 U-AGCGUA|N NUUUA--AGU UGNNG-CAG| UUN--NAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gacuuu-ggg unggg-u-cg accng--u-c c-gc--cycg cggu-gug-- ---------- 1801 ---------- --ca-ccggn n-g---ucuc -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugc cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----uuccu ggcc(uynau 2161 u----)gac- ---------- ---------- -cgggu---c ggrg------ ---------- 2221 ---------- ---ccggcgc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GGAUAC-AU- UNGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UNUU 2821 -AC-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGNN UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAANGAAA 3301 GUUGGGGGY- YYGAAGNCG( AUYA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CU-U -CCUNG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gug-g-a-us uu--(---gc uuuuac---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUY-uuu gGGU|-U|C- CGGGGGGNGU AU--GG-UC( --GCAA-)GG 3721 CUN-AAACUU -AAAG--GNA -UUG|AC-GG -NN-GGGCN- -CCNC-CNGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACU~~~-~~ )~GGG--GAA ACUUACCAGG UN[nag-aca 4081 uagu-aagga nngacaga(c ugagagc)-- --unuuucun nauu-nnnnn gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UN-NN- NNU-G-CAUG |GCN|NU-UC UUA|GUUGG- U|GGA(-GCn 4261 A-)UUNGUC- -UNG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCua u--gagg--- -------ugc ccu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------c cacg-gcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------NCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --gnuua-)g gcca-C-GGA AGUU-UGAGG CAAUAA--Cn GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|nn- 5221 n-AGA-UGUU CUGG-GN-NC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-u- gcn(gaca-) ggccc----g ggnnau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 NCNNNG-UAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-Y -UGACUACG- 5581 U-CCCUGCCN NU|UGUA-CA CACUGCNNGY CGCUCN-N-A CC-NAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggca-- ugu-gggcnn ---------- ---------- 5701 -------(ng cg----)--- ---------- ---------- ---------- -can-gcga- 5761 guc----gcg -agaa-|guc -cacuraacc nn-auc-a-u uuag-AGGAA GG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS A.thalia.1 5903 bp RNA RNA 10-APR-1991 DEFINITION Arabidopsis thaliana; 18S ribosomal RNA; ribosomal RNA; ribosomal RNA gene. ACCESSION X16077 KEYWORDS 18S ribosomal RNA; ribosomal RNA; ribosomal RNA gene. SOURCE Arabidopsis thaliana. ORGANISM Arabidopsis thaliana. REFERENCE 1 (bases 1 to 1902) AUTHORS Gruendler,P. JOURNAL Nucleic Acids Res. 17, 7513-7513 (1989) STANDARD No information REFERENCE 2 (bases 1 to 1902) AUTHORS Unfried,I., Stocker,U. and Gruendler,P. TITLE Nucleotide sequence of the 18s rRNA gene from Arabidopsis thaliana Co10 JOURNAL Nucleic Acids Res. 17, 7513-7513 (1989) STANDARD full automatic COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16077 x16077 Nucleic Acids Research 17:7513 1989 bases 1-163 of overlap bases 5125-5287 of . Data kindly reviewed (18-OCT-1989) by Gruendler P. NCBI gi: 16506 BASE COUNT 453 a 392 c 495 g 464 t 4099 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacga-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaacuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ---uuuc)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg auggg-u-cg gccgg--u-c c-gc-c-uuu g-gu-gug-- ---------- 1801 ---------- --ca-uuggu c-g---gcuu -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ggu cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g----cuccu gguc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccggcgc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GGAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -GU-GUUGGC -UU--C---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuauag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG*GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGcua c--guggagg ---------c auc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ccu ucacggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --guuua-)g gcca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -acaccu-u- gcc(gaca-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggugg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------ccg cccg-cgac- 5761 guc----gcg -agaa-|guc -cacuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG----- -------~|| ||| // LOCUS A.thalia.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Arabidopsis thaliana. ACCESSION No information KEYWORDS No information. SOURCE Arabidopsis thaliana. ORGANISM Arabidopsis thaliana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X52322 ID ATRDNAF standard; DNA; PLN; 10014 BP. XX AC X52322; XX DT 01-AUG-1991 (Rel. 28, Created) DT 07-MAY-1992 (Rel. 31, Last updated, Version 4) XX DE A.thaliana rRNA repeat unit, most frequent IGR type XX KW 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA. XX OS Arabidopsis thaliana OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Dilleniidae; Capparales; Brassicaceae. XX RN [1] RP 1-10014 RA Unfried I.; RT ; RL Submitted (25-APR-1990) on tape to the EMBL Data Library by: RL Unfried I., Institute of Botany , University of Vienna, Rennweg 14, RL A 1030 Vienna, Austria. XX CC *source: strain=Co10; CC *source: clone_library=EMBL3 part. Sau3AI digest; XX CC [1] assembled the sequence from x15550, x16077, x52637 and x52320 XX FH Key Location/Qualifiers FH FT promoter 963..1063 FT /note="put. spacer promoter" FT promoter 2202..2301 FT /note="put. gene promoter" FT rRNA 4129..5932 FT /product="18S rRNA" FT rRNA 6201..6364 FT /product="5.8S rRNA" FT rRNA 6552..9926 XX SQ Sequence 10014 BP; 2488 A; 2280 C; 2919 G; 2327 T; 0 other; last bit of sequence on next line caattctacacaagtgtttctacactaacaaagcaacagctccttaacgaattc BASE COUNT 453 a 392 c 495 g 464 t 4099 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacga-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaacuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ---uuuc)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg auggg-u-cg gccgg--u-c c-gcc--uuu g-gugug--- ---------- 1801 ---------- --ca-uuggu c-ggc-u-u- -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ggu cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g----cuccu gguc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccggcgc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCcu ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GGAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -GU-GUUGG- -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuauag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGcua c--guggagg ---------c auc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ccu ucacggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --guuua-)g gcca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -acaccu-u- gcc(gaca-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUcc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggugg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------ccg cccg-cgac- 5761 guc----gcg -agaa-|guc -cacuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS S.alba.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X17062 ID SINARRNA standard; DNA; 5500 BP. XX X17062; DT 11-MAR-1990 (annotation) XX DE Mustard 18S and 25S rRNA genes XX KW 18S ribosomal RNA; 25S ribosomal RNA; ribosomal RNA. XX OS Sinapis alba (mustard) OC Eukaryota; Planta; Spermatophyta; Magnoliopsida; Dilleniidae; OC Capparales; Brassicaceae. XX RN [1] (bases 1-5500) RA Capesius I.; RT ; RL Submitted (24-OCT-1989) on tape to the EMBL Data Library by: RL Capesius I., Botanisches Institut, 6900 Heidelberg, Im Neuenheimer RL Feld 360, FRG. XX RN [2] (bases 1-5500) RA Rathgeber J., Capesius I.; RT "Nucleotide sequence of the intergenic spacer and the 18S RT ribosomal RNA gene from mustard (Sinapis alba)."; RL Nucleic Acids Res. 18:1288-1288(1990). XX CC *source: developmental stage=adult; tissue=bud; CC For overlapping sequences see and . XX FH Key From To Description FH FT RRNA 1 486 25S rRNA FT SITE 487 3690 intergenic spacer FT RRNA 3691 5494 18S rRNA FT SITE 5495 5500 internal transcribed spacer XX SQ Sequence 5500 BP; 1406 A; 1311 C; 1404 G; 1379 T; 0 other; BASE COUNT 452 a 390 c 494 g 468 t 4099 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacga-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaacuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----auu)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg auggg-u-cg cccgg--u-c c-gc--guu- uggu-gag-- ---------- 1801 ---------- --ca-ccggu c-g---gcuu -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugu cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g----cuccu ggcc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccggcgc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GUAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -GU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GGACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAAG UC[cag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG*GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGcua c--guggag- --------gc auc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ccu ucacggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --guuua-)g gcca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GC-GC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -acaccu-ug guc(gaca-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gaag-u ac-ucgga-u cgc-ggcg-a cgu-gggugg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------ccg uccg-cgac- 5761 guc----gcg -agaa-|guu -uucuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS S.alba.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X66325 LOCUS SALRIBRNA 9003 bp ds-DNA PLN 14-JUL-1992 DEFINITION S.alba 18S, 5.8S & 25S rRNA genes ACCESSION X66325 KEYWORDS 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; ribosomal RNA. SOURCE Sinapis alba DNA. ORGANISM Sinapis alba Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Dilleniidae; Capparales; Brassicaceae. REFERENCE 1 (bases 1 to 9003) AUTHORS Capesius,I. TITLE The ribosomal gene from Sinapis alba. JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: stage=adult plant; *source: tissue=bud; See also X17062 & X57137 From EMBL entry SARIBRNA; dated 03-JUN-1992. FEATURES Location/Qualifiers misc_RNA 1..294 rRNA 295..2098 /gene="18S rRNA" misc_RNA 2099..2363 rRNA 2364..2526 /gene="5.8S rRNA" misc_RNA 2527..2714 rRNA 2715..6095 /gene="25S rRNA" misc_RNA 6096..9003 BASE COUNT 2248 a 2172 c 2464 g 2119 t ORIGIN BASE COUNT 452 a 390 c 494 g 468 t 4099 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacga-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaacuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----auu)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg auggg-u-cg cccgg--u-c c-gcg--uuu g-gugag--- ---------- 1801 ---------- --ca-ccggu c-ggc-u-u- -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugu cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g----cuccu ggcc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccggcgc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GUAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -GU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GGACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAAG UC[cag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGcua c--guggagg ---------c auc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ccu ucacggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --guuua-)g gcca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GC-GC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -acaccu-ug guc(gaca-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUcc- 5641 ggu-gaag-u ac-ucgga-u cgc-ggcg-a cgu-gggugg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------ccg uccg-cgac- 5761 guc----gcg -agaa-|guu -uucuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS E.alatus 5903 bp RNA RNA 11-JAN-191 DEFINITION Euonymus alatus. ACCESSION No information KEYWORDS No information. SOURCE Euonymus alatus. ORGANISM Euonymus alatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16600 ID EA18SRRN standard; RNA; PLN; 1757 BP. XX AC X16600; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Euonymus alatus 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Euonymus alatus OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Celastrales; Celastraceae. XX RN [1] RP 1-1757 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1757 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1757 BP; 418 A; 368 C; 457 G; 446 T; 68 other; BASE COUNT 418 a 368 c 457 g 446 t 4214 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnCCU sGU(UGA)UC CU|GCCAGy- A-GUCA-UAy --GCwUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguunn 241 augg<----- ---------- ---------- ---------- ---------- ---uaucuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUANAG G)CCU-ACUA U-|GGUAU-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAUC)GGC UnCC-ACAUn (CAAn-)nnn 1261 -GGCAGC-A- ---------| GGC-GC-GC- NNAUU-ACCC -NAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|N|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----aau)GA GU-CU-GGUN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-ACCGUA|U NUUUA--AGU UGNNG-CAG| UUN--NAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucua-ggg uuggg-u-cg ancgg--u-c c-gc--cuuu cggu-gug-- ---------- 1801 ---------- --ca-ccuuu c-c---uc-- -gucccuun- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugg cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu gguc(uuaac 2161 u----)gaa- ---------- ---------- -cgggu---c guuc------ ---------- 2221 ---------- --uccggugc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GGAUAC-AU- UNGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -CU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GRGYGAAA 3301 GUUGGRGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CR-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUN-nnu gGGU|-U|C- CGGGGGGAGU NU--GG-UC( --GCAA-)NN 3721 CUN-AAACUU -NAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUA~~-~~ )nGGG--GAA ACUUACCAGG UN[nag-aca 4081 uagu-aagga ungacaga(c ugagagc)-- --ucuuucuu gauu-cunug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAcgua c--gcgaag- -------gaa una------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cuc cgcg-gnu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------NNUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --gcuua-)g gcca-C-GGA AGUU-UGAGG CAAUAU--GA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 n-AGA-UGUU CUGG-GC-NC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-u- gcc(gaca-) ggccc----g ggunau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUG-A 5521 ACGANG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUAGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACUNNNNNU CGCUCC-U-A CC-NAU--UG AA-UGGucc- 5641 ggu-gaag-u ru-ucgga-u ucc-ggcg-a cgu-gggcgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------cug ccgg-cgac- 5761 guc----rcg -agaa-|guc -cacunaacc uu-auc-a-u uung-AGGAN NG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS A.glutinos 5903 bp RNA RNA 11-JAN-191 DEFINITION Alnus glutinosa. ACCESSION No information KEYWORDS No information. SOURCE Alnus glutinosa. ORGANISM Alnus glutinosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X54984 ID AG18SRDN standard; DNA; PLN; 1698 BP. XX AC X54984; XX DT 17-JUN-1991 (Rel. 28, Last updated, Version 1) DT 17-JUN-1991 (Rel. 28, Created) XX DE A.glutinosa rDNA for 18S ribosomal RNA XX KW 18S rDNA; 18S ribosomal RNA; ribosomal RNA. XX OS Alnus glutinosa OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Hamamelidae; Fagales; Betulaceae. XX RN [2] RP 1-1697 RA Savard L., Lalonde M.; RT "Sequence of 18S rDNA of actinorhizal Alnus glutinosa RT (Betulaceae)"; RL Plant Mol. Biol. 16:725-728(1991). XX RN [3] RP 1-1698 RA Savard L.; RT ; RL Submitted (31-OCT-1990) on tape to the EMBL Data Library by: RL L. Savard, UNIVERSITE LAVAL, C.R.B.F., PAVILLON ABITIBI-PRICE, CITE RL UNIVERSITAIRE, STE-FOY, QUEBEC G1K 7P4, CANADA XX CC *source: strain=Gaertner; CC *source: stage=3 year old tree; CC *source: tissue=leaves; CC *source: cell_type=somatic; CC *source: clone=Ag8; XX FH Key Location/Qualifiers FH FT rRNA 1..1698 FT /gene="18S rDNA" /product="18S ribosomal RNA - FT small subunit" XX SQ Sequence 1698 BP; 423 A; 374 C; 467 G; 433 T; 1 other; BASE COUNT 423 a 374 c 467 g 433 t 4206 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |-------(- ---)[----- 121 ---------- --------nn nnnnnnnnnn ---------- -nn-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaucugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACUA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ---uuau)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuu-ggg uuggg-c--a gaucg--g-u c-cgc-cc-c uggu-gug-- ---------- 1801 ---------- --ca-ccggg c-u-----cn -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uac cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g----cuccu gguc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccggugc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GUAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -CU-CUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAC-UG -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(UGAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---ga uuucag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUUcuuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 ACGUGC-G|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GU UAACUAGcua u--cggagg- ---------u gac------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ccu ccgcggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --gcuua-)g --ca-c-GG- AGUU-UGAGG CAAUAA--CA GG-------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UUGC|CU- 5221 U-AGA-UGUU CUGG-GC-GC A-CUCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gaca-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUA-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggcgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------cug ccgg-cgac- 5761 guc----gca -gaaa-|guc -cacugaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-C-G CGUnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS B.papyrife 5903 bp RNA RNA 11-JAN-191 DEFINITION Betula papyrifera. ACCESSION No information KEYWORDS No information. SOURCE Betula papyrifera. ORGANISM Betula papyrifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L00971 LOCUS BELRR18SA 1709 bp ss-rRNA RNA 30-DEC-1993 DEFINITION Betula papyrifera small ribosomal subunit RNA (18S rRNA). ACCESSION L00971 KEYWORDS 18S ribosomal RNA; ribosomal RNA small subunit. SOURCE Betula papyrifera mature leaves rRNA. ORGANISM Betula papyrifera Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Hamamelidae; Fagales; Betulaceae. REFERENCE 1 (bases 1 to 1709) AUTHORS Savard,L., Li,P., Strauss,S.H., Michaud,M., Chase,M.W. and Bousquet,J. TITLE Chloroplast rbcL and nuclear gene sequences indicate pennsylvanian time for the last common ancestor of extand seed plants JOURNAL Unpublished (1992) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Savard,L., Martin,M. and Bousquet,J. TITLE Genetic diversity and phylogenetic relationship between birches and alders using ITS, 18S rRNA and rbcL gene sequences JOURNAL Mol. Phylog. Evol. 2, 112-118 (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1709 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1709 /organism="Betula papyrifera" /cell_type="somatic" /dev_stage="mature" /haplotype="diploid" /sequenced_mol="rRNA" /tissue_type="leaves" BASE COUNT 340 a 327 c 390 g 353 t 299 others ORIGIN BASE COUNT 340 a 327 c 390 g 353 t 4493 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(- ---)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~nnnnnnn nn-]------ 181 -----|---N NN|N-NNNN- NNNNN-NNNN NNNN-nnnn- nnn-nnnn-- ----nnnnnn 241 nnnn<----- ---------- ---------- ---------- ---------- ---nnnnagc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGAU- 1141 GG(--UAGAG G)CCU-ACUA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGCUGCUGCU AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ---uuau)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-Unn n-n(nnn-nn -nnnn|nn-n nn-nn)nnnn nn-|nnnnnn 1621 n-nnnnnn|n nnnnn--nnn nnnnn-nnn| nnn--nnnnn nnnnnnnnnn |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 nnnnnnnnnn nnngcagauc ggu-c----- --cgccccu- ggu----gug c--------- 1801 ---------- --a--ccggu ccgcu--cgu ---cccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uac cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g----cuccu gguc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccggugc u--------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------guu acuuug-aag a--aauuaga 2461 gugcucaa-a g--caagccu a--------- ---------- ---------- ---------- 2521 ----cgcucu ggauac-au- uagcauggga -------|ua -acauca-ua -ggau---uu 2581 c-gg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-uauu 2821 -gu-guuggc -cu-uc---- ------ggg- auc-ggagua a--ugauuaa ca--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---ga uuucag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUc-uuu gGGU|-U|C- CGGGGGGnnn nn--nn-nn( --nnnn-)nn 3721 nnn-nnnnnn -nnnn--nnn -nnn|nn-nn -nn-nnnnn- -nnnn-nnnn ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NGCCUGCG|C U--UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG Uc[cagacau 4081 agu--aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug ggu----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|-G-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GU UAACUAGCua u---cggagg ---------- -auc-cc--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------cu ccgcggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUG-G -C-C(----- 5041 --gcuua-)g gcca-C-GGA AGUU-UGAGG CAAnnn--nn nnn------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----nnn-nn n|nnnn|nn- 5221 n-nnn-nnnn nnnG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gaca-) ggccc----g gguaau-cuu u-gaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggcgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------cug ccgg-cga-- 5761 ---------- ---------- ---------n nn-nnn-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS E.lucida 5903 bp RNA RNA 01-JAN-1997 DEFINITION Eucryphia lucida.. ACCESSION No information KEYWORDS No information. SOURCE Eucryphia lucida. ORGANISM Eucryphia lucida. REFERENCE 1 (bases 1 to 1902) AUTHORS .W., Swensen,S.M., Zimmer,E.A., Chaw,S.-M., Gillespie,L.J. and Sytsma,K. J. Soltis,D.E., Soltis,P.S., Nickrent,D.L., Johnson,L.A., Hahn,W .J., Hoot,S.B., Sakamoto,J.A., Kuzoff,R.K., Kron,K.A., Chase,M TITLE Phylogenetic relationships among angiosperms inferred from 18S rDNA sequences JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U42533 LOCUS ELU42533 1735 bp DNA PLN 01-JAN-1997 DEFINITION Eucryphia lucida 18S ribosomal RNA gene, partial sequence. ACCESSION U42533 NID g1777667 KEYWORDS . SOURCE Eucryphia lucida. ORGANISM Eucryphia lucida Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; Magnoliopsida; Rosales; Eucryphiaceae; Eucryphia. REFERENCE 1 (bases 1 to 1735) AUTHORS Soltis,D.E., Soltis,P.S., Nickrent,D.L., Johnson,L.A., Hahn,W.J., Hoot,S.B., Sakamoto,J.A., Kuzoff,R.K., Kron,K.A., Chase,M.W., Swensen,S.M., Zimmer,E.A., Chaw,S.-M., Gillespie,L.J. and Sytsma,K. J. TITLE Phylogenetic relationships among angiosperms inferred from 18S rDNA sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1735) AUTHORS Soltis,D.E. TITLE Direct Submission JOURNAL Submitted (08-DEC-1995) Douglas E. Soltis, Botany, Washington State University, Pullman, WA 99164-4238, USA FEATURES Location/Qualifiers source 1..1735 /organism="Eucryphia lucida" /note="both strands sequenced using dye-deoxy terminators and an automated sequencer. n's should be interpreted as ambiguous rather than polymorphic" rRNA <1..>1735 /product="18S ribosomal RNA" BASE COUNT 424 a 394 c 476 g 435 t 6 others BASE COUNT 424 a 394 c 476 g 435 t 4174 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~U- A-GUCA-UAU --GCUUGUCU 61 CNNA|-GANU AA-NCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaucugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uuu)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggg uuggg-u-cg gccgg--u-c c-gc--cuca -ggu-gug-- ---------- 1801 ---------- --ca-ccggc c-g---gcuc -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugc cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu ggcc(uuaau 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccggcgc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GGAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -AU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUCCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---gc uuuaag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUc-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGcua u--gcggagg ---auacc-- cu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------c cgc-ggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --gcuua-)g scca-a-GGA AGUU-UGAGU CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-NCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gac--- aggccc---g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggcgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------ccg ccgg-cgac- 5761 guc----gcg -agaa-|guc -cacugaacc uu-auc-a-u uuag-AG~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS F.x.ananas 5903 bp RNA RNA 11-JAN-191 DEFINITION Fragaria x ananassa. subsp. was Fragaria ananassa.. ACCESSION No information KEYWORDS No information. SOURCE Fragaria x ananassa. subsp. was Fragaria ananassa. ORGANISM Fragaria x ananassa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X15590 -1 FA18Sstandard;DNA;PLN;1804BP. -1 -1 X15590; -1 DT 25-MAY-1990 (annotation) XX DE Strawberry (octoploid) DNA for 18S ribosomal rRNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Fragaria ananassa OC Eukaryota; Planta; Spermatophyta; Magnoliopsida; Rosidae; Rosales. XX RN [1] (bases 1-1804) RA Simovic N.; RT ; RL Submitted (19-JUN-1989) on tape to the EMBL Data Library by: RL Simovic N., Rutgers University Cook College, Dept of Horticulture & RL Forestry, P O Box 231 New Brunswick, NJ 08903 , U S A. XX RN [2] (bases 1-1804) RA Simovic N., Wolyn D., Jelenkovic G.; RT "Molecular cloning, restriction and sequence analysis of 18S rDNA RT in Fragaria x ananassa Duch - cultivated octoploid strawberry"; RL Unpublished. XX CC *source: library=lambda; strain=genotype 8343-6; clone=lambda FR1/ CC *source: rho FR1-11/rho FR1-5304. XX FH Key From To Description FH FT RRNA 1 1804 18S rRNA XX SQ Sequence 1804 BP; 451 A; 398 C; 491 G; 464 T; 0 other; BASE COUNT 451 a 398 c 491 g 464 t 4099 others ORIGIN 1 |~~~~~~~~~ ~~~~~UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaucuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uuu)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggg uuggg-u-cg accgg--u-c c-gc--cuua uggu-gug-- ---------- 1801 ---------- --ca-ccggu c-g---gcuc -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uac cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ac g----cuccu ggcc(uuaac 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uccggugc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GGAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -CU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-cg gcg-g-a-ug uu--(---ac uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-ccg-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGC-|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG*GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGcua u--cgggagg ---------u cu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------c cucgggcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----AG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-c(----- 5041 --gcuua-)g -cga-a-CCA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UC A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gacc-) acg------g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaguu gu-ucgga-u cgc-ggcg-a cgg-ggggcc gg-------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------cug cccg-cgac- 5761 guc----gcg -agaa-|guu ccacugaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS S.arenaria 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16606 ID SA18SRRN standard; RNA; PLN; 1762 BP. XX AC X16606; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Schoepfia arenaria 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Schoepfia arenaria OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Santalales; Olacaceae. XX RN [1] RP 1-1762 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1762 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1762 BP; 419 A; 364 C; 454 G; 453 T; 72 other; BASE COUNT 419 a 364 c 454 g 453 t 4213 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnCyU sGU(UGA)UC CU|GCCAGU- A-GUCA-UAy --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cggu- uau-aguu-- ----uguugg 241 augg<----- ---------- ---------- ---------- ---------- ---uacuuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAKUG G)CCU-ACYA U-|GGUGU-U GNC|GGGU-G A-CNGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GANANN G-AGCC(U-G AGAANC)GGC nnCC-ACCCU (CCAA-)nnn 1261 -GGCAGC-A- ---------| GGC-GC-GC- NNAUU-ACCC -AAUCCU-G( ---aca--)C 1321 SGGG-A-GGU -|A|NUNACA AUNA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ---uuuu)GA GU-CU-GGUN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGNU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCn-GC -AGCC|GC-G Gn-nA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U NUUUA--AGU UGNNG-CAG| UUN--NAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu-ggg uuggg-u-cg aucgg--u-c c-gc--ccuu gggu-gug-- ---------- 1801 ---------- --aa-ccggu c-g---gcnn -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugc cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----uuccu ggcc(uugau 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---------- --uccggugc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GAAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -CU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA NA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGNA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAANGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CK-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuauag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|N- NNNNNNNAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 ANNNUGCG|G CU-UAAUUNG (ACUNNA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UN-GU- GGU-G-CAUG |GCC|GN-NC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCua c--auggag- --------gu nna------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cuc caug-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-- -c-c(----- 5041 --uuuua-)g gcca-C-GGA AGUU-UGAGG CAAUAA--CA NGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 n-AGA-UGUU CUGG-GC-GC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gaca-) gguca----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACNNNG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACUGCCNNU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggcgg ---------- ---------- 5701 -------(uu g-----)--- ---------- ---------- -------cug ccgg-cgac- 5761 guc----acg -agaa-|guc -cacugaacc uu-auc-a-u uung-AGGAN NG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS B.disticho 5903 bp RNA RNA 11-JAN-191 DEFINITION Buckleya distichophylla. ACCESSION No information KEYWORDS No information. SOURCE Buckleya distichophylla. ORGANISM Buckleya distichophylla. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16598 ID BD18SRRN standard; RNA; PLN; 1767 BP. XX AC X16598; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Buckleya distichophylla 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Buckleya distichophylla OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Santalales; Santalaceae. XX RN [1] RP 1-1767 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1767 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1767 BP; 430 A; 365 C; 463 G; 455 T; 54 other; ID BD18SRRN standard; RNA; PLN; 1767 BP. XX AC X16598; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Buckleya distichophylla 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Buckleya distichophylla OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Santalales; Santalaceae. XX RN [1] RP 1-1767 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1767 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1767 BP; 430 A; 365 C; 463 G; 455 T; 54 other; BASE COUNT 430 a 365 c 463 g 455 t 4190 others ORIGIN 1 |~~~~~~~~~ ~~~~~nACCU GGU(UGA)UC CU|GCCAGn- A-GUCA-UAn --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacaa-auu ---------- -caaacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguung 241 augg<----- ---------- ---------- ---------- ---------- ---uaucuac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACUA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-YGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- NAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ---uuuu)GA GU-CU-GGUN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gn-nA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U NUUUA--AGU UGUNG-CAG| UUN--NAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg uuggg-uucg aucgg--u-c g-gc--uucu gggc-gug-- ---------- 1801 ---------- --ua-ccggu u-g---auug -aacccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uac cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu g-cc(uuagc 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---------- --uucggugc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGA 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---ACGCUCU GGAUAC-AU- UAGCAUGGGA -------|UA -ACAUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -CU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CK-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-wg uu--(---gc uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|N- NNNNNNNAGU AU--GG-UC( --GCAA-)GG 3721 CUN-AAACUU -AAAG--GAA -UUG|AC-GG -AN-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 NGCCUGCG|G CU-UAAUUUG (ACUN-A-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uaku-aagga nngacaga(u ugagagc)-- --ucuuucau gauu-cunnn gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GN- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCn 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCua c--auggngg ---------u uuc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ccuu caug-gcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Au--n -c-u(----- 5041 --acnua-)g gcca-C-GGA ANNN-NGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 n-AGA-UGUU CUGG-GC-GC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcu(gaca-) agcca----g ggunau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGANG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggcnn ---------- ---------- 5701 -------(nn cg----)--- ---------- ---------- -------cug cugg-cgau- 5761 guc----gug -agaa-|guc -cacugaacc uu-auc-a-u uuag-AGGAN NG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS A.verticil 5903 bp RNA RNA 11-JAN-191 DEFINITION Arceuthobium verticilliflorum. ACCESSION No information KEYWORDS No information. SOURCE Arceuthobium verticilliflorum. ORGANISM Arceuthobium verticilliflorum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24042 LOCUS AUHRG18S 1808 bp ds-DNA PLN 10-SEP-1993 DEFINITION Arceuthobium verticilliflorum 18S ribosomal RNA (18S rRNA) gene, complete. ACCESSION L24042 KEYWORDS 18S ribosomal RNA. SOURCE Arceuthobium verticilliflorum DNA. ORGANISM Arceuthobium verticilliflorum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Santalales; Viscaceae. REFERENCE 1 (bases 1 to 1808) AUTHORS Nickrent,D.D. TITLE High rates of of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1808 /product="18S ribosomal RNA" /gene="18S rRNA" /note="ds PCR product" source 1..1808 /organism="Arceuthobium verticilliflorum" /sequenced_mol="DNA" BASE COUNT 458 a 337 c 481 g 518 t 14 others ORIGIN BASE COUNT 458 a 337 c 481 g 518 t 4109 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -aagauggug au-]------ 181 -----|---A CU|G-UGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uuuuuuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|guuucu gc|--CCU-A UNA--ACUUU C-GAUGGUA- 1141 AG(-AUAUUG G)CCU-ACUA U-|GGUGU-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aug--)C 1321 GGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uaac)GA GU-UU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-UGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCG-A|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuugggu uggguuugau cggucuaccu uugggugugu accgguu--- ---------- 1801 ---------- --------ac cu-----cgu ---cccucc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uac ccau---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuucu ggcc(uuaau 2161 u----)ggu- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --uugggugc u--------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------guu acuuug-aag a--aauuagu 2461 gugcucaa-a g--caaguuu g--------- ---------- ---------- ---------- 2521 ----ugcucu ggauac-au- uagcauggga -------|ua -acguca-ua -ggau---uu 2581 u-ga------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-uauu 2821 -ug-guuggc -cu-uc---- ------ggg- auc-ggagua a--ugauuaa ua--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGUGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---ac uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uug-g ua-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUu-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG Uc[cagacau 4081 agu--aagga uugacaga(u ugagagc)-- --ucuuucgu uauu-cuaug ggu----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|-G-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCua u--guggagg uacaccuu-- caug-g---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --guag---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUG-- -C-C(----- 5041 --aacua-)g gcca-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug acu(auua-) ggucu----g gguaau-cuu u-gaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUU-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u uau-ggcg-a cgu-nnnngc ---------- ---------- 5701 -------(uu ug----)--- ---------- ---------- -------cug ucgg-cgau- 5761 guu----gug -agaa-|guu -cauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS D.domingen 5903 bp RNA RNA 11-JAN-191 DEFINITION Dendrophthora domingensis. ACCESSION No information KEYWORDS No information. SOURCE Dendrophthora domingensis. ORGANISM Dendrophthora domingensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16601 ID DD18SRRN standard; RNA; PLN; 1767 BP. XX AC X16601; XX DT 10-APR-1991 (Rel. 28, Last updated, Version 3) DT 19-MAR-1991 (Rel. 27, Created) XX DE Dendrophthora domingensis 18S ribosomal RNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Dendrophthora domingensis OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Santalales; Loranthaceae. XX RN [1] RP 1-1767 RA Nickrent L.; RT ; RL Submitted (21-SEP-1989) on tape to the EMBL Data Library by: RL Nickrent D. L., University of Illinois, Department of Plant RL Biology, 505 S. Goodwin Ave., Urbana, IL 61801, USA. XX RN [3] RP 1-1767 RA Nickrent D.L., Franchina C.R.; RT "Phylogenetic relationships of the Santalales and relatives"; RL J. Mol. Evol. 31:294-301(1990). XX SQ Sequence 1767 BP; 426 A; 357 C; 472 G; 469 T; 43 other; BASE COUNT 426 a 357 c 472 g 469 t 4179 others ORIGIN 1 |~~~~~~~~~ ~~~~~nACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagauggug au-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguunn 241 augg<----- ---------- ---------- ---------- ---------- ---uaccunc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- YACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-AUAGUU G)CCU-ACUA U-|GGUGU-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GANAGG G-AGCC(U-G AGAAAC)GGC UnCC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- NNAUU-ACCC -AAUCCU-G( ---acn--)C 1321 GGGG-A-GGU -|N|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uaac)GA GU-CU-GGUN A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-UGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-NA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U NUUUA--AGU UNNNG-CAG| UUN--NAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaguuu-ggg uuggg-uuug aucgg--u-c c-gc--cacu cggu-gug-- ---------- 1801 ---------- --ua-ucggu u-g---ccn- -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uac cggu---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu g-cc(uuaaa 2161 u----)ggc- ---------- ---------- -cnggn---c gugc------ ---------- 2221 ---------- --uucggugc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGU 2461 GUGCUCAA-A G--CAAGCCU ---------- ---------- ---------- ---------- 2521 ---GCGCUCU GGAUAC-AU- UNGCAUGGGA -------|UA -ACGUCA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-NAUU 2821 -UU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuacag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUN-nuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --NNAA-)GG 3721 CUN-AAACUU -NAAG--GAA -UNG|AC-GG -AA-GGGCN- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUAAC-A- )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(c ugagagc)-- --ucuuucau gauu-cunug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GU UAACUAGCua c--auggagg ---------u gcc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ccuu cauggcuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Aug-- -c-c(----- 5041 --aacua-)g gcca-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CwG-wG A|UGCC|CU- 5221 n-AGA-UGUU CUGG-GC-GC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa ugaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug guc(guca-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACNGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u ugc-gaca-- ugu-gggcgu ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------ucg ucgg-cgau- 5761 guc----gug -agaa-|guu -cauugaacc uu-auc-a-u uuag-AGGAN NG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS P.serotinu 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X16607 X16607 Phoradendron serotinum 18S ribosomal RNA Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Santalales; Loranthaceae. BASE COUNT 423 a 356 c 472 g 477 t 4175 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnCCU GGU(UGA)UC Cn|GCCAGn- A-GUCA-nnn --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacuaaauu ---------- -cagauggug au-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uguunn 241 augg<----- ---------- ---------- ---------- ---------- ---uaccuuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-AUAGUG G)CCU-ACUA U-|GGUGU-U GAC|GGGU-S A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAKG G-AGCC(U-G AGAAAC)GGC UnCC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- NNAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|N|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUU(---- ---uaac)GA GU-CU-GGUH A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC C-----UU-A A-UGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U NUUUA--AGU UGUNG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg uuggg-uucg aucgg--u-c c-gcc--acu cggu-gug-- ---------- 1801 ---------- --ua-ccggu u-g---cccn -gucccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------ugc cggu---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu g-cc(uuaac 2161 u----)ggc- ---------- ---------- -cgggu---c guuc------ ---------- 2221 ---------- --uccggugc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UGUU ACUUUG-AAG A--AAUUAGU 2461 GUGCUUAA-A G--CA-GCKU ---------- ---------- ---------- ---------- 2521 ---GCGCUCU GGAUAC-AU- UNGCAUGGGA -------|UN -ACGUUA-UA -GGA----uu 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uCC|-UAUU 2821 -UU-GUUGGC -CU-UC---- ------GGG- AUC-GGAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGC ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAANGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---gc uuauag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ug-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUY-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUN-AAACUU -AAAG--GAA -UNG|UC-GG -AA-GGGCN- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUNAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga ungacaga(c ugagagc)-- --ucuuucau gauu-cunun gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UNG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GU UAACUAGCua c--auggagg ---------u ucc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ccuu cauggcuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aG-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------NCUU AGAGG]---- --|------- ---------- GACU-Aug-g -c-u(----- 5041 --gacua-)g gcca-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|Cn- 5221 n-AGA-UGUU CUGG-GC-GC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa ugaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-u- gcc(guua-) ggccc----g gguaau-cuu -ugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAY-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCAU-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u ugc-gaca-- ugu-gggcgu ---------- ---------- 5701 -------(uu ug----)--- ---------- ---------- -------ucg uucg-ugau- 5761 guc----aug -ggaa-|guu -cauugaacc uu-auc-a-u uuag-AGGAN NG-AGNA-G- 5821 UCGNNNNNNN NN-------- -----N-N-N NNNNNN(NNN N)NNNNNNNN NNNNNNN--- 5881 --NNN----- -------~|| ||| // LOCUS C.iowense 5903 bp RNA RNA 11-JAN-191 DEFINITION Chrysosplenium iowense. ACCESSION No information KEYWORDS No information. SOURCE Chrysosplenium iowense. ORGANISM Chrysosplenium iowense. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L28136 LOCUS CSLRGEA 1776 bp ds-DNA PLN 22-AUG-1994 DEFINITION Chrysosplenium iowense Rydb. 18S ribosomal RNA gene. ACCESSION L28136 KEYWORDS 18S ribosomal RNA; PCR. SOURCE Chrysosplenium iowense Rydb. DNA. ORGANISM Chrysosplenium iowense Rydb. Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Rosales; Saxifragaceae. REFERENCE 1 (bases 1 to 1776) AUTHORS Nickrent,D.L., Soltis,D.E. and Kuzoff,R. TITLE A comparision of angiosperm phylogenies from nuclear 18S rRNA and rbcL sequences JOURNAL Unpublished (1994) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Nickrent,D.L. TITLE Molecular phylogenies of angiosperms JOURNAL Ann. Missouri Bot. Garden (1994) In press STANDARD full automatic COMMENT NCBI gi: 531915 FEATURES Location/Qualifiers source 1..1776 /organism="Chrysosplenium iowense Rydb." /sequenced_mol="DNA" rRNA 1..>1744 /gene="18S rRNA" /note="ds PCR product; complete 18S sequence except for ca.32 bases at 3' end" /product="18S ribosomal RNA" BASE COUNT 444 a 379 c 476 g 455 t 22 others ORIGIN BASE COUNT 444 a 379 c 476 g 455 t 4149 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacua-auu ---------- -cagacugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ---uaccugc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCUC(---- ----uau)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaccuu---- ---------g ggu------- -------u-- gggau--gac cgguccgcuc 1801 ugggu---gu gcau--cgau uaucu--cgu ---cccuuc- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------uac cggc---gau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc g----cuccu gguc(uuaac 2161 u----)ggc- ---------- ---------- -cgggu---c gugc------ ---------- 2221 ---c------ --accggugc u--------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------guu acuuug-aag a--aauuaga 2461 gugcucaa-a g--caagccu a--------- ---------- ---------- ---------- 2521 ----cgcucu guauac-au- uagcauggga -------|ua -acauca-ua -ggau---uu 2581 c-ug------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucc|-uauu 2821 -cu-guuggc -cu-uc---- ------ggg- auc-ggagua a--ugauuaa ca--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gggau-ca gcg-g-a-ug uu--(---ac uuuuag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUu-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG Uc[cagacau 4081 agu--aagga uugacaga(c ugagagc)-- --ucuuucuu gauu-cuaug ggu----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|-G-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCua u--guggagg uga------c c--------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------cu ccacagcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUG-G -C-G(----- 5041 -auuuaa-)g gcca-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auagccu-ug gcc(gaca-) ggccc----g gguaau-cuu u-gaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGGUCUUA-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-ACAUCAG- )CUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-ucgga-u cgc-ggcg-a cgu-gggcgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -------cug ccgg-cgac- 5761 guc----gug -agaa-|guc -cauugaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS B.fungosa 5903 bp RNA RNA 11-JAN-191 DEFINITION Balanophora fungosa. ACCESSION No information KEYWORDS No information. SOURCE Balanophora fungosa. ORGANISM Balanophora fungosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L24044 LOCUS BAFRG18S 1787 bp ds-DNA PLN 10-SEP-1993 DEFINITION Balanophora fungosa 18S ribosomal RNA (18S rRNA) gene, 5' end. ACCESSION L24044 KEYWORDS 18S ribosomal RNA. SOURCE Balanophora fungosa DNA. ORGANISM Balanophora fungosa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Santalales; Balanophoraceae. REFERENCE 1 (bases 1 to 1787) AUTHORS Nickrent,D.D. TITLE High rates of of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..>1787 /product="18S ribosomal RNA" /gene="18S rRNA" /note="complete 18S sequence except for ca.50 bases at 3' end; ds PCR product" source 1..1787 /organism="Balanophora fungosa" /sequenced_mol="DNA" BASE COUNT 480 a 289 c 447 g 566 t 5 others ORIGIN BASE COUNT 480 a 289 c 447 g 566 t 4121 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaauuu-guu ---------- -cagauugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uguuug 241 augg<----- ---------- ---------- ---------- ---------- ----uuuuuc 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UAUGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -auauuuuuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-AUAUGG G)CUU-ACCA U-|GGUUU-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)AGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUNCUUG( ---aca--)U 1321 GUGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACUGG- -GCUC(---- ----uuu)GA GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUA -UAAA--UUC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U GUUUA--AGU UGUUG-CAG| UUG--AAAAG CUCGUAGUUU |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauucuggau uugguuuauc gguccgccuu uucgggugug uau--c-guu auauuggguc 1801 cgu------- -----c---- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------cga uguc---cau 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gu a----cuccu gucc(uugau 2161 u----)ggu- ---------- ---------- -ugggu---c augu------ ---------- 2221 ---c------ --uuugaugu u--------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------guu acuuug-aag a--aauuaga 2461 gugcuuaa-a g--caagcuu g--------- ---------- ---------- ---------- 2521 ----ggcuuu gaauau-ac- uagcauggga -------|ua -auauau-aa -ggau---uu 2581 c-aa------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-uauu 2821 -uu-auuggc -cu-uu---- ------ugg- guu-gaagua a--ugauuaa aa--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --CGGGGGCA UU|--CAUAU UUUAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUGA-AAG- A-UGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU CA--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gggau-ca gua-g-a-ug uu--(---ac uuauag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-ua-cug-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUa-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG Uc[cggacau 4081 agu--aagga uugacaga(u ugauagc)-- --uuuuucaa aauu-uuaug ggu----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|-G-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-AU UAACUAGCua ---------- ---------- caug------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --guagu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------cuu uuuccaugga uugcu----- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG]---- --|------- ---------- GACU-GUG-G -C-U(----- 5041 --aauua-)g gcca-A-GGA AGUU-UUAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU UUGG-GCCGC A-CGCGUGCU ACACU--G-A UGUAU----- ---------- 5281 ---(------ ----)[ucaa caaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-ug guc(gaua-) gauuu----g gguaau-cuu g-gaa-]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGGUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CAU-GAG (-UCAUUAA- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-u gu-augga-u uau-gacg-a uau-uggugu ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- -------aua cuaa-ugau- 5761 guu----uua -agaa-|auc -cauugaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAG~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (3)-strame 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS (4)-Bacill 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS B.paxillif 5903 bp RNA RNA 11-JAN-191 DEFINITION Bacillaria paxillifer. ACCESSION No information KEYWORDS No information. SOURCE Bacillaria paxillifer. ORGANISM Bacillaria paxillifer. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87325 LOCUS BLLRRNAA 1790 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Bacillaria paxillifer 16S-like ribosomal RNA, complete. ACCESSION M87325 KEYWORDS 16S-like ribosomal RNA; Protist; small subunit ribosomal RNA. SOURCE Bacillaria paxillifer (sub_species Mull Hend.) rRNA. ORGANISM Bacillaria paxillifer Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1790) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1790 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 467 a 345 c 473 g 505 t ORIGIN BASE COUNT 467 a 345 c 473 g 505 t 4113 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaucu---u ---------- -uu-acuuug aa-]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU -GGAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---uugu)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuug-ugg ---cu-gucg cgugc--g-g c-gugacacu uuuguguu-- ---------- 1801 ---------- --au-cgcuu g-c---uu-- --gcgucgcc a-uc------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -------cuu gggu----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c-c-u-gugu ggca(-uuag 2161 gu----)ug- ---------- ---------- -ucgugcag- ggga------ ---------- 2221 ---u------ ---gcccauc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UGCCGU-UGA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uac|-UAUU 2821 -UU-GUUGGU -UU-Gc---- ------gca- ccg--AGGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --gggau-ug gcg-g-a-gu cu--(---cg uuuug----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------uc-u c-cg-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCAC -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGcuu a--ccgagug a--------a ugu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uca cuggguga-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-Ugc-a -u-u(----- 5041 --cuauua)G AUGC-A-GGA AGAU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-ug gcu(gaga-) agccu----g ggcaau-cuu uugaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaag-- ccu-cggga- uugu-ggcg- aguu-ccc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --gg-gag-- 5761 uuuguc-gcg -agaa-|cuu -gucuaaacc uu-auc-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS C.closte.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Cylindrotheca closteriva. ACCESSION No information KEYWORDS No information. SOURCE Cylindrotheca closteriva. ORGANISM Cylindrotheca closteriva. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87326 LOCUS Cylclost 1870 BP DEFINITION Cylindrotheca closterium Battacharya et al. 1992 m87326 ORIGIN BASE COUNT 470 a 346 c 467 g 504 t 4116 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU AAAU-A-UCU ------u--- ---ac-UUU- GAA]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAG<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---UUGU)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUGuggu g-Uacu--uc g-gcggcc-c -gucac---U AUgug--aug gAgcuUgcu- 1801 g--------- aa-gucg-cc aUCCUugggu gg-aucc--u guguggcaUU AAGUuguc-g 1861 ugcag--ggg a-ug-ccca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUAGGA-UA -GGACcUUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----cA CCA-AG-gUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UgGGGGUA UU|--CGUAU UUCAuUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCau -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --GGGAU-UG GUG-G-a-gU uU------CG UUAUgUc--- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-ca-uCA-G CA-CCUU--- ---------- ----AUGA(- 3661 GAAA-)UCaC -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAGGuu GCCU------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aguga -AU-Uucacu ggg--uGa-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----au---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACg-UGC-A -U-U(----- 5041 --cuauua)G AUGC-A-GGA AGAU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CGAG--U--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 CUA-CCU-UG GCC(GAGA-) GGCcU----- GGGCAAUCUU UUGAAC]--- ---------- 5461 -------CUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAa- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GAAG-- CCU-CGGGA- uugu-ggc-g aguu-ccc-- ---------- ---------- 5701 -------(UU CA--UU)--- ---------- ---------- ---------- --gg-gag-- 5761 uuuguc-gcg -agaa-|cUU -gUcuAAACC UU-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS C.closte.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Cylindrotheca closteriva. ACCESSION No information KEYWORDS No information. SOURCE Cylindrotheca closteriva. ORGANISM Cylindrotheca closteriva. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87326 LOCUS CYLRRNAA 1788 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Cylindrotheca closteriva 16S-like ribosomal RNA, complete. ACCESSION M87326 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Cylindrotheca closterium (sub_species Reim and Lewin) rRNA. ORGANISM Cylindrotheca closterium Eukaryota; Fungi; Chromophycota; Bacillariophyceae; Pennales; Araphidineae; Diatomaceae. REFERENCE 1 (bases 1 to 1788) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 28..1761 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 470 a 346 c 468 g 504 t ORIGIN BASE COUNT 470 a 346 c 468 g 504 t 4115 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaauauc--- ---------- --uua-cuuu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---uugu)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuug-ugg -----u-gua cuucgg--c- gg-cccguca cuaugu-gau ---------- 1801 ---------- ------g-g- agcuug-c-- --ugaagucg ccauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cuugggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggauc-c- u-guguggca 2161 (uuaagu--- ---------- ---------- ---)ugucgu gcag------ ---------- 2221 ----ggg--- ------augc ccauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCu----- ---------- ---------- ---------- 2521 -------uau -GCCGU-UGA AUAUAU-UAG CAUGGAA|UA -AUAGGA-UA -GGACcUUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-Gc---- ---g----ca CCA-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --gggau-ug gug-g-a-gu uu--(---cg uuaug----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------uc-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- caAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGguu g--ccuagug a--------a uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ucacuggg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugaau- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UGC-A -U-U(----- 5041 --cuauua)G AUGC-A-GGA AGAU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uaccu-ug gcc(gaga-) ggcu-----g ggcaau-cuu uugaac]--- ---------- 5461 -------CUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- ccu-cggga- uugu-ggcg- aguu-ccc-- ---------- ---------- 5701 -------(uu ca--uu)--- ---------- ---------- ---------- --gg-gag-- 5761 uuuguc-gcg -agaa-|cuu -gucuaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS N.apiculat 5903 bp RNA RNA 11-JAN-191 DEFINITION Nitzschia apiculata. ACCESSION No information KEYWORDS No information. SOURCE Nitzschia apiculata. ORGANISM Nitzschia apiculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87334 LOCUS NIZRRNAA 1789 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Nitzchi apiculata 16S-like ribosomal RNA, complete. ACCESSION M87334 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Nitzschia apiculata (sub_species Greg) rRNA. ORGANISM Nitzschia apiculata Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1789) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1762 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 469 a 346 c 468 g 506 t ORIGIN BASE COUNT 469 a 346 c 468 g 506 t 4114 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaauauc--- ---------- --uua-cuuu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACUUGGaA UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---uugu)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuug-ugg ----uu-guc gcucgc--g- gc-cugguac uu-agu-gcc ---------- 1801 ---------- ------g-g- ugcuug-c-- -a-------- -gcggc-gcc au-------- 1861 c--------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cuugggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggaac--c u-guguggca 2161 (uuaggu--- ---------- ---------- ---)ugucgu gcag------ ---------- 2221 ----gggau- ---------g cccauc---- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCuua--- ---------- ---------- ---------- 2521 --------u- -gCCGU-UGA AUAUGU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----ca CCA-AG-GUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGUGGGUA UU|--CGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --gggau-ug gcg-g-a-gu uu--(---ca uuuug----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------uc-u c-cg-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- cAAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGcuu g--cauagug a--------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ucacugug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugaag- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UGC-A -U-U(----- 5041 --cuauua)G AUGC-A-GGA AGAU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---------- -----[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uaccu-ug gcc(gaga-) ggccu----g ggcaau-cuu uugaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- ccu-cggga- uugu-ggcg- aguu-ccc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --gg-aag-- 5761 uuuguc-gcg -agaa-|cuu -gucuaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS Pn.multise 5903 bp RNA RNA 11-JAN-191 DEFINITION Pseudo-nitzschia multiseries subsp. was Nitzschia pungens f. multiseries. ACCESSION No information KEYWORDS No information. SOURCE Pseudo-nitzschia multiseries subsp. was Nitzschia pungens f. multiseries. ORGANISM Pseudo-nitzschia multiseries. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U18241 LOCUS NPU18241 2044 bp DNA PLN 02-FEB-1995 DEFINITION Nitzschia pungens f. multiseries small subunit rRNA and 5.8S rRNA genes, partial sequence. ACCESSION U18241 KEYWORDS . SOURCE Nitzschia pungens f. multiseries. ORGANISM Nitzschia pungens f. multiseries Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia. REFERENCE 1 (bases 1 to 2044) AUTHORS Manhart,J.R., Fryxell,G.A., Villac,C.M. and Segura,L.Y. TITLE Pseudo-nitzschia pungens and P. multiseries (Bacillariophyceae): nuclear rDNAs and species boundaries JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2044) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (07-DEC-1994) James R. Manhart, Biology, Texas A&M University, Department of Biology, College Station, TX 77843-3258, USA STANDARD full automatic COMMENT NCBI gi: 642528 FEATURES Location/Qualifiers source 1..2044 /organism="Nitzschia pungens f. multiseries" /isolate="tka2" rRNA <1..1773 /product="small subunit ribosomal RNA" misc_RNA 1774..2000 /note="ITS1" /product="internal transcribed spacer" rRNA 2001..>2044 /product="5.8S rRNA" BASE COUNT 539 a 398 c 516 g 591 t ORIGIN BASE COUNT 465 a 334 c 460 g 517 t 4127 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~CAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaauauu--- ---------- --uua-cuuu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---ucuu)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuguggu g-uguccagu cggccuuugc ucuuugagug auugcg-cug uacuggucug 1801 cc-au---gu uu-gggu-gg aaucugugug gcauuaaguu gucgugcagg ggaugcccau 1861 c--------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCu----- ---------- ---------- ---------- 2521 -------uau -gccgu-uGA AUAUAU-UAG CAUGGAA|UA -AUGAUA-UA -GGACcUUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-uauu 2821 -uu-guuggu -uu-gc---- ---g----ca CUA-AG-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--UGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGG-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --gggau-ug gug-g-a-gu uu----cguu uc-------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----guc-u c-ca-uca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- uAAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUagcac gcauaguguu uaucacugug ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------gug- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UGC-G -U-U(----- 5041 --cuauua)G ACGC-A-GGA AGAU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uaccu-ug gcc(gaga-) ggccu----g ggcaau-cuu uugaac]--- ---------- 5461 -------UUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- ccu-cggga- uugu-gauu- aguu-ucc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --gg-aag-- 5761 uuuguc-acg -agaa-|cuu -gucuaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uua----- -------~|| ||| // LOCUS Pn.pungens 5903 bp RNA RNA 11-JAN-191 DEFINITION Pseudo-nitzschia pungens subsp. was Nitzschia pungens f. pungens. ACCESSION No information KEYWORDS No information. SOURCE Pseudo-nitzschia pungens subsp. was Nitzschia pungens f. pungens. ORGANISM Pseudo-nitzschia pungens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U18240 LOCUS NPU18240 2075 bp DNA PLN 02-FEB-1995 DEFINITION Nitzschia pungens f. pungens small subunit rRNA and 5.8S rRNA genes, partial sequence. ACCESSION U18240 KEYWORDS . SOURCE Nitzschia pungens f. pungens. ORGANISM Nitzschia pungens f. pungens Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia. REFERENCE 1 (bases 1 to 2075) AUTHORS Manhart,J.R., Fryxell,G.A., Vilac,C.M. and Segura,L.Y. TITLE Pseudo-nitzschia pungens and P. multiseries (Bacillariophyceae): nuclear rDNAs and species boundaries JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2075) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (07-DEC-1994) James R. Manhart, Biology, Texas A&M University, Department of Biology, College Station, TX 77843-3258, USA STANDARD full automatic COMMENT NCBI gi: 642527 FEATURES Location/Qualifiers source 1..2075 /organism="Nitzschia pungens f. pungens" /isolate="F310" rRNA <1..1772 /product="small subunit ribosomal RNA" misc_RNA 1773..2031 /note="ITS1" /product="internal transcribed spacer 1" rRNA 2032..>2075 /product="5.8S rRNA" BASE COUNT 549 a 412 c 518 g 596 t ORIGIN BASE COUNT 464 a 338 c 459 g 514 t 4128 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~CAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaauauu--- ---------- --uua-cuuu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---ucuu)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuguggu g-uguccagu cggccuuugc ucuuugagug auugcg-cug uacuggucug 1801 cc-au---gu uu-gggu-gg aaucugugug gcauuaaguu gucguacuga gggugcccau 1861 c--------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCu----- ---------- ---------- ---------- 2521 -------uau -gccgu-uGA AUAUAU-UAG CAUGGAA|UA -AUGAUA-UA -GGACcUUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-uauu 2821 -uu-guuggu -uu-gc---- ---g----ca CUA-AG-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--UGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGG-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --gggau-ug gcg-g-a-gu cu----cguu uc-------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----guc-u c-cg-uca-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- uAAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUagcaa acauaguguu uaucacugug ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------uug- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UGC-G -U-U(----- 5041 --cuauua)G ACGC-A-GGA AGAU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uaccu-ug gcc(gaga-) ggccu----g ggcaau-cuu uugaac]--- ---------- 5461 -------CUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- ccu-cggga- uugu-gauu- aguu-ucc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --gg-aag-- 5761 uuuguc-acg -agaa-|cuu -gucuaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uua----- -------~|| ||| // LOCUS C.radiatus 5903 bp RNA RNA 11-JAN-191 DEFINITION Coscinodiscus radiatus. ACCESSION No information KEYWORDS No information. SOURCE Coscinodiscus radiatus. ORGANISM Coscinodiscus radiatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77705 LOCUS CR18SRR 1811 bp DNA PLN 22-FEB-1994 DEFINITION C.radiatus (CCMP 309) 18S rRNA gene. ACCESSION X77705 KEYWORDS 18S ribosomal RNA. SOURCE Coscinodiscus radiatus ORGANISM Coscinodiscus radiatus Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1811) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1811) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456329 FEATURES Location/Qualifiers source 1..1811 /organism="Coscinodiscus radiatus" /strain="CCMP 309" rRNA 1..1811 /product="18S ribosomal RNA" BASE COUNT 503 a 330 c 453 g 523 t 2 others ORIGIN BASE COUNT 503 a 330 c 453 g 523 t 4094 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------cu aauugga--- ---------a uugac-uauu gaa]------ 181 -----|---A CU|G-UGAA- CUGCU-CAAU AAAU-cggu- uau-aauu-- ----uacuug 241 auga<----- ---------- ---------- ---------- ---------- --uuuuuugc 301 u>ACUUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -acaucaucc -aa|guuucc gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-G A-CGGA|UGG -U-(UAGG-) 1201 GCU-GGACC- CCG|GAGAGs G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAC-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGU- -GCCC(---- ---ucau)GG GU-AU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CAA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G -U-AA)UUCC AG-|CUCCAA 1621 U-AGCAUA|U AUUAA--AGU UGUUG-UAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuggu g-ggagcaau cagugugacc uuaugguuuc aacuug-uau ugucucuggc 1801 ca-uc---uu ug-ggga-ga gucugucugg cauuagguug ucgggcagug gaucu----- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- --ccau--c- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AAUAGAGUGU UC-AA-AG-C AGGCuuau-- ---------- ---------- ---------- 2521 ---------- -gccaa-uGA AUAUAU-UAG CAUGGAA|UA -AUCAGA-UA -GGACcCUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c--uauu 2821 -ug-guuggu -uu-gu---- ---g----ug CCA-uG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGuGGGUA UU|--UGUAU UGCGAUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCCGC-AAG- A-CAGACA-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gca-g-g-ag uu----aaua ug-a------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-ug-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-uagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|AG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUaguua cau--gaa-- ---------- --ug--auu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------u-u ucauucau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gagau- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACu-UUU-G -G-U(----- 5041 ---gacua)A CCAA-A-GGA AGUU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGUGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa caagcau--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auaaccu-ug guc(gaau-) ggccu----g ggc-aaucuu guaaac]--- ---------- 5461 -------GUG CAU-C-A--- UGAU-A-GGG AUAGAUUAU( UGAAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGC-AGA (-UCAUCAA- )UCUGU-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- acu-cggga- ccgu-guuu- ggau-guc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --ga-ugu-- 5761 cugauu-aug -ggaa-|cuu -gucugaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS S.broschii 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87330 LOCUS SYXRRNAA 1805 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Stephanopyxis cf. broschii 16S-like ribosomal RNA, complete. ACCESSION M87330 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Stephanopyxis broschii (sub_species Grun) rRNA. ORGANISM Stephanopyxis broschii Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1805) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1778 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 480 a 351 c 474 g 500 t ORIGIN BASE COUNT 480 a 351 c 474 g 500 t 4098 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUGA-UAC --GCUCGCAU 61 UUAA|-GAUU AA-GCCAUGC A-UGUGU-CA GU|------- |--------- ----[----- 121 ---------- --------uu aaaaau---- ---------- ---uu-auuu gag]------ 181 -----|---A CU|G-UGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- -uucccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauau -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCAU-U AAC|GGGU-A A-CGGG|AGA -U-(CAGG-) 1201 GUU-UGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACG AUUA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---uuuc)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACGAUG -UAAA--CAC C-----CU-A U-CGA-GGAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuuc-ugg --cggg-agc aaccgg--u- cc-uucacuu gguguu-ggu ---------- 1801 ---------- ------a-c- uugugu-u-- -gu-cucugg ccauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cuugggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --agagc-c- u-guguggca 2161 (uuaagu--- ---------- ---------- ---)ugucgg gcgg------ ---------- 2221 ----ggg--- ------aucc ccauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAGA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCu----- ---------- ---------- ---------- 2521 -------uau -GCCGC-UGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUUGG 2581 ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-Gc---- ---g----ca UCA-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU CA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gggau-ua gcg-g-u-cg uu--(----u auuagu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uua-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|--G 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGucc u--gugaaug a--------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ucauugac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aaggu- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUC-G -G-U(----- 5041 --gacua-)A CCGA-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCGGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa caagcau--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auaaccu-ug gcc(gaga-) ggccu----g gguaau-cuu ugaaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGUUcc- 5641 ggu-gagg-- acu-cggga- uuga-uguu- agcu-ucc-- ---------- ---------- 5701 -------(uu ug--uu)--- ---------- ---------- ---------- --gg-gac-- 5761 uugaua-aug -cgaa-|cuc -guccaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS C.belgica 5903 bp RNA RNA 11-JAN-191 DEFINITION Cymatosira belgica. ACCESSION No information KEYWORDS No information. SOURCE Cymatosira belgica. ORGANISM Cymatosira belgica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85387 LOCUS CBRNAR18S 2317 bp DNA PLN 30-JUN-1996 DEFINITION C.belgica 18S rRNA gene. ACCESSION X85387 NID g1418410 KEYWORDS 18S rRNA; ribosomal RNA. SOURCE Cymatosira belgica. ORGANISM Cymatosira belgica Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae; Centrales; Cymatosiraceae; Cymatosira. REFERENCE 1 (bases 1 to 2317) AUTHORS Medlin,L.K., Gersonde,R., Kooistra,W.H.C.F., Sims,P.A. and Wellbrock,U. TITLE Evolution of the diatoms (Bacillariophyta):Implications from the fossil record and from nuclear-encoded small-subunit rRNAs JOURNAL Unpublished REFERENCE 2 (bases 1 to 2317) AUTHORS Medlin,L.K. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) L.K. Medlin, Alfred-Wegener-Institute, An Handelshafen 12, 27570 Bremerhaven, FRG BASE COUNT 614 a 482 c 545 g 675 t 3587 others ORIGIN 1 |********* ***--AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAU-AU--- ------uuu- ---ac-UUU- GAA]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAA<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGACU- CCG|GAGAGG G-GGCC(U-G AGAGAU)GGC CACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---UUCU)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUC-ugg uGggagcgac --CgguccG- --acgc-(UU A)-gcg-u-- ---ggGUacu 1801 UGC-g---uc gU-cuccGgc ca-----UCC U--------- ---------- ugggga---- 1861 --gaGu---- uu-gucuggc a(UUAAGU)u gucgggcag- ---agga--u ccuca----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACuUUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----CA CCA-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGAUA UU|--CGUAU UUCGuUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UaCGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|R--- UUUAUC-AA| GGUacgu(uu 3121 ga)auguugu ucuauugcug u|ucuaucuu aga|aggugc cuacuggagu gcacacacua 3181 caguaauuag aauacucgac ugcguggcac acauuuuuac ucaccuccua ucucucucua 3241 ucucucuucu gcucaccauu aucaaggAUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --GGGAU-UG GCG-G-a-Cg uu--(---CU UAU-----)- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-cg-uca-g Ca-ccgU--- ---------- ----AUGU(- 3661 GAAA-)ACA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG UAAGCUAUUU 3781 UUGGUGUCUA UUGUAUUGCA UUAGUUUGAG AUGGAAGAAA UAUUGACUUA GCAAGUAGGU 3841 CCCAGUUUAC AAGAAGUUAC UGCGUGACUG AGUCUUGCUG UGUCAACUUC GAAAAUCGAA 3901 AAAACUUGAA AUUAAUUUUG AAAUGUUAAG UUUGCUUAAU CACAAUUUAU GAUCACUAUU 3961 UCUCACUUUC CACCUUCCAU CAUUUCCCUU ACCCUCUAAC UAAUCUAUCA GGA-Gu|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUagu-- -uccgu---G ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aguga -UUUCucacu Gac--gAg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------ag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UGG-G -U-U(----- 5041 --A-UAAA)A AUCC-A-GGA AGAU-AGCGG CAAUAA--CA GGUGAGUUAU UUACUUAGUG 5101 UCCUACCUAU UCCGAGCAUC CAGAGCUGUU CUAUCUCCUU CUUAUCGUAA CCCUAACCCA 5161 ACCCUAUACC CUCACCCUAA CCCUACCGCU UACACUAACC AGGUCUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CGAG-CU--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAAccu-Ug gcc(GAGA-) ggccU----- gggCAAUCUU GUUAAC]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGAAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG GA-UGGUCC- 5641 GGU-GaAG-- cCU-CGGGA- UUgu-gguU- uggc-ugc-- ---------- ---------- 5701 -------(UU UA--UU)--- ---------- ---------- ---------- --gu-ggc-- 5761 cgUacc-gcg -agaa-|cUU -gUcuAaacc UU-AUC-A-U CUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS R.setige.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Rhizosolenia setigera. ACCESSION No information KEYWORDS No information. SOURCE Rhizosolenia setigera. ORGANISM Rhizosolenia setigera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87329 LOCUS Rhizoset 1870 BP DEFINITION Rhizosolenia setigera M87329 Bhattacharya et al. 1992 ORIGIN BASE COUNT 503 a 342 c 449 g 506 t 4103 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAU-A-Uuu ------u--- ---au-AGU- AAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-CAGU- AUU-AAUU-- ----UACAUG 241 AUAA<----- ---------- ---------- ---------- ---------- --U-CCUUAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -AGAUCAuUC -aa|guUUcu gC|--CCU-A UUA--GAUUU G-GAUGGCU- 1141 GU(-GUAUUG G)ACA-GCCA U-|GUCUU-U GAU|GGGU-A A-CGGA|GaA -U-(UAGG-) 1201 GUc-cGAuU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GUCU(---- ---ACUA)AG AU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 AAUUUCuggu g-ggag--cg a-ucgguc-c --aUcc--UU CACUgg-Uug gAac--cUga 1801 uu-gU----- cu-cccg-cc aUCCauggag ag-AAcu--U aucuggcaUU AAGUuguc-g 1861 gguUg--gCA a-uc-uuca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- uCUUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACuAUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GU---- ---g----cA CCA-UG-gUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UaUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC aAC|UA|--- 3421 --GAGAU-CG GCA-G-u-Ug uu----aAUA ugac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------a c-ug-uCG-G CA-UCUU--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUc-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-UUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAAUca CGUg------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aauga -AUUAucauu Gau--gAu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg---- uu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUU-G -G-U(----- 5041 --g-acua)A CCAA-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CGAG-CU--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UG GCC(GAGA-) GGCcU----- GGGCAAUCUU UUAAAC]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GAGG-- CCU-CGGGA- uugu-ggucU g-gu-uGc-- ---------- ---------- 5701 -------(UU UA--UU)--- ---------- ---------- ---------- --gG-aac-- 5761 cUgacu-gug -agaa-|cCU -gUccAAACC UU-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS R.setige.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Rhizosolenia setigera. ACCESSION No information KEYWORDS No information. SOURCE Rhizosolenia setigera. ORGANISM Rhizosolenia setigera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87329 LOCUS RIZRRNAA 1800 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Rhizosolenia setigera 16S-like ribosomal RNA, complete. ACCESSION M87329 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Rhizosolenia setigera (sub_species Brightw) rRNA. ORGANISM Rhizosolenia setigera Eukaryota; Fungi; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1800) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1773 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 503 a 341 c 450 g 506 t ORIGIN BASE COUNT 503 a 341 c 450 g 506 t 4103 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaauauu--- ---------- --uua-uagu aaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- auu-aauu-- ----uacaug 241 auaa<----- ---------- ---------- ---------- ---------- ---uccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -agaucauuc -aa|guuucu gc|--CCU-A UUA--GAUUU G-GAUGGCU- 1141 GU(-GUAUUG G)ACA-GCCA U-|GUCUU-U GAU|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUC-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GUCU(---- ---acua)AG AU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 aauuuc-ugg --uggg-agc gaucgg--u- cc-auccuuc acuggu-ugg ---------- 1801 ---------- ------a-a- ccugau-u-- --gucucccg ccauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cauggag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --agaac-u- u-aucuggca 2161 (uuaagu--- ---------- ---------- ---)ugucgg guug------ ---------- 2221 ----gca--- ------aucu ucauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCu----- ---------- ---------- ---------- 2521 -------uau -GCCGU-UGA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACuAUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-Gu---- ---g----ca CCA-UG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gagau-cg gca-g-u-ug uu--(----a auau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-a c-ug-ucg-g ca-ucuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-UUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ---------- ---[CCU-GC UAAAUAAuca c--gugaaug a--------a uua------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ucauugau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaugg- UU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUU-G -G-U(----- 5041 --gacua-)A CCAA-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgagcuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auaaccu-ug gcc(gaga-) ggcu-----g ggcaau-cuu uuaaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gagg-- ccu-cggga- uugu-gguc- uggu-ugc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --gg-aac-- 5761 cugacu-gug -agaa-|ccu -guccaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS S.costatum 5903 bp RNA RNA 11-JAN-191 DEFINITION Skeletonema costatum. ACCESSION No information KEYWORDS No information. SOURCE Skeletonema costatum. ORGANISM Skeletonema costatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85395 LOCUS SkelcosA 1870 BP DEFINITION Skeletonema costatum Atlantic clone janrines ORIGIN BASE COUNT 490 a 344 c 458 g 506 t 4105 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------AU AAGAUA-Cuu ------u--- ---a---UC- GAA]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAA<----- ---------- ---------- ---------- ---------- --UCCCUCAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UAUAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCUUG G-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGAA|UUG -U-(UAGG-) 1201 GCA-AGAUU- UCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---UUAC)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUC-ugg c-agga-gug gccggc-c-- acAcac---A CUgug--ugu g-AguugUg- 1801 uc-au----- -u-cugg-cc aUCCUuggug ag-aucc--u guuuggcaUU AAGUuguc-g 1861 ggcag--ggg a-ua-acca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACuUUGA 2581 GU-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----Ag UCA-AA-gUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --AGGAU-UG GCG-G-U-Ug uu--(----u uuu------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uCA-G CA-CUGU--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-U)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGacc c--gcg---- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aauag -CUUUuuauu Ggc--gAg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gu---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UUC-A -U-U(----- 5041 --cuacaa)G AUGA-A-GGA AGAU-GGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGUU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[UCAA CGAG-CA--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------U 5401 AUAACCU-UG GCC(GAGA-) GGCCU----G GGUAAU-CUU GUUAAC]--- ---------- 5461 -------UUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AU-CGC-AGU (-UCAUCAA- )ACUGC-A-A -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GAGG-- AGU-CGAGA- uugu-ggau- uagc-ucc-- ---------- ---------- 5701 -------(UU UA--UU)--- ---------- ---------- ---------- --gg-ggc-- 5761 uuaucc-gcg -agaa-|ccu -cuccAAACC UU-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.eccentri 5903 bp RNA RNA 11-JAN-191 DEFINITION Thalassiosira eccentrica. ACCESSION No information KEYWORDS No information. SOURCE Thalassiosira eccentrica. ORGANISM Thalassiosira eccentrica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85396 LOCUS Thaleccn 1870 BP DEFINITION Thalassiosira eccentrica P108 xm62 ORIGIN BASE COUNT 480 a 351 c 461 g 508 t 4103 others ORIGIN 1 |********* ***--AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaCUC----u ------uuu- ---acUUUG- AAA]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAG<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGAA|UUG -U-(UAGG-) 1201 GCA-AGAUU- UCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---UUAC)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUC-ugg caggagugac --cgguc--- --acgca(CU C)ugugSu-- ----g--acU 1801 ugU-g---uu gU-cucuggc ca-----UCC u--------- ---------- ugggga---- 1861 --gauc---- cu-guuuggc a(UUAAGU)u gucgggcag- ---ggga--u accca----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACuUCGG 2581 AA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----UU ACG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --GGGAU-CG GUG-G-UCUg uu--(----U UUU-----)- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-U c-ca-ucg-g Ca-ccgU--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-Gu|-GG 4021 AAC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-U)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-CG|- ---------- 4321 ---------- ---[CCU-GC UAAAUagu-- -ucuac---u ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aaugg -UUUUucauu ggu--aAg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------ag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UUC-A -U-U(----- 5041 --CUACAA)G AUGA-A-GGA AGAU-GGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGUU ACACU--G-A UGCAC----- ---------- 5281 ---------- -----[UCAA CGAG-CA--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAAccu-Ug gcc(GAGA-) ggccU----- gggUAAUCUU GUUAAC]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AU-CGC-GGU (-UCAUCAA- )ACCGC-A-A -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GAGG-- ACU-CGGGA- UUgk-gguu- Uggc-ucc-- ---------- ---------- 5701 -------(UU CA--UU)--- ---------- ---------- ---------- --gg-ggc-- 5761 cUgacc-gcg -agaa-|cUU -guccgaacc UU-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS A.glaciali 5903 bp RNA RNA 11-JAN-191 DEFINITION Asterionellopsis glacilia. ACCESSION No information KEYWORDS No information. SOURCE Asterionellopsis glacilia. ORGANISM Asterionellopsis glacilia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77701 LOCUS AG16SRR 1795 bp DNA PLN 22-FEB-1994 DEFINITION A.glacialis (CCAP 1009/1) 18S rRNA gene. ACCESSION X77701 KEYWORDS 18S ribosomal RNA. SOURCE Asterionellopsis glacilia ORGANISM Asterionellopsis glacilia Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1795) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1795) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456315 FEATURES Location/Qualifiers source 1..1795 /organism="Asterionellopsis glacilia" /strain="CCAP 1009/1" /note="Cast" rRNA 1..1795 /product="18S ribosomal RNA" BASE COUNT 472 a 341 c 466 g 516 t ORIGIN BASE COUNT 472 a 341 c 466 g 516 t 4108 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaaucuu--- ---------- --uua-cuuu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-cagu- uau-aauu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCA(---- ---uuuu)UG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuguggu u-ggaaaggu ccgccguugc uaugcuucgu guugga-uuu uuccguccau 1801 cc-uu---gg gu-ggau-cc ug-------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ug-- --uggca--u ucaguug--u cgugc--a-g ggg------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---a----ug c--------- ---------- 2221 ---------- --ccau--c- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCuuac-- ---------- ---------- ---------- 2521 ---------- -gccuu--GA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUgGG 2581 ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c--uauu 2821 -uu-guuggu -uu-gc---- --------ga CCG-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --gggau-ug gcg-g-u-ug uu----cguu uuga------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-u c-cg-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- cAAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUaguug ggu--gaa-- ---------- --ug--ac-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------ucgu ucauugac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uacag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UGC-A -U-g(----- 5041 --uuucaa)A AUGC-A-GGA GGAU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------u 5401 uguuccu-ug gcc(gaga-) ggcug----g gg--aaucuu guuaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- ccu-cggga- uugu-gacu- guuc-ugc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --gu--gg-- 5761 ucgguu-gcg -agaa-|cuu -gucuaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS F.striatul 5903 bp RNA RNA 11-JAN-191 DEFINITION Fragilaria striatula. ACCESSION No information KEYWORDS No information. SOURCE Fragilaria striatula. ORGANISM Fragilaria striatula. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77704 LOCUS FS18SRR 1789 bp DNA PLN 22-FEB-1994 DEFINITION F.striatula (CCAP 1029/18) 18S rRNA gene. ACCESSION X77704 KEYWORDS 18S ribosomal RNA. SOURCE Fragilaria striatula ORGANISM Fragilaria striatula Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1789) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1789) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456331 FEATURES Location/Qualifiers source 1..1789 /organism="Fragilaria striatula" /strain="CCAP 1029/18" /note="Lyngb" rRNA 1..1789 /product="18S ribosomal RNA" BASE COUNT 476 a 339 c 471 g 502 t 1 others ORIGIN BASE COUNT 476 a 339 c 471 g 502 t 4115 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaaucuu--- ---------- --uua-cuuu gaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAyU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---uuau)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GGAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuguggu u-ggguccgu ugguccggca cauugugcgg guacuu-gau ggacucgucc 1801 au-cc---uu gg-gugg-aa ucug------ ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ug-- --uggcauua --aguug--u cgugca---g ggg------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---a----ug c--------- ---------- 2221 ---------- --ccau--c- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCuuau-- ---------- ---------- ---------- 2521 ---------- -gccgu-uGA AUAUAU-UAG CAUGGAA|UA -AUGAGA-UA -GGACcUUGG 2581 ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c--uauu 2821 -uu-guuggu -uu-gc---- ---g----ca CCG-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGG-AAG- A-CGAACU-A CUGC(-AAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --gggau-ug gcg-g-u-cg uu----guau uga------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-u c-cg-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- cAAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCG-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUagucg gguu--aa-- ---------- --ug--aau- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------u-u ucauuggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uacaa- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UGC-G -U-U(----- 5041 --uuauaa)A ACGC-A-GGA AGAU-ACGGG CAAAAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[gcaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 a---ccu-ug gcc(gaga-) ggccu----g gga-aaucu- gugaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAG- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- ccu-cggga- uugu-gaug- aguu-ucc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --gg-gga-- 5761 uuuguc-gcg -agaa-|cuu -gucuaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS R.belgicae 5903 bp RNA RNA 11-JAN-191 DEFINITION Rhaphoneis belgicae. ACCESSION No information KEYWORDS No information. SOURCE Rhaphoneis belgicae. ORGANISM Rhaphoneis belgicae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77703 LOCUS RB18SRR 1790 bp DNA PLN 22-FEB-1994 DEFINITION R.belgica (Grun.) 18S rRNA gene. ACCESSION X77703 KEYWORDS 18S ribosomal RNA. SOURCE Rhaphoneis belgicae ORGANISM Rhaphoneis belgicae Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1790) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1790) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456357 FEATURES Location/Qualifiers source 1..1790 /organism="Rhaphoneis belgicae" /note="(Grun.) Grun" rRNA 1..1790 /product="18 S ribosomal RNA" BASE COUNT 469 a 348 c 470 g 501 t 2 others ORIGIN BASE COUNT 469 a 348 c 470 g 501 t 4115 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaaucuc--- ---------- --aua-cuuu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- CACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGC-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUS (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGU-CC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---uugu)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-USA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UUG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUU |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuugugga c-ggaguggc uggccucacu ugugagcgcu gugccu-uuu cca--uccau 1801 cc-uu---gg gu-ggaa-uc ug-------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ug-- --uggcauug --aguug--u cgugca---g ggg------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---a----ug c--------- ---------- 2221 ---------- --ccau--c- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCuugc-- ---------- ---------- ---------- 2521 ---------- -accuu--GA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUgGG 2581 ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c--uauu 2821 -uu-guuggu -uu-gc---- ---g----ca CCG-AG-GUA A--UGAUUAA UG--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --gggau-ug gcg-g-g-cg uu----cguu uuga------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-u c-cg-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- cAAGUC-UUU GGGU|-U|C- CGGGGGGAGU GU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)UCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUaguug ggc--gaa-- ---------- --ug--au-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------u-u ucauuggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uacag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UGC-A -U-U(----- 5041 --ucauaa)G AUGC-A-GGA GGAU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ucaa cgagucc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 u--uccu-ug gcc(gaga-) ggccu----g ggg-aaucuu uuuaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- ccu-cggga- uugu-gacc- aauu-ccc-- ---------- ---------- 5701 -------(uu ca--uu)--- ---------- ---------- ---------- --gg-gga-- 5761 uugguc-acg -agaa-|cuu -gucuaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS T.nitzschi 5903 bp RNA RNA 11-JAN-191 DEFINITION Thalassionema nitzschioides. ACCESSION No information KEYWORDS No information. SOURCE Thalassionema nitzschioides. ORGANISM Thalassionema nitzschioides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77702 LOCUS TN18SRR 1782 bp DNA PLN 22-FEB-1994 DEFINITION T.nitzschioides (CCAP 1084/1) 18S rRNA gene. ACCESSION X77702 KEYWORDS 18S ribosomal RNA. SOURCE Thalassionema nitzschioides ORGANISM Thalassionema nitzschioides Eukaryota; Plantae; Thallobionta; Chromophycota; Bacillariophyceae. REFERENCE 1 (bases 1 to 1782) AUTHORS Medlin,L.K., Williams,D.M. and Sims,P.A. TITLE The evolution of the diatoms (Bacillariophyta) I. origin of the group and assessment of the monophyly of its major divisions JOURNAL Eur. J. Phycol. 28, 261-275 (1993) STANDARD full automatic REFERENCE 2 (bases 1 to 1782) AUTHORS Medlin,L.K. JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. L.K. Medlin, Alfred Wegener Institute, Postfach 120161, 27515 Bremerhaven, FRG STANDARD full automatic COMMENT NCBI gi: 456372 FEATURES Location/Qualifiers source 1..1782 /organism="Thalassionema nitzschioides" /strain="CCAP 1084/1" /note="(Grun.). V.H" rRNA 1..1782 /product="18S ribosomal RNA" BASE COUNT 472 a 338 c 468 g 504 t ORIGIN BASE COUNT 472 a 338 c 468 g 504 t 4121 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaaucuc--- ---------- --uua-ccuu uaa]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-cagu- uau-aauu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|AAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---uugu)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A U-CGA-GGAC C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G -U-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuugugga u-uucgcggu ucggucgcac uaauugugug uacaug-agu cgugagucca 1801 uc-cu---ug gg-ugga-au cug------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ug-- --uggcauua g--guug--u cgugca---g ggg------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---a----ug c--------- ---------- 2221 ---------- --ccau--c- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCuuau-- ---------- ---------- ---------- 2521 ---------- -gccgu-uGA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUUGG 2581 ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c--uauu 2821 -uu-guuggu -uu-gc---- ---g----ca CCG-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|AA|--- 3421 --gggau-ug gcg-g-u-cg uu----guau uga------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-cg-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- cAAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-GC UAAAUaguu- --u------- ---------- --ug---cua 4381 augauu---- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------uuuc auugguau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cguaa- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UGC-G -U-U(----- 5041 --cuauua)G ACGC-A-GGA AGAU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[gcaa cgagugu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 a---ccu-ug gcc(gaga-) ggccu----g gga-aaucu- gugaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAG- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaag-- ccu-cggga- uugu-gaug- aguu-ucc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --gg-gga-- 5761 uuuguc-gcg -agaa-|cuu -gucuaaacc uu-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Chryso 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS C.chromoph 5903 bp RNA RNA 11-JAN-191 DEFINITION Chromulina chromophila. ACCESSION No information KEYWORDS No information. SOURCE Chromulina chromophila. ORGANISM Chromulina chromophila. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87332 LOCUS CMIRRNAA 1783 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Chromulina chromophila 16S-like ribosomal RNA, complete. ACCESSION M87332 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Chromulina chromophila (sub_species Stein) rRNA. ORGANISM Chromulina chromophila Eukaryota; Fungi; Chromophycota; Chrysophyceae. REFERENCE 1 (bases 1 to 1783) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1756 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 488 a 343 c 455 g 497 t ORIGIN BASE COUNT 488 a 343 c 455 g 497 t 4120 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgu---u ---------- -au-a-cagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- --uccu-ugc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U CAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGA- -GCCU(---- ---cuaa)AG GU-UU-GGCA C-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ugg u-cgug-ggc ucuggu--c- -c-uacccuc acgggu-uga ---------- 1801 ---------- ------g-u- accuga-uc- --ucgc-ggc cauc------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cucgggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --aaaau-a- u-aucuggca 2161 (uuuagu--- ---------- ---------- ---)uguugg guau------ ---------- 2221 ----agga-- -------ccc ucguc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AGCA--A 2461 AAUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------uAU -GCCGU-UGA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-Gc---- ------u-gu CCA-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-cg uu--(---ug uaac-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuug g--aucaaug c--------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gcauuggu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucag- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUU-G -G-U(----- 5041 --gacua-)A CCAA-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACAC----- ---------- 5281 ---(------ ----)[gcaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---uccu-ug ucc(gaaa-) ggucc----g gguaau-cuu guaaau]--- ---------- 5461 -------GUG UGU-C-G--- UGAU-U-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGC-GGG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAUUC- 5641 GGU-GAAA-- CUU-UCAGA- ccga-caug- aaga-ca-cc ---------- ---------- 5701 -------(cu cg----)--- ---------- ---------- ---------- -ggu-gac-- 5761 uuugua-uug -ggaa-|guu -auuuaaacc ua-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS H.magna 5903 bp RNA RNA 11-JAN-191 DEFINITION Hibberdia magna. ACCESSION No information KEYWORDS No information. SOURCE Hibberdia magna. ORGANISM Hibberdia magna. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87331 LOCUS HIBRRNAA 1785 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Hibberdia magna 16S-like ribosomal RNA, complete. ACCESSION M87331 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Hibberdia magna (sub_species Anderson) rRNA. ORGANISM Hibberdia magna Eukaryota; Fungi; Chromophycota; Chrysophyceae. REFERENCE 1 (bases 1 to 1785) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1758 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 480 a 341 c 467 g 497 t ORIGIN BASE COUNT 480 a 341 c 467 g 497 t 4118 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacagaucu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u ccu----ugc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCUA(---- ---uuu-)UA GU-CU-GGCA C-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg u-cgug-ugc aauguu--c- -a-gcuccua acgggg-uuc ---------- 1801 ---------- ------g-a- uucuuu-gu- -gugc---gu ccauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---uucgagg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggaau-u- u-aucuggca 2161 (uuaagu--- ---------- ---------- ---)ugucgg guaa------ ---------- 2221 ----agg--- ------aucc ucguc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AGCA--A 2461 AAUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------uAG GCCG-U-UGA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -AGACcUUGG 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uc|-UAUU 2821 -UU-GUUGGU -UA-Gu---- ------acu- cca-AG-GUA A--UGAUAAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-cg gug-g-a-cc uc--(----- guaau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gag-u u-ca-ucg-g ca-ucuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca c--gugaaug c--------u ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gcauuguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guugg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUC-G -G-U(----- 5041 --gacua-)A CCGA-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACAC----- ---------- 5281 ---(------ ----)[gcaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---uccu-ug ucc(gaaa-) ggucc----g gggaau-cuu -gaa-u]--- ---------- 5461 -------GUG UGU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGC-GGG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUUC- 5641 GGU-GAAA-- CUU-UCGGA- cugu-gaca- ggga-cg-cc ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -ggc-gau-- 5761 cuuguu-gug -ggaa-|guu -auuuaaacc uc-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS O.danica 5903 bp RNA RNA 11-JAN-191 DEFINITION Ochromonas danica. ACCESSION No information KEYWORDS No information. SOURCE Ochromonas danica. ORGANISM Ochromonas danica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M32704 LOCUS OCHAB 1789 bp ds-DNA PLN 15-JUN-1990 DEFINITION O.danica small subunit rRNA gene. ACCESSION M32704 J02950 KEYWORDS ribosomal RNA small subunit. SOURCE O.danica DNA. ORGANISM Ochromonas danica Eukaryota; Chromophycota; Chrysophyceae; Chrysophycidae; Ochromonadales. REFERENCE 1 (bases 1 to 1789) AUTHORS Gunderson,J.H., Elwood,H., Ingold,A., Kindle,K. and Sogin,M.L. TITLE Phylogenetic relationships between chlorophytes, chrysophytes, and oomycetes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 84, 5823-5827 (1987) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1789 /note="small subunit ribosomal RNA" BASE COUNT 479 a 341 c 464 g 505 t ORIGIN BASE COUNT 479 a 341 c 464 g 505 t 4114 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UU CU|GCCAGU- A-G-CA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcaa-ucu ---------- -ua-u-acgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----ucuuug 241 augg<----- ---------- ---------- ---------- ---------- --ucc-uugc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCAU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGUCA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGUUGG- -GCC-(---- ---uucg)-G GU-CU-GACA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaauuc-uga u-uucg-gau gucggu--c- ---ggcccca aggggu-uag ---------- 1801 ---------- ------u-a- ccgucu-gu- ----ucggaa ucauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cucgaga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggaac--- acgucuguca 2161 (uucagu--- ---------- ---------- ---)ugaugg gcgu------ ---------- 2221 ----ggg--- ------auuc ucguc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AGUA--A 2461 ACUAGAGUGU UC-AA-AG-C AGACAU---- ---------- ---------- ---------- 2521 -------CAU -GUCAU-UGA AUACGU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-G----- ------a-cu CCA-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-cg uu--(---gu aauu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGUcg u--cugaaug c--------c uag------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc auugaga--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uccGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUU-G -G-U(----- 5041 --gacua-)A CCAA-A-GGA AGUU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACAU----- ---------- 5281 ---(------ ----)[gcag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ug ucc(gaaa-) ggucu----g gguaau-cuu gucaau]--- ---------- 5461 -------GUG UGU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGC-GGG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAUUC- 5641 GGU-GAAA-- CUU-UCGGA- ccgu-gguu- cuug-ccac- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -gug-gug-- 5761 agaauc-gug -gaaa-|guu -auuuaaacc uc-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS M.papillos 5903 bp RNA RNA 11-JAN-191 DEFINITION Mallomonas papillosa. ACCESSION No information KEYWORDS No information. SOURCE Mallomonas papillosa. ORGANISM Mallomonas papillosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55285 LOCUS MALRR16S 1790 bp ss-rRNA PLN 05-FEB-1991 DEFINITION Mallomonas papillosa 16S ribosomal (small subunit) RNA. ACCESSION M55285 KEYWORDS 16S ribosomal RNA; protist. SOURCE Mallomonas papillosa (strain CCMP A3807) ribosomal RNA. ORGANISM Mallomonas papillosa Eukaryota; Plantae; Thallobionta; Chromophycota; Chrysophyceae; Chrysophycidae; Ochromonadales; Synuraceae. REFERENCE 1 (sites) AUTHORS Ariztia,E.V., Andersen,R.A. and Sogin,M.L. TITLE A new phylogeny for chromophyte algae using 16S-like rRNA sequences from Mallomonas papillosa (Synurophyceae) and Tribonema aequale (Xanthophyceae) JOURNAL Unpublished (1990) STANDARD full staff_review REFERENCE 2 (bases 1 to 1790) AUTHORS Bacher,N., Zisman,Y., Berent,E. and Livneh,E. TITLE Isolation and characterization of PKC-L, a new member of the protein kinase C-related gene family specifically expressed in lung, skin, and heart JOURNAL Mol. Cell. Biol. 11, 126-133 (1991) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1790 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 476 a 348 c 462 g 504 t ORIGIN BASE COUNT 476 a 348 c 462 g 504 t 4113 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacga-uuu ---------- -uu-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---uucuuac 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AU CGAUGCCGG- -GCUU(---- ---uuuu)AA GU-UU-GGCA C-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-uga u-cgug-gca accggu--c- -c-ucccuua acgggg-ugu ---------- 1801 ---------- ------g-u- acuagg-ua- -u--cugcgg ucauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cucgagg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ugcuc-g- u-aucuggca 2161 (uuaagu--- ---------- ---------- ---)ugucgg guac------ ---------- 2221 ----gcu--- ------aucc ucguc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AGCA--A 2461 AAUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------UAU -GCCUU-UGA AUAUUu-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-Gu---- ------a-uu CCA-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-g-cg uu--(---cg uaau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUcu u--aucaaug c--------u ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc auugaug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----uagG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuc-g -g-u(----- 5041 --gacua-)A CCGA-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACAC----- ---------- 5281 ---(------ ----)[gcaa cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ug gcc(gaaa-) ggucc----g gguaau-cuu guaaau]--- ---------- 5461 -------GUG UGU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAUUC- 5641 GGU-GAAA-- AUU-CCGGA- cugu-ggcu- cgga-cgcc- ---------- ---------- 5701 -------(cu cg----)--- ---------- ---------- ---------- -ggc-gac-- 5761 uuuguc-gua -ggaa-|guu -auuuaaacc uc-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AG~~~~~~ ~~~~~~~~|| ||| // LOCUS M.striata 5903 bp RNA RNA 11-JAN-191 DEFINITION Mallomonas striata. ACCESSION No information KEYWORDS No information. SOURCE Mallomonas striata. ORGANISM Mallomonas striata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87333 LOCUS MALRRNAA 1784 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Synura spinosa 16S-like ribosomal RNA, complete. ACCESSION M87333 M87335 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Mallomonas striata (sub_species Asmund) rRNA. ORGANISM Mallomonas striata Eukaryota; Fungi; Chromophycota; Chrysophyceae; Chrysophycidae; Ochromonadales; Synuraceae. REFERENCE 1 (bases 1 to 1784) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1757 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 482 a 341 c 453 g 507 t 1 others ORIGIN BASE COUNT 482 a 341 c 453 g 507 t 4120 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuauuua ---------- -ua-c-gagu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---uacuuac 301 u>AUAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCUU(---- ---auuu)AA GU-UU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuuc-ugg u-cgug-gca accggu--c- -c-gcccuuu acgggg-ugu ---------- 1801 ---------- ------g-u- accugg-uu- -ucugc--gu ccauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cucgagg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ugaac-g- u-uucuggca 2161 (uuaagu--- ---------- ---------- ---)ugucgg guuc------ ---------- 2221 ----ggu--- ------aucc ucguc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AGCA--A 2461 AAUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------uAG -GCCGU-UGA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-Gu---- ------a-uu CCG-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-cg uu--(---ug uuac-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 --------|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuca u--auuaaug ---------u agua------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -cauugau-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuugg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuc-g -g-u(----- 5041 --gacua-)A CCGA-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUR-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACAC----- ---------- 5281 ---(------ ----)[gcaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---uccu-ug ucc(gaaa-) ggucc----g gguaau-cuu guaaau]--- ---------- 5461 -------GUG UGU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAUUC- 5641 GGU-GAAA-- AUU-CCGGA- cugu-ggcu- cgaa-cg-cc ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- -ggc-gau-- 5761 cuugcu-gua -gaaa-|guu -auuuaaacc uc-AUC-A-U UUAG-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS S.spinosa 5903 bp RNA RNA 11-JAN-191 DEFINITION Synura spinosa. ACCESSION No information KEYWORDS No information. SOURCE Synura spinosa. ORGANISM Synura spinosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87336 LOCUS SYURRNAA 1792 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Synura spinosa 16S-like ribosomal RNA, complete. ACCESSION M87336 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Synura spinosa (sub_species Korsh) rRNA. ORGANISM Synura spinosa Eukaryota; Fungi; Chromophycota; Chrysophyceae; Chrysophycidae; Ochromonadales; Synuraceae. REFERENCE 1 (bases 1 to 1792) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1765 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 474 a 350 c 465 g 498 t 5 others ORIGIN BASE COUNT 474 a 350 c 465 g 498 t 4116 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacgacuuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u ucu----ucc 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCUU(---- ---uuuu)AA GU-UU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg u-agcg-aca gucggu---- cu-gccccuu acgggg-ugu ---------- 1801 ---------- ------g-u- acuugu-cu- -guugc--gu ccauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cucgggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --agaac-g- c-aucuggca 2161 (uuaagu--- ---------- ---------- ---)ugucgg gugu------ ---------- 2221 ----ggy--- ------aucc ucguc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUG UG-AGCA--A 2461 AAUAGAGUGU UC-RA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------uAG -GCCGU-UGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -GGACcUUGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -U--Gu---- ------a-uu CCA-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| AU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-cg yu--(----u guuac----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGRG ACCCC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGucu u--gcgaaug c--------c ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gcauucgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----guagg- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUC-G -G-U(----- 5041 --gacua-)a ccga-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACAC----- ---------- 5281 ---(------ ----)[gcac cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ---uccu-ug ucc(gaaa-) ggucc----g gguaau-cuu auaaau]--- ---------- 5461 -------gug ugu-c-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAuuc- 5641 ggu-gaaa-- auu-uugga- cugu-ggcu- aaga-cg-cc ---------- ---------- 5701 -------(cu cg----)--- ---------- ---------- ---------- -ggc-gac-- 5761 uuugcu-gug -ggaa-|guc -auuuaaacc uc-auc-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CRUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Dictyo 5903 bp RNA RNA 13-JAN-1999 DEFINITION Dictyochophyceae. ACCESSION No information KEYWORDS No information. SOURCE Dictyochophyceae. ORGANISM Dictyochophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS A.radians 5903 bp RNA RNA 11-JAN-191 DEFINITION Apedinella radians. ACCESSION No information KEYWORDS No information. SOURCE Apedinella radians. ORGANISM Apedinella radians. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U14384 LOCUS ARU14384 1808 bp DNA PLN 07-DEC-1994 DEFINITION Apedinella radians 18S small-subunit rRNA gene. ACCESSION U14384 KEYWORDS . SOURCE Apedinella radians. ORGANISM Apedinella radians Eukaryotae; Hyperchondria; Eukaryote crown group; Stramenopiles; Pedinellates; Apedinella. REFERENCE 1 (bases 1 to 1808) AUTHORS Saunders,G.W., Potter,D., Paskind,M.P. and Andersen,R.A. TITLE Cladistic analyses of combined traditional and molecular data sets reveal a new algal lineage JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1808) AUTHORS Saunders,G.W. TITLE Direct Submission JOURNAL Submitted (05-SEP-1994) Gary W. Saunders, School of Botany, University of Melbourne, Parkville, Victoria, 3052, Australia STANDARD full automatic COMMENT NCBI gi: 595802 FEATURES Location/Qualifiers source 1..1808 /organism="Apedinella radians" /isolate="MUCC204" primer_bind 1..20 /note="PCR 5' end primer" rRNA 1..1808 /product="18S small-subunit rRNA" primer_bind complement(1782..1808) /note="PCR 3' end primer" BASE COUNT 473 a 360 c 474 g 501 t ORIGIN BASE COUNT 473 a 360 c 474 g 501 t 4095 others ORIGIN 1 |~~~~~~~~~ ~~~~~CACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacga-au- -------cua --u-a-cugu gaa]------ 181 -----|---A CU|G-CGUA- CGGCU-CAUU AAAC-cagu- uau-aguu-- ----uauuug 241 auau<----- ---------- ---------- ---------- ---------- --uccccuac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CUUAGUCGG- -GCCG(---- ---uuuu)CG GU-CU-GACU U-UAGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--UGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuu----- ---c------ ugggu----- uc-uucgc-u a-gcu----- --uugguccg 1801 caagg---gc uucag----- -ugg-g---- ---------c ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 --------ug uuugaaucca uccucaggg- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -------gga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- -cucaug--- cuggu--a-- 2161 -uucauu--- ---------- ---------- -----uaucg ---------- ---------- 2221 ---guguggg aacgccugu- ---c------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AACA--A 2461 AUUAGAGUGU UC-AA-AG-C A-agg----- ---------- ---------- ---------- 2521 --------ug uacu---UGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -GGA-----c 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------u uuggugguuc 2701 uuucgagaua ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --------UU 2821 -UU-GUUGGU -UU-G----- ------cac- gcc-aaaGUA A--UGAUUAA ua--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUAG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAAG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CU-U -CGUAG|UCC UA--ACC-AU AAACGAUGCC GAC|UC|--- 3421 --gggau-ug gcg-g-u-cg au--(----u cuuuuau--- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cguc-u c-cg-uca-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUA-gcg c--cg----- g--------g aau------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ----gcuucg cauugccg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaucg- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-gua-u -g-g(----- 5041 --gacua-)c caua-c-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UACGU----- ---------- 5281 ---(------ ----)[gcaa caaguu---- ---------- ---------- ---------- 5341 ---------- ---uagaacc uuggc----- ---------- ---------- ---------- 5401 ---------- --c-gaga-- ggccu----g gguaau-cu- uugaac]--- ---------- 5461 -------GCG UAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AAG (-UCAUCAG- )CUUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--CG AA-gguaau- 5641 gau-gagc-- cgu-cagga- ---------- ---------- ---------- ---------- 5701 --------cc gu--cgguuu ggccuuaa-- ---------- ---------- --cg-ggu-- 5761 cuuuu-cgac ugaaa-|uuu -cugcaaauc cu-uac-c-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-A-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Eustig 5903 bp RNA RNA 13-JAN-1999 DEFINITION Eustigmatophyceae. ACCESSION No information KEYWORDS No information. SOURCE Eustigmatophyceae. ORGANISM Eustigmatophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS N.salina 5903 bp RNA RNA 11-JAN-191 DEFINITION Nannochloropsis salina. ACCESSION No information KEYWORDS No information. SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87328 LOCUS NACRRNAA 1797 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Nannochloropsis salina 16S-like ribosomal RNA, complete. ACCESSION M87328 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Nannochloropsis salina rRNA. ORGANISM Nannochloropsis salina Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Phytomastigophora; Eustigmatida; Eustigmatophyceae. REFERENCE 1 (bases 1 to 1797) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1770 /product="16S-like ribosomal RNA" /gene="16S-like rRNA" BASE COUNT 477 a 359 c 480 g 481 t ORIGIN BASE COUNT 477 a 359 c 480 g 481 t 4106 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-CGUCU-GA GA|------- |-------(- ---)[----- 121 ---------- --------au aaagag---u ---------- -uu-u-cucu gaa]------ 181 -----|---U CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --uccuuuac 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUC-U AAC|GGGU-A A-CGGA|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GGU-(---- ----uua)-A CU-CU-GGCU A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg c-gggg-acg gcuggu--c- gg-ucuc(ga aa)ggg-gcu ---------- 1801 ---------- -----gu--- acuguu-guu ---gg-uucc cgucau-c-- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cuugggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --agagc--g g-cucuuaca 2161 (uuaagu--- ---------- ---------- ---)ugucgg cguc------ ---------- 2221 ----gggau- --------cc cuauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 --------UA GGCC-C-UGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -CGAcCuugg 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u gguc|-UGUU 2821 -UU-GUUGGU -UU-GC---- ------A-CG CCA-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gug-g-g-ug ca--(----u uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c u-ca-ucg-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuac u--gggaaug c--------u ua-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gcauuguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----agaga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuc-g -g-c(----- 5041 --gcuag-)g ccga-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-ug ucc(ggaa-) ggacc----g gguaau-cuu -gaaau]--- ---------- 5461 -------GCG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAACUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-GAG (-UCAUCAG- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAuuc- 5641 ggu-gaag-- cuu-ucgga- uuac-gcca- ucag-c---- ---------- ---------- 5701 -------(cu cg----)--- ---------- ---------- ---------- -----gcc-- 5761 gacggc-gug -agaa-|guu -aucuaaacc uc-auc-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Labyri 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS L.haliotid 5903 bp RNA RNA 11-JAN-191 DEFINITION Labyrinthuloides haliotidis. ACCESSION No information KEYWORDS No information. SOURCE Labyrinthuloides haliotidis. ORGANISM Labyrinthuloides haliotidis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U21338 LOCUS LHU21338 1846 bp rRNA PLN 12-JUN-1995 DEFINITION Labyrinthuloides haliotidis 18S ribosomal RNA, partial sequence. ACCESSION U21338 KEYWORDS . SOURCE Labyrinthuloides haliotidis. ORGANISM Labyrinthuloides haliotidis Eukaryotae; mitochondrial eukaryotes; stramenopiles; Labyrinthulida; Thraustochytriidae; Labyrinthuloides. REFERENCE 1 (bases 1 to 1846) AUTHORS Leipe,D.D., Goggin,C.L., Tong,S., Gunderson,J.H. and Sogin,M.L. TITLE Stramenopiles and heterokontophyte algae JOURNAL Unpublished REFERENCE 2 (bases 1 to 1846) AUTHORS Goggin,C.L. TITLE Direct Submission JOURNAL Submitted (21-FEB-1995) Carolyn L. Goggin, Parasitology, University of Queensland, Brisbane, Queensland, 4072, Australia COMMENT NCBI gi: 857458 FEATURES Location/Qualifiers source 1..1846 /organism="Labyrinthuloides haliotidis" /specific_host="Haliotis kamtschatkana and Haliotis rufescens" rRNA <1..>1846 /product="18S ribosomal RNA" BASE COUNT 508 a 353 c 467 g 518 t ORIGIN BASE COUNT 508 a 353 c 467 g 518 t 4057 others ORIGIN 1 |~~~~~~~~~ ~~~ccAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcua--uu ---------- -aaua-cggu gaa]------ 181 -----|---A CU|G-CGUA- CGGCU-CAUU ACAA-cagu- aau-aaua-- ----uacaug 241 auau<----- ---------- ---------- ---------- ---------u uaacu--auc 301 u>ACAUGG-A UACUUGUGG( -C-AAAU)CU AGAAA-CAA- AACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -ga|guuucu gc|--CCC-A UCA--GUUGU C-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GACUG-U AAC|GGGU-G A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACUC -AAUGUC-A( ---auu--)C 1321 GACG-A-AGU -|A|GUGACG AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CCAUGGGGA- -GCCC(---- ---uuc-)GG GU-UU-CCCA A-UGGGAAU- 1501 ------GAGA ----GCAAUG -UAAA--UAC C-----UC-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--UGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-ugg u-aggaguga ccggac---- ---------- ---------- ---------- 1801 ---------- ---------c guuggacgaa uguccucugu uugu------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cuugugu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --caucu-c- u-ggccaucc 2161 -ucgcug--- ---------- ---------- -----gcauu uuuu------ ---------- 2221 ----uac--- ------guca gcguc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUCACUG UA-AAUA--A 2461 AUUAGGGUGU UC-CA-AG-C AGAUA----- ---------- ---------- ---------- 2521 ---------A UUUU-C-GGA AUAUUU-CAG UAUGGGA|UG -AUAAGA-UA -GGCuCucg- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- augc|-UAUU 2821 -UU-GUUGGU -UU-Gc---- ------a-ca uca-AG-AGA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UUAGAUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UUCGA-AAG- A-CGAACU-A CUGC(-GAAG )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-GU AAACUAUGCC GAC|UU|--- 3421 --gcgau-ug ucc-g-a-u- guu-(---ua uuuuaua--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----agac-a c-gg-gca-g -ca-gcac-- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-aAGC ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --G-Au|-gG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uggg-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCAC-GG|- ---------- 4321 ------(--- --)[CCU-AU UAAAUAGUAc ga-cuuaug- ---------g uaa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- cauagguu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----g-aga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-Uuu-c -g-g(----- 5041 --guuua-)c cggA-A-GGA AGUU-CGUGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UCGUU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ----uucau( -cuug)auga ---------- ---------- ---------- 5401 auauccu-ug gcc(ggaa-) ggucu----g gguaau-cuu uuaaau]--- ---------- 5461 -------GAC GAU-C-G--- UGAU-G-GGG CUAGAUUUU( UGCAAUUA)U UAAUCUCC-A 5521 ACGAGG-AAU C--CCUAGUA AA-UGC-AAG (-UCAUCAA- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGUUcc- 5641 ggu-gaga-- ccu-uugga- uucu-guauu cgaacuuuua uuagaacuua uacggaagaa 5701 auugag-caa ac--cuuaac auuuagagga aggugaaguc guacaggguu uccg-aac-- 5761 uuauac-gga -agaa-|auu -gagcaaacc uu-aac-a-u uuag-aggaa gg-UGAA-G- 5821 UCGUA-CAGG GU-------- -----U-U-C CGnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS L.minuta 5903 bp RNA RNA 11-JAN-191 DEFINITION Labyrinthuloides minuta. ACCESSION No information KEYWORDS No information. SOURCE Labyrinthuloides minuta. ORGANISM Labyrinthuloides minuta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L27634 LOCUS LADDLRRNA 1802 bp ss-rRNA RNA 22-MAR-1994 DEFINITION Labyrinthuloides minuta 16S-like ribosomal RNA (16S-like rRNA). ACCESSION L27634 KEYWORDS 16S-like rRNA; 16S-like ribosomal RNA. SOURCE Labyrinthuloides minuta rRNA. ORGANISM Labyrinthuloides minuta Eukaryota; Protista; Thraustochytridae. REFERENCE 1 (bases 1 to 1802) AUTHORS Leipe,D.D., Wainright,P.O., Gunderson,J.H., Porter,D., Patterson,D.J., Valois,F., Himmerich,S. and Sogin,M.L. TITLE The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minuta and Cafeteria roenbergensis JOURNAL Phycologia (1994) In press STANDARD full automatic COMMENT NCBI gi: 463127 FEATURES Location/Qualifiers primer_bind 1..21 /note="these residues correspond to the 5' amplification primer and were not determined from the coding region" primer_bind 1779..1802 /note="these residues correspond to the 3' amplification primer and were not determined from the coding region" source 1..1802 /organism="Labyrinthuloides minuta" /sequenced_mol="rRNA" BASE COUNT 497 a 340 c 453 g 512 t ORIGIN BASE COUNT 497 a 340 c 453 g 512 t 4101 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------gc aagcac--uu ---------- -gu-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------a uuuc---uac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|guuucu gc|--CCU-A UCA--GCUGU C-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCGU-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -GCCC(---- ---auc-)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg --uagg-agu gaccgu--u- cc-gaacuug auuguu-cgu ---------- 1801 ---------- ------g-u- auuguguu-- --uucuccag ccauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cuugugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --agaac-u- u-uucuugca 2161 (uuaauu--- ---------- ---------- ---)uguagg gauu------ ---------- 2221 ----ggg--- ------accc gcauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCA----- ---------- ---------- ---------- 2521 ---------a UCGC-U-UGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -GGAcUuugg 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uac|-UAUU 2821 -UU-GUUGGU -UU-GC---- ------a-ua cca-AA-UUA A--UGAUCAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU u--------- 3001 --UGAGGAUA UU|--CGUAU GAACAUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UUGAU-CAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUAUC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-a-c- guu-(---gu cuauau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cca-g -caccuc--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGugu g--cauauuc g--------a a--------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- agaaugug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uucga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-Uuu-c -g-g(----- 5041 --uuuua-)c cgga-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACAAU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-ug guu(gaaa-) agccu----g gguaau-cuu uugaac]--- ---------- 5461 -------UUU CGU-C-G--- UGAU-G-GGG CUAGACCCU( UGCAAUUA)U UGGUCUCC-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AAG (-UCAUCAG- )CUUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaaa-- ucu-ucgga- uuga-gacu- uuga-uuu-- ---------- ---------- 5701 -------cuu ca--cgg--- ---------- ---------- ---------- --aa-aac-- 5761 gcuguu-uua -aaaa-|guu -gauuaaacc uu-acc-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Oomyce 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS L.giganteu 5903 bp RNA RNA 11-JAN-191 DEFINITION Lagenidium giganteum. ACCESSION No information KEYWORDS No information. SOURCE Lagenidium giganteum. ORGANISM Lagenidium giganteum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M54939 X54266 LOCUS LAGRG16SL 1822 bp DNA PLN 29-JAN-1991 DEFINITION Lagenidium giganteum ribosomal RNA small subunit (16S-like) gene. ACCESSION M54939 NID g168280 KEYWORDS ribosomal RNA small subunit. SOURCE L.giganteum (strain ATCC 52675) DNA. ORGANISM Lagenidium giganteum Eukaryotae; mitochondrial eukaryotes; stramenopiles; Oomycetes; Lagenidales; Lagenidiaceae; Lagenidium. REFERENCE 1 (bases 1 to 1822) AUTHORS Forster,H., Coffey,M.D., Elwood,H. and Sogin,M.L. TITLE Sequence analysis of the small subunit ribosomal RNAs of three zoosporic fungi and implications for fungal evolution JOURNAL Mycologia 82, 306-312 (1990) BASE COUNT 486 a 338 c 469 g 529 t 4081 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaacuuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguc-- ----uacucg 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucgauu -ga|guuucu gc|--CCU-A UCA--GCUUU -GGAUGGUA- 1141 GG(-AUAUGG G)CCU-ACCA U-|GGCAU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-U AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCUCU- -GGCU(---- --cuucg)AG UC-GG-G-CA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg uuuga-gcgu ccggu----c c-gcuuccuc uggaagug-- ---------- 1801 ---------- --ug-uacua --a---ggau guuugagcca u-uuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------u gugag---ga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug u-u-c-uucu gcca(-uuaa 2161 gu----)ug- ---------- ---------- -gugguuga- augg------ ---------- 2221 ---a------ --cuugcauc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 --------uu ugcuca-uuG AAUACAUUAG CAUGGAA|UA -AUAAGA-UA -CGAcCuugg 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u ggUC|-UAUU 2821 -UU-GUUGGU -UU-Gc---- ------a-ca cca-gG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CAUAU UUCAACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUUGA-AAG- A-UGAGCU-U AGGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --gggau-ug gca-g-u-c- guu-(--uaa uuuuaau--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-ug-uca-g ca-ccgu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-CG|- ---------- 4321 ------(--- --)[CGU-GC UAAauagucu c--gcuuaca a--------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uugua gguuuuga-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuu-g gg-u(----- 5041 --aaucaa)a ccaa-A-GGA AGUU-GGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---(------ ----)[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 acaaccu-ug auc(gaua-) ggucu----g gguaau-cuu uugaau]--- ---------- 5461 -------GCG CAU-C-G--- UGCU-A-GGG AUAGAUUGU( UGCAAUUU)U CAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AAG (-UCAUCAG- )CUUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAcuc- 5641 ggu-gaaa-- aau-uggga- cugu-gaac- ucgu-uugc- ---------- ---------- 5701 -------(uu ca--uu)--- ---------- ---------- ---------g cgaa-ugag- 5761 uuu----gug -ggaa-|cuu -uuuuuaacc uc-gcc-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.megasper 5903 bp RNA RNA 11-JAN-191 DEFINITION Phytophtora megasperma subsp. same as GB - M54938. ACCESSION No information KEYWORDS No information. SOURCE Phytophtora megasperma subsp. same as GB - M54938. ORGANISM Phytophtora megasperma. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X54265 ID PME16S standard; DNA; FUN; 1827 BP. XX AC X54265; XX DT 04-OCT-1990 (annotation) XX DE Phytophtora megasperma 16S ribosomal RNA XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Phytophtora megasperma OC Eukaryota; Planta; Mycophyta; Mastigomycotina; Oomycetes. XX RN [1] (bases 1-1827) RA Foerster H., Coffey M.D., Elwood H., Sogin M.L.; RT "Sequence analysis of the small subunit ribosomal RNAs of three RT zoosporic fungi and implications for fungal evolution"; RL Mycologia 82:306-312(1990). XX CC *source: strain=glycinea. XX FH Key From To Description FH FT RRNA 1 1827 16S rRNA XX XX SQ Sequence 1827 BP; 476 A; 346 C; 479 G; 526 T; 0 other; BASE COUNT 476 a 346 c 479 g 526 t 4076 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacacuuuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguc-- ----uacucg 241 auag<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucgauu -ga|guuucu gc|--CCU-A UCA--GCUUU -GGAUGGUA- 1141 GG(-AUAUGG G)CCU-ACCA U-|GGCAU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-U AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCUCU- -GGCU(---- --cuucg)AG UC-GG-G-CA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugu uuugg-augu ccggu----c c-gcucccuc ugggagug-- ---------- 1801 ---------- --cg-uacuu a-u---ggau guucgaggca u-uuuu---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------u gugag---gc 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug c-c-u-uucu gcca(-uuaa 2161 gu----)ug- ---------- ---------- -guggguug- gugg------ ---------- 2221 ---g------ --cuugcauc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCGu---- ---------- ---------- ---------- 2521 ------uugc ucau-U-UGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -CGGcCuugg 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u ggUC|-UAUU 2821 -UU-GUUGGU -UU-Gc---- ------a-ca cca-gG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CAUAU UUCAGCG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCUGA-AAG- A-UGAGCU-U AGGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --gggau-ug gca-g-u-c- guu-(--uac uuuaaau--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-ug-uca-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-CG|- ---------- 4321 ------(--- --)[CGU-GC UAAauagucc c--gcuuacc a--------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uggua gguuugug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuu-g gg-u(----- 5041 --aaucaa)a ccaa-A-GGA AGUU-GGAGG CAAUAA--C- GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---(------ ----)[ucaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 acaaccu-ug auc(gaua-) ggucu----g gguaau-cuu gugaau]--- ---------- 5461 -------GCG CAU-C-G--- UGCU-A-GGG AUAGACUGU( UGCAAUUU)U CAGUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AAG (-UCAUCAG- )CUUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAcuc- 5641 ggu-gaaa-- aau-uggga- ucgu-gagu- ccgu-uugc- ---------- ---------- 5701 -------(uu ca--uu)--- ---------- ---------- ---------g cgag-ugga- 5761 uug----aug -agaa-|cuu -uuuuaaacc uc-gcc-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS A.bisexual 5903 bp RNA RNA 11-JAN-191 DEFINITION Achlya bisexualis. ACCESSION No information KEYWORDS No information. SOURCE Achlya bisexualis. ORGANISM Achlya bisexualis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M32705 LOCUS ACKAC 1809 bp ds-DNA PLN 15-JUN-1990 DEFINITION A.bisexualis small subunit rRNA gene. ACCESSION M32705 J02951 KEYWORDS ribosomal RNA small subunit. SOURCE A.bisexualis. ORGANISM Achlya bisexualis Eukaryota; Fungi; Eumycota; Mastigomycotina; Oomycetes; Saprolegniales; Saprolegniaceae. REFERENCE 1 (bases 1 to 1809) AUTHORS Gunderson,J.H., Elwood,H., Ingold,A., Kindle,K. and Sogin,M.L. TITLE Phylogenetic relationships between chlorophytes, chrysophytes, and oomycetes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 84, 5823-5827 (1987) STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1809 /note="small subunit ribosomal RNA" BASE COUNT 487 a 328 c 460 g 534 t ORIGIN BASE COUNT 487 a 328 c 460 g 534 t 4094 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaauuuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-aguc-- ----uacuug 241 auag<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -acaucaauu -ga|guuucu gc|--CCU-A UCA--GCUUU -GGAUGGUA- 1141 GG(-AUAUGG G)CCU-ACCA U-|GGCGU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-U AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGUCGG- -GCUU(---- ---uuu-)AA GU-CU-GACA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg uuuga-gcgu ccggu--c-g a-guuuaucu cuguacua-- ---------- 1801 ---------- --ug-gaugu ---------- --uugggcca u-u------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ------uuuu gugag---ga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug c---uuuucu gcca(-uuca 2161 gu----)ug- ---------- ---------- -gugguug-a guag------ ---------- 2221 ---a------ --cuugcauc ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCG----- ---------- ---------- ---------- 2521 ------uuug cucauu-uGA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -CGAcCuugg 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u ggUC|-UAUU 2821 -UU-GUUGGU -UU-GC---- ------a-ca ccg-AG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CAUAU UUCAACG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUUGA-AAG- A-UGAGCU-U AGGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --gggau-ug gca-g-u-c- guu-(---uu uuugaau--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-ug-uca-g ca-ccgu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AaGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-CG|- ---------- 4321 ------(--- --)[CGU-GC UAAAUAGUuc u--gcuuacc a--------a uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------ugg uagguaag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----GA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuc-a -g-u(----- 5041 --gacua-)a cuga-A-GGA AGUU-GGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UACGC----- ---------- 5281 ---(------ ----)[ucaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-ug auc(gaua-) ggucu----g gguaau-cuu uugaau]--- ---------- 5461 -------ACG UAU-C-G--- UGCU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AAG (-UCAUCAG- )CUUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAcuc- 5641 ggu-gaaa-- aau-uggga- ccgu-uaau- ucuc-uug-- ---------- ---------- 5701 -------(cu uc--au)--- ---------- ---------- ---------- ugug-agu-- 5761 caguug-aug -ggaa-|cuu -uuuuuaacc uc-gcc-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-Phaeop 5903 bp RNA RNA 13-JAN-1999 DEFINITION Phaeophyceae/Xanthophyceae group. ACCESSION No information KEYWORDS No information. SOURCE Phaeophyceae/Xanthophyceae group. ORGANISM Phaeophyceae/Xanthophyceae group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS F.distichu 5903 bp RNA RNA 11-JAN-191 DEFINITION Fucus distichus. ACCESSION No information KEYWORDS No information. SOURCE Fucus distichus. ORGANISM Fucus distichus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M97959 LOCUS FUU16SRNAA 1817 bp ds-DNA PLN 08-AUG-1992 DEFINITION Fucus distichus DNA sequence. ACCESSION M97959 KEYWORDS 16S-like ribosomal RNA; 18S ribosomal DNA; small subunit ribosomal RNA. SOURCE Fucus distichus DNA. ORGANISM Fucus distichus Eukaryota; Chromophycota; Phaeophyceae; Fucales; Fucaceae. REFERENCE 1 (bases 1 to 1817) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,E., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Evolution (1992) In press STANDARD full staff_entry BASE COUNT 463 a 381 c 492 g 481 t ORIGIN BASE COUNT 463 a 381 c 492 g 481 t 4086 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcga-uuu ---------- -au-a-cggu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- cau-aauu-- ----uauuug 241 aaag<----- ---------- ---------- ---------- ---------u cccu---uac 301 u>ACAUGG-C UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCUU(---- ---cuac)AA GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----GCAAUU -UAAA--UCC A-----UC-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuug-ugg c-gcgg-ccg uccggc--g- gg-gcucucu ucuggg-agc ---------- 1801 ---------- ------c-g- uuuguc-u-- -gguuu--uc ggccgc-gcc au-------- 1861 u--------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cuucgag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- aaagca---- ucggcuggca 2161 (uuaggu--- ---------- ---------- ---)ugucgg uucg------ ---------- 2221 ---auugcuc c------gau cg-------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---UUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------UAG GCCG-U-UGG AUACAU-UAG CAUGGAA|UA -AUGAGA-UA -GGACcACGA 2581 CG-g------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uc|-UAUU 2821 -UU-GUUGGU -UU-GC---- ------a-cg uug-ug-GUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-u-c- guu-(----a uucacag--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uca-g ca-ccuu--- ---------- ----ccGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUgg g--gcuuacg u--------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------acg uaggc--a-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcucG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuc-g -g-u(----- 5041 --gacua-)a ccga-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[gcaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ucaa------ 5401 ucucccu-gg gcc(ggaa-) ggucc----g gguaac-cuu uugaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUUU( UGUAAAUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-GAG (-UCAUCAG- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGUUuc- 5641 ggu-gaag-- auu-ccgga- ccgg-aacu- ugag-cgc-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- cggc-gca-- 5761 cuagcg-aag -ggaa-|guu -aucuaaacc uc-aac-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS F.gardneri 5903 bp RNA RNA 11-JAN-191 DEFINITION Fucus gardneri. ACCESSION No information KEYWORDS No information. SOURCE Fucus gardneri. ORGANISM Fucus gardneri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53987 ID FG16SRRNA standard; DNA; PLN; 1817 BP. XX AC X53987; XX DT 29-APR-1992 (Rel. 31, Created) DT 29-APR-1992 (Rel. 31, Last updated, Version 1) XX DE F.gardneri gene for 16S ribosomal RNA small subunit XX KW 16S ribosomal RNA small subunit. XX OS Fucus gardneri OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae; OC Fucales; Fucaceae. XX RN [1] RP 1-1817 RA Sogin M.L.; RT ; RL Submitted (11-JUL-1990) on tape to the EMBL Data Library by: RL Sogin M.L., Marine Biological Laboratory, Center for Molecular RL Evolution, Woods Hole, MA 02543, USA. XX RN [2] RA Bhattacharya D., Mayes C., Stickel S., Sogin M.L.; RT "Primary Structure of the small subunit rRNA coding region from RT the brown alga Fucus distichus"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA <1..>1817 FT /product="16S rRNA small subunit" XX SQ Sequence 1817 BP; 463 A; 381 C; 492 G; 481 T; 0 other; BASE COUNT 463 a 381 c 492 g 481 t 4086 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcga-uuu ---------- -au-a-cggu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- cau-aauu-- ----uauuug 241 aaag<----- ---------- ---------- ---------- ---------u cccu---uac 301 u>ACAUGG-C UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCUU(---- ---cuac)AA GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----GCAAUU -UAAA--UCC A-----UC-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuug-ugg c-gcgg-ccg uccggc--g- gg-gcucucu ucuggg-agc ---------- 1801 ---------- ------c-g- uuuguc-u-- -gguuu--uc ggccgc-gcc au-------- 1861 u--------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cuucgag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- aaagca---- ucggcuggca 2161 (uuaggu--- ---------- ---------- ---)ugucgg uucg------ ---------- 2221 ---auugcuc c------gau cg-------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---UUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------UAG GCCG-U-UGG AUACAU-UAG CAUGGAA|UA -AUGAGA-UA -GGACcACGA 2581 CG---g---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uc|-UAUU 2821 -UU-GUUGGU -UU-GC---- ------a-cg uug-ug-GUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-u-c- guu-(----a uucacag--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uca-g ca-ccuu--- ---------- ----ccGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUgg g--gcuuacg u--------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------acg uaggc--a-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcucG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuc-g -g-u(----- 5041 --gacua-)a ccga-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[gcaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ucaa------ 5401 ucucccu-gg gcc(ggaa-) ggucc----g gguaac-cuu uugaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUUU( UGUAAAUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-GAG (-UCAUCAG- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGUUuc- 5641 ggu-gaag-- auu-ccgga- ccgg-aacu- ugag-cgc-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- cggc-gca-- 5761 cuagcg-aag -ggaa-|guu -aucuaaacc uc-aac-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS C.costata 5903 bp RNA RNA 11-JAN-191 DEFINITION Costaria costata. ACCESSION No information KEYWORDS No information. SOURCE Costaria costata. ORGANISM Costaria costata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M97958 LOCUS COS16SRRNA 1816 bp ds-DNA PLN 08-AUG-1992 DEFINITION Costaria costata DNA sequence. ACCESSION M97958 KEYWORDS 16S-like ribosomal RNA; small subunit ribosomal RNA. SOURCE Costaria costata DNA. ORGANISM Costaria costata Eukaryota; Chromophycota; Phaeophyceae; Laminariales; Laminariaceae. REFERENCE 1 (bases 1 to 1816) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,E., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Evolution (1992) In press STANDARD full staff_entry BASE COUNT 448 a 372 c 501 g 495 t ORIGIN BASE COUNT 448 a 372 c 501 g 495 t 4087 others ORIGIN 1 |~~~~~~~~~ ~~~~~AAUCU GGU(UGA)UU CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaggcc-uuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- cau-aguu-- ----uauuug 241 aaag<----- ---------- ---------- ---------- ---------- --ucccuuac 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|guuucu gc|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GG-AGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GUUa(---- ----uac)AA GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----GCAAUU -UAAA--UCC A-----UC-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUC-AA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuug-ugg c-gcgg-ccg uccggc--g- gg-gcucuuu cauuag-ggc ---------- 1801 ---------- ------c-g- uuuguc-c-- -gguuuu-uc ggccgc-ucc au-------- 1861 u--------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----cucggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- uagcgu---- guugcuggca 2161 (uuaggu--- ---------- ---------- ---)ugucgg cuuc------ ---------- 2221 ----uucgc- --------gc cguc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUGCUG GG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 --------UA GGCG-U-UGG AUACAU-UAG CAUGGAA|UA --UGAGA-UA -GGGCcACGA 2581 CG-g------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uc|-UAUU 2821 -UU-GUUGGU -UU-GC---- ------a-cg uug-ug-GUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CGGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )---C|G--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-u-c- guu-(---aa uuuacag--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uca-g ca-ccuu--- ---------- ----ccGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)C-GUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUgu g--gcuuacg c--------u ucu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gug uagg---u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcucG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuc-g -g-u(----- 5041 --gacua-)a ccga-A-GAA -GUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---(------ ----)[gcaa cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- uuuu------ 5401 uuuuccu-gg guc(gaga-) ggccc----g gguaau-cug uugaac]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-GAG (-UCAUCAG- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGUUuc- 5641 ggu-gaag-- auu-ccgga- cugu-ggcu- cgcgugcu-- ---------- ---------- 5701 -------(uc ac----)--- ---------- ---------- ---------- -ggc-gcu-- 5761 ccugcc-gug -ggaa-|guu -aucuaaacc uc-aac-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS T.aequale 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M55286 LOCUS TBNRR16S 1829 bp ss-rRNA PLN 05-FEB-1991 DEFINITION Tribonema aequale 16S ribosomal (small subunit) RNA. ACCESSION M55286 KEYWORDS 16S ribosomal RNA; protist. SOURCE Tribonema aequale (strain UTEX 50) ribosomal RNA. ORGANISM Tribonema aequale Eukaryota; Plantae; Thallobionta; Chromophycota; Xanthophyceae; Tribonematales; Tribonemataceae. REFERENCE 1 (sites) AUTHORS Ariztia,E.V., Andersen,R.A. and Sogin,M.L. TITLE A new phylogeny for chromophyte algae using 16S-like rRNA sequences from Mallomonas papillosa (Synurophyceae) and Tribonema aequale (Xanthophyceae) JOURNAL Unpublished (1990) STANDARD full staff_review REFERENCE 2 (bases 1 to 1829) AUTHORS Bacher,N., Zisman,Y., Berent,E. and Livneh,E. TITLE Isolation and characterization of PKC-L, a new member of the protein kinase C-related gene family specifically expressed in lung, skin, and heart JOURNAL Mol. Cell. Biol. 11, 126-133 (1991) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1829 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 455 a 395 c 504 g 474 t 1 others ORIGIN BASE COUNT 455 a 395 c 504 g 474 t 4075 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~CCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcgc-cuu ---------- -au-a-cwgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-cagu- aau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u cccu---uac 301 u>ACCUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|guuucu gc|--CCU-A UCA--GCUUC G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|GAA -U-(UGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCUC(---- ----uuc)GA GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ugg g-gcgu-cgg augggc--c- cu-ggcuaac ggcuca-ggc ---------- 1801 ---------- ------u-a- gcccga-c-u -ccuggcgcc ccauc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----cgcggg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- --ggcuc-c- c-ccuuggca 2161 (uuaggu--- ---------- ---------- ---)uguugu gggg------ ---------- 2221 ----guu--- -----aagcc cgcc------ ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------UAG GCCG-U-UGG AUACAU-UAG CAUGGAA|UA -AUGAGA-UA -GGGCcUUGa 2581 ug-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --------ga agacgucaug ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --UC|-UAUU 2821 -UU-GUUGGU -UU-Gc---- ------a-cg cCA-AG-GCA A--UGAUUGA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gcg-g-u-c- gcc-(---uc uguau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-u c-cg-uca-g ca-ccuu--- ---------- ----ucGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCuc c--ccgcacg c--------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc gugacggg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cggcG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uuc-a -g-u(----- 5041 --gauua-)a cuga-A-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A CACCU----- ---------- 5281 ---(------ ----)[gcaa cgagcgu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 agaaccu-ug gcc(gaga-) ggccc----g gguaau-cuu uugaac]--- ---------- 5461 -------GGG UGU-C-G--- UGAU-A-GGG ACAGAUUAU( UGCAAUUA)U UAAUCUCG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-GAA (-UCAUCAG- )UUCGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAUUC- 5641 ggu-gaag-- auu-cggga- ccgu-gcca- gcuc-cgu-- ---------- ---------- 5701 -------(uc ac----)--- ---------- ---------- ---------- --gc-ggc-- 5761 gcuggc-gug -ggaa-|cuu -gucugaacc uc-auc-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Unclas 5903 bp RNA RNA 13-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS +PROTISTA 5903 bp RNA RNA 16-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS +APICOMPLE 5903 bp RNA RNA 16-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS ++CRYPTOSP 5903 bp RNA RNA 16-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS C.baileyi 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium baileyi. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium baileyi. ORGANISM Cryptosporidium baileyi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19068 LOCUS CYDRGEA 1733 bp ds-DNA INV 04-JUN-1993 DEFINITION Cryptosporidium baileyi 18S ribosomal RNA gene. ACCESSION L19068 KEYWORDS 18S ribosomal RNA; PCR primer; ribosomal RNA small subunit. SOURCE Cryptosporidium baileyi (individual_isolate AV-B1) oocyst DNA. ORGANISM Cryptosporidium baileyi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Cryptosporidiidae. REFERENCE 1 (bases 1 to 1733) AUTHORS Pieniazek,N.J., Arrowood,M.J., Blagburn,B.L., Mathews,H.M. and Slemenda,S.B. TITLE Molecular taxonomy of the genus Cryptosporidium JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /standard_name="PCR primer A of M.L. Sogin" /note="putative" rRNA 1..1733 /product="18S ribosomal RNA" /note="putative" primer_bind complement(1710..1733) /standard_name="PCR primer B of M.L. Sogin" /note="putative" source 1..1733 /organism="Cryptosporidium baileyi" /isolate="AV-B1" /dev_stage="oocyst" /sequenced_mol="DNA" BASE COUNT 519 a 317 c 397 g 500 t ORIGIN BASE COUNT 519 a 317 c 397 g 500 t 4170 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuucua- ---------- --uac-ggc- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- ---uccuuac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCC-(---- ---uaac)-G GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----UAAGUA -UAAA--CCC C-----UU-U A-CAA-GUAG C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu a-auac-uua uauacaauac cacgguauuu a-uaua-ac- -auuaacaua 1801 au-uc---ac au-uacu--u auuuaaagua ugugaaa--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCuauu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAUUA-AA -G-AUuUUUA 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuc 2821 -uu-auuggu -uc-uag--- --------ga UAA-AA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUAACAG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUagaca uaagaaaauu -auuu--cuu aucu-gucu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-U -G-U(----- 5041 --guuua-)A CACG-A-GGA AGUU-UUAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC G-CGCGCGCU ACACU--G-A UGUAU----- ---------- 5281 ---------- -----[ccau caagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 au-ucu---- --ccuguuuc gaaggaaaug gguaaucuu- augaau]--- ---------- 5461 -------AUA CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccau-acau- aaguagc--- ---------- ---------- 5701 -------(-- ------)--- ---------- ---------- -------aau ac-------- 5761 --augu-aag -gaaa-|guu -uuguaaacc uu-auc-a-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cry.muri.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium muris. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium muris. ORGANISM Cryptosporidium muris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L19069 LOCUS CYDRGEB 1743 bp ds-DNA INV 04-JUN-1993 DEFINITION Cryptosporidium muris 18S ribosomal RNA gene. ACCESSION L19069 KEYWORDS 18S ribosomal RNA; PCR primer; ribosomal RNA small subunit. SOURCE Cryptosporidium muris oocyst DNA. ORGANISM Cryptosporidium muris Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Cryptosporidiidae. REFERENCE 1 (bases 1 to 1743) AUTHORS Pieniazek,N.J., Arrowood,M.J., Blagburn,B.L., Mathews,H.M. and Slemenda,S.B. TITLE Molecular taxonomy of the genus Cryptosporidium JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /standard_name="PCR primer A of M.L. Sogin" /note="putative" rRNA 1..1743 /product="18S ribosomal RNA" /note="putative" primer_bind complement(1720..1743) /standard_name="PCR primer B of M.L. Sogin" /note="putative" source 1..1743 /organism="Cryptosporidium muris" /dev_stage="oocyst" /sequenced_mol="DNA" BASE COUNT 515 a 322 c 416 g 490 t ORIGIN BASE COUNT 515 a 322 c 416 g 490 t 4160 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuua- ---------- --uac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaaac 301 u>GCAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCC-(---- ---uaac)-G GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----GAAGUA -UAAA--CCC C-----UU-U A-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu g--uauaauu --uauaauau uaccaaggua auuauu-aua uuaucaacau 1801 cc-uu---cc ua-uuau-au ucuaaauaua uag--gaaa- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCaacu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAAGU-AA -GGACuUUUG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuc 2821 -uu-auuggu -uc-uag--- --------ga CAA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACAG-CC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUU-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUaggua auagaaauuu uauuu--cua ucuu-aucu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gccua-)A CGCG-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccag cgagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auauau---- --ccuguuuc gaaggaaaug gguaaucuu- augagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUU-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-- aau-ucgga- ccau-gcua- caguagc--- ---------- ---------- 5701 -------(-- ------)--- ---------- ---------- -----aauua ca-------- 5761 --uagc-aag -ggaa-|guu -ucguaaacc uu-auc-a-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cry.muri.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium muris. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium muris. ORGANISM Cryptosporidium muris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X64342 LOCUS CYD18SR221 2108 bp ds-DNA INV 25-SEP-1992 DEFINITION C.muris ribosomal RNA gene for 18S rRNA (pCMU221) ACCESSION X64342 KEYWORDS 18S ribosomal RNA; ITS1; internal transcribed spacer 1; ribosomal RNA gene. SOURCE Cryptosporidium muris DNA. ORGANISM Cryptosporidium muris Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Coccidia; Eucoccidiidae; Eimeriina; Eimeriidae. REFERENCE 1 (bases 1 to 2108) AUTHORS Cai,J., Collins,M.D., Macdonald,V. and Thompson,D. TITLE PCR cloning and nucleotide sequence determination of the 18s rRNA genes and internal transcribed spacer 1 of the protozoan parasites cryptosporidium parvum and C. muris JOURNAL Biochim. Biophys. Acta 1131, 317-320 (1992) STANDARD full automatic COMMENT *source: strain=RN66; *source: stage=oocyst; *source: clone= pCMU221; strains and isolates supplied by Dr. V. Macdonald, London school of hygiene and tropical medicine From EMBL entry CM18SR221; dated 07-AUG-1992. FEATURES Location/Qualifiers rRNA 1..1728 /note="18S" misc_feature 1729..2108 /note="internal transcribed spacer 1" BASE COUNT 634 a 348 c 453 g 671 t 2 others ORIGIN BASE COUNT 515 a 314 c 412 g 485 t 4177 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuua- ---------- --uac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaaac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCC-(---- ---uaac)-G GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----GAAGUA -UAAA--CCC C-----UU-U A-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu g-uauaaccu auaauauuac uaagguauau auaaua-uaa ucaacauccu 1801 uc-cu---au ua-uauu-uc uaaauauaua g----gaaa- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCaacu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAAGU-AA -GGACuUUUG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuc 2821 -uu-auuggu -uc-uag--- --------ga CAA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACAG-CC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)nG-U -nGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUaggua auagaaauuu -auuuuucua uauu-aucu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-U -G-U(----- 5041 --gucua-)A CGCG-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auauau---- --ccugcuuc gaaggaagug gguaaucuu- augagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUU-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-- aau-ucgga- ccau-gcua- cgaguag--- ---------- ---------- 5701 -------(-- ------)--- ---------- ---------- ----caaaua ca-------- 5761 --uagc-aag -gaaa-|guu -ucguaaacc uu-auc-a-C UUAG-AGGAA GG-AGAA-G- 5821 UCGCAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS Cry.muri.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium muris. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium muris. ORGANISM Cryptosporidium muris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X64343 LOCUS CYD18SR206 2108 bp ds-DNA INV 25-SEP-1992 DEFINITION C.muris ribosomal RNA gene for 18S rRNA (pCMU206) ACCESSION X64343 KEYWORDS 18S ribosomal RNA; ITS1; internal transcribed spacer 1; ribosomal RNA gene. SOURCE Cryptosporidium muris DNA. ORGANISM Cryptosporidium muris Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Coccidia; Eucoccidiidae; Eimeriina; Eimeriidae. REFERENCE 1 (bases 1 to 2108) AUTHORS Cai,J., Collins,M.D., Macdonald,V. and Thompson,D. TITLE PCR cloning and nucleotide sequence determination of the 18s rRNA genes and internal transcribed spacer 1 of the protozoan parasites cryptosporidium parvum and C. muris JOURNAL Biochim. Biophys. Acta 1131, 317-320 (1992) STANDARD full automatic COMMENT *source: strain=RN66; *source: stage=oocyst; *source: clone= pCMU206; strains and isolates supplied by Dr. V. Macdonald, London school of hygiene and tropical medicine From EMBL entry CM18SR206; dated 07-AUG-1992. FEATURES Location/Qualifiers rRNA 1..1728 /note="18S" misc_feature 1729..2108 /note="internal transcribed spacer 1" BASE COUNT 636 a 354 c 453 g 665 t ORIGIN BASE COUNT 517 a 318 c 412 g 481 t 4175 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuua- ---------- --uac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaaac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCC-(---- ---uaac)-G GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----GAAGUA -UAAA--CCC C-----UU-U A-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUAAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu g-uauaaccu auaauauuac uaagguauau auaaua-uaa ucaacauccu 1801 uc-cu---au ua-uauu-uc uaaauauaua ggaa--a--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCaacu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAAGU-AA -GGACuUUUG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuc 2821 -uu-auuggu -uc-uag--- --------gg CAA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGC ---------- 3001 --UGGGGGCA UU|--CGUAU AUAACAG-CC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUaggua auagaaauuu -auuuuucua uauu-aucu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCG-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auauau---- --ccugcuuc aaaggaagug gguaaucuu- augagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUU-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-- aau-ucgga- ccau-gcua- cgaguag--- ---------- ---------- 5701 -------(-- ------)--- ---------- ---------- ----caaaua ca-------- 5761 --uagc-aag -gaaa-|guu -ucguaaacc uu-auc-a-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS Cry.parv.1 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium parvum. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium parvum. ORGANISM Cryptosporidium parvum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L16997 LOCUS CYDRG18SB 1750 bp ds-DNA INV 24-MAY-1993 DEFINITION Cryptosporidium parvum 18S ribosomal RNA gene, complete. ACCESSION L16997 KEYWORDS 18S ribosomal DNA; 18S ribosomal RNA; rRNA; ribosomal RNA; ribosomal RNA small subunit. SOURCE Cryptosporidium parvum oocyst DNA. ORGANISM Cryptosporidium parvum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Cryptosporidiidae. REFERENCE 1 (bases 1 to 1750) AUTHORS Pieniazek,N.J., Arrowood,M.J., Blagburn,B.L., Mathews,H.M. and Slemenda,S.B. TITLE Molecular taxonomy of the genus Cryptosporidium JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="PCR primer A of M.L. Sogin; putative" rRNA 1..1750 /product="18S ribosomal RNA" /note="putative" primer_bind complement(1727..1750) /note="PCR primer B of M.L. Sogin; putative" source 1..1750 /organism="Cryptosporidium parvum" /dev_stage="oocyst" /sequenced_mol="DNA" /specific_host="CDC HA1:91" BASE COUNT 533 a 292 c 390 g 535 t ORIGIN BASE COUNT 533 a 292 c 390 g 535 t 4153 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaacuuuua- ---------- --uac-ggu- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- -ucuuuuacu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCAA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -ACU-(---- ---uuuu)-G GU-UU-UGUA A-UUGGAAU- 1501 ------GAGU ----UAAGUA -UAAA--CCC C-----UU-U A-CAA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu a-auaauuua uauaaaauau uuugaugaau auuuau-aua auauuaacau 1801 aa-uu---ca ua-uuac-ua uuuuuuuuuu uaguauauga aa-------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCauau-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAUUA-AA -G-AUuUUUA 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuu 2821 -uu-auuggu -uc-uaa--- --------ga UAA-GA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUAACAG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CAAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUagaca uaagaaauau uauauuuuuu aucu-gucu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-U -A-U(----- 5041 --guuua-)A UACA-G-GGA AGUU-UUAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC G-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau caagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auauau---- -uccuguuuc gaaggaaaug gguaaucuu- uugaau]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccau-acuu- uguagca--- ---------- ---------- 5701 -------(-- ------)--- ---------- ---------- --------au ac-------- 5761 --augu-aag -gaaa-|guu -ucguaaacc uu-auc-a-U UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cry.parv.2 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium parvum. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium parvum. ORGANISM Cryptosporidium parvum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L16996 LOCUS CYDRG18SA 1746 bp ds-DNA INV 24-MAY-1993 DEFINITION Cryptosporidium parvum 18S ribosomal RNA gene, complete. ACCESSION L16996 KEYWORDS 18S ribosomal DNA; 18S ribosomal RNA; rRNA; ribosomal RNA; ribosomal RNA small subunit. SOURCE Cryptosporidium parvum (individual_isolate AUCP-1) oocyst DNA. ORGANISM Cryptosporidium parvum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Cryptosporidiidae. REFERENCE 1 (bases 1 to 1746) AUTHORS Pieniazek,N.J., Arrowood,M.J., Blagburn,B.L., Mathews,H.M. and Slemenda,S.B. TITLE Molecular taxonomy of the genus Cryptosporidium JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers primer_bind 1..21 /note="PCR primer A of M.L. Sogin; putative" rRNA 1..1746 /product="18S ribosomal RNA" /note="putative" primer_bind complement(1723..1746) /note="PCR primer B of M.L. Sogin; putative" source 1..1746 /organism="Cryptosporidium parvum" /isolate="AUCP-1" /dev_stage="oocyst" /sequenced_mol="DNA" /note="individual isolate AUCP-1 found to be identical to Iowa isolate" BASE COUNT 535 a 293 c 390 g 528 t ORIGIN BASE COUNT 535 a 293 c 390 g 528 t 4157 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaacuuuua- ---------- --uac-ggu- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- --ucuuuacu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCAA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -ACU-(---- ---uuuu)-G GU-UU-UGUA A-UUGGAAU- 1501 ------GAGU ----UAAGUA -UAAA--CCC C-----UU-U A-CAA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu a-auaauuua uauaaaauau uuugaugaau auuuau-aua auauuaacau 1801 aa-uu---ca ua-uuac-ua uauauuuuag uauaugaaa- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCauau-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAUUA-AA -G-AUuUUUA 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuc 2821 -uu-auuggu -uc-uaa--- --------ga UAA-GA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUAACAG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CAAACU-A AUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUagaca uaagaaauau uauauuuuuu aucu-gucu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-U -A-U(----- 5041 --guuua-)A UACA-G-GGA AGUU-UUAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC G-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau caagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auauau---- -uccuguuuc gaaggaaaug gguaaucuu- uugaau]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccau-acuu- uguagca--- ---------- ---------- 5701 -------(-- ------)--- ---------- ---------- --------au ac-------- 5761 --augu-aag -gaaa-|guu -ucguaaacc uu-auc-a-U UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cry.parv.3 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium parvum. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium parvum. ORGANISM Cryptosporidium parvum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L25642 LOCUS CYDRG18S 1507 bp ds-DNA INV 18-JAN-1994 DEFINITION Cryptosporidium parvum 18S ribosomal RNA (18S rRNA) gene. ACCESSION L25642 KEYWORDS 18S ribosomal RNA. SOURCE Cryptosporidium parvum Oocyst DNA. ORGANISM Cryptosporidium parvum Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Eucocciodiorida; Eimeriorina; Cryptosporidiidae. REFERENCE 1 (bases 1 to 1507) AUTHORS Kilani,R.R.T.K. and Wenman,W.W.M. TITLE Geographical variation in 18S rRNA gene sequence of Cryptosporidium parvum JOURNAL Int. J. Parasitol. (1994) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1507 /product="18S ribosomal RNA" /gene="18S rRNA" source 1..1507 /organism="Cryptosporidium parvum" /dev_stage="Oocyst" /sequenced_mol="DNA" BASE COUNT 472 a 236 c 332 g 467 t ORIGIN BASE COUNT 472 a 236 c 332 g 467 t 4396 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaacuuuua- ---------- --uac-ggu- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- --ucuuuacu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCAA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -ACU-(---- ---uuuu)-G GU-UU-UGUA A-UUGGAAU- 1501 ------GAGU ----UAAGUA -UAAA--CCC C-----UU-U A-CAA-GUAU C---->AAUU 1561 GGAG|G--CA A-GU-C-UGG U-G(CCA-GC -AGCC|GCUG GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu a-auaauuua uauaaaauau uuugaugaau auuuau-aua auauuaacau 1801 aa-uu---ca ua-uuac-ua uauauuuuag uauau-aaa- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCa--u-- ---------- ---------- ---------- 2521 ---------- AUCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAUUA-AA -G-AUuUUUA 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuc 2821 -uu-auuggu -uc-uaa--- --------ga UAA-GA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUAAC-G-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CAAACU-A AUGC(-GAAA )--cg|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uaugg----- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUagaca uaagaaauau uauauuuuuu aucu-gucu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU--UG-U -A-U(----- 5041 --guuua-)A UACA---GGA AGUU-U-AGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG----GC G-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau caagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auauau---- -uccuguuuc gaaggaaaug gguaaucuu- uugaau]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--C~~~~~~ ~~~~~~~~~~ (-~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cry.parv.4 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium parvum. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium parvum. ORGANISM Cryptosporidium parvum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X64340 LOCUS CYD18SR911 2108 bp ds-DNA INV 04-SEP-1992 DEFINITION C.parvum ribosomal RNA gene for 18S rRNA (pCPA911) ACCESSION X64340 KEYWORDS 18S ribosomal RNA; ITS1; internal transcribed spacer 1; ribosomal RNA gene. SOURCE Cryptosporidium parvum DNA. ORGANISM Cryptosporidium parvum Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Coccidia; Eucoccidiidae; Eimeriina; Eimeriidae. REFERENCE 1 (bases 1 to 2108) AUTHORS Cai,J., Collins,M.D., Macdonald,V. and Thompson,D. TITLE PCR cloning and nucleotide sequence determination of the 18s rRNA genes and internal transcribed spacer 1 of the protozoan parasites cryptosporidium parvum and C. muris JOURNAL Biochim. Biophys. Acta 1131, 317-320 (1992) STANDARD full automatic COMMENT *source: stage=oocyst; *source: clone=pCPA911; *source: isolate=MD isolate; strains and isolates supplied by Dr. V. Macdonald, London school of hygiene and tropical medicine From EMBL entry CP18SR911; dated 07-AUG-1992. FEATURES Location/Qualifiers rRNA 1..1729 /note="18S" misc_feature 1730..2108 /note="internal transcribed spacer 1" BASE COUNT 635 a 353 c 450 g 667 t 3 others ORIGIN BASE COUNT 516 a 319 c 409 g 482 t 4177 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuua- ---------- --uac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaaac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCC-(---- ---uaac)-G GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----GAAGUA -UAAA--CCC C-----UU-U A-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu g-uauaaccu guaauauuac uaagguauau auaaua-uaa ucaacauccu 1801 uc-cu---au ua-uauu-uc uaaauauaua ggaa--a--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCaacu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAAGU-AA -GGACuUUUG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuc 2821 -uu-auuggu -uc-uag--- --------ga CAA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACAG-CC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)nG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UAGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ uccuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|CGGCU- nnU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUaggua auagaaauuu -auuuuucua uauu-aucu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCG-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auauau---- --ccugcuuc gaaggaagug gguaaucuu- augagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUU-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-- aau-ucgga- ccau-gcua- cgaguag--- ---------- ---------- 5701 -------(-- ------)--- ---------- ---------- ----caaaua ca-------- 5761 --uagc-aag -gaaa-|guu -ucguaaacc uu-auc-a-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS Cry.parv.5 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium parvum. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium parvum. ORGANISM Cryptosporidium parvum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X64341 LOCUS CYD18SR931 2103 bp ds-DNA INV 04-SEP-1992 DEFINITION C.parvum ribosomal RNA gene for 18S rRNA (pCPA931) ACCESSION X64341 KEYWORDS 18S ribosomal RNA; ITS1; internal transcribed spacer 1; ribosomal RNA gene. SOURCE Cryptosporidium parvum DNA. ORGANISM Cryptosporidium parvum Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Coccidia; Eucoccidiidae; Eimeriina; Eimeriidae. REFERENCE 1 (bases 1 to 2103) AUTHORS Cai,J., Collins,M.D., Macdonald,V. and Thompson,D. TITLE PCR cloning and nucleotide sequence determination of the 18s rRNA genes and internal transcribed spacer 1 of the protozoan parasites cryptosporidium parvum and C. muris JOURNAL Biochim. Biophys. Acta 1131, 317-320 (1992) STANDARD full automatic COMMENT *source: stage=oocyst; *source: clone=pCPA931; *source: isolate=MD isolate; strains and isolates supplied by Dr. V. Macdonald, London school of hygiene and tropical medicine From EMBL entry CP18SR931; dated 07-AUG-1992. FEATURES Location/Qualifiers rRNA 1..1728 /note="18S" misc_feature 1729..2103 /note="internal transcribed spacer 1" BASE COUNT 635 a 354 c 451 g 661 t 2 others ORIGIN BASE COUNT 517 a 320 c 410 g 481 t 4175 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcuuuua- ---------- --uac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- ---ucaaaac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -ca|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCUA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCC-(---- ---uaac)-G GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----GAAGUA -UAAA--CCC C-----UU-U A-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUAAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu g-uauaaccu guaauauuac uaagguauau auaaua-uaa ucaacauccu 1801 uc-cu---au ua-uauu-uc uaaauauaua ggaa--a--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCaacu-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAAGC-AA -GGACuUUUG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuc 2821 -uu-auuggu -uc-uag--- --------ga CAA-AA-GUA A--UGGUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACAG-CC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UAGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUaggua auagaaauuu -auuuuucua uauu-aucu- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --gucua-)A CGCG-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccaa cgagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auauau---- --ccugcuuc gaaggaagug gguaaucuu- augagu]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGUAAUUA)U UGAUCUUU-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-- aau-ucgga- ccau-gcua- cgaguag--- ---------- ---------- 5701 -------(-- ------)--- ---------- ---------- ----caaaua ca-------- 5761 --uagc-aag -gaaa-|guu -ucguaaacc uu-auc-a-C UUAG-AGGAA GG-AGAA-G- 5821 UCGCAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uuc~~~~~ ~~~~~~~~|| ||| // LOCUS C.wrairi 5903 bp RNA RNA 11-JAN-191 DEFINITION Cryptosporidium wrairi. ACCESSION No information KEYWORDS No information. SOURCE Cryptosporidium wrairi. ORGANISM Cryptosporidium wrairi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U11440 LOCUS CWRASRRN 1746 bp DNA INV 12-JUL-1994 DEFINITION Cryptosporidium wrairi small subunit ribosomal RNA gene. ACCESSION U11440 KEYWORDS . SOURCE Cryptosporidium wrairi ORGANISM Cryptosporidium wrairi Eukaryotae; Hyperchondria; Eukaryote crown group; Alveolates; Apicomplexa; Coccidia; Eimeriidae; Cryptosporidium. REFERENCE 1 (bases 1 to 1746) AUTHORS Pieniazek,N.J., Chrisp,C.E., Da Silva,A.J. and Slemenda,S.B. TITLE Small Subunit rRNA Sequence of Cryptosporidium wrairi (guinea pig isolate) JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1746) AUTHORS Pieniazek,N.J. TITLE Direct Submission JOURNAL Submitted (27-JUN-1994) Pieniazek N. J., Centers for Disease Control, Division of Parasitic Diseases, 4770 Buford Highway NE, Atlanta, GA 30341-3724, USA STANDARD full automatic COMMENT NCBI gi: 508811 FEATURES Location/Qualifiers rRNA 1..1746 /product="small subunit ribosomal RNA" primer_bind 1..21 /note="PCR primer A of M.L. Sogin; putative" primer_bind complement(1723..1746) /note="PCR primer B of M.L. Sogin; putative" source 1..1746 /organism="Cryptosporidium wrairi" /specific_host="Cavia porcellus" BASE COUNT 532 a 294 c 392 g 528 t ORIGIN BASE COUNT 532 a 294 c 392 g 528 t 4157 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaacuuuua- ---------- --uac-ggu- uaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAA-cagu- uau-aguu-- ----uacuug 241 auaa<----- ---------- ---------- ---------- ---------- --ucuuuacu 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -auaucauuc -aa|guuucu ga|--CCU-A UCA--GCUUU A-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCAA-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-A( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -ACU-(---- ---uuuu)-G GU-UU-UGUA A-UUGGAAU- 1501 ------GAGU ----UAAGUA -UAAA--CCC C-----UU-U A-CAA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuucuguu a-auaauuua uauauaauau uuugaaaaua uuuaua-uaa uauuaacaua 1801 au-uc---au au-uacu-au auauuuuuag uauaugaaa- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGAA--A 2461 AUUAGAGUGC UU-AA-AG-C AGGCauau-- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACUC-CAG CAUGGAA|UA -AUAUUA-AA -G-AUuUUUA 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------uuuc 2821 -uu-auuggu -uc-uaa--- --------ga UAA-GA-AUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--UGUAU UUAACAG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UGUUA-AAG- A-CAAACU-A GUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --gagau-ug gag-g-u--u guuccuuac- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cu-uca-g -c-accuu-- ---------- ----auGA(- 3661 GAAA-)UCa- -AAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGaca uaagaaauau uauauuuuuu aucu-gu--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-U -A-U(----- 5041 --guuua-)A UACA-G-GGA AGUU-UUAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCCGC G-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[ccau caagu----- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 auauau-ucc ugu-uucg-- -aaggaaaug gguaaucuu- uugaau]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUcc- 5641 ggu-gaau-- uau-ucgga- ccau-acuu- uguagca--- ---------- ---------- 5701 -------(-- ------)--- ---------- ---------- ---------- ------au-- 5761 acaugu-aag -gaaa-|guu -ucguaaacc uu-AUC-A-U UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS ++OTHER_AP 5902 bp RNA RNA 16-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5902) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5902 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ..|....... .......... .......... -......... 1141 .......... .......... .......... ..|....... .......... .......... 1201 .......... .......... .......... .......... ...-...... ....-..... 1261 .......... ........|. .......... .......... .......... .......... 1321 .......... |......... ...-...... .......... .......... .......... 1381 ....|..... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... -----..... .......... ....>..... 1561 .......... .......... .......... .......... .......... .-|....... 1621 .......|.. .......... ........|. .......... .......... .......... 1681 .......... .......... .......... .......... .......... |......... 1741 .......... -......... .......... .......... .....-.... .......... 1801 .-........ .-....-... .......... .......... .......... .......... 1861 .......... -......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ...-...... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .---...... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... ....|..... .......... 3001 .......... ..--...... .......... .......... .......... .......... 3061 .......... .......... .......... ....|..... ........|. .-----(--- 3121 -)-------- ---------- |--------- --|------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ------.... .......... ...-.|.... .......... 3301 .......... .......... ...------- ---------- ---------- ---------- 3361 --------.. .......... .......... .......... .......... ..|....... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... ......|... .......... .......... .......... 3721 .........- .......... ...|...... .......... .........- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- -....|.... 4021 .......|.. .......... ......-... .......... .......... .......... 4081 .......... .-----.... .......... -..--..... ....-----. ..-....... 4141 .......... ]........| .......... .......... .......... .......... 4201 .......... ..|....... .......... ...|...... ........-. .......... 4261 -......... .......... .......... .-........ .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ..-....... .......... .........- 4441 -......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ..-------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --........ |....|.... 5221 .......... .......... .......... .......... .......... .......... 5281 ...-...... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... ....-..--. ...-.-.... .......... .......... .......... 5521 .......... -......... .......... -......... .......... .......... 5581 .......... .|........ .......... .......... .......... .......... 5641 ..-.....-. .......... .......... .......... .......... .......... 5701 .....-.... .......... .......... .......... .......... .......-.. 5761 .......... .....|.... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......||| || // LOCUS G.caledia 5903 bp RNA RNA 11-JAN-191 DEFINITION Gregarina caledia. ACCESSION No information KEYWORDS No information. SOURCE Gregarina caledia. ORGANISM Gregarina caledia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L31799 LOCUS GNA18SRRA 1210 bp ds-DNA INV 20-APR-1994 DEFINITION Gregarina caledia 18S ribosomal RNA gene, partial. ACCESSION L31799 KEYWORDS 18S ribosomal RNA. SOURCE Gregarina caledia DNA. ORGANISM Gregarina caledia Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Gregarinia; Eugregarinida; Gregarinidae. REFERENCE 1 (bases 1 to 1210) AUTHORS Ninham,J.A. TITLE Phylogenetic analysis of five protoctist parasites of insects JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 473751 FEATURES Location/Qualifiers rRNA <1..>1210 /product="18S ribosomal RNA" /note="position 1 corresponds to position 581 of Plasmodium falciparum 18S rRNA" source 1..1210 /organism="Gregarina caledia" /sequenced_mol="DNA" /note="undescribed species" BASE COUNT 312 a 268 c 318 g 312 t ORIGIN BASE COUNT 312 a 268 c 318 g 312 t 4693 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGCUG-CAG| UUA--AAGCG UCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuucguuc g-cacgggua ggaugccgau ugauucuuug gaguca-ucg ugcgcuuucc 1801 cc-ag---ug aa-cuug-ag ggaaauaucc agccugcugg auguucuccu c--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGCA--A 2461 AUUGGAGUGC UC-CA-AC-C AGGCuu---- ---------- ---------- ---------- 2521 --------ac GCU--U--GA ACAGCU-CAG CAUGGAA|UA -ACAAGA-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CUUC 2821 -UU-GUUGGU -GU-CA---- --ug----aa CCAAAA-GUA A--UGGUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGGA|CAUA ---------- 3001 --CGGGGGCA UU|--UGUAC UUGCUGG-AG -AGAG(GU-G AAA---)UUC U-AAGA-C-C 3061 CAGCA-AAG- A-CAAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-CA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GUG ---UACCUAU -UAA-U|CA- A-GGACGAAA 3301 GUUGGGGGA- UCGAAGACG( CUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC CA--ACU-AU AAACUAUGCC GAC|UG|--- 3421 --Aggau-cg gag-g-c-cg uaacaauacg a--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------c u-cu-ucg-g -c-acUcc-- ---------- ----aaGA(- 3661 GAAA-)UCU- -AAGUC-UCU GGGC|-C|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|--G 4021 AGC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG CC[cgg-aca 4081 uagu-cauga uu-----gac aga(ucgaga g-u)------ uccuu----- cuc-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUCGG- U|GAG(-GUG 4261 A-)CUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GGACGAG ACCUC-GA|- ---------- 4321 ---------- ---[CCU-GC UAACUAGcag acacuuacag auaguaagug ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuuag- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-U -G-A(----- 5041 --gucua-)U CACA-A-GGA AGUU-CGAGC CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGGC CUGG-GCUGC A-CGUGCGCU ACAAU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- --------ua 5401 cccuuc---u ucc(guuc-) ggagu----g ggcaaucuu- uugaaa]--- ---------- 5461 -------CUC UGU-C-G--- UGAU-A-GGG AUUGACCCU( UGCAAUUA)U GGGUCAUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-AAC-AAG (-UCAUCAC- )CUUGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUUC-A-A CC-GAU--UG GA-UGAUCC- 5641 ggc-aaac-- ugu-acaga- cauu-ugga- auua-ccugg ag-------- ---------- 5701 -------(uu c-----)--- ---------- ---------- ---------- cucu-agg-- 5761 cuuucg-agc -ggaa-|gua -ccgugagcc uu-AUC-A-U CUAG-AGGAU GA-AGAA-G- 5821 UCGUAACACG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCG~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS G.chortioc 5903 bp RNA RNA 11-JAN-191 DEFINITION Gregarina chortiocetes. ACCESSION No information KEYWORDS No information. SOURCE Gregarina chortiocetes. ORGANISM Gregarina chortiocetes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L31841 LOCUS GNA18SRRB 1210 bp ds-DNA INV 20-APR-1994 DEFINITION Gregarina chortiocetes 18S ribosomal RNA gene, partial. ACCESSION L31841 KEYWORDS 18S ribosomal RNA. SOURCE Gregarina chortiocetes DNA. ORGANISM Gregarina chortiocetes Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Gregarinia; Eugregarinida; Gregarinidae. REFERENCE 1 (bases 1 to 1210) AUTHORS Ninham,J.A. TITLE Phylogenetic analysis of five protoctist parasites of insects JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 473752 FEATURES Location/Qualifiers rRNA <1..>1210 /product="18S ribosomal RNA" /note="position 1 corresponds to position 581 of Plasmodium falciparum 18S rRNA" source 1..1210 /organism="Gregarina chortiocetes" /sequenced_mol="DNA" /note="undescribed species" BASE COUNT 310 a 266 c 319 g 315 t ORIGIN BASE COUNT 310 a 266 c 319 g 315 t 4693 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AAU UGCUG-CAG| UUA--AAGCG UCCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuu----- ---------- ---------- ---------- ---------- cguucg---c 1801 ---------- --------ac ---------- ------gggu aggaugccga uugagucuuc 1861 ggauucaucg ugcgcuuucc cuagugaacu ugagggaaac uuucagcuug cugaauguuc 1921 uccuc----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CGUUACUU UG-AGCA--A 2461 AUUGGAGUGC UC-CA-AC-C AGGCuu---- ---------- ---------- ---------- 2521 --------AC GCU--U--GA ACAGCU-CAG CAUGGAA|UA -ACAAGA-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-CUUC 2821 -UU-GUUGGU -GU-CA---- --ug----aa CCA-aaaGUA A--UGGUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGGA|CAUA ---------- 3001 --CGGGGGCA UU|--UGUAC UUGCUGG-AG -AGAG(GU-G AAA---)UUC U-AAGA-C-C 3061 CAGCA-AAG- A-CAAACA-A CUGC(-GAAA )--GA|C--- UUUGCC-CA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------GUG ---UACCUGU -UAA-U|CA- A-GGACGAAA 3301 GUUGGGGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC CA--ACU-AU AAACUAUGCC GAC|UG|--- 3421 --aggau-cg gag-g-c-cg u----a---- -acaauac-- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------ga-c u-cu-ucg-g -c-acucc-- ---------- ----AAGA(- 3661 GAAA-)UCU- -AAGUC-UCU GGGC|-C|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AG--UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG CC[cgg-aca 4081 uagu-cauga uu-----gac agu(ucgaga g-u)------ ucuuu----- cuc-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUCGG- U|GAG(-GUG 4261 A-)CUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GGACGAG ACCUC-GA|- ---------- 4321 ---------- ---[CCU-GC UAACUagcaa acauuuacag acc------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guaagug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuuag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-U -G-A(----- 5041 --gucua-)U CACA-A-GGA AGUU-CGAGC CUAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGGC CUGG-GCUGC A-CGUGCGCU ACAAU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguauu-- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 acccuuc--u ucc(guuc-) ggagu----g ggcaau-cuu uugaaa]--- ---------- 5461 -------CUC UGU-C-G--- UGAU-A-GGG AUUGACCCU( UGCAAUUA)U GGGUCAUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-GAC-AAG (-UCAUCAC- )CUUGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUUC-A-A CC-GAU--UG GA-UGAUCC- 5641 ggc-aaac-- ugu-acaga- cauu-ugaa- acca-ccugg ag-------- ---------- 5701 -------(uu c-----)--- ---------- ---------- ---------- cucu-agg-- 5761 cuuucg-agu -ggaa-|gua -ccgugagcc uu-AUC-A-U CUAG-AGGAU GA-AGAA-G- 5821 UCGUAACACG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCG~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.lepidiot 5903 bp RNA RNA 11-JAN-191 DEFINITION Pseudomonocystis lepidiota. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonocystis lepidiota. ORGANISM Pseudomonocystis lepidiota. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L31843 LOCUS PNT18SRRA 1196 bp ds-DNA INV 20-APR-1994 DEFINITION Pseudomonocystis lepidiota 18S ribosomal RNA gene, partial. ACCESSION L31843 KEYWORDS 18S ribosomal RNA. SOURCE Pseudomonocystis lepidiota DNA. ORGANISM Pseudomonocystis lepidiota Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsea; Gregarinia. REFERENCE 1 (bases 1 to 1196) AUTHORS Ninham,J.A. TITLE Phylogenetic analysis of five protoctist parasites of insects JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 473764 FEATURES Location/Qualifiers rRNA <1..>1196 /product="18S ribosomal RNA" /note="position 1 corresponds to position 581 of Plasmodium falciparum 18S rRNA" source 1..1196 /organism="Pseudomonocystis lepidiota" /sequenced_mol="DNA" /note="undescribed species" BASE COUNT 326 a 227 c 302 g 341 t ORIGIN BASE COUNT 326 a 227 c 302 g 341 t 4707 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~)~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~(~ ~~~)[~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~]~~~~~~ 181 ~~~~~|~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~>~~~~~~~~ ~~~~~~~~~( ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) 361 ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~|~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~|~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~~~~~ 1081 ~~~~~~~~~> ~~~~~~~~~~ ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~(~~~~~~~ ~)~~~~~~~~ ~~|~~~~~~~ ~~~|~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) 1201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~~~~)~~~ ~~~~~~~~~~ (~~~~~)~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~)~ 1321 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ 1381 |~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ 1561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~~~|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuauguu g-gcgaaagu caguugc--- ---cuucauu agguuu-auu guacuuucaa 1801 ca-ac---au ug-gucu-ac ugcuuggcaa cuucacugcu gucaauccag uagagc---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCgcagu- ---------- ---------- ---------- 2521 ---------- GCCU-U--GA AUACC--CAG CAUGGAA|UA -ACAAAu-AA -GGACuUCGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c--uuuu 2821 -uu-guuggu -uu-gg---- --a-----gg CCG-AA-GUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UGGGGGCA UU|--CGAAU UUGGUAG-CU -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UACCA-AAG- A-CGGACU-A CUGC(-GAAA )--GA|C--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACU-AU AA-CGAUGCC AAC|UA|--- 3421 --gagau-ug gaa-a-u-u- guca------ ---------- ----cuuauu gaca------ 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- u-uu-uca-g -c-accuu-- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-CC( --GCAA-)GU 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|--G 4021 AG-CUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-aauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUagaca ccaaggucau aaccuuggcu gugc-u---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-C -G-U(----- 5041 --aucua-)A CGCA-C-GGA AGUU-UAAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucag cgaguau--- ---------- -----uccau gaccuguuaa 5341 gguuggguaa ucuugugaau ---------- ---------- ---------- ---------- 5401 ---------- ---------- ---------- ---------- ------]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-U-GGG CUAGAUGA-( UGUAAUUA)U UCAUCUUU-A 5521 ACGAGG-AAU U--CCUAGUA AG-UAC-AAG (-UCAUUAG- )-UUGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCCUC-A-A UC-GAC--UG GA-UGAUCC- 5641 ggu-gaau-- ggc-ucaga- cugg-gaug- cagg-ug--- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- ---------- ---c-auc-- 5761 uacguc-uug -ggaa-|guu -cugugaacc aa-AUC-A-U CUGA-AGAAU GA-GAAA-G- 5821 UCGUAACAUG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCG~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Per.marinu 5903 bp RNA RNA 11-JAN-191 DEFINITION Perkinsus marinus. ACCESSION No information KEYWORDS No information. SOURCE Perkinsus marinus. ORGANISM Perkinsus marinus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75762 ID PMSSRRNA standard; RNA; INV; 1793 BP. XX AC X75762; XX DT 12-NOV-1993 (Rel. 37, Created) DT 12-NOV-1993 (Rel. 37, Last updated, Version 1) XX DE P.marinus small subunit rRNA. XX KW SSU gene; SSU ribosomal RNA. XX OS Perkinsus marinus OC Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsiea; Perkinsida; OC Perkinsidae. XX RN [1] RA Fong D., Ford S.E., Rodriguez R.; RT ; RL Unpublished. XX RN [2] RP 1-1793 RA Fong D.; RT ; RL Submitted (08-NOV-1993) on tape to the EMBL Data Library by: RL D. Fong, Rutgers, The State Univ. of New Jersey, Dept of Biological RL Sciences, Piscataway, New Jersey 08855-1059, USA XX FH Key Location/Qualifiers FH FT source 1..1793 FT /organism="Perkinsus marinus" FT rRNA 1..1793 FT /gene="ssrRNA" FT /product="small subunit ribosomal RNA" XX SQ Sequence 1793 BP; 469 A; 355 C; 459 G; 510 T; 0 other; BASE COUNT 469 a 355 c 459 g 510 t 4110 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu---u ---------- -aaac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 guga<----- ---------- ---------- ---------- ---------- --ucgauuac 301 u>AUUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCU-A UCA--GCUAU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCGU-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGCAA- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGAG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCA-(---- ---auuc)-U GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----AGAUUU -UAAA--UCU C-----UU-U A-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-C-G| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucugcc u-uggg-cga ccgauccacc uuuccuacgg gauugguugg uaucagguuu 1801 ga-cc---uu gg-cuuu-uu cuugggauuc gugcccacgu acuuaacugu gcguugaccg 1861 uguuccaaga c--------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGGA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuuau-- ---------- ---------- ---------- 2521 ---------- GCCA-U--GA AUACAU-UAG CAUGGAA|UA -AUAGGA-UA -UGACuUCGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --au|--aUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AA----)UUC U-UGGA-U-U 3061 UGUUA--AG- A-CGAACU-A CUGC(-GAAA )--CA|G--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug ggg-g-u-cg uu--(--aau uuua-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-cc-uca-g -caccuc--- ---------- ----guGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (AUUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGUug c--gcgaaac ---------- --uu-uau-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guuucgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cgcuA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-U -G-U(----- 5041 --auuua-)A CACA-A-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 A-G-A-UGU- CUGG-GCUGC A-CGCGCCCU ACACU--G-A CACGA----- ---------- 5281 ---(------ ----)[ucaa caaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ug ccc(ggua-) ggguu----a ggguaaucuu uugaaa]--- ---------- 5461 -------UCG UGU-C-G--- UGCU-A-GGG AUAGACGAU( UGCAAUUA)U UCGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CAC-GC-CGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagc-- ugu-ccgga- cu-g-cauu- aguu-cag-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --cu-guu-- 5761 cucuu-cgcg -ggaa-|guu -cugcaaacc uu-AUC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAU----- 5881 --CAA~~~~~ ~~~~~~~~|| ||| // LOCUS Perkins.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L07375 LOCUS PKIPHYLPOS 1792 bp ds-DNA INV 14-JUN-1993 DEFINITION Perkinsus sp. ribosomal DNA small subunit gene sequence. ACCESSION L07375 KEYWORDS ribosomal DNA small subunit. SOURCE Perkinsus sp. sporangia after 5 days in fluid thioglycollate medium DNA. ORGANISM Perkinsus sp. Eukaryota; Animalia; Protozoa; Apicomplexa; Perkinsiea; Perkinsida; Perkinsidae. REFERENCE 1 (bases 1 to 1792) AUTHORS Goggin,C.L. and Barker,S.C. TITLE Phylogenetic position of the genus Perkinsus (Protista, Apicomplexa) based on small subunit ribosomal DNA JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..1792 /organism="Perkinsus sp." /dev_stage="sporangia after 5 days in fluid thioglycollate medium" /sequenced_mol="DNA" BASE COUNT 463 a 354 c 464 g 511 t ORIGIN BASE COUNT 463 a 354 c 464 g 511 t 4111 others ORIGIN 1 |--------- ---------U GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu---- ---------- uaaac-ggc- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAA-cagu- uau-aguu-- ----uauuug 241 guga<----- ---------- ---------- ---------- ---------- --ucgauuac 301 u>AUUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaccauuc -aa|guuucu ga|--CCU-A UCA--GCUAU G-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCGU-U GAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aua--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCA-(---- ---auuc)-U GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----AGAUUU -UAAA--UCU C-----UU-U A-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucugcc u-ugggcgac cgguccaccu uuccuacggg uuaggu-ugg uaucagguuu 1801 ga-cc---uu gg-cuuu-uu cuugggauuc gugcucacgc acuuaacugu gcguugaccg 1861 uguuccaaga c--------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGGA--A 2461 AUUAGAGUGU UU-CA-AG-C AGGCuuau-- ---------- ---------- ---------- 2521 ---------- GCCG-U--GA AUACAU-UAG CAUGGAA|UA -AUAGGA-UA -UGACuUCGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---a|-uauu 2821 -uu-guuggu -uu-cu---- --ag----ga CUG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUUA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GA-CGAAA 3301 GUUAGGG-A- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --Ggauu-gg guc-g-u-u- ----(--aau uua------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-cc-uca-g ca-cCuc--- ---------- ----guGA(- 3661 GAAA-)UCA- -AAGUC-UUU -GGU|-U|C- C-GGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 Acg-UGCG|G CU-UAAUUUG (AUUCAA-CA )CGGG--AAA ACUCACCAGG UC[cag-aca 4081 uagg-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuug c--gagaaac ---------- --uu-uau-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -guuucgc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cgcua- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUG-U -G-U(----- 5041 --guuua-)A CACA-A-GGA AGCU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A CACGA----- ---------- 5281 ---(------ ----)[ucaa caaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccuu--g ccc(ggua-) ggguu---ag gguaaucuu- uugaaa]--- ---------- 5461 -------UCG UGU-C-G--- UGCU-A-GGG AUAGACGAU( UGCAAUUA)U UCGUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AA-UGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUCC- 5641 ggu-gagc-- ugu-ccgga- cugc-gauu- aguu-cag-- ---------- ---------- 5701 -------(uu u-----)--- ---------- ---------- ---------- --cu-guu-- 5761 cuuuuc-gcg -ggaa-|guu -cugcaaacc uu-AUC-A-C UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUAGCAG AAGGAU~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS +F/M-INCER 5903 bp RNA RNA 05-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .....-.... 5881 .......... ........|| ||| // LOCUS D.salmonis 5903 bp RNA RNA 11-JAN-191 DEFINITION Dermocystidium salmonis. ACCESSION No information KEYWORDS No information. SOURCE Dermocystidium salmonis. ORGANISM Dermocystidium salmonis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U21337 LOCUS DSU21337 1780 bp rRNA BCT 12-JUN-1995 DEFINITION Dermocystidium salmonis 18S ribosomal RNA, partial sequence. ACCESSION U21337 KEYWORDS . SOURCE Dermocystidium salmonis. ORGANISM Dermocystidium salmonis Eukaryotae; mitochondrial eukaryotes; unclassified mitochondrial eukaryotes; Dermocystidium. REFERENCE 1 (bases 1 to 1780) AUTHORS Goggin,C.L., Munholland,J.A., Jamieson,A.C., Ragan,M.A., Rand,T.G. and Cawthorn,R.J. TITLE Phylogenetic position of Dermocystidium sp. (Protista) inferred from ribosomal DNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1780) AUTHORS Goggin,C.L. TITLE Direct Submission JOURNAL Submitted (21-FEB-1995) Carolyn L. Goggin, The University of Queensland, Brisbane, Queensland, 4072, Australia COMMENT NCBI gi: 857457 FEATURES Location/Qualifiers source 1..1780 /organism="Dermocystidium salmonis" /specific_host="Onchorhynchus tschawytscha" /dev_stage="cyst" rRNA <1..>1780 /product="18S ribosomal RNA" BASE COUNT 487 a 330 c 448 g 513 t 2 others ORIGIN BASE COUNT 487 a 330 c 448 g 513 t 4125 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CnnA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaaucu ---------- -auac-ugu- gaa]------ 181 -----|---G CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------- --uaccuuac 301 c>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG G)CUU-ACCA U-|GGUUA-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUU(---- ---uua-)AA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuuggga u-uuuggucg guugguccgc cg-caa---g guguu----- ---------- 1801 ---------- ---------- ---------- ---------- --guaccgag ccagccaauc 1861 cuuucgcuuc u-cgaaagcg gcgugugccc u-ucacugug gugugcgucc gucuuauuuc 1921 gggac----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCgu---- ---------- ---------- ---------- 2521 --------uu GCU--U--GA AUAUUU-CAG CAUGGAA|UA -AUGGAA-UA -GGACAUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CCA-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACU-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gua-g-augu ua--(cuuuu a--------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-ua-uca-g -caccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuug cgugauu--- uucg------ ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------a aucacuu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gguaa cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUU-G -G-U(----- 5041 --guuua-)A CCAA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UAAAG----- ---------- 5281 ---(------ ----)[gcaa cgaguu---- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 aucaccu-gu acc(ggaa-) gguau----g gguaaccuuu ucaaa-]--- ---------- 5461 -------CUU UAU-C-G--- UGCU-G-GGG AUAGAUCUU( UGCAAUUU)U CGAUCUUA-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUUU- 5641 agu-gagg-- ucu-ucgga- uugg-cguu- cugc-agcug ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- ---------- cagc-agc-- 5761 ggagug-ccg -aaaa-|guu -gaucaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C Cnnnnn(nnn n)nnnnnnnn nnnnnnnn-- 5881 --nnn----- -------~|| ||| // LOCUS Dermocy.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Dermocystidium sp.. ACCESSION No information KEYWORDS No information. SOURCE Dermocystidium sp. ORGANISM Dermocystidium sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U21336 LOCUS DSU21336 1821 bp rRNA BCT 12-JUN-1995 DEFINITION Dermocystidium sp. 18S ribosomal RNA, partial sequence. ACCESSION U21336 KEYWORDS . SOURCE Dermocystidium sp. ORGANISM Dermocystidium sp. Eukaryotae; mitochondrial eukaryotes; unclassified mitochondrial eukaryotes; Dermocystidium. REFERENCE 1 (bases 1 to 1821) AUTHORS Goggin,C.L., Munholland,J.A., Jamieson,A.C., Ragan,M.A., Rand,T.G. and Cawthorn,R.J. TITLE Phylogenetic position of Dermocystidium sp. (Protista) inferred from ribosomal DNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1821) AUTHORS Goggin,C.L. TITLE Direct Submission JOURNAL Submitted (21-FEB-1995) Carolyn L. Goggin, The University of Queensland, Brisbane, Queensland, 4072, Australia COMMENT NCBI gi: 857456 FEATURES Location/Qualifiers source 1..1821 /organism="Dermocystidium sp." /specific_host="Salvelinus fontinalis" /dev_stage="cyst" rRNA <1..>1821 /product="18S ribosomal RNA" BASE COUNT 502 a 340 c 454 g 525 t ORIGIN BASE COUNT 502 a 340 c 454 g 525 t 4082 others ORIGIN 1 |--------- ----cAACCU GGU(UG-)UC CU|GCCAGUa A-GUCA-UAU --GCUUGUCU 61 CCAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaaucu ---------- -auac-ugu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|GGUCC-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUU(---- ---uuu-)AA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--CCC C-----UU-A A-CGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GC-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuuggga u-uugg-ucg auuggucc-g ccgcaa---g guguug---- --uaccgagu 1801 ca-gc---ca au-ccuu-uc gcuucccgaa agcggcgcg- -ug--cucuu ---------- 1861 ---------- ---------- ---------- ---aauuguu gugugcgucc gucuuauuuc 1921 gggac----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCga---- ---------- ---------- ---------- 2521 --------uu GCU--U--GA AUAUUU-CAG CAUGGAA|UA -AUGGAA-UA -GGACAUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- --ag----ga CCA-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gua-g-augu ua--(auuau a--------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-u c-ua-uca-g -caccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uggu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuug cgugauu--- uucg------ ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------a aucacuu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gguaa cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUU-G -G-U(----- 5041 --guuua-)A CCAA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UAAAG----- ---------- 5281 ---(------ ----)[gcaa cgaguu---- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 aucaccu-gu acc(ggaa-) gguau----g gguaaucuuu ucaaa-]--- ---------- 5461 -------CUU UAU-C-G--- UGCU-G-GGG AUAGAUCUU( UGCAAUUU)U CGAUCUUA-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUUU- 5641 agu-gagg-- ucu-ucgga- uugg-cgcu- ucgc-agcug ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- ---------- cagc-agu-- 5761 gagaug-ccg -aaaa-|guu -gaucaaucu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCUA-- 5881 --C------- -------~|| ||| // LOCUS +HAPTOPHYC 5903 bp RNA RNA 05-JAN-1999 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .]........ .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .-........ .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Chr.polyle 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AJ004868 LOCUS Chrypoly 1823 BP DEFINITION Chrysochromulina polylepis B11.seq ORIGIN BASE COUNT 456 a 384 c 491 g 459 t 4113 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CaAA|-GAUU AA-gCCaUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagCGA--cu ------ugu- ---ac-UGU- GAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-CAGU- UAU-GGUU-- ----UauUUG 241 AUGG<----- ---------- ---------- ---------- ---------- --UACCUUAC 301 U>AcUugg-a uaCcCGuag( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGUUCAuuc -aa|auUUcu gC|--CCU-A UCA--GCUUU C-GAUGGUA- 1141 GG(-AUCGAG G)CCU-ACCA U-|GGCGU-U UAC|GGGU-A A-CGGA|GAA -G-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGA UACC-ACAUC (CAAG-)gAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-GCCC GAaUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUA(---- ---UUU-)UA GU-CU-UGUA A-UUGGAAu- 1501 ------GAGU ----ACAAUU -UACA--UCU C-----UU-C A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G -U-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACg CUCGUAGUCG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUC-ggg gcgugccg-c cggucugCCG AUGGGUAUGC acuggc---- --ggGgGcgu 1801 c--------- ------c-uU cCUuccggag ac-ugguccu A----cucuu aacugagc-g 1861 ggguc---gg g-agucgga- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuU ug-AAAA--A 2461 AUCAGAGUGU UU-CA-AG-C AGGCAG---- ---------- ---------- ---------- 2521 -------C-U cgcuCU-UGC AUGGAU-UAG CAUGGGa|UA -AUGAAA-UA -ggaCuUUGG 2581 UG-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CG---- ---a---aCA CCG-AA-gUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAgU ---------- 3001 --CaggGGCA CU|--CGUAU UCCGCcG-ag -aGAG(GU-G AAA---)UUC u-CAGA-C-c 3061 AGCGG-AAG- A-CGAACC-A CUGC(-GAAA )--gC|a--- UUuGCC-ag| gG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAC -UGA-U|CA- A-GAACgAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACCAUGCC gAC|UA|--- 3421 --GGGAU-CG GCG-g-A-AG UCC-UUUU-- Ugac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cg-uCG-G CA-CCUU--- ---------- ----AUgg(- 3661 GAAA-)CUA- -UAGUC-UUU GGGU|-u|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--gAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-gg 4021 AGCcUGCG|G CU-UAAUUUg (ACUCAA-CA )cgGG--gAA ACUUACCAGG UC[CAG-ACA 4081 UUGU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 GAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|gU-UC UUa|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AG|- ---------- 4321 ---------- ---[CCU-AU UAAaUAGUgg CGCG------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aacac -CUUGUU-GG CGG---UU-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----CA---- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CuUAGAGG]- --|------- ---------- GACA-ACU-U -G-U(----- 5041 --C-uuca)A CAAG-u-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A--UGU UCUGGGCCGC a-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---------- -----[UCAA CGAG-UC--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 C---gcu-CG ACC(GAGA-) GGUc------ GgcAAACCUU UUGAAC]--- ---------- 5461 -------UUG CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAACUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA ag-CGC-AUG (-UCAUCAg- )CGUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGuA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUCC- 5641 GGU-GAGG-- CCC-CCGGA- cugu-ggca- acgcagcuG- ---------- ---------- 5701 --------GU UC-GCC---- ---------- ---------- ---------- --AS--cg-- 5761 cgaugc--CG -S-gaa|gCU GUcc-AAacc UU-auc-a-u uuag-aggAa gg-agAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Pha.antarc 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77477 BASE COUNT 454 a 391 c 494 g 457 t 4107 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGu- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagCGAc--u ------ugu- ---ac-UGU- GAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAuu aAAU-CAGU- UAU-gGUU-- ----UCUUUG 241 AUGG<----- ---------- ---------- ---------- ---------- --UACCUUGC 301 U>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGyUCAUUC -aa|auuUcu gC|--CCU-A UCa--GCUUU C-GAUGGUA- 1141 GG(-auAGAg g)CCU-ACCA U-|GGCGu-U AAC|GGGu-a a-CGGA|GAa -U-(UAGG-) 1201 GyU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-GCCC GAAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUA(---- ---CUUC)UA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAACU -UACA--UCU C-----UU-C A-CGA-GGAU S---->AAUU 1561 GGAG|GG-CA A-Gu-CCUGG U-G(YCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUaA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCgggu c-gGgccgag cgguCUgccG AUGgguAUGC acuguu-u-- -gg-cGcggc 1801 cu-uc---uu uc-cgga-ga ccgcgGcuAc ucU------- ---------U AACUgagC-g 1861 ggcgu---gg g-agacgga- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCgUUuacuu ug-aAAA--A 2461 AUCAgAGUGU UU-cA-AG-c agGcag---- ---------- ---------- ---------- 2521 -------C-U CGcuCU-uGC AUGGAU-UAG CAuGGGA|UA -AUuGAA-UA -ggaCuCUGG 2581 ug-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -Uu-GUUGGU -UU-CG---- ---A---Acm CCG-GA-gUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAgU ---------- 3001 --CAgGGGCA CU|--CGUAU UCCGUCG-Ag -aGAG(GU-G AAA---)UUC u-cAGA-C-C 3061 AaUGG-AAG- A-CGAaCC-A CuGC(-GAAA )--GC|a--- UUUGCC-Ag| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAC -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACCAUGCC GAC|UA|--- 3421 --GGGAU-UG GAG-G-g-Ug uuC-GUUU-- Cgac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------c u-cu-uCA-G CA-CCUU--- ---------- ----ACGG(- 3661 GAAA-)CUA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--gAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUg (ACUCAA-CA )cgGG--gAA ACUUACCAGG UC[CAG-ACA 4081 UUGU-UAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 GAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|gU-UC UUa|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGU-AG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAGUUc cGCg------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----AacUU -CUUGUU-gg CGg---uC-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-ACU-U -G-U(----- 5041 --G-acca)A CAAG-u-GGA AGUU-UGCGG CAAuAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A--UGU UCUGGGCCGC A-CGCGCGCU ACACU--g-A AGcAc----- ---------- 5281 ---------- -----[UCAA CGAG-UC--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 CA--CCU-CG ACC(gACA-) -GUcU----- GGGAAACCUU UUGAAA]--- ---------- 5461 -------uug cUu-C-G--- uGaU-G-GGG AUAGAUUAU( UGCAACUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-cGC-AUG (-UCAUCAg- )CGUGC-g-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CgCUCC-U-A CC-GaU--uG AA-UGAUCC- 5641 GGU-GAGG-- CCC-ccGGA- cUgg-gGcg- AcgcAuucg- ---------- ---------- 5701 --------gU UC-Gcc---- ---------- ---------- ---------- --gg-aCg-- 5761 cgAcgc-ucC -gg-aa|gCU gUcc-Aaacc UU-auu-a-u uuag-aggAa gg-agaA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS -Chlorophy 5903 bp RNA RNA 16-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Ch.CCMP621 5903 bp RNA RNA 19-JAN-1999 DEFINITION Chlorarachnion CCMP621. subsp. was Pedinomonas minutissima.. ACCESSION No information KEYWORDS No information. SOURCE Chlorarachnion CCMP621. subsp. was Pedinomonas minutissima. ORGANISM Chlorarachnion CCMP621. REFERENCE 1 (bases 1 to 1902) AUTHORS Gilson,P.R. and McFadden,G.I. TITLE and the smallest known spliceosomal introns The minaturized nuclear genome of a eukaryotic endosymbiont contains genes that overlap, genes that are contranscribed, JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1996) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U58510 LOCUS PMU58510 15074 bp DNA PLN 19-JAN-1999 DEFINITION Chlorarachnion CCMP621 small subunit ribosomal RNA, 5.8S ribosomal RNA, large subunit ribosomal RNA, U6 small nuclear RNA, small subunit ribosomal protein S13 (RPS13), pre-mRNA splicing factor PRP 6 homolog, small subunit ribosomal protein 4 (RPS4), small nucleolar ribonucleoprotein E homolog (snRNPE), ATP-dependent clp protease proteolytic subunit homolog (CLPP), putative RNA polymerase II subunit (RNA POLII), and RNA helicase homolog (RNAHEL) genes, complete cds. ACCESSION U58510 NID g1401204 KEYWORDS . SOURCE Chlorarachnion CCMP621. ORGANISM Chlorarachnion CCMP621 Eukaryota; Chlorarachniophyceae; Chlorarachnion. REFERENCE 1 (bases 1 to 15074) AUTHORS Gilson,P.R. and McFadden,G.I. TITLE The minaturized nuclear genome of a eukaryotic endosymbiont contains genes that overlap, genes that are contranscribed, and the smallest known spliceosomal introns JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1996) In press REFERENCE 2 (bases 1 to 15074) AUTHORS Gilson,P.R. TITLE Direct Submission JOURNAL Submitted (16-MAY-1996) Paul R. Gilson, Botany, University of Melbourne, Parkville, Melbourne, VIC, 3052, Australia FEATURES Location/Qualifiers source 1..15074 /organism="Chlorarachnion CCMP621" /strain="CCMP 621 (Culture Collection of Marine Phytoplankton)" /note="nucleomorph III; subtelomeric; old name: Pedinomonas minutissima" /db_xref="taxon:77303" /cell_type="motile flagellum-bearing cells" rRNA 1..1912 /product="small subunit ribosomal RNA" BASE COUNT 4599 a 2600 c 3098 g 4777 t BASE COUNT 500 a 424 c 544 g 444 t 3991 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~(GGA)UC CU|GCCAGU- A-GUUA-UAU --GCUCGUCU 61 UCAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------gu aaac-----c ---------- ---ac-ugg- uga]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAc-cagu- uau-aauc-- ----uauuug 241 gugg<----- ---------- ---------- ---------- ---------- ---uauggac 301 u>acucgg-a uacccguag( -u-aacu)cu guggc-uaa- uacgug---- ---------- 361 ---------- ---------- ---------- -- -gcuccaauc -aa|auuucu gc|--CCC-A UCAucuugca c-guUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA A-|AGAAA-U GAC|GGGU-A A-CGGG|GAA -U-(UGGC-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCU-G( ---acg--)C 1321 AGGG-A-GGU -|A|GUGACg aaac-au--- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 --------ac ccuaguaua- -gauc(---- ----cgu)ga u--cu-ugua u-agggaau- 1501 ------gcau ----ccaauc -uaaa--ccg u-----ug-g g-uga-ugac c---->gAUU 1561 GGAG|GG-CA A-GA-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC AG-|CUCCAA 1621 U-AGCAUA|U AUUAG--UGU UGUUG-CGG| UUA--aaacg uccguagucg |--------- 1681 ---------- ---------- ---------- ---------- ---------- ---------< 1741 aauuaaaggc ucguaacgcg ucugacgcua ggaguuacug gggugaccau ccccaagggg 1801 uagcu----- ---------- ugug------ ----ua-gc- -------cc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugc--- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 -----ggag- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- auaucgcccc 2341 au-------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---guUACCU UG-AcgA--A 2461 AUUGuGGUGU UC-Au-AG-C AAGua----- ---------- -----cgg-- ---------- 2521 --------ag uacu-c-uag gcacaa-uag cauggaa|UA -ACAacg-CA AGGACUCCGA 2581 C--------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ------ccgg 2821 --auugcgcu -ag-cgcuc- -----gg-ga ucg-ga-gga a--ggauuaa ua--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --CGGGGGCG GU|--CGUAU UCCAUUG-CU -AGAG(GU-G AAA---)UUC G-GUGA-C-C 3061 AAUGG-AGG- A-CGAACA-A CAGC(-GAAA )--GC|A--- UCCGUC-CA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- GUGGACGAAA 3301 GCUAGGGGA- GCGAACACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GGCAC)CG-U GUGUAG|UCC UA--GCC-GU AAACGAUACC GAC|UA|--- 3421 --ggggu-ug gug-g-a-cg uu--(--cuu cucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----agc-u c-ca-uca-g ca-ccuu--- ---------- ----auga(- 3661 gaaa-)uca- caagcu-uuC GGGU|-U|C- CGGGGGGAGU AC--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|GC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CG )CAGG--AAA ACUUACCAGG UC[cgu-aca 4081 uagg-gagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AG-GU- GGU-G-CAUG |GCC|GU-UU CUA|GUUCG- U|GAG(-UUG 4261 A-)CUUGUC- -AGG(UU-AA UU)CCGGUA- AC-GAGCGAG ACCUC-AA|- ---------- 4321 ---------- ---[CUC-CU AGCGAGCuca ---g------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- -------uac 4501 guugaauauc ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --cggug--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- -----uagac uuggguacaa ccaagaucca cgaagggagu 4861 agcuugguga aggcaauccg gguaugggcc aggaccgagc auuacgaaau gagca----- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGGAG]- --|------- ---------- GACG-CUU-G -G-U(----- 5041 --gggaa-)A CCAA-G-GGA GGCA-UGAGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CUU 5221 A-G-A-UGUU CUGG-GCUGC A-CGCGCGCU ACAAU--G-G Ugcga----- ---------- 5281 ---------- -----[gcaa ugagaugagg ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ----gcu-ga acc(gaga-) gguuu----g gcgcgc-cuc gu-aaa]--- ---------- 5461 -------ccg cac-c-c--- ugcc-a-ggg auagaucau( ugcaauug)u ugaucuug-a 5521 acgagg-aau g--ccuagua ag-cac-gag (-ucaucag- )cucgu-g-c -ugaauacg- 5581 u-cccugccc uu|ugua-ca caccgcccgu cgcucc-u-g cc-aa---ug ga-ucggcu- 5641 gga-gaga-- gcg-agaga- ucga------ ----ccaggg ---------- ---------- 5701 -------(ua ac--a-)--- ---------- ---------- ---------- --cc-cuc-- 5761 gc---g-uug uagac-|cuc -ccucgaucc gu-cagua-u cuaa-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS Skel.cos 5903 bp RNA RNA 11-JAN-191 DEFINITION Skeletonema costatum nuclear SSU rRNA. ACCESSION No information KEYWORDS No information. SOURCE Skeletonema costatum nuclear SSU rRNA. ORGANISM Skeletonema costatum nuclear SSU rRNA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M54988 X52006 BASE COUNT 491 a 343 c 456 g 505 t 4108 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagaua---- ---------- -cu-u-uauc gaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CAUU AUAU-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------u cycu---cac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UAUAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ggaucauuc -aa|guuucu gc|--CCU-A UCA--GCUUG G-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGAA|UUG -U-(UAGG-) 1201 GCA-AGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---uuac)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-uug c-agga-gug accggc--c- ac-acacacu g----u-gcg ---------- 1801 ---------- ------u-g- aguugy-g-- -uca---uuc uggcca-uc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cuuggug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --agauc-c- u-guuuggca 2161 (uuaagu--- ---------- ---------- ---)ugucgg gcag------ ---------- 2221 ----gggau- --------aa ccauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUG UG-AAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCU----- ---------- ---------- ---------- 2521 -------UAU -GCCGU-uGA AUAUAU-UAG YAUGGAA|UA -AUAAGA-UA -GGA---CUU 2581 UGAG------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --UC|-UAUU 2821 -UU-GUUGGU -UU-GC---- ------GAG- UCA-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UUCAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCUGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --aggau-ug gcg-g-u-ug uu--(----- uuuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-uca-g ua-cugu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uugaga g-u)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-CG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGAcc ---cgcgaau ag-------c uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------uu auuggcga-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ------ggU- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-Uuc-a -u-u(----- 5041 --cuacaa)g auga-a-ggA AGAU-ggCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGUU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucaa cgagcau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 auaaccu-ug gcc(gaga-) ggccu----g gguaau-cuu guuaac]--- ---------- 5461 -------uug cau-c-g--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AU-CGC-AGU (-UCAUCAA- )ACUGC-A-A -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-UAC CG-AUU---G AA-UGGucc- 5641 ggu-gagg-- agu-cgaga- uugu-ggau- uagc-ucc-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- --gg-ggc-- 5761 uuaucc-gcg -agaa-|ccu -cuccaaacc uu-auc-a-u uuag-AGGAA GG-UGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Volv.car 5903 bp RNA RNA 11-JAN-191 DEFINITION Volvox carteri. ACCESSION No information KEYWORDS No information. SOURCE Volvox carteri. ORGANISM Volvox carteri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X53904 BASE COUNT 443 a 381 c 505 g 459 t 4115 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacug-cuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGG-U AAC|GGGU-G A-CGGA|GGA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -GCGC(---- ----uua)GC GU-CU-GGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUUA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg u-gggg-ugg ugcggu--c- cg-cc--(uc ug)-gu-gug ---------- 1801 ---------- -----ca--- cugcuc-u-- ---gc---uc caccuu-cc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----ugccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggacg--g gcuccugggc 2161 (uucacu--- ---------- ---------- ---)guaugg gacu------ ---------- 2221 ----cggag- --------uc ggcga----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GGUUACUU UG-AGUA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC -GCU-C-UGA AUACAU-UAG CAUGGAA|UA -ACACGA-UA -GGA----cu 2581 cug----g-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --CC|-UAUC 2821 --U-GUUGGU -CU-GU---- -----GGGA- UCG-GA-GUA A--UGAUUAA GA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGG|UAGU ---------- 3001 --CGGGGGCA UU|--CGUAU UCCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGG-AAG- A-CGAACA-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUA ---CUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGGC- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACGAUGCC GAC|UA|--- 3421 --gggau-ug gca-g-a-ug uu--(---cu uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ug-cca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 cggg-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uguggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGG(-UUG 4261 C-)CUUGUC- -AGG(UU-GA UU)CCGGUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUca ---gcau-g- ---------a cug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --cggugc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcaGA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-g -g-c(----- 5041 --guuca-)g ccaa-U-GGA AGUA-UGAGG CGAUAA--Ca GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC a-CGCGCGCU ACACU--G-A CGCGA----- ---------- 5281 ---(------ ----)[ccaa cgagccu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --auccu-ug gcc(gaga-) ggccc----g gguaau-cuu -guaaa]--- ---------- 5461 -------ccg cgu-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAGUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GG-UGUgcu- 5641 ggu-gaag-- ugu-ucgga- uuga-cuuu- gacu-ggg-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -ccu-gg--- 5761 ucaugg-uug -agaa-|guu -cauuaaacc cu-ccc-a-c cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-A-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS +STRAMENOP 5903 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Act.curvat 5903 bp RNA RNA 11-JAN-191 DEFINITION Actinocyclus curvatulus. ACCESSION No information KEYWORDS No information. SOURCE Actinocyclus curvatulus. ORGANISM Actinocyclus curvatulus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85401 BASE COUNT 517 a 322 c 432 g 529 t 4103 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCa-UAC --GCUCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA gu|------- |-------(- ---)[----- 121 ---------- --------aC aaGA-A-Uuu ------u--- ---ac-UCU- AAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-CGGC- UUU-AACU-- ----uAUUUG 241 AUAA<----- ---------- ---------- ---------- ---------- --UUACUUAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -AAAUCAUUC -aU|guUUcc gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U UAC|GGGU-G A-CGGA|GGG -U-(UAGG-) 1201 GCU-UGACC- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---AUA--)C 1321 AGGG-A-GGU -|A|GUGACG AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCUGG- -GGCA(---- ---UUUu)GC -U-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACCAUU -UAAA--UCU C-----AU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CcCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCuggu A-gaag--ua g-ugacCU-u -ggguc---U UUgacc-uaU GAA---guua 1801 cu-aU----- cu-ucAa-cc aUCCUugaag ag-auuu--a guuuggcaUU AAGUuguc-g 1861 aacua--aag a-ua-uuca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCUUUuACuG ug-aAAA--A 2461 AUCAGAacGU UC-AA-AG-U AAGCAU---- ---------- ---------- ---------- 2521 -------U-U AgcU-u-ugA AUGUAU-UAG CAUGGAA|UA -AUGAAa-UA -ggaCuUAGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAcU 2821 -UU-GUUGGU -UU-AU---- ---g----cA CCU-AG-gUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UgGGGGUA UU|--CGUAU UCCAAUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UuUGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCau -UAA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UA|--- 3421 --GGGAU-GG GuG-G-u-U- gugCAAA--- Caac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------a c-cU-uCC-G CA-CCUU--- ---------- ----CCGA(- 3661 GAAA-)UCA- -AAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-uC( --GCAA-)Gu 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCAUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-U)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|gU-UC UUA|GUUGG- U|GGA(-UUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAGCua AuAU------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aaugU -UUGUUcauu guU--Uuu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- AACU-UUU-C -G-U(----- 5041 --g-acua)A CGAA-a-GGA AGUU-AGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-ACGGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CAAG-UA--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UA GCC(gAGAc) GGUu------ GGGUAAUCUU AUAAAU]--- ---------- 5461 -------GUG CGU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU A--UCUAGUA AG-uGC-GCU (-UCAUCAa- )AGCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GAAA-- aCC-UGGGA- uauuagauau --gu-gcu-- ---------- ---------- 5701 -------(gU UU--ua)--- ---------- ---------- ---------- --gG-uau-- 5761 guguuu-ag- ua-gaa|cUC guuu-Aaacc UU-auc-a-u uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Cha.didymu 5903 bp RNA RNA 11-JAN-191 DEFINITION Chaetoceros didymus. ACCESSION No information KEYWORDS No information. SOURCE Chaetoceros didymus. ORGANISM Chaetoceros didymus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85392 BASE COUNT 494 a 340 c 444 g 511 t 4114 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUGA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aC aaAU-C-uuU ------u--- ---ac-UUU- AAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-CAGU- UUU-Aacc-- ----AAACCG 241 AGAG<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGCUCGguC -GG|AAUUcu gC|--CCU-A UCA--GCUUU G-GAAGGUA- 1141 GU(-GUAUUG G)ACU-ACCU U-|GGCUU-U AAC|GGGU-A A-CGGG|G-A -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCAU(---- ---UUAU)UU GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-URG U-G(CCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCuggu A-ggag--gg a-cCgguc-a -gaucA--UU gaucu----- gUacuUGUg- 1801 uc-cU----- cu-ccCg-cc aUCUUugggu gg-aucc--u uucuggcaUU AAGUuguc-g 1861 ggaag--ggg a-ug-ccca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCUUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGACUU---- ---------- ---------- ---------- 2521 ---------A CgucAU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -gggCuUCaG 2581 Ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----UA CcG-AG-gUA A--UGAUUAA cA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UgGGGGUA UU|--CGUAU UcAGuAu-UC -AGUG(GU-G AAA---)UAC U-UAGA-U-c 3061 UACGa-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUAUGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU AU--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --AGGAU-GG GCA-A-g-a- uGCUUUU--- Ggu------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------c u-ug-uCU-G CA-CUGU--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GC-UC( --GCAA-)GG 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AAC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUAUCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-AG|- ---------- 4321 ---------- ---[GCU-gC AAAaUAGGaa CAuC------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----uauaA --UUUu-aua gUu--gAg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uc---- uu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUUGAGC]- --|------- ---------- GACA-UGU-A -G-U(----- 5041 --Uucuaa)G CUAC-a-GGA AGAA-UGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGA-ACCGC A-CGCGUGUU ACACU--G-A CGUAU----- ---------- 5281 ---------- -----[UCAA CGAG-CU--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UG GCC(GAGA-) GGCcU----- GGGCAAUCUU GUUAAC]--- ---------- 5461 -------GUA CGU-C-G--- UGAU-A-GGG AUCGAUUcU( UGCAAUUA)U uAAUCGUG-A 5521 AGCAGG-AAU U--CCUAGUA AA-CGC-AGU (-UCAUCAa- )ACUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-CGUUCC- 5641 GGU-GAAA-- UCU-uGGGa- gugu-gguUU --gUUucc-- ---------- ---------- 5701 -------(UU UA--UU)--- ---------- ---------- ---------- --gg-aUc-- 5761 UU-acc-gua -u-Aaa|caU gCuu-AAacc UU-aac-g-u uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Cha.rostra 5903 bp RNA RNA 11-JAN-191 DEFINITION Chaetoceros rostratus. ACCESSION No information KEYWORDS No information. SOURCE Chaetoceros rostratus. ORGANISM Chaetoceros rostratus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85391 BASE COUNT 489 a 338 c 455 g 513 t 4108 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUGA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAU-C-uuU ------u--- ---ac-UUU- GAA]------ 181 -----|---A CU|G-CARA- UGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAG<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UAACuGUAG( -U-AAUU)CU AGaGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---UCUA)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G -U-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCugru G-ggag--sg a-ucgguc-c -uugCA--UU CUUug--Uag gaAcuUgUr- 1801 uc-cU----- cu-ccGg-cc aUCCUugggu gg-aucu--u gucuggcaUU AAGUuguc-a 1861 ggcag--ggg a-ug-ccca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccAU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -gggCccUGG 2581 Ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----UA CCG-aG-gUA A--UGAUUAA uA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UgGGGGUA UU|--UGUAU UCAGuAu-UC -AGUG(GU-G AAA---)UAC U-UAGA-C-c 3061 UACGG-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUAUGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU AU--ACC-AU AAACUAUACC GAC|UC|--- 3421 --AGGAU-GG GAG-G-g-g- CGUGUUUU-- UGCc------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------c u-cu-uCU-G CA-CUGU--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AAC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUAUCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAAUgg UGUU------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aauga -AUCUucauu ggc--aGA-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ca---- uu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UGU-A -G-U(----- 5041 --aua-aa)A CUAC-a-GGA AGAU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGA-ACCGC A-CGCGUGUU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CGAG-CU--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UG GCC(GAGA-) GGCcU----- GGGCAAUCUU GUUAAC]--- ---------- 5461 -------GUG CGU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAa- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GAAG-- CCU-CGaGA- uugu-gguug g-gu-ucc-- ---------- ---------- 5701 -------(UU UA--UU)--- ---------- ---------- ---------- --gg-agc-- 5761 cugacu-gug -a-gaA|cUU gUcu-Aaacc UU-auc-a-u uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Chaetoc.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Chaetoceros sp.. ACCESSION No information KEYWORDS No information. SOURCE Chaetoceros sp. ORGANISM Chaetoceros sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85390 BASE COUNT 484 a 339 c 454 g 512 t 4114 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAU-C-uuU ------u--- ---ac-UUU- GAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 GUAG<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>AUUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGACCAUUC -aa|guuUcu gC|--CCU-A UCA--GCUUU --GACGGUA- 1141 GU(-GUAUUG G)ACU-ACCG U-|GGCUU-U AAC|GGGU-A A-CGGA|GGA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCC(---- ---UUUC)GG GU-CU-GGCU U-UUGGAAU- 1501 ------GAGA ----GAAUUU -UAGA--AUC C-----AC-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCcggc g-ugag--gg a-ucgguc-u -Gacu---UU UaguG---a- gUacuUg-a- 1801 uc-cU----- cu-caug-cc gUCCUugaau gg-ugca--u -ccuggcaUU AAGUugucgg 1861 ggugA--uaG c-cg-uuca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aGAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UrccGU-urA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -ggaCcUaGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GA---- ---g----aA CCa-AG-gUA A--UGAUcAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UgGGGGUA UU|--CGUAU UCAGuUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UCCGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUAUGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU AU--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --AGGAU-GG GCG-G-g-U- gcaUUU---- Uugc------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------c u-cg-uCU-G CA-CUGU--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUAUCAGG UC[CAG-ACA 4081 UAGU-GAGGA Uu-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-cAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-AG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAAUca CACU------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aauga -CUUUucauu ggu-gAUu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg---- uu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UGU-A -G-U(----- 5041 --aua-aa)A CUAC-a-GGA AGAU-UGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGA-ACCGC A-CGCGUGUU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CGAG-C---- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 -UCACCU-UG GCC(GAGA-) GGCu------ GGGAAAUCUU UUUAGC]--- ---------- 5461 -------AUG CAU-C-G--- UGAU-A-GGG AUUGAUUAU( UGCAAUUA)U UAAUCAUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAa- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AG-UGGUCC- 5641 GGU-GAAG-- aCU-CGGGA- uugu-ggcaa U-cu-Ac--- ---------- ---------- 5701 -------(UU UA--UU)--- ---------- ---------- ---------- --gC-agU-- 5761 uugUcc-acg -a-gaa|cUU gucu-Aaacc UU-auc-a-c uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Cor.crioph 5903 bp RNA RNA 11-JAN-191 DEFINITION Corethron criophilum. ACCESSION No information KEYWORDS No information. SOURCE Corethron criophilum. ORGANISM Corethron criophilum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85400 BASE COUNT 491 a 338 c 455 g 510 t 4109 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCuCGYCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaGC-A-uua ------u--- ---ac-AGU- GAA]------ 181 -----|---A CU|G-UGAA- UGGCU-CAUU AAAU-CAGU- CAU-UAUc-- ----UACAUG 241 AUAA<----- ---------- ---------- ---------- ---------- --UUCC-UAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -AGAUCAuUC -gA|guUUcu gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---AUAC)AG GU-CU-GGCU U-UUGGAAU- 1501 ------GAGA ----GCAAGU -UAAA--UCG A-----UC-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCuggu u-gggc--ug g-UggguC-u --gcuc---U UUgag--uaU gcAccUAUc- 1801 ca-gu----- ---uuga-cc aUCCUuuggg ag-arcc--a uaGuggcAUU AAGUuguu-g 1861 Gugug--gau a-uc-ccaa- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCUUUuacuG ug-aAGA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A CgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUGAcA-UA -ggaCyAUUG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUu 2821 -UU-GUUGGU -UU-GU---- ---g----cG CAA-UA-gUA A--UGAUUAA cA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAgU ---------- 3001 --UgGGGGUA UU|--UGUAU UCCAuUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCUGG-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --GGGAU-CG GUG-G-a-A- uuguAUUACa caa------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-ca-uCG-G CA-CCUU--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-UUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAGucc AGUg------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aauga -UUACucauu Gac---ug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gU---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUU-G -G-U(----- 5041 --g-acua)A CUAA-a-GGA AGUU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGR-UGUC CUGG-GCCGC A-CGCGCGUU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[UCAG AAAG-UA--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UG GCC(GAGA-) GGCcU----- GGGUAAUCUU UUGAAU]--- ---------- 5461 -------GCG CAU-C-G--- UGAU-A-GGG AUCGAUUAU( UGCAAUUA)U UAAUCGUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-ACG (-UCAUCAa- )CGUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GAGG-- CCU-CGGGA- uugu-gguc- UUu--uuc-- ---------- ---------- 5701 -------(UU AA--UU)--- ---------- ---------- ---------- --gg-aa--- 5761 CUgacc-gug -a-gaa|cUU gUcc-AAacc UU-auc-a-u uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Dit.bright 5903 bp RNA RNA 11-JAN-191 DEFINITION Ditylum brightwelli. ACCESSION No information KEYWORDS No information. SOURCE Ditylum brightwelli. ORGANISM Ditylum brightwelli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85386 BASE COUNT 472 a 361 c 474 g 490 t 4106 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAU-A-Uuu ------u--- ---ac-UGU- GAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAG<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|UUG -U-(UAGG-) 1201 GCA-AGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---UUCU)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACGAUU -UAAA--UCC C-----CU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCuggu G-ggag--cg a-uCgguc-u -Gacac---U UUgug--uGa gUacuCGUa- 1801 uu-gU----- cu-ccGg-cc aUCCUugggc gg-aGcc--u gucuggcaUU AAGUuguc-g 1861 ggcag--gGg a-ug-ccca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -ggaCcUCGG 2581 Ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GU---- ---g----UG CCa-AG-gUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UgGGGGUA UU|--CGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UaCGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GuC|UA|--- 3421 --GGGAU-CG GCG-G-u-C- uguC-UUa-- ugAC------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------a c-cg-uCG-G CA-CCUU--- ---------- ----ACGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-CG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAUUgc CGGC------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aauCa -UCUGu-auu gcu-gcug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cg---- au-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-UUS-C -C-C(----- 5041 --c-acaa)G GCGA-A-GGA AGAU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[UCAA CGAG-CU--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UG Gcc(GAAA-) ---cU----- GGGCAAUCUU GUUAAC]--- ---------- 5461 -------GCG CAU-C-G--- UGAU-A-GGG AUAGAUGAU( UGUAAUUA)U UCAUCUUG-A 5521 ACRAGG-AAU U--CCUAGUA AU-CGC-AGA (-UCAUCAa- )UCUGC-A-G -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGMACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GaGG-- aGU-CGaGa- uugu-ggcuU g-gu-ucc-- ---------- ---------- 5701 -------(UU UA--UU)--- ---------- ---------- ---------- --gg-gac-- 5761 uUggcc-gcg -a-aaA|cUU uucc-gaacc UU-auc-a-u uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Euc.antarc 5903 bp RNA RNA 11-JAN-191 DEFINITION Eucampia antarctica. ACCESSION No information KEYWORDS No information. SOURCE Eucampia antarctica. ORGANISM Eucampia antarctica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85389 BASE COUNT 487 a 341 c 457 g 513 t 4105 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaaU-AUuuu ------u--- ---ac-UUU- GAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAA<----- ---------- ---------- ---------- ---------- -UUCCCUUAC 301 U>ACUCGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCuUU --GAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA U-|uGCUA-U AAC|GGGU-A A-CGGA|GGA -U-(CAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-GGCU(U-G AGAAUU)GGC CACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---AUCU)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G -U-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 AAUUUCuggu G-ggag--ug u-acagUc-c -gacac---U GAgug--uug gUUcuUgua- 1801 ug--U----- cu-cuGg-cc aUCCUuggag Ug-aauc--u gucuggcaUU CAGUuguu-g 1861 ggcag--agu a-Uc-ucca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacug uG-aGGA--A 2461 AGgAaAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A CgccGU-ugA AUCUUU-UAG CAUGGAA|UA -AUAAGA-UA -ggaUcUUGA 2581 Ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----UG UCG-AG-aUA A--UGAUGAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UgGGGGUA UU|--UGUAU UCCAUAG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UaUGG-AAG- A-CAAACU-A AUGC(-GAAA )--GC|A--- UCUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCau -UAA-U|CA- A-GAACGAAA 3301 GUGUGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU AC--ACC-AU AAACCAUGCC GAC|UC|--- 3421 --AGGGU-UG ACC-G-g-C- guuaUCA--- ugac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------c u-gg-uCA-G AA-CUGU--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 AAAG-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-U 4141 UUUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCAC-AG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAG-uc CG-G------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----auugu aCUUuacagu cu----Ag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-CCG-A -G-U(----- 5041 --uaccaa)G CUCG-g-GGA AGUU-UGUGG CGAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CGAG-CA--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UG GCC(GAGA-) GGCcU----- GGGCAAUCUU GUUAAC]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGU (-UCAUCAa- )ACUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GAAG-- CCU-CGGGA- uugc-gguuU a-gu-Ucc-- ---------- ---------- 5701 -------(UU UA--UU)--- ---------- ---------- ---------- --gg-Uac-- 5761 uUgacu-gug -a-gaa|cUU gUcu-AAacc UU-auc-a-u uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Lau.boreal 5903 bp RNA RNA 11-JAN-191 DEFINITION Lauderia borealis. ACCESSION No information KEYWORDS No information. SOURCE Lauderia borealis. ORGANISM Lauderia borealis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85399 BASE COUNT 498 a 350 c 445 g 514 t 4096 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAU-C-Cuu ------u--- ---ac-UUU- AAA]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-CAGU- UAU-AAUU-- ----UGUUUG 241 AUAA<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUG -aa|guUUcu gC|--CCU-A UUA--ACUCC G-GACGGUA- 1141 uG(-GUAUUG G)CuU-ACCG U-|GGUCG-U AAU|GGGU-A A-CGAA|AAG -U-(UAGG-) 1201 GCU-UGAUU- UCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUACU-G( ---ACA--)C 1321 AGUG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGGCGG- -GUCU(---- ---CUAG)AG AU-CU-GCCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CAA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G -U-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG cUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 AAAUACugau u-uagu--cg a-ccgguc-- --ccgugCUU UGUcg--cgg gCacUcgUg- 1801 uc-ga----- Gc-uaga-uc aUUCUugguG Au-aacc--g aucuggcaUU AGGUuguu-g 1861 gauuuuuggu g-aagacca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGACUU---- ---------- ---------- ---------- 2521 ---------A UgucGU-ugA AUACAU-UAG CAUGGAA|UA -AUAAuA-UA -ggaCuUUUG 2581 Ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUu 2821 -UU-GUUGGU -UA-G----- ---g----UG UGA-AA-gUA A-CUGAUcAA cA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CgGGCAUA UU|--UGUAU UUCGuUG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCCGA-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UCUAUG-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAu -UaA-U|CA- A-GAgCGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --GGGAU-UG GaC-G-U-U- guuUUU---- Ugac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U c-gC-cCA-G CA-CCGU--- ---------- ----GUGG(- 3661 GAAA-)CCAU -UAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GA 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[CAG-ACA 4081 UAAU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-U 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|gU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-CG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAGUuc gaUG------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aauca -UUCUugauu caA--GAg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACg-UCC-A -U-U(----- 5041 --cuacaa)G AUGG-a-gGA AGAU-GGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CGAG-UA--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 ACAACCU-UG ACC(GAGA-) GGCcC----- GGGUAAUCUU UUUAAU]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGUAAUUA)U UAAUCUUA-A 5521 ACGAGG-AAU U--UCUAGUA AA-CGU-AUA (-UCAUCAg- )UAUAC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AG-CGGUCC- 5641 GAU-aAAG-- gCU-CGGGA- aarg-uCcUC g-uu-ucc-- ---------- ---------- 5701 -------(UU CA--CU)--- ---------- ---------- ---------- --gg-aga-- 5761 cUUgAa-uuu -u-gaa|cCU gucu-AAauc UU-auc-g-c uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Mel.varian 5903 bp RNA RNA 11-JAN-191 DEFINITION Melosira varians. ACCESSION No information KEYWORDS No information. SOURCE Melosira varians. ORGANISM Melosira varians. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85402 BASE COUNT 513 a 313 c 429 g 524 t 4124 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC cU|GCCAGU- A-GCGA-UAC --GCuCGUaU 61 UAAA|-GAUU AA-GCCAUGC A-UGUGU-CA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAAC----u ------uuu- ------guU- GAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAA-CAGU- UAU-AGUU-- ----UAUUUG 241 ACGU<----- ---------- ---------- ---------- ---------- ---UCUUUAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -AAGUCAUau -aa|guUUcu gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUU G)CCU-ACCA U-|GGCAC-U CAC|GGGU-A A-CGGG|AGA -U-(UAGG-) 1201 GUU-UGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-A( ---AUA--)C 1321 AGGG-A-GGU -|A|GUAACG AUGA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGUCGG- -GCCU(---- ---UUUC)AG GU-CU-GACA a-UUGGAAU- 1501 ------GAGA ----ACGAUG -UAAA--CAU C-----CU-A U-CAA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUa-CaG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 AAUUUU-agg u-ugUa-ugg c-uuAuucC- -cac---(AU U)---g-ug- --Aga--aAg 1801 -a-gu---cg ---uUua-gc cu-------- UUAaugauua augauaaaau agcaUUAAUU 1861 uguuguuuug u-uaggaauc a--------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- uCUUUuacuG ug-aAGA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCAU---- ---------- ---------- ---------- 2521 ---------- UgcuG--ugA AUACAU-UAG CAUGGAA|UA -AUGAAA-UA -ggaCuCAGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -CU-AA---- ---g---acC CaU-GA-gUA A--UGAUUAa cA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGU ---------- 3001 --UgGGGGUA UU|--UGUAU UCCAGUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UcUGG-AAG- A-CAAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAC -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC aAC|UA|--- 3421 --GGGAU-CA UCA-G-u-U- guu-aUUUA- ugac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------a c-ug-gUG-G CA-CCUU--- ---------- ----AUGA(- 3661 GAGA-)UCA- -AAGUc-UUU GGGU|-U|C- uGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAa--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGA---AA ACUUACCAGG UC[CAG-ACA 4081 UAGU-AAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|gU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAGUua cACu------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aaugU ---UUu-auu UGU--guu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUC-A -G-U(----- 5041 --g-acua)A CUGA-a-GGA AGAU-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A uGCAU----- ---------- 5281 ---------- -----[UCAA UAAG-UC--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 UU--CCU-UG GCC(GAGA-) GGCuUa---- GGGUAAACUU UU-AAU]--- ---------- 5461 -------AUG UuU-C-G--- UGAU-A-GGG AUUGAAUcU( UGUAAUUA)U uAUUCAUG-A 5521 ACGAGG-AAU U--CCUAGUA AC-CGC-AGA (-UCAUUAa- )UCUGC-A-G -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGAUCC- 5641 GGU-GAGG-- aCU-gGaGA- uuaA-ggcAA U-cu-uuc-- ---------- ---------- 5701 -------(UU CA--CU)--- ---------- ---------- ---------- --gg-aag-- 5761 UGCgcc-Aug -a-gaA|cuU gucc-AAauc UU-auc-a-u uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Pap.elegan 5903 bp RNA RNA 11-JAN-191 DEFINITION Papiliocellulus elegans. ACCESSION No information KEYWORDS No information. SOURCE Papiliocellulus elegans. ORGANISM Papiliocellulus elegans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85388 BASE COUNT 475 a 361 c 474 g 489 t 4104 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GcuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-CGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAU-A-Cuu ------u--- ---ac-UUU- GAA]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAG<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCuUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGA|UAA -U-(UAGG-) 1201 GUU-AGAUU- CCG|GAGAGG G-GGCC(U-G AGAGAU)GGC CACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---UUCU)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCuggu G-ggag--Cg a-ccgguc-c -ggc-c---U UAgcg--cgg GUacuUgCg- 1801 us--U----- cu-ccGg-cc aUCCUugggg ag-aGuu--u gucuggcaUU AAGUuguc-g 1861 ggcag--aGg a-uc-cuca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -ggaCuUUGG 2581 UA-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----cA CCA-AA-gUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUA UU|--CGUAU UCCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UaCGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCau -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --GGGAU-UG GCG-G-a-C- guuCGUUU-- Ugac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cg-uCA-G CA-CCGU--- ---------- ----AUGU(- 3661 GAAA-)ACA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|gU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-UG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAGUuc CGCg------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----agucu -CUUUagacu Ggc--gAg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-UGG-G -U-U(----- 5041 --auu-aa)A AUCC-a-GGA AGAU-AGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CGAG-CU--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UG GCC(GAGA-) GGCcU----- GGGCAAUCUU GUUAAC]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGAAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-AGA (-UCAUCAA- )UCUGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG GA-UGGUCC- 5641 GGU-GAAG-- CCU-CGGGA- uugu-gguug u-gc-ugc-- ---------- ---------- 5701 -------(UU UA--UU)--- ---------- ---------- ---------- --gu-ggu-- 5761 gcgacc-gcg -a-gaa|cUU gUcu-AAacc UU-auc-a-u cuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Por.glacia 5903 bp RNA RNA 11-JAN-191 DEFINITION Porosira glacialis. ACCESSION No information KEYWORDS No information. SOURCE Porosira glacialis. ORGANISM Porosira glacialis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85398 BASE COUNT 505 a 332 c 438 g 523 t 4105 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAU-A-Uuu ------u--- ---ac-UUU- AAA]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-CAGU- UAU-AAUU-- ----UAUUUG 241 AUAA<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UUA--ACUUC G-GACGGUA- 1141 uG(-GUAUUG G)CuU-ACCG U-|GGUCA-U AAU|GGGU-A A-CGAA|UAG -U-(UAGG-) 1201 GCU-AGAUU- UCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUACU-G( ---ACA--)C 1321 AGUG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGGUGG- -GUUU(---- ---UUAC)AA AU-CU-GCCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G -U-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 AAAUACugac a-uagu--cg a-ccgguc-- ucacgC--AU UGUcg--ugr rCacUugUg- 1801 uu-gU----- au-uagg-uc aUUCUugGAu uuuagcc--a gucuggcaUU AAGUuguc-g 1861 gguu---ggu g-aa-aaca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGACUU---- ---------- ---------- ---------- 2521 ---------A UgucGU-ugA AUAGAU-UAG CAUGGAA|UA -AUAAuA-UA -ggaCuUUUG 2581 Ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUu 2821 -UU-GUUGGU -UA-G----- ---g----UG UAA-AA-gUA A--UGAUcAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGCGUA UU|--CGUAU UUCGuUG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCCGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACG-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCau -UaA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --GGGAU-UG GGC-G-U-U- guuUUU---- Ugac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U c-gu-cCA-G CA-CCGU--- ---------- ----AUGG(- 3661 GAAA-)CCAU -UAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GA 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUgGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAAU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-U 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|gU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-CG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAGUuc CGUg------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aauca -UUUUugauu Gau--gAg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACg-UCC-A -U-U(----- 5041 --cuacaa)G AUGG-a-gGA AGAU-GGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAU----- ---------- 5281 ---------- -----[UCAA CGAG-UC--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AAAACCU-UG GCC(GAGA-) GGCcU----- GGGUAAUCUU UUUAAU]--- ---------- 5461 -------GUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGU-AUA (-UCAUCAG- )UAUAC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-CGGUCC- 5641 GAU-GAAC-- ACC-CGAGC- gcgg-AcuuU -guu-ucc-- ---------- ---------- 5701 -------(UU CA--UU)--- ---------- ---------- ---------- --gg-aga-- 5761 uUaagA-ccg -u--aa|cC- gugu-Aaauc UU-auc-g-g uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Str.thames 5903 bp RNA RNA 11-JAN-191 DEFINITION Streptotheca thamesis. ACCESSION No information KEYWORDS No information. SOURCE Streptotheca thamesis. ORGANISM Streptotheca thamesis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85385 BASE COUNT 473 a 365 c 478 g 486 t 4101 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaAU-A-Uuu ------u--- ---ac-UGU- GAA]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAG<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GG(-GUAUUG G)CCU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGGG|UUG -U-(UAGG-) 1201 GCA-AGACU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---UUCU)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACGAUU -UAAA--UCC C-----CU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCuggu G-ggag--cg a-ucggUC-C -gacGC---U AU-----GGg guACucgUa- 1801 uu-gU----- cu-ccGg-cc aUCCUugggu gg-aGcu--u gucuggcaUU AAGUuguc-g 1861 ggcag--gGg a-ug-ccca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -ggaCcUcGG 2581 Ua-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GU---- ---g----UG CCa-AG-gUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UgGGGGUA UU|--CGUAU UCAGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UaCGG-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCau -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GuC|UA|--- 3421 --GGGAU-CG GCG-G-u-C- gCuC-UUA-- UgAc------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------a c-cg-uCG-G CA-CCUU--- ---------- ----ACGA(- 3661 GAAA-)UCA- -AAGuC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAAU-GAGGA UU-----GAC AGA(UUGAGA G-C)------ UCUUU----- CUU-GAUU-U 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|gU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCCC-UG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAUCgc CGGa------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aauca -CUUUugauu Acu-gCUg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cg---- au-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UCU-G -C-C(----- 5041 --cuacaa)G GCGG-a-GGA AGAC-GGGGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCGU----- ---------- 5281 ---------- -----[UCAA CGAG-CA--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UG GCC(GAAA-) GGCcU----- GGGCAAUCUU GUUAAC]--- ---------- 5461 -------GCG CAU-C-G--- UGAU-A-GGG AUAGAUGcU( UGAAAUUA)U uCAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AU-CGC-AGA (-UCAUCAa- )UCUGC-A-G -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GaGG-- aCU-CGGGa- uugu-ggcuU g-gu-ucc-- ---------- ---------- 5701 -------(UU CA--UU)--- ---------- ---------- ---------- --gg-gac-- 5761 uUggcu-gug -a-Aaa|cUU gucc-gaacc UU-auc-a-u uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS Tha.rotula 5903 bp RNA RNA 11-JAN-191 DEFINITION Thalassiosira rotula. ACCESSION No information KEYWORDS No information. SOURCE Thalassiosira rotula. ORGANISM Thalassiosira rotula. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X85397 LOCUS Thalrotu 1870 BP DEFINITION Thalassiosira rotula 18S rRNA p106 CCAP 1085/4 ORIGIN BASE COUNT 479 a 352 c 460 g 509 t 4103 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAC --GCuCGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------aU aaCU-C-uuU ------u--- ---acUUUG- AAA]------ 181 -----|---A CU|G-CGAA- CGGCU-CAUU AUAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAG<----- ---------- ---------- ---------- ---------- --UCCCUUAC 301 U>ACUUGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- ---------- ---------- -- -GGAUCAUUC -aa|guUUcu gC|--CCU-A UCA--GCUUU G-GAUGGUA- 1141 GU(-GUAUUG G)ACU-ACCA U-|GGCUU-U AAC|GGGU-A A-CGAA|UUG -U-(UAGG-) 1201 GCA-AGAUU- UCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---ACA--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUGCCGG- -GCCU(---- ---UUAC)AG GU-CU-GGCA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGYC|GC-G GU-AA)uUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 GAUUUCuAgc a-ggag--ug a-ccgguc-- aCGcaC---U CugGA----u gCacUugUg- 1801 uu-gU----- cu-cugg-cC aUCCuugggg ag-aucc--u guuuggcaUU AAGUuruc-g 1861 ggcag--ggg a-ua-ccca- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- UCGUUuacuG ug-aAAA--A 2461 AUUAGAGUGU UU-AA-AG-C AGGCUU---- ---------- ---------- ---------- 2521 ---------A UgccGU-ugA AUAUAU-UAG CAUGGAA|UA -AUAAGA-UA -ggaCuUCGG 2581 Aa-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-GC---- ---g----UU ACG-AA-gUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UgGGGGUA UU|--CGUAU UUCGuUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UCCGA-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCau -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --GGGAU-CG GAG-G-U-U- guuUUU---- Ugac------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------U c-cu-uCG-G CA-CCGU--- ---------- ----AUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)CG 3721 GUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AAC-UGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[CAG-ACA 4081 UAGU-GAGGA UU-----GAC AGA(UUGAGA G-U)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|uG-GU- GGU-G-CAUG |GCC|gU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-CG|- ---------- 4321 ---------- ---[CCU-gC UAAaUAGUuc UACU------ ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- -----aaucg -UUUUugauu ggu-UAag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ag---- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACg-UUC-A -U-U(----- 5041 --cuacaa)G AUGA-a-gGA AGAU-GGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-UGA-UGUC CUGG-GCCGC A-CGCGCGUU ACACU--G-A UGCAc----- ---------- 5281 ---------- -----[UCAA CGAG-CA--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------U 5401 AUAACCU-UG GCC(GAGA-) GGCcU----- GGGUAAUCUU GUUAAC]--- ---------- 5461 -------uUG CAU-C-G--- UGAU-A-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AU-CGC-GGU (-UCAUCAa- )ACCGC-A-A -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCACC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GaGG-- aCU-CGGGA- uugu-ggCuU g-gc-ucc-- ---------- ---------- 5701 -------(UU CA--UU)--- ---------- ---------- ---------- --gg-ggc-- 5761 cUgAcc-gcg -a-gaa|cUU gucc-gaacc UU-auc-a-u uuag-aggAa gg-ugAA-G- 5821 UCGUAACAAG Gu-------- -----u-u-c Cguagg(UGA A)ccugcAga agGAUCAA-- 5881 ---------- -------~|| ||| // LOCUS +CRYPTOPHY 5903 bp RNA RNA 17-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS Cry.neo.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X57008 LOCUS CRY18SNM 2039 bp ds-DNA PLN 18-JUN-1991 DEFINITION Cryptomonas PHI small subunit rRNA gene (nucleomorph) ACCESSION X57008 KEYWORDS 18S ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. SOURCE Cryptomonas phi DNA. ORGANISM Cryptomonas phi Fungi; Chromophycota; Cryptophyceae; Cryptomonadales; Cryptomonadaceae. REFERENCE 1 (bases 1 to 2039) AUTHORS Douglas,S.E. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (bases 1 to 2039) AUTHORS Gray,M.W. JOURNAL Unpublished (1991) STANDARD full automatic REFERENCE 3 (bases 1 to 2039) AUTHORS Douglas,S.E., Murphy,C.A., Spencer,D.F. and Gray,M.W. TITLE Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes JOURNAL Nature 350, 148-151 (1991) STANDARD full automatic COMMENT *source: clone=PCR product of nucleomoprph-enriched DNA; From EMBL 27 entry CP18SNM; dated 29-MAY-1991. FEATURES Location/Qualifiers rRNA 1..2039 /product="small subunit ribosomal RNA (nucleomorphic)" BASE COUNT 511 a 437 c 560 g 531 t ORIGIN BASE COUNT 511 a 437 c 560 g 531 t 3864 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAG|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |-------(- ---)[----- 121 ---------- --------ac aaacaagauu ---------- -gu-a-ccgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAAU ACAA-cagu- uau-aguu-- ----uauuug 241 aucg<----- ---------- ---------- ---------- ---------u gcgg---ggc 301 u>ACGUGG-A UAACCGUAG( -G-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUU- 1141 GG(-GUAGUG G)CCA-ACCA U-|GGUGU-U GAC|GGGU-- A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GA- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 AGGG-A-GGU -|A|GCGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGGUAGU-G- -ACUC(---- ---guuc)GA GU-CU-GCUC A-UCGGAAU- 1501 ------GAGG ----AUAGUU -UACA--CCC C-----UU-C U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauugg-auc a-uaga-gag gagagu--c- gc-gc----- -----g-cac ---------- 1801 ---------- ------u-c- ccucug-g-- -uugagugga ----cg-cgc gc-------- 1861 gcu------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------c uuucugugau 2161 caaccuu--- ---------- ---------- ---ucuggga gggu------ ---------- 2221 ----cucuga agaggaugcc ucuguauuca gaccccucuu ggaugua--- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AACA--A 2461 AAUAGAGUGU UC-AU-GG-C AGGCCUuuu- -------g-- ---------- -aauu----- 2521 ---------A GGCU-U--AG AUACCA-UAG CAUGGAA|UA -AUAGAA-UA -GGA---cuu 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -UU-GUUGGU -UU-UU---- -----GGAG- CCG--AGGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA CC|--CGUAC UCCGUUG-UC -AGAG(GU-G AAA---)UUC A-UGGA-U-U 3061 AACGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC AAC|UG|--- 3421 --gggau-ug gua-g-a-ag ua--(---cc aaauaaac-) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ua-uca-g ca-cccu--- ---------- ----aaGA(- 3661 GAAA-)UCA- -AAGUc-uuu aGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUUACCAGG UC[CGG-ACA 4081 UAGG-GAGGA UU-----GAC AGA(uugaga g-c)------ UCUUU----- CUU-GAUU-C 4141 UAUGGG---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(CU-AA UU)CCGUUA- AC-GAGCGAG ACCUU-GA|- ---------- 4321 ------(--- --)[CCU-GC UAAUUAGCcc c--gucggug ---------g caa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------c gccuucgu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gauGG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-Auc-c -g-c(----- 5041 -guuauua)g ugga-U-GGA GGAA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACAAU--G-G UGCAG----- ---------- 5281 ---(------ ----)[acaa ugagugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ugcuccu-gg ucc(gaaa-) ggauu----g gggaau-cuu -ggaaa]--- ---------- 5461 -------CUG CAU-C-G--- UGAU-A-GGG AUAGAUGAU( UGCAAUUU)U UCAUCUUG-A 5521 ACGAGG-AAU G--CCUUGUA AG-CGC-GAG (-UCAUCAA- )CUCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGGccc- 5641 ggu-gaaa-- ugc-ucgga- cgag-uguu- caga-gccgc cac------- ---------- 5701 -------(ga uc----)--- ---------- ---------- ---------- -gug-gcg-- 5761 cucuuc-cuc -ggaa-|gug -cagugagcc uu-guc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --G~~~~~~~ ~~~~~~~~|| ||| // LOCUS Cry.phi.gb 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X57162 LOCUS CRYHIRRNA 1773 bp ds-DNA PLN 18-JUN-1991 DEFINITION Cryptomonas PHI rRNA gene ACCESSION X57162 KEYWORDS ribosomal RNA; ribosomal RNA gene. SOURCE Cryptomonas phi DNA. ORGANISM Cryptomonas phi Fungi; Chromophycota; Cryptophyceae; Cryptomonadales; Cryptomonadaceae. REFERENCE 1 (bases 1 to 1773) AUTHORS Gray,M.W. JOURNAL Unpublished (1991) STANDARD full automatic REFERENCE 2 (bases 1 to 1773) AUTHORS Douglas,S.E., Murphy,C.A., Spencer,D.F. and Gray,M.W. TITLE Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes JOURNAL Nature 350, 148-151 (1991) STANDARD full automatic COMMENT From EMBL 27 entry CPHIRRNA; dated 08-MAY-1991. FEATURES Location/Qualifiers rRNA 1..1773 BASE COUNT 474 a 350 c 476 g 473 t ORIGIN BASE COUNT 474 a 350 c 476 g 473 t 4130 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-UA GU|------- |-------(- ---)[----- 121 ---------- --------gu aaaaua---a ---------- -cu-c-uauu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u uccu---uac 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCC-(---- ---aac-)-G GU-CU-UGUU A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaaguc-ggg c-ucgg-gca ggc------- ---------u gu---c-ggc ---------- 1801 ---------- ------c-u- cgguug-g-- -gca-gcuug cuu--g-ggu cu-------- 1861 ucu------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ------a-gc ucgggggccc 2161 cgugcca--- ---------- ---------- ---uuuaacc gugg------ ---------- 2221 ----ugcgcg ggaacacggg cc-------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCCU---- ---------- ---------- ---------- 2521 ---------A CGCU-U--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGA---cuu 2581 -ugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uGC|-UAUU 2821 -UC-GUUGGU -UA-AU---- -----GGGA- CCG--AAGUA A--UGAUUAA AA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGCCG UU|--UAUAU UUCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGA-AAG- A-UAAACU-U CUGC(-GAAA )--GC|A--- UUCGGC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ca gug-g-a-ug uc--(---aa u-uugc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-ca-uug-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUu-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaaa g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAACUAGCau c--gcgaau- ---------a uug------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --auuggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaggG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-u -g-u(----- 5041 --guuua-)a ugaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAC----- ---------- 5281 ---(------ ----)[gcaa cgagcuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -gacccu-ga acc(gaaa-) ggccu----g gguaaa-cuu gugaaa]--- ---------- 5461 -------guu cau-c-g--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCc- 5641 ggu-gaaa-- ucu-ucgga- uugc-uggc- cauu-ugcc- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- -ggu-ga--- 5761 gugguu-gcg -agaa-|guu -gauugaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --U--~~~~~ ~~~~~~~~|| ||| // LOCUS G.truncata 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03072 LOCUS GONIO 1944 bp rRNA UNA 21-NOV-1993 DEFINITION Goniomonas truncata 18S ribosomal RNA. ACCESSION U03072 KEYWORDS . SOURCE Goniomonas ORGANISM Goniomonas truncata Protista; Cryptophyta; Cryptomonadaceae; Cryptomonadales; Goniomonadaceae. REFERENCE 1 (bases 1 to 1944) AUTHORS McFadden,G.I., Gilson,P.R. and Hill,D.R.A. TITLE Goniomonas: rRNA sequences indicate that this phagotrophic flagellate is a close relative of the host component of cryptomonads JOURNAL European Journal of Phycology 29 (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1944) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) Geoffrey I. McFadden, Botany, University of Melbourne, Parkville, VIC, 3052, Australia STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1944 /product="18S rRNA" /standard_name="small subunit rRNA" source 1..1944 /clone="pF45,pF46,pF47" /organism="Goniomonas truncata" BASE COUNT 499 a 394 c 520 g 531 t ORIGIN BASE COUNT 499 a 394 c 520 g 531 t 3959 others ORIGIN 1 |--------- ----nnnnnn nnn(nnn)nn nn|nnnnnU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------gu aaauaagucu ---------- -acac-cgu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 augu<----- ---------- ---------- ---------- ---------- --uuccuuac 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-G A-CGGG|GGA -U-(UAGG-) 1201 GUC-UUAUC- CCG|GAGAGU A-UGCC(U-G AGAGAC)GGC AAAC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-A( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------ac caaugcaga- -gccc(---- ----acu)gg gu-uu-ugca a-uuggaau- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A A-CGA-GGAU C---->CAUU 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gacuuu-ugg g-aaaa-uua aaagga--ug gu-gaauuaa aaguug-uug ---------- 1801 ---------- -----gg-c- guuuaa-acg -cguccgaug accgcu-auc ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----cccca 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ucauuua-ug ugggaggggg 2161 -ucauuc--- ---------- ---------- --guuggguc ugga------ ---------- 2221 ---gguuguc uggcuuuguc gcaaggcagg gucggguggc aauaccguca uggguggcca 2281 uuccaaacuc ucucacu--- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACCU UG-AGCA--A 2461 AUUAGAGUGU UC-AA-AG-C GGGCU----- ---------- ---------- ---------- 2521 ----UGUUAC GCU----UGA AUAGUC-UAG CAUGGAA|UA -AUGGAA-UA -GGACuCGAG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-uguu 2821 --c-guuggu -uu-uuu--- -----gg-ga UUU-GA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UGGU ---------- 3001 --UGGGGCCG UU|--UGUAU UCCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGG-AAG- A-CAAACA-U CUGC(-GAAA )--GC|A--- UUCGGC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACA ---UGCUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --gggau-cc gcg-c-g-cg uuga(---uu uuaucaaac- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c g-ug-ugg-g ca-ccgu--- ---------- ----guGG(- 3661 GAAA-)CCa- uucaguguuu gGGC|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA UCUCACCAGG UC[cag-aca 4081 uuuu-cagga ag-----auc aga(uugaaa g-c)------ ucuua----- uuu-gauu-a 4141 gauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAGUagggg g--cguggcu auuuuggccg gcgc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -ucaaaa--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uuuac- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-u -g-u(----- 5041 --guuua-)A CGAA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-CGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGAGU----- ---------- 5281 ---------- -----[ccaa caagcauaag uuuuauuuuc ucaaggguca gcaaugaucu 5341 -gggggcaac cucucgcuuu cauuucucgc cucggcgggg guggaaguug cuugggagaa 5401 gaguccu-gg ucc(gaaa-) ggucu----g gggaaa-cuu gcaaga]--- ---------- 5461 -------cuc ugu-c-g--- UGAU-G-GGG CUAGCUCCU( UGUAAUUA)U GGAGCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGcucc-u-a cc-gau--ug aa-uggucc- 5641 ggu-gaaa-- ucu-ucgga- uugu-cgau- uguagugg-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- cugc-ugc-- 5761 aaaauc-gcg -aaaa-|guu -gauuaaacc uu-auc-a-u uuag-aggaa gg-agaa-G- 5821 UCGUAACAAG GU-------- -----U-U-C Cnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn----- -------~|| ||| // LOCUS P.sal.nc.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X55032 LOCUS PYAALN16S 1881 bp ss-mRNA PLN 24-JAN-1992 DEFINITION Pyrenomonas salina nucleomorph 18S ribosomal RNA ACCESSION X55032 KEYWORDS 16S ribosomal RNA. SOURCE Pyrenomonas salina RNA. ORGANISM Pyrenomonas salina Eukaryota; Chromophycota; Cryptophyceae; Cryptomonadales; Cryptomonadaceae. REFERENCE 1 (bases 1 to 1881) AUTHORS Maier,U.G., Hofmann,C.J., Eschbach,S., Wolters,J. and Igloi,G.L. TITLE Demonstration of nucleomorph-encoded eukaryotic small subunit ribosomal RNA in cryptomonads JOURNAL Mol. Gen. Genet. 230, 155-160 (1991) STANDARD full automatic COMMENT From EMBL entry PSALN16S; dated 17-DEC-1991. FEATURES Location/Qualifiers rRNA <1..>1881 /product="16S rRNA" BASE COUNT 496 a 389 c 507 g 488 t 1 others ORIGIN BASE COUNT 496 a 389 c 507 g 488 t 4023 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAG|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |-------(- ---)[----- 121 ---------- --------ac gaacgauuuu ---------- -gu-a-ccgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 auca<----- ---------- ---------- ---------- ---------u gcgg---cgc 301 u>ACGUGG-A UAACCGUAG( ---AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA U-|GGUGU-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GCGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGACGG- -GCUC(---- ---guuc)GA GU-CU-GUUC A-UUGGAAU- 1501 ------GAGG ----AUAACU -UACA--CCC C-----UU-C U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauucagacc c-gugu-gcg cggauc--g- gc-uu----- -----a-uca ---------- 1801 ---------- ------u-g- gcccuu-g-- -cggcgccgg ucua------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- cuuuugucgu 2161 ugcgaag--- ---------- ---------- ---ucugcuc uuuu------ ---------- 2221 ---guggagg agacucguga agcgacauu- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AACA--A 2461 AAUAGAGUGU UC-AU-GG-C AGGCCuuua- -------g-- ---------- -ca------- 2521 ---------A GGCU-U--AA AUACCU-CAG CAUGGAA|UA -AUAGAA-UA -GGA---cuu 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-UU---- -----AGAG- CCG--AAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA CU|--CGUAC UCCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- UCGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --gggau-ug gua-g-a-ug ua--(---cc aaaaac---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ua-uca-g ca-cccu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUc-uau gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-GU|-GG 4021 A-CCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUUACCAGG UC[cgg-aca 4081 uagg-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUcc c--uuuggcg ---------g ca-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- cgccgaag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----agaGG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-auc-c -g-c(----- 5041 --gguca-)g cgga-U-GGA AGGA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACAAU--G-A UGCAA----- ---------- 5281 ---(------ ----)[ccaa cgagugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ugcuccu-ug acc(gaaa-) ggucu----g gggaau-cuu -cgaag]--- ---------- 5461 -------CUG CAU-C-G--- UGCU-A-GGG AUAGAUGAU( UGCAAUUA)U UCAUCUUG-A 5521 ACGAGG-AAU G--CCUUGUA AG-CGU-GAG (-UCAUUAA- )CUCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-Uggucc- 5641 ggu-gaaa-- uga-ucgga- uuga-aagg- ucua-gugc- ---------- ---------- 5701 -------(gc ac----)--- ---------- ---------- ---------g cacu-gga-- 5761 guucgu-uua -agaa-|guu -cauugagcc uu-auc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 -UUA~~~~~~ ~~~~~~|~|| ||| // LOCUS P.sal.nc.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X54276 ID PSA16S standard; RNA; PLN; 1762 BP. XX AC X54276; XX DT 24-APR-1991 (Rel. 28, Last updated, Version 2) DT 24-APR-1991 (Rel. 28, Created) XX DE Pyrenomonas salina cytoplasmic 17S rRNA XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Pyrenomonas salina OC Eukaryota; Plantae; Thallobionta; Chromophycota; Cryptophyceae; OC Cryptomonadales; Cryptomonadaceae. XX RN [1] RP 1-1762 RA Wolters J.; RT ; RL Submitted (09-MAY-1990) on tape to the EMBL Data Library by: RL Wolters J.; Institut fuer Allgemeine Mikrobiologie der RL Universitaet, Biologiezentrum, Am Botanischen Garten 1-9, 2800 Kiel RL 1. XX RN [2] RP 1-1762 RA Eschbach S., Wolters J., Sitte P.; RT "Primary and secondary structure of the nuclear small subunit RT ribosomal RNA of the cryptomonad Pyrenomonas salina as interferred RT from the gene sequence: evolutionary implications"; RL J. Mol. Evol. 32:247-252(1991). XX FH Key Location/Qualifiers FH FT rRNA 1..1762 FT /note="17S rRNA" XX SQ Sequence 1762 BP; 470 A; 336 C; 453 G; 503 T; 0 other; BASE COUNT 470 a 336 c 453 g 503 t 4141 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-UA GU|------- |-------(- ---)[----- 121 ---------- --------gu aaauaa---- ---------- --u-g-uuau gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u cccu---uac 301 u>ACAUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-G GaCGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGCAC- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCG-A( ---cuu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCU-(---- ---uac-)-A GU-CU-UGUU A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCU C-----UU-U A-CGA-GGAU C---->AAUU 1561 AGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCUAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucucgggc u-cggg-gag gcuguc--g- gc-uucgguc ggacgg-cau ---------- 1801 ---------- ------g-u- ccgggc-c-- -uuucugccu ggggau-ccu ac-------- 1861 ucuacuuaac u-guagggua gugggacgca ggcc------ ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --GUUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGGCCu---- ---------- ---------- ---------- 2521 ---------A CGCU-U--GA AUACAU-UAG CAUGGAA|UA -AUGGAA-UA -GGA---cu- 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uc|-UUAU 2821 -UU-GUUGGU -UU-AU---- ------GGA- CCG--AAGUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGCCG UU|--UAUAU UUCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGA-AAG- A-UAAACU-U CUGC(-GAAA )--GC|A--- UUCGGC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ca gug-g-a-ug uc--(---aa uuugc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-uug-g ca-ccuu--- ---------- ----guGA(- 3661 GAAA-)UCa- -aAGUu-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaaa g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-AG|- ---------- 4321 ------(--- --)[CCU-CG UAACUAGUga c--gcauauc ---------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- gauaugug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gcccA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-u -g-u(----- 5041 --guuua-)a ugaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[gcaa cgagcuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cucccu--ua uuc(gaaa-) gaauc----g gguaaa-cuu gugaaa]--- ---------- 5461 -------AUU CAU-C-G--- UGAU-G-GGG AUAGAUUAU( UGCAAUUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGucc- 5641 ggu-gaaa-- ucu-ucgga- uugc-agac- uuug-gca-- ---------- ---------- 5701 -------(uu ua--uu)--- ---------- ---------- ---------- ---u-guc-- 5761 uuaguu-gcg -agaa-|guu -gauugaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS P.salin.nm 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS LOCUS PYAALN16S 1881 bp ss-mRNA PLN 24-JAN-1992 DEFINITION Pyrenomonas salina nucleomorph 18S ribosomal RNA ACCESSION X55032 KEYWORDS 16S ribosomal RNA. SOURCE Pyrenomonas salina RNA. ORGANISM Pyrenomonas salina Eukaryota; Fungi; Chromophycota; Cryptophyceae; Cryptomonadales; Cryptomonadaceae. REFERENCE 1 (bases 1 to 1881) AUTHORS Maier,U.G., Hofmann,C.J., Eschbach,S., Wolters,J. and Igloi,G.L. TITLE Demonstration of nucleomorph-encoded eukaryotic small subunit ribosomal RNA in cryptomonads JOURNAL Mol. Gen. Genet. 230, 155-160 (1991) STANDARD full automatic COMMENT From EMBL entry PSALN16S; dated 17-DEC-1991. FEATURES Location/Qualifiers rRNA <1..>1881 /product="16S rRNA" BASE COUNT 496 a 389 c 507 g 488 t 1 others ORIGIN BASE COUNT 496 a 389 c 507 g 488 t 4023 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 UAAG|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |-------(- ---)[----- 121 ---------- --------ac gaacgauuuu ---------- -gu-a-ccgu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU ACAA-cagu- uau-aguu-- ----uauuug 241 auca<----- ---------- ---------- ---------- ---------u gcgg---cgc 301 u>ACGUGG-A UAACCGUAG( ---AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA U-|GGUGU-U GAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -AAUCCU-G( ---acu--)C 1321 AGGG-A-GGU -|A|GCGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGACGG- -GCUC(---- ---guuc)GA GU-CU-GUUC A-UUGGAAU- 1501 ------GAGG ----AUAACU -UACA--CCC C-----UU-C U-CGA-GGAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauucagacc c-gugu-gcg cggauc--g- gc-uu----- -----a-uca ---------- 1801 ---------- ------u-g- gcccuu-g-- -cggcgccgg ucua------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- cuuuugucgu 2161 ugcgaag--- ---------- ---------- ---ucugcuc uuuu------ ---------- 2221 ---guggagg agacucguga agcgacauu- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUG UG-AACA--A 2461 AAUAGAGUGU UC-AU-GG-C AGGCCuuua- -------g-- ---------- -ca------- 2521 ---------A GGCU-U--AA AUACCU-CAG CAUGGAA|UA -AUAGAA-UA -GGA---cuu 2581 ccgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-UU---- -----AGAG- CCG--AAGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA CU|--CGUAC UCCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGG-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UCUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAAGGGA- UCGAAGGCG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --gggau-ug gua-g-a-ug ua--(---cc aaaaac---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ua-uca-g ca-cccu--- ---------- ----auGA(- 3661 GAAA-)UCA- -AAGUc-uau gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-GU|-GG 4021 A-CCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUUACCAGG UC[cgg-aca 4081 uagg-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUcc c--uuuggcg ---------g ca-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- cgccgaag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----agaGG- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACG-Auc-c -g-c(----- 5041 --gguca-)g cgga-U-GGA AGGA-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACAAU--G-A UGCAA----- ---------- 5281 ---(------ ----)[ccaa cgagugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ugcuccu-ug acc(gaaa-) ggucu----g gggaau-cuu -cgaag]--- ---------- 5461 -------CUG CAU-C-G--- UGCU-A-GGG AUAGAUGAU( UGCAAUUA)U UCAUCUUG-A 5521 ACGAGG-AAU G--CCUUGUA AG-CGU-GAG (-UCAUUAA- )CUCGC-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-Uggucc- 5641 ggu-gaaa-- uga-ucgga- uuga-aagg- ucua-gugc- ---------- ---------- 5701 -------(gc ac----)--- ---------- ---------- ---------g cacu-gga-- 5761 guucgu-uua -agaa-|guu -cauugagcc uu-auc-a-u cuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.paradoxa 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X68483 ID CP16RRNA standard; RNA; PLN; 1797 BP. XX AC X68483; XX DT 13-MAY-1994 (Rel. 39, Created) DT 21-JUN-1994 (Rel. 40, Last updated, Version 4) XX DE C.paradoxa 16S-like rRNA XX KW 16S-like ribosomal RNA. XX OS Cyanophora paradoxa OC Eukaryota; Plantae; Thallobionta; Cryptophyta; Cryptophyceae; OC Cryptomonadales; Kathablepharidaceae. XX RN [1] RP 1-1797 RA Bhattacharya Na D.; RT ; RL Submitted (29-SEP-1992) to the EMBL/GenBank/DDBJ databases. RL D. Bhattacharya Na, Botanisches Institut, Universitaet zu Koeln, RL Lehrstuhl 1, Gyrhofstrasse 15, 5000 Koeln 41, FRG XX RN [3] RP 1-1797 RA Steinkotter J., Bhattacharya D., Semmelroth I., Bibeau C., RA Melkonian M.; RT "Prasinophytes form independent lineages within the chlorophyta: RT evidence from ribosomal RNA sequence comparisons"; RL J. Phycol. 30:340-345(1994). XX FH Key Location/Qualifiers FH FT source 1..1797 FT /organism="Cyanophora paradoxa" FT /strain="Kies" FT rRNA <12..>1770 FT /product="16S-like rRNA" XX SQ Sequence 1797 BP; 486 A; 353 C; 459 G; 499 T; 0 other; BASE COUNT 486 a 353 c 459 g 499 t 4106 others ORIGIN 1 |--------- -----nnnnn nnn(nnA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaacua-uuu ---------- uauac-ugu- gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAau-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUAG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-CGCC(U-G AGAGAU)GGC GACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCGC-A( ---acu--)C 1321 GCGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CAAUACGGG- -GCUU(---- ----uuc)AA GU-CU-CGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->CAUU 1561 GGAG|GG-AA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-ggg g-cggg-gca gucggu--c- -u-gccu(-a au)agg-ugu ---------- 1801 ---------- -----gu-a- -cuggc-ugu -accc---gu ccuucc---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --ggaug--g g-ugcugcuc 2161 (uuaacu--- ---------- ---------- ---)gagugg cauu------ ---------- 2221 ----cagac- --------ac ggauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AGUA--A 2461 AUUGGAGUGU UU-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 -------UAC GCUC-U--GA ACAUUAUUAG CAUGGAA|UA -AUAAAA-UA -GGACcCUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----ag-ga UUG-GG-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CAUAU UCCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGG-AAG- A-UGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|UU|--- 3421 --acgau-ca gca-g-g-ug uu--(----a auuuaac--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ug-uug-g ca-guau--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ---------- ---[CCU-AC UAAAUAGuua ---cacgaac u--------u cu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- aguucgug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gucaa- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-auu-u -g-u(----- 5041 --gucua-)a ugaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGAAU----- ---------- 5281 ---------- -----[ucaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ug acc(gaua-) ggucu----g gguaau-cuu -ugaaa]--- ---------- 5461 -------cuu cgu-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-Ucggucc 5641 ggu-gaaa-- ucu-ucgga- ucgu-ggcc- auguaccugg ---------- ---------- 5701 -------(uc u-----)--- ---------- ---------- ---------c cagg-aac-- 5761 aagguc-gcg -agaa-|guu -gauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS -Haptophyt 5903 bp RNA RNA 25-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS E.huxley.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M87327 LOCUS EMIRRNAA 1805 bp ss-rRNA RNA 03-MAR-1992 DEFINITION Emiliana huxleyi 16S-like ribosomal RNA, complete. ACCESSION M87327 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Emiliania huxleyi (sub_species Hay and Mohler) rRNA. ORGANISM Emiliania huxleyi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Phytomastigophora; Haptomonadida; Prymnesiophyceae. REFERENCE 1 (bases 1 to 1805) AUTHORS Bhattacharya,D., Medlin,L., Wainright,P.O., Ariztia,C., Bibeau,C., Stickel,S.K. and Sogin,M.L. TITLE Algae containing chlorophylls a + c are paraphyletic: Molecular evolutionary analysis of the chromophyta JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 22..1778 /product="16S-like ribosomal RNA" /gene="16S rRNA" BASE COUNT 461 a 401 c 492 g 447 t 4 others ORIGIN BASE COUNT 459 a 401 c 492 g 446 t 4105 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCU-GUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcga--cu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---ugc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--GCUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGCGU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-GCCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -GCUA(---- ---uuu-)UA GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UACA--UCU C-----UU-C A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg g-cggg-ccg accggu--c- ----ugccga ugggua-ugc ---------- 1801 ---------- ------a-c- uggccg-g-- -c----gcgu ccuuc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cacccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --agacc-g- c-gccuacuc 2161 (uuaacu--- ---------- ---------- ---)gagcgg gcgc------ ---------- 2221 ----ggga-- -------gac ggguc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AAAA--A 2461 AUCAGAGUGU UU-CA-AG-C AGGCA----- ---------- ---------- ---------- 2521 -------gUC GCUC-U-UGC AUGGAU-UAG CAUGGGA|UA -AUGAAA-UA -GGACuCUGG 2581 ug-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CG---- -----aa-ca CCG-GA-GUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CAGGGGCA CU|--CGUAU UCCGCCG-AG -AGAG(GU-G AAA---)UUC U-CAGA-C-C 3061 AGCGG-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAC -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACCAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-a-ug uu--(---cc auuugu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g ca-ccuu--- ---------- ----ucGG(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uugu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 gauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGcga c--gcgaac- ---------c cucc------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- --guucgc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uggag- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-Acu-u -g-u(----- 5041 --cuuca-)a caag-U-GGA AGUU-CGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug acc(gaga-) ggucc----g gguaau-cuu uugaaa]--- ---------- 5461 -------uug cau-c-G--- UGAU-G-GGG AUAGAUUAU( UGCAACUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GUG (-UCAUCAG- )CGCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAucc- 5641 ggu-gagg-- ccc-ccgga- cuc--gggc- gccg-cagc- ---------- ---------- 5701 -------(ug gu--uc)--- ---------- ---------- ---------- ucca-gcc-- 5761 gcgacg-ccg -ggaa-|gcu -guccgaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS E.huxley.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L04957 ID EHRGAC standard; DNA; PLN; 1799 BP. XX AC L04957; XX DT 28-OCT-1992 (Rel. 33, Created) DT 28-OCT-1992 (Rel. 33, Last updated, Version 1) XX DE Emiliania huxleyi prymnesiophyceae small subunit ribosomal RNA DE (16S-like RNA). XX KW 16S-like ribosomal RNA; chlorophyll a; chlorophyll c; KW small subunit ribosomal RNA. XX OS Emiliania huxleyi OC Eukaryota; Plantae; Thallobionta; Haptophyta; Prymnesiophyceae. XX RN [1] RP 1-1799 RA Bhattacharya D., Medlin L., Wainright P.O., Ariztia E., Bibeau C., RA Stickel S.K., Sogin M.L.; RT "Algae containing chlorophylls a + c are paraphyletic: Molecular RT evolutionary analysis of the chromophyta"; RL Unpublished. XX FH Key Location/Qualifiers FH XX SQ Sequence 1799 BP; 459 A; 401 C; 493 G; 446 T; 0 other; BASE COUNT 459 a 401 c 493 g 446 t 4104 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCU-GUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcga--cu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---ugc 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--GCUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGCGU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-GCCC gAAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -gcua(---- ---uuu-)ua gU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UACA--UCU C-----UU-C A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAACG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg g-cggg-ccg accggu--c- ug-cc--(ga ug)ggu-aug ---------- 1801 ---------- -----ca--- cuggcc-g-- ---gc---gc guccuu-cc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----acccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --agacc-g- c-gccuacuc 2161 (uuaacu--- ---------- ---------- ---)gagcgg gcgc------ ---------- 2221 ----gggag- --------ac ggguc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AAAA--A 2461 AUCAGAGUGU UU-CA-AG-C AGGCA----- ---------- ---------- ---------- 2521 -------GUC GCUC-U-uGC AUGGAU-UAG CAUGGGA|UA -AUGAAA-UA -GGACuCUGG 2581 ug-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---C|-UAUU 2821 -UU-GUUGGU -UU-CG---- -----AA-ca CCG-GA-GUA A--UGAUUAA CA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --CAGGGGCA CU|--CGUAU UCCGCCG-AG -AGAG(GU-G AAA---)UUC U-CAGA-C-C 3061 AGCGG-AAG- A-CGAACC-A CUGC(-GAAA )--GC|A--- UUUGCC-AG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAC -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACCAUGCC GAC|UA|--- 3421 --gggau-ug gag-g-a-ug uu--(---cc auuugu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g ca-ccuu--- ---------- ----ucGG(- 3661 GAAA-)CUa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uugu-gagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 gauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCGC-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGcga c--gcgaac- --------cc ucc------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---guucg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cuggag CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-Acu-u -g-u(----- 5041 --cuuca-)a caag-U-GGA AGUU-CGCGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGCAC----- ---------- 5281 ---(------ ----)[ucaa cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug acc(gaga-) ggucc----g gguaau-cuu uugaaa]--- ---------- 5461 -------uug cau-c-g--- uGAU-G-GGG AUAGAUUAU( UGCAACUA)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GUG (-UCAUCAG- )CGCAC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGAUCC- 5641 ggu-gagg-- ccc-ccgga- cucg-ggcg- ccgcagcugg ---------- ---------- 5701 -------(uu cu----)--- ---------- ---------- ---------- ccag-c-c-- 5761 gcgacg-ccg -ggaa-|gcu -guccgaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC~~~~~ ~~~~~~~~|| ||| // LOCUS -Rhizopoda 5903 bp RNA RNA 16-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS E.rotunda 5903 bp RNA RNA 11-JAN-191 DEFINITION Euglypha rotunda. ACCESSION No information KEYWORDS No information. SOURCE Euglypha rotunda. ORGANISM Euglypha rotunda. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77692 LOCUS ERSSURNA 1811 bp DNA INV 19-SEP-1994 DEFINITION E.rotunda (strain CCAP 1520/1) cytoplasmic small subunit 16S-like rRNA gene. ACCESSION X77692 KEYWORDS SSU ribosomal RNA; SSU rRNA gene. SOURCE Unknown. ORGANISM Unknown Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina. REFERENCE 1 (bases 1 to 1811) AUTHORS Bhattacharya,D., Helmchen,T. and Melkonian,M. TITLE Molecular evolutonary analysis identify an independent rhizopod lineage containing the Euglyphina and the Chlorarachniophyta:implications for the origin of plastids JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1811) AUTHORS Bhattacharya,D. TITLE Direct Submission JOURNAL Submitted (14-FEB-1994) to the EMBL/GenBank/DDBJ databases. D. Bhattacharya, Botanisches Institut, Universitaet Zu Koeln, Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG STANDARD full automatic REFERENCE 3 (bases 1 to 1811) AUTHORS Bhattacharya,D., Surek,B., Ruesing,M., Damberger,S. and Melkonian,M. TITLE Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnematales (Charophyceae) JOURNAL Unpublished STANDARD full automatic COMMENT NCBI gi: 541673 FEATURES Location/Qualifiers source 1..1811 /organism="Sarcodina" /strain="CCAP 1520/1" primer_bind 1..21 /gene="SSU rRNA" /note="5' bind" rRNA 22..1786 /gene="SSU rRNA" /product="small subunit rRNA" primer_bind 1787..1811 /gene="SSU rRNA" /note="3' bind" BASE COUNT 484 a 364 c 457 g 506 t ORIGIN BASE COUNT 484 a 364 c 457 g 506 t 4092 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-A-CA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aaacaa-cuu ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CGUA- CAGCU-CAUU AUau-cagc- aau-uauu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>acaugg-a uaaccgugg( -u-aauu)cu agagc-uaa- uacaug---- ---------- 361 ---------- ---------- ---------- -- -aguucauuc -aa|auuucu gc|--CCU-A UCA--GCUUU C-GAUGGUA- 1141 GU(-GUAAAG G)ACU-ACCA U-|GGCUA-u aac|gggu-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CGAUACCGG- -gccu(---- ---uaau)cg gu-CU-GGUA A-UCGGAAU- 1501 ------gagu ----acaauu -uaaa--ucc c-----uu-a a-cga-ggau c---->CACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--aaaag cucguaguug |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-uga u-gaac-caa auuggc--cc gu-ucccuuu cgggua-uga ---------- 1801 ---------- -----gu-g- -ccgcu-uug -a-----guu ugucau-cc- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- agagcug--c g-ucu-accg 2161 (uuuacu--- ---------- ---------- ---)cggccg gacg------ ---------- 2221 ----uaugcg au------cu ggauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --uauuacuu ug-aaaa--a 2461 auuagagugu uu-aa-ag-c aggcu----- ---------- ---------- ---------- 2521 -------uau gcu--g-uga auacau-uag cauggaa|UA -AUAAUU-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-uauu 2821 -uu-guuggu -uu-cu---- -----ag-ga CUG-AA-GUA A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|uagu ---------- 3001 --ugggggug cu|--aguau uccacgg-cc -AGAG(GU-G AAA---)UUC U-UGGA-U-u 3061 cgugg-aag- a-cuaacu-A CUGC(-GAAA )--GC|A--- UUCACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCUU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACUAUACC GAC|UC|--- 3421 --aggau-ca gug-a-a-cg uu--(---gc a-uuuc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u u-ca-uug-g ca-cugu--- ---------- ----guga(- 3661 gaaa-)uca- -aaguc-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-gg 4021 agccugcg|g cu-UAAUUUG (ACUCAA-CA )CGGG--aaa acuuaccagg uc[cag-aca 4081 uagu-gagga uu-----gac aga(uugaag a--)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuc-ga|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuuc u--ugucauc ---------g uga------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- -gauggcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggaua- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- gacu-auc-g -g-u(----- 5041 --ggaua-)g ccga-u-gga aguu-cgagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|uGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-a uacgu----- ---------- 5281 ---------- -----[ucau cgagcuc-u- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---accu-ug acu(gaaa-) agucu----g gguaau-cuu cucaac]--- ---------- 5461 -------gcg uau-c-g--- ugau-g-ggg auagauuau( uguaauuu)u ugaucuuc-a 5521 acgagg-aau u--ccuagua aa-cGC-GCG (-UCAUUAA- )CGCGC-a-u -ugauuacg- 5581 u-cccugccc uu|ugua-ca caccgcccgu cgcuac-u-a cc-gau--ug ga-ugguuu- 5641 agu-gagg-- uuc-acgga- cugu-ugcc- ucugguugg- ---------- ---------- 5701 -------(-- -u--uu)--- ---------- ---------- ---------- ccuu-ccu-- 5761 uuggcauacu -ggaa-|gug -acccaaacu ug-auc-a-u cuag-aggaa gu-aaaa-g- 5821 ucguaacaag gu-------- -----u-u-c cguAG-(UGA A)CCUgcaga aggauca--- 5881 ---------- -------~|| ||| // LOCUS H.vermif.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75515 ID HVDNACCAP standard; DNA; INV; 1840 BP. XX AC X75515; XX DT 05-JUL-1994 (Rel. 40, Created) DT 05-JUL-1994 (Rel. 40, Last updated, Version 2) XX DE H.vermiformis gene for nsrRNA (CCAP 1534/7B) XX KW small ribosomal subunit RNA. XX OS Hartmannella vermiformis OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Hartmannellidae. XX RN [1] RA Weekers P.H.H., Gast R.J., Fuerst P.A., Byers T.J.; RT "Sequence variations in small-subunit ribosomal RNAs of RT Hartmannella vermiformis and their phylogenetic implications"; RL Mol. Biol. Evol. 11:684-690(1994). XX RN [2] RP 1-1840 RA Weekers P.H.H.; RT ; RL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. RL P.H.H. Weekers, University of Albama at Birmingham, Dept of RL Biochemistry & Molecular Genetic, 1918 University Boulevard, Basic RL Health Sciences 555, UAB Station, Birmingham, Albama 35294-0005, RL USA XX FH Key Location/Qualifiers FH FT source 1..1840 FT /organism="Hartmannella vermiformis" FT /strain="derived from monoxenic strain CCAP#1534 /7B" FT /cell_line="Hartmannella vermiformis" FT rRNA 1..1840 FT /gene="nuclear small-subunit ribosomal RNA (nsrRNA)" FT primer_bind 1..23 FT /note="PCR primer 5'" FT primer_bind 1818..1840 FT /note="PCR primer 3'" XX SQ Sequence 1840 BP; 477 A; 400 C; 511 G; 452 T; 0 other; BASE COUNT 477 a 400 c 511 g 452 t 4063 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcga-ucu ---------- uau-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguc-- ----uacuug 241 aucg<----- ---------- ---------- ---------- ---------- --uaucuucu 301 u>acaugg-a uaaccguag( -u-aaau)cu agagc-uaa- uacaug---- ---------- 361 ---------- ---------- ---------- --gauu 1561 ggag|gg-ca a-gu-c-ugg u-g(cca-gc -agcc|gc-g gu-aa)uucc ag-|cuccaa 1621 u-AGCGUA|U AUUAA--agu uguug-cag| uua--aaaag cucguaguug |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-gga a-gguc-cuu agcagu---c cg-cccc(uu cg)ggg-agc ---------- 1801 ---------- -----gg-g- cugcug-gcc -uccuauguu ccuaac-ggu cc-------- 1861 ucau------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --ccc--cga gggugg--gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aucaacc-g- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- -------cua ggauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guuuacuu ug-agga--a 2461 auuagagugu uc-aa-ag-c aggcguaac- ---------- ---------- ---------- 2521 --------uc gccu-c-cga auacgu-uag cauggga|UA -AUGGAA-UA -CGACuUCGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---u|-uguu 2821 -uc-guuggu -uu-cgc--- -----uu-gg CUG-AA-GUA A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cagu ---------- 3001 --ugggggca uu|--aguau uuaguug-uc -AGAG(GU-G AAA---)UUC U-AGGA-U-u 3061 uacua-aag- a-cugacc-A AUGC(-GAAA )--GC|A--- uuugcc-aa| gg-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aug ---uuuucau -UAA-U|CA- A-GAACGAAA 3301 GUAGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CU--ACC-GU AAACUAUGCC GAC|ca|--- 3421 --gggau-cc gga-g-a--g uuu-----gc auggau---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cc-cgg-g ca-ccuu--- ---------- ----guga(- 3661 gaaa-)ucau -aagug-UUU GGGU|-U|U- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-gg 4021 aa-cugcg|g cu-UAAUUUG (ACUCAA-CA )CGGG--gaa acuuacgagg uc[agg-aca 4081 cugu-gagga uu-----gac aga(uugaaa g-c)------ ucuuu----- cuu-gauu-c 4141 aguggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuu-aa|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuca ---cgcgaac cggucc---g caa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -gggcucaaa guucgcgg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cucga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- gacu-auu-c -g-c(----- 5041 acccgcca)g cgaa-u-gga aguu-ugagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cu- 5221 u-aga-uguu cucg-gccgc a-cgcgcguu acacu--g-a cggag----- ---------- 5281 ---------- -----[ucaa cgagc----- ---------- -----g---- ---------- 5341 -uuuu----- ---------- ---------- ---------- ---------- ---------- 5401 ---uccu-ug ccc(gaua-) gggcu----g gguaac-cuc cugaaa]--- ---------- 5461 -------cuc cgu-c-g--- ugau-g-ggg auagaucau( ugcaauua)u ugaucuug-a 5521 acgagg-aau u--ccuagua ag-cgc-gag (-ucaucaa- )cucgc-g-c -ugauuacg- 5581 u-cccugccc uu|ugua-ca caccgcccgu cgcucc-u-a cc-gau--ug aa-cggucc- 5641 ggc-gaga-- acu-ccgga- uggu-cggu- aggaaggg-- ---------- ---------- 5701 -------(gu ca--aa)--- ---------- ---------- ---------- --cc-cug-- 5761 uguccgugcc -agaa-|gcu -guucgaacc uu-acc-g-u uuag-aggaa gg-agaa-g- 5821 ucguaacaag gu-------- -----a-u-c cguag-(uga a)ccugcaga aggauca--- 5881 --gga----- -------~|| ||| // LOCUS H.vermif.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75514 ID HVDNAOS11 standard; DNA; INV; 1840 BP. XX AC X75514; XX DT 05-JUL-1994 (Rel. 40, Created) DT 05-JUL-1994 (Rel. 40, Last updated, Version 2) XX DE H.vermiformis gene for nsrRNA (OS-101) XX KW small ribosomal subunit RNA. XX OS Hartmannella vermiformis OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Hartmannellidae. XX RN [1] RA Weekers P.H.H., Gast R.J., Fuerst P.A., Byers T.J.; RT "Sequence variations in small-subunit ribosomal RNAs of RT Hartmannella vermiformis and their phylogenetic implications"; RL Mol. Biol. Evol. 11:684-690(1994). XX RN [2] RP 1-1840 RA Weekers P.H.H.; RT ; RL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. RL P.H.H. Weekers, University of Albama at Birmingham, Dept of RL Biochemistry & Molecular Genetic, 1918 University Boulevard, Basic RL Health Sciences 555, UAB Station, Birmingham, Albama 35294-0005, RL USA XX FH Key Location/Qualifiers FH FT source 1..1840 FT /organism="Hartmannella vermiformis" FT /strain="#OS-101" FT /cell_line="Hartmannella vermiformis" FT rRNA 1..1840 FT /gene="nuclear small-subunit ribosomal RNA (nsrRNA)" FT primer_bind 1..23 FT /note="PCR primer 5'" FT primer_bind 1818..1840 FT /note="PCR primer 3'" XX SQ Sequence 1840 BP; 475 A; 401 C; 513 G; 451 T; 0 other; BASE COUNT 475 a 401 c 513 g 451 t 4063 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcga-ucu ---------- uau-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguc-- ----uacuug 241 aucg<----- ---------- ---------- ---------- ---------- --uaucuucu 301 u>acaugg-a uaaccguag( -u-aaau)cu agagc-uaa- uacaug---- ---------- 361 ---------- ---------- ---------- --gauu 1561 ggag|gg-ca a-gu-c-ugg u-g(cca-gc -agcc|gc-g gu-aa)uucc ag-|cuccaa 1621 u-AGCGUA|U AUUAA--agu uguug-cag| uua--aaaag cucguaguug |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-gga a-gguc-cuu agcagu---c cg-cccc(uu cg)ggg-agc ---------- 1801 ---------- -----gg-g- uugcug-gcc -uccuauguu cccaac-ggu cc-------- 1861 ucau------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --ccg--cga gggugg--gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aucaacc-g- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- -------gug ggauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guuuacuu ug-agga--a 2461 auuagagugu uc-aa-ag-c aggcguaac- ---------- ---------- ---------- 2521 --------uc gccu-c-cga auacgu-uag cauggga|UA -AUGGAA-UA -CGACuUCGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---u|-uguu 2821 -uc-guuggu -uu-cgc--- -----uu-gg CUG-AA-GUA A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cagu ---------- 3001 --ugggggca uu|--aguau uuaguug-uc -AGAG(GU-G AAA---)UUC U-AGGA-U-u 3061 uacua-aag- a-cugacc-A AUGC(-GAAA )--GC|A--- uuugcc-aa| gg-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aug ---uuuucau -UAA-U|CA- A-GAACGAAA 3301 GUAGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CU--ACC-GU AAACUAUGCC GAC|ca|--- 3421 --gggau-cc gga-g-a--g uuu-----gc auggau---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cc-cgg-g ca-ccuu--- ---------- ----guga(- 3661 gaaa-)ucau -aagug-UUU GGGU|-U|U- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-gg 4021 aa-cugcg|g cu-UAAUUUG (ACUCAA-CA )CGGG--gaa acuuacgagg uc[agg-aca 4081 cugu-gagga uu-----gac aga(uugaaa g-c)------ ucuuu----- cuu-gauu-c 4141 aguggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuu-aa|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuca ---cgcgaac cggucc---g caa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -gggcucaaa guucgcgg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cucga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- gacu-auu-c -g-c(----- 5041 acccgcca)g cgaa-u-gga aguu-ugagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cu- 5221 u-aga-uguu cucg-gccgc a-cgcgcguu acacu--g-a cggag----- ---------- 5281 ---------- -----[ucaa cgagc----- ---------- -----g---- ---------- 5341 -uuuu----- ---------- ---------- ---------- ---------- ---------- 5401 ---uccu-ug ccc(gaua-) gggcu----g gguaac-cuc cugaaa]--- ---------- 5461 -------cuc cgu-c-g--- ugau-g-ggg auagaucau( ugcaauua)u ugaucuug-a 5521 acgagg-aau u--ccuagua ag-cgc-gag (-ucaucaa- )cucgc-g-c -ugauuacg- 5581 u-cccugccc uu|ugua-ca caccgcccgu cgcucc-u-a cc-gau--ug aa-cggucc- 5641 ggc-gaga-- acu-ccgga- uggu-cggc- acgcaggg-- ---------- ---------- 5701 -------(gu ca--aa)--- ---------- ---------- ---------- --cc-cug-- 5761 uguccgugcc -agaa-|gcu -guucgaacc uu-acc-g-u uuag-aggaa gg-agaa-g- 5821 ucguaacaag gu-------- -----a-u-c cguag-(uga a)ccugcaga aggauca--- 5881 --gga----- -------~|| ||| // LOCUS H.vermif.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X75513 ID HVDNACDC standard; DNA; INV; 1840 BP. XX AC X75513; XX DT 05-JUL-1994 (Rel. 40, Created) DT 05-JUL-1994 (Rel. 40, Last updated, Version 2) XX DE H.vermiformis gene for nsrRNA (CDC-19) XX KW small ribosomal subunit RNA. XX OS Hartmannella vermiformis OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Hartmannellidae. XX RN [1] RA Weekers P.H.H., Gast R.J., Fuerst P.A., Byers T.J.; RT "Sequence variations in small-subunit ribosomal RNAs of RT Hartmannella vermiformis and their phylogenetic implications"; RL Mol. Biol. Evol. 11:684-690(1994). XX RN [2] RP 1-1840 RA Weekers P.H.H.; RT ; RL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. RL P.H.H. Weekers, University of Albama at Birmingham, Dept of RL Biochemistry & Molecular Genetic, 1918 University Boulevard, Basic RL Health Sciences 555, UAB Station, Birmingham, Albama 35294-0005, RL USA XX FH Key Location/Qualifiers FH FT source 1..1840 FT /organism="Hartmannella vermiformis" FT /strain="#CDC-19" FT /cell_line="Hartmannella vermiformis" FT rRNA 1..1840 FT /gene="nuclear small-subunit ribosomal RNA" FT primer_bind 1..23 FT /gene="nuclear small-subunit ribosomal RNA" FT primer_bind 1818..1840 FT /gene="nuclear small-subunit ribosomal RNA" XX SQ Sequence 1840 BP; 475 A; 402 C; 511 G; 452 T; 0 other; BASE COUNT 475 a 402 c 511 g 452 t 4063 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcga-ucu ---------- uau-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguc-- ----uacuug 241 aucg<----- ---------- ---------- ---------- ---------- --uaucuucu 301 u>acaugg-a uaaccguag( -u-aaau)cu agagc-uaa- uacaug---- ---------- 361 ---------- ---------- ---------- --gauu 1561 ggag|gg-ca a-gu-c-ugg u-g(cca-gc -agcc|gc-g gu-aa)uucc ag-|cuccaa 1621 u-AGCGUA|U AUUAA--agu uguug-cag| uua--aaaag cucguaguug |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-gga a-gguc-uuu agcagu---c cg-cccc(uu cg)ggg-agc ---------- 1801 ---------- -----gg-g- uugcug-gcc -uccuauguu ccuaa----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --cgguccu- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --caucc-gc gagggugggg 2161 aaucaac--- ---------- ---------- ---cg----- ---------- ---------- 2221 ---------- -------cua ggauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guuuacuu ug-agga--a 2461 auuagagugu uc-aa-ag-c aggcguaac- ---------- ---------- ---------- 2521 --------uc gccu-c-cga auacgu-uag cauggga|UA -AUGGAA-UA -CGACuUCGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---u|-uguu 2821 -uc-guuggu -uu-cgc--- -----uu-gg CUG-AA-GUA A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cagu ---------- 3001 --ugggggca uu|--aguau uuaguug-uc -AGAG(GU-G AAA---)UUC U-AGGA-U-u 3061 uacua-aag- a-cugacc-A AUGC(-GAAA )--GC|A--- uuugcc-aa| gg-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aug ---uuuucau -UAA-U|CA- A-GAACGAAA 3301 GUAGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CU--ACC-GU AAACUAUGCC GAC|ca|--- 3421 --gggau-cc gga-g-a--g uuu-----gc auggau---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cc-cgg-g ca-ccuu--- ---------- ----guga(- 3661 gaaa-)ucau -aagug-UUU GGGU|-U|U- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-gg 4021 aa-cugcg|g cu-UAAUUUG (ACUCAA-CA )CGGG--gaa acuuacgagg uc[agg-aca 4081 cugu-gagga uu-----gac aga(uugaaa g-c)------ ucuuu----- cuu-gauu-c 4141 aguggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuu-aa|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuca ---cgcgaac cggucc---g caa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -gggcucaaa guucgcgg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cucga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- gacu-auu-c -g-c(----- 5041 acccgcca)g cgaa-u-gga aguu-ugagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cu- 5221 u-aga-uguu cucg-gccgc a-cgcgcguu acacu--g-a cggag----- ---------- 5281 ---------- -----[ucaa cgagc----- ---------- -----g---- ---------- 5341 -uuuu----- ---------- ---------- ---------- ---------- ---------- 5401 ---uccu-ug ccc(gaca-) gggcu----g gguaac-cuc cugaaa]--- ---------- 5461 -------cuc cgu-c-g--- ugau-g-ggg auagaucau( ugcaauua)u ugaucuug-a 5521 acgagg-aau u--ccuagua ag-cgc-gag (-ucaucaa- )cucgc-g-c -ugauuacg- 5581 u-cccugccc uu|ugua-ca caccgcccgu cgcucc-u-a cc-gau--ug aa-cggucc- 5641 ggc-gaga-- acu-ccgga- uggu-cggc- acgcaggg-- ---------- ---------- 5701 -------(gu ca--aa)--- ---------- ---------- ---------- --cc-cug-- 5761 uguccgcgcc -agaa-|gcu -guucgaacc uu-acc-g-u uuag-aggaa gg-agaa-g- 5821 ucguaacaag gu-------- -----a-u-c cguag-(uga a)ccugcaga aggauca--- 5881 --gga----- -------~|| ||| // LOCUS H.vermif.4 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M95168 LOCUS HRTSSRRNA 1840 bp ss-rRNA RNA 11-JUN-1992 DEFINITION Hartmanella vermiformis small subunit ribosomal RNA. ACCESSION M95168 KEYWORDS small subunit ribosomal RNA. SOURCE Hartmanella vermiformis rRNA. ORGANISM Hartmanella vermiformis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; Hartmannellidae. REFERENCE 1 (bases 1 to 1840) AUTHORS Gunderson,J. and Sogin,M.L. JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..1840 /note="16S-like RNA" /product="small subunit ribosomal RNA" BASE COUNT 476 a 402 c 506 g 453 t 3 others ORIGIN BASE COUNT 476 a 402 c 506 g 453 t 4066 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGYCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ---------- --------au aagcua-ucu ---------- uau-a-cagc gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguc-- ----uacuug 241 aucg<----- ---------- ---------- ---------- ---------- --uaucuucu 301 u>acaugg-a uaaccguag( -u-aaau)cu agagc-uaa- uacaug---- ---------- 361 ---------- ---------- ---------- --gauu 1561 ggag|gg-ca a-gu-c-ugg u-g(cca-gc -agcc|gc-g gu-aa)uucc ag-|cuccaa 1621 u-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--aaaag cucguaguug |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc-gga a-gguc-uuu aguggu---c cg-cccc(uu cg)ggg-agc ---------- 1801 ---------- -----gg-g- ucacug-gcc -uccuauguu ccuaac-ggu cc-------- 1861 ucau------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --ccg--cga gggugg--gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- aucaacc-g- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- -------cua ggauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guuuacuu ug-agga--a 2461 auuagagugu uc-aa-ag-c aggcguaac- ---------- ---------- ---------- 2521 --------uc gccu-c-cga auacgu-uag cauggga|UA -AUGGAA-UA -CGACuUCGG 2581 uc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---u|-uguu 2821 -uc-guuggu -uu-cgc--- -----uu-gg CUG-AA-GUA A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cagu ---------- 3001 --ugggggca uu|--aguau uuaguug-uc -AGAG(GU-G AAA---)UUC U-AGGA-U-u 3061 uacua-aag- a-cugacc-A AUGC(-GAAA )--GC|A--- uuugcc-aa| gg-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aug ---uuuucau -UAA-U|CA- A-GAACGAAA 3301 GUAGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CU--ACC-GU AAACUAUGCC GAC|ca|--- 3421 --gggau-cc gga-g-a--g uuu-----gc auggau---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cc-cgg-g ca-ccuu--- ---------- ----guga(- 3661 gaaa-)ucau -aagug-UUU GGGU|-U|U- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-gg 4021 aaccugcg|g cu-UAAUUUG (ACUCAA-CA )CGGG--gaa acuuacgagg uc[agg-aca 4081 cugu-gagga uu-----gac aga(uugaaa g-c)------ ucuuu----- cuu-gauu-c 4141 aguggg---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ug-gu- ggu-g-caug |gcc|gu-uc uua|guugg- u|gga(-gug 4261 a-)uuuguc- -ugg(uu-aa uu)ccguua- ac-gaacgag accuu-aa|- ---------- 4321 ---------- ---[CCU-GC UAAAUAGuca ---cgcgaac cggucc---g caa------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -gggcucaaa guucgcgg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cucga- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- gacu-auu-c -g-c(----- 5041 acccgcca)g cgaa-u-gga aguu-ugagg caauaa--ca ggu------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cu- 5221 u-aga-uguu cucg-gccgc a-cgcgcguu acacu--g-a cggag----- ---------- 5281 ---------- -----[ucaa cgagc----- ---------- -----g---- ---------- 5341 -uuuu----- ---------- ---------- ---------- ---------- ---------- 5401 ---uccu-ug ccc(gaca-) gggcu----g gguaac-cuc cugaaa]--- ---------- 5461 -------cuc cgu-c-g--- ugau-g-ggg auagaucau( ugcaauua)u ugaucuug-a 5521 acgagg-aau u--ccuagua ag-cgc-gag (-ucaucaa- )cucgc-g-c -ugauuacg- 5581 u-cccugccc uu|ugua-ca caccgcccsu cgcucc-u-a cc-gau--ug aa-cggucc- 5641 ggc-gaga-- acu-ccgga- uggu-cggc- acgcaggg-- ---------- ---------- 5701 -------(gu ca--aa)--- ---------- ---------- ---------- --cc-cug-- 5761 uguccgugcc -agaa-|gcu -guucgaacc uu-acc-g-u uuag-aggaa gg-agaa-g- 5821 ucguaacaag gu-------- -----a-u-c cguag-(uga a)ccugcaga aggauca--- 5881 --agc----- -------~|| ||| // LOCUS P.jugosus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M98050 LOCUS PJURG16S 2114 bp ds-DNA INV 06-AUG-1992 DEFINITION Paratetramitus jugosus 16S ribosomal RNA-like gene. ACCESSION M98050 KEYWORDS 16S ribosomal RNA; protist; ribosomal RNA small subunit. SOURCE Paratetramitus jugosus (library: ATCC 30703) DNA. ORGANISM Paratetramitus jugosus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Vahlkampfiidae. REFERENCE 1 (bases 1 to 2114) AUTHORS Hinkle,G. and Sogin,M.L. TITLE The evolution of the Vahlkampfiidae as deduced from small subunit ribosomal RNA analysis JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..2114 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 594 a 409 c 544 g 561 t 6 others ORIGIN BASE COUNT 594 a 409 c 544 g 561 t 3795 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GA|------- |-------(- ---)[-ucgg 121 cauaguu--- --uugggaag -agguucgcc u-caacccuu auuca-uugu uaa]------ 181 -----|---u cu|g-ugaa- aggcu-cauu aaac-aagu- uau-gaau-- ----uu---a 241 gcc------- ---------- ---------- ---------- ---------- ---------- 301 ->accugg-u acaacccuu( -c-gggg)au gggaa-uaa- cacugu---- ---------- 361 ---------- ---------- ---------- -- -ccaggaaga uau|guuucu aa|--ucu-a uca--gcuca g--uaguuu- 1141 cg(-guaaag g)cga-aacg a-|ggcua-u aac|ggau-- a-cggg|gga -u-(uggu-) 1201 guc-caacu- ccg|GAGAGA G-AGCC(U-G AGAAAC)GGC UAUC-ACAUC (uaag-)gac 1261 -ggcagc-a- ---------| ggc-gc-gu- aaauu-accc -aauucu-a( ---auu--)c 1321 agag-a-ggu -|a|GUGACA AGAC-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- -------agc 1441 gacuuuacac caaauggug- -gaaa--ggu ac-----)ca cu-uu-gugg u-uugaaau- 1501 ------ggau ----ggagau -uaaa--ccu c-----uc-c a-uga-guag c---->aauu 1561 agag|ga-ca a-gu-c-ugg u-g(ccg-gc -accc|gc-g gu-aa)uucc ag-|cucuaa 1621 a-AGUGUA|U AUUAA--uac uguug-uag| uua--aaacg cccguaguaa |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------- 1741 -------ac- ---------- ca-------- ---------a aggguc-a-- ---------- 1801 ---------- -----ua-g- u---ua-uu- -g-----auc ---------- ---------- 1861 ug----auca g-uucu--gu uca--ucaua guc-gg-u-- -cac------ g---u----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------auu- --gu---ggc ug---auug- -----gg-u- --------g- ---gauaagg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- ---------- -------c-- 2161 -aggu----- ---------- ---------- ---ccucggu cucu------ ---------- 2221 ---aacggaa gcgaaagggu ccgcccr--- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 auuagcaucc gcca-u-ggg auaggucaau gauuauggcu cguucccuau -caguCcgua 2581 aggu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------cuga uagggccaau uggcacaacc guaaacaaau cagagugcuc caagcaggca 2761 auguacgggg uaaccauuug cuugaaugau uuagcaugga auugucacga agccgaucgg 2821 -na-acuuca -ag-gauucc ugagaagugg aagauccggc g-uucgcaau ga-------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- gacac|ugau ---------- 3001 --agaggauc ca|--aguac uauggcg-cg -AGAG(GU-G AAA---)UUC A-GUGA-C-c 3061 gcuau-aug- a-cuaucu-A AUGC(-GAAA )--GC|A--- guugug-au| cc-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aga gcgugucugu -CAA-U|CA- G-GGACGAAA 3301 GUUAAGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-GU AAACGAUACC AAC|ac|--- 3421 --gagauugg uag-u-g-ag ac---uuuua ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------ga-u c-cu-auc-a ga-aucc--- ---------- ----aagg(- 3661 gaaa-)ccgu uaaguu-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-AGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-rg 4021 aguaugcg|g cu-UAAUUCG (ACUCAA-CG )CGGG--gaa acucaccaag uu[agg-aug 4081 ugaa-uauga uu-----gac aga(uuaagg u--)------ ucuuu----- cuu-gauu-u 4141 uacaga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ag-gu- ggu-g-caug |guc|gu-uc uua|guucg- u|gga(-gug 4261 a-)uucguc- -uug(uu-aa uu)caguua- ac-gagcgag accuu-aa|- ---------- 4321 ---------- ---[CUU-GC UAAUUaaggu a--caggga- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ----cuu-cu ucgg-uuguc caucguuucg uugggggaau guauauuucc 4621 ucaggaaacc uguacu---- --gucacu-g uucg-cag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugaug- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- uaca-gca-c -c-c(----- 5041 --gcuuca)g ggug-a-gga aguu-uaagg caauaa--ca gau------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cu- 5221 u-aga-uauc uugg-gcugc a-cgcguacu acaau--a-u uaaua----- ---------- 5281 ---------- -----[gcaa caag------ -uaacguara gu-caucuuu cgggaug-ca 5341 ac-------- ---------- ---------- ---------- ---------- ---------- 5401 ----ccu-gg ucc(gaaa-) ggauu----g ggaaau-cuu aucaaa]--- ---------- 5461 -------gau uaa-u-g--- ugac-a-ggg aucgagguu( uguaa---)a uccucgug-a 5521 acgagg-aau u--ccuagua ag-cau-gau (-ucaucau- )gucgu-a-u -uggcuucg- 5581 u-cccugccu uu|ugua-ca caccgcccgu cgcucg-u-a cc-gac--ug aa-uagagg- 5641 uau-gaau-- uug-aygga- ccag-cguu- gcu------- ---------- ---------- 5701 -------(cu a-----)--- ---------- ---------- ---------- -------a-- 5761 gcaaug-cga -gaaa-|auc -aacugaauu uc-ucu-a-u uugu-aggaa cg-agra-g- 5821 ucguaacaag gu-------- -----c-u-u cguagg(uga a)ccugcaga aggauca--- 5881 --agc----- -------~|| ||| // LOCUS T.rostratu 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M98051 LOCUS TEIRG16S 2119 bp ds-DNA INV 06-AUG-1992 DEFINITION Tetramitus rostratus 16S ribosomal RNA-like gene. ACCESSION M98051 KEYWORDS 16S ribosomal RNA; protist; ribosomal RNA small subunit. SOURCE Tetramitus rostratus (library: ATCC 30216) DNA. ORGANISM Tetramitus rostratus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Vahlkampfiidae. REFERENCE 1 (bases 1 to 2119) AUTHORS Hinkle,G. and Sogin,M.L. TITLE The evolution of the Vahlkampfiidae as deduced from small subunit ribosomal RNA analysis JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..2119 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 587 a 414 c 553 g 565 t ORIGIN BASE COUNT 587 a 414 c 553 g 565 t 3784 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAG|-GAUU AA-GCCAUGC A-UGUGU-AA GA|------- |-------(- ---)[-ucgg 121 cauaguu--- --uugggaag uagguucgcc uacgacccuu auuca-uugu uaa]------ 181 -----|---u cu|g-ugaa- aggcu-cauu aaac-aagu- uau-gaau-- ----uu---a 241 gcc------- ---------- ---------- ---------- ---------- ---------- 301 ->accugg-u acaacccuu( -c-ggg-)au gggaa-uaa- cacugu---- ---------- 361 ---------- ---------- ---------- -- -ccaggaaga uau|guuucu aa|--ucu-a uca--gcuca g--uaguuu- 1141 cg(-guaaag g)cga-aacg a-|ggcua-u aac|ggau-- a-cggg|gga -u-(uggu-) 1201 guc-caacu- ccg|GAGAGA G-AGCC(U-G AGAAAC)GGC UAUC-ACAUC (uaag-)gac 1261 -ggcagc-a- ---------| ggc-gc-gu- aaauu-accc -aauccu-a( ---auu--)c 1321 aggg-a-ggu -|a|GUGACA AGAC-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- -------agc 1441 gacuuuacac cauu-ggug- -gaaa--ggu ac-----)ca ca-uu-gugg u-uugaaau- 1501 ------ggau ----ggagau -uaaa--ccu c-----uc-c a-uga-guag c---->aauu 1561 agag|ga-ca a-gu-c-ugg u-g(cca-gc -accc|gc-g gu-aa)uucc ag-|cucuaa 1621 a-AGUGUA|U AUUAA--uac uguug-uag| uua--aaacg cccguaguaa |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------- 1741 --a-----c- ---------- ca-------- ---------a aggguc-a-- ---------- 1801 ---------- -----ua-g- u---ua-uu- -g-----auc ---------- ---------- 1861 ugac----ca g-uucu--gu u------cg- ---------u c-------au ag-uc----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------a--- --gccacgua uuguggcuga ---uuggau- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --------ga auaaggac-- 2161 -aggu----- ---------- ---------- ---ccucggu cucu------ ---------- 2221 ---aacggaa gcgaaagggu ucgcccaacu agc------a u-ccgc--ca uggga----- 2281 ---u------ ---------- ---------- ---------- -agguc---- ---agu---g 2341 auuaug-gcu cgcucccug- -ucaguccgc aaggucugau agggccauuu ggcacaaccg 2401 uaaaca---- ---------- ---------- ---------- -aauca---- ---------- 2461 ---------- ---------- -------ga- -------g-- ---------- -u--gcucca 2521 agcaggcaa- -ugu-----u -----agggg u--------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ----aacc-- c--------- auu-ugc-u- ----ugaaug 2761 auu------- ------uagc auggaauu-- ---g---uca cg-------- ---------- 2821 ---------- -------aag ccga--ucg- ---------- ---------- -------gaa 2881 ac-uuugagg guuuaccuga gaaguggaag auccggcgcu cgcaauga-- ---------- 2941 ---------- ---------- ---------- ---------- gacac|uggu ---------- 3001 --agaggauc ca|--aguac uauggcg-cg -AGAG(GU-G AAA---)UUC A-GUGA-C-c 3061 gccau-aug- a-cuaucu-A AUGC(-GAAA )--GC|A--- guugug-au| cc-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aga acgugucugu -CAA-U|CA- G-GGACGAAA 3301 GUUAAGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-GU AAACGAUACC AAC|ac|--- 3421 --gagauugg uag-u-g-ag ac---uuuua ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------ga-u c-cu-auc-a ga-aucc--- ---------- ----aagg(- 3661 gaaa-)ccgu uaaguu-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-AGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-gg 4021 aguaugcg|g cu-UAAUUCG (ACUCAA-CG )CGGG--gaa acucaccaag uu[agg-aug 4081 ugaa-uauga uu-----gac aga(uuaagg u--)------ ucuuu----- cuu-gauu-u 4141 uacaga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ag-gu- ggu-g-caug |guc|gu-uc uua|guucg- u|gga(-gug 4261 a-)uucguc- -uug(uu-aa uu)caguua- ac-gagcgag accuu-aa|- ---------- 4321 ---------- ---[CUU-GC UAAUUaaggu a--caggga- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ----cuu-cu ucgg-uuguc cgucguuucg uugaggaagu guauacuuuc 4621 ucaggaaauc uguacu---- --gucgcugg uucgccag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugaug- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- uaca-gca-c -c-c(----- 5041 ---gucca)g ggug-a-gga aguu-uaagg caauaa--ca gau------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cu- 5221 u-aga-uauc uugg-gcugc a-cgcguacu acaau--a-u uaaua----- ---------- 5281 ---------- -----[gcaa caag------ -uaacguaga gu-cauucuu cggaaug-ca 5341 ac-------- ---------- ---------- ---------- ---------- ---------- 5401 ----ccu-gg ucc(gaaa-) ggauu----g ggaaau-cuu aucaaa]--- ---------- 5461 -------gau uaa-u-g--- ugac-a-ggg aucgagguu( uguaa---)a uccucgug-a 5521 acgagg-aau u--ccuagua ag-cau-gau (-ucaucau- )gucgu-a-u -uggcuucg- 5581 u-cccugccu uu|ugua-ca caccgcccgu cgcucg-u-a cc-gac--ug aa-uagagg- 5641 uau-gaau-- uug-augga- ccag-cgug- gc-------- ---------- ---------- 5701 -------(gu ua--a-)--- ---------- ---------- ---------- ---------- 5761 gccaug-cga -gaaa-|auc -aacugaauu uc-ucu-a-u uugu-aggaa cg-agaa-g- 5821 ucguaacaag gu-------- -----c-u-u cguagg(uga a)ccugcaga aggauca--- 5881 --agc----- -------~|| ||| // LOCUS V.lobospin 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M98052 LOCUS VALRG16S 2137 bp ds-DNA INV 06-AUG-1992 DEFINITION Vahlkampfia lobospinosa 16S ribosoma RNA-like gene. ACCESSION M98052 KEYWORDS 16S ribosomal RNA; protist; ribosomal RNA small subunit. SOURCE Vahlkampfia lobospinosa (library: ATCC 30298) DNA. ORGANISM Vahlkampfia lobospinosa Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Vahlkampfiidae. REFERENCE 1 (bases 1 to 2137) AUTHORS Hinkle,G. and Sogin,M.L. TITLE The evolution of the Vahlkampfiidae as deduced from small subunit ribosomal RNA analysis JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..2137 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 592 a 417 c 556 g 572 t ORIGIN BASE COUNT 592 a 417 c 556 g 572 t 3766 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAG|-GAUU AA-GCCAUGC A-UGUGU-AA GA|------- |-------(- ---)[ucggc 121 auaggcauau ggggaagugg guuucggcuc augaccucuu guuca-uugu uaa]------ 181 -----|---u cu|g-ugaa- aggcu-cauu aaac-aagu- uau-gaau-- ----uu---a 241 gcc------- ---------- ---------- ---------- ---------- ---------- 301 ->accugg-a acaacccuu( -c-gggg)au uggaa-uaa- cacugu---- ---------- 361 ---------- ---------- ---------- -- -ccaggaaga gau|guuucu aa|--ucu-a uca--gcucc g--uaguuu- 1141 ug(-guaaag g)cga-aaca u-|ggcua-u cac|ggau-- a-cggg|gga -u-(uggu-) 1201 guc-caacu- ccg|GAGAGA G-AGCC(U-G AGAAAC)GGC UAUC-ACAUC (uaag-)gac 1261 -ggcagc-a- ---------| ggc-gc-gu- aaauu-accc -aauccu-a( ---auu--)c 1321 aggg-a-ggu -|a|GUGACA AGAC-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- -------agc 1441 gacuuuacac cgaauggug- -gaaa--ggu ca-----)ca cu-uu-gugg u-uugaaau- 1501 ------ggau ----ggagau -uaaa--ccu c-----uc-c a-uga-guag c---->aauu 1561 gagg|ga-ca a-gu-c-ugg u-g(cca-gc -a-cc|gc-g gu-aa)uucc ag-|cucuaa 1621 a-AGUGUA|U AUUAA--uac uguug-uag| uua--aaacg cccguaguau |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -acca----- ------aag- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---gguuaug auuguugauc uggcuagugc uguccaucgu gaucggucac 2401 guauugugau cgauugguug ggcaaggacu ggucccucgg acucuaaaua ggagcgaacg 2461 gauuccaagu ag-cucuuau caaagggau- -------a-- ---------- -ggucaauag 2521 ucguaacucg cucc-c-uac cagucuucgg auugguaggg ccuauuggca -caacCguaa 2581 acaa------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------auca gagugcucca ggcaggcaau guuugggggu aaccccguuu gcu-ugaaug 2761 auu------- ------uagc auggaauu-- ---g---uca cg-------- ---------- 2821 ---------- -------aag -c-------- ---------- ---------- ------cgaa 2881 cagaagccuc aaggg-uucg ccugacaggu ggaagucccg gcgcucguaa uga------- 2941 ---------- ---------- ---------- ---------- gacac|aggu ---------- 3001 --agaggauc ca|--aguac uauggcg-cg -AGAG(GU-G AAA---)UUC A-GUGA-C-c 3061 gccau-aug- ---uaucu-A AUGC(-GAAA )--GC|A--- guugug-au| cc-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------aga acgugucugu -CAA-U|CA- G-GGACGAAA 3301 GUUAAGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-GU AAACGAUACC AAC|ac|--- 3421 --gagauugg uag-c-g-aa ac------ca uuauua---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------ga-u c-cu-guc-a ga-aucc--- ---------- ----aagg(- 3661 gaaa-)ccgu uaaguc-UUU GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-AGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-gg 4021 aguaugcg|g cu-UAAUUCG (ACUCAA-CG )CGGG--gaa acucaccaag uu[agg-aug 4081 ugaa-uauga uu-----gac aga(uuaagg u--)------ ucuuu----- cuu-gauu-u 4141 uacaga---- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|ag-gu- ggu-g-caug |guc|gu-uc uua|guucg- u|gga(-gug 4261 a-)uucguc- -uug(uu-aa uu)caguua- ac-gagcgag accuu-aa|- ---------- 4321 ---------- ---[CUU-AC UAAUUaaggu a--cagggg- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ----cuuucu ucggauuguc cuuuguuuca uagguugggu guaugcccuu 4621 ccaagaaacc uguaca---- -uaucacugg uuu-ccag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ugauua cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- ---------- ---------- uaca-gca-c -u-c(----- 5041 gcuccaua)g ggug-a-gga aguu-uaagg caauaa--ca gau------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----cug-ug a|ugcc|cu- 5221 u-aga-uauc uugg-gcugc a-cgcguacu acaau--a-u uaaua----- ---------- 5281 ---------- -----[gcaa caag------ -uaacguaaa guucaucuuu cgggaugaca 5341 ac-------- ---------- ---------- ---------- ---------- ---------- 5401 ----ccu-gg ucc(gaaa-) ggauu----g ggaaau-cuu aucaaa]--- ---------- 5461 -------gau uaa-u-g--- ugac-a-ggg aucgagguu( uguaa---)a uccucgug-a 5521 acgagg-aau u--ccuagua ag-cau-gau (-ucaucau- )gucgu-a-u -uggcuucg- 5581 u-cccugccu uu|ugua-ca caccgcccgu cgcgcg-u-a cc-gac--ug aa-uagagg- 5641 uau-gaau-- uug-augga- cuag-cagu- ag-------- ---------- ---------- 5701 -------(uc ua----)--- ---------- ---------- ---------- ------cu-- 5761 acaacg-cga -gaaa-|auc -aacugaauu uc-ucu-a-u uugu-aggaa cg-agaa-g- 5821 ucguaacaag gu-------- -----c-u-u cguagg(uga a)ccugcaga aggauca--- 5881 --agc----- -------~|| ||| // LOCUS Chl.sp1.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U02040 LOCUS CSU02040 1906 bp rRNA INV 22-NOV-1993 DEFINITION Chloroarachnion sp. 1 CCMP 1408 clone pF57 18S rRNA small subunit. ACCESSION U02040 KEYWORDS . SOURCE Chloroarachnion sp. 1 ORGANISM Chloroarachnion sp. 1 Eucaryotae; Protozoa; Chloroarachnida; Chloroarachnion. REFERENCE 1 (bases 1 to 1906) AUTHORS McFadden,G.I., Gilson,P.R., Hofmann,C.J., Adcock,G.J. and Maier,U.G. TITLE Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1906) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (15-NOV-1993) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC 3052, Australia STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1906 /product="18S rRNA small subunit" source 1..1906 /clone="pF57 (Nm)" /strain="CCMP 1408" /organism="Chloroarachnion sp. 1" BASE COUNT 493 a 424 c 543 g 444 t 2 others ORIGIN BASE COUNT 493 a 424 c 543 g 444 t 3999 others ORIGIN 1 |--------- ----nnnnnn nnn(GGA)UC CU|GCCAGU- A-GUUA-UAU --GCUCGUCU 61 UCAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------gu aaaccac--- ---------- ------uggu ga-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAC-cagu- uau-aauu-- ----uauuug 241 gugg<----- ---------- ---------- ---------- ---------u aug----gac 301 u>ACUCGG-A UACCCGUAG( -U-AACU)CU GUGGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuccaauc -aa|auuucu gc|--CCC-A UCAUCUUGCA C-GUUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA A-|AGAAA-U GAC|GGGU-A A-CGGG|GGA -U-(UGGC-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)RGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCU-G( ---acg--)C 1321 AGGG-A-GGU -|A|GUGACG AAAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------ac ccuaguaua- -gauc(---- ----ugu)ga ucuug-ua-u --agggaau- 1501 ------GCAU ----CCAAUC -UAAA--CCG U-----UG-G G-UGA-CGAC C---->GAUU 1561 GGAG|GG-CA A-GA-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC AG-|CUCCAA 1621 U-AGCAUA|U AUUAG--UGU UGUUG-CGG| UUA--AAACG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaa-agg c-ucgu-aac gcgucu--ga cg-cuaggag uuacug-ggg ---------- 1801 ---------- -----ug-a- ccauca-cca -auggga--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gauugca-uu agcccugcgg 2161 agauauc--- ---------- ---------- --gccccau- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --g-uuaccu ug-acga--a 2461 auuguggugu uc-au-ag-c aaguacgg-- ---------- ---------- ---------- 2521 --------ag uacu-c-uag gcacaa-UAG CAUGGAA|UA -ACAACGcaA -GGACuCCGA 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cg|-gauu 2821 -gc-gcuagc -gc-ucg--- ------g-ga UCG-GA-GGA A--GGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --CGGGGGCG GU|--CGUAU UCCAUUG-CU -AGAG(GU-G AAA---)UUC U-GUGA-C-C 3061 AAUGG-AGG- A-CGAACA-A CAGC(-GAAA )--GC|A--- UCCGUC-CA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CAG U-GGACGAAA 3301 GCUAGGGGA- GCGAACACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GGCAC)CG-U GUGUGG|UCC UA--GCC-GU AAACGAUACC GAC|UA|--- 3421 --ggggu-ug gug-g-a-cg uu--(--cuu cucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----agc-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- caagcu-uuu gGGU|-U|C- CGGGGGGAGU AC--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|GC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CG )CAGG--AAA ACUUACCAGG UC[cgu-aca 4081 uagg-gagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AG-GU- GGU-G-CAUG |GCC|GU-UU CUA|GUUCG- C|GAG(-UUG 4261 A-)CUUGUC- -AGG(UU-AA UU)CCGGUA- AC-GAGCGAG ACCUC-AA|- ---------- 4321 ------(--- --)[CUC--C UAGCGAgcuc a--ucccguc gagcagucgc gggg-aucuc 4381 ga---uacau ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---uuga-ga cccccgcgaa gggaguggau cgguggaggc aauuucaggg 4621 uauggnccag ggccgagcau u--------- ---acgga-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----augag- ca-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGGAG]- --|------- ---------- GACG-Cuu-g -g-u(----- 5041 --agaaa-)A CCAA-G-GGA GUCA-UGAGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACAAU--G-G UGCGA----- ---------- 5281 ---(------ ----)[gcaa ugagaug--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -agggcu-ga acc(gaga-) gguuu----g gcgcgc-cuc guaaa-]--- ---------- 5461 -------ccg cac-c-c--- UGCC-A-GGG AUAGAUCAU( UGCAGUUG)U UGAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAC-GAG (-UCAUCAG- )CUCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA AACCGCCCGU UGcucc-u-g cc-aau---g ga-ucggcu- 5641 gga-gaga-- gug-agaga- u-cg-acca- gg-------- ---------- ---------- 5701 -------(gu aa----)--- ---------- ---------- ---------- ------cc-- 5761 ucgcgu-cgu -agac-|cuc c-cucaaucc gu-cag-u-a ucuaaaggaa gg-agaa-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UAA A)CCUGCAGn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Chl.sp1.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U02075 LOCUS CSU02075 1780 bp rRNA INV 22-NOV-1993 DEFINITION Chloroarachnion sp. 1 CCMP 1408 clones pF58 and pF59 18S rRNA small subunit. ACCESSION U02075 KEYWORDS . SOURCE Chloroarachnion sp. 1 ORGANISM Chloroarachnion sp. 1 Eucaryotae; Protozoa; Chloroarachnida; Chloroarachnion. REFERENCE 1 (bases 1 to 1780) AUTHORS McFadden,G.I., Gilson,P.R., Hofmann,C.J., Adcock,G.J. and Maier,U.G. TITLE Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1780) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (15-NOV-1993) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC 3052, Australia STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1780 /product="18S rRNA small subunit" source 1..1780 /clone="pF58 (Nu), pF59 (Nu)" /strain="CCMP 1408" /organism="Chloroarachnion sp. 1" BASE COUNT 457 a 366 c 472 g 484 t 1 others ORIGIN BASE COUNT 457 a 366 c 472 g 484 t 4124 others ORIGIN 1 |--------- ----nnnnnn nnn(GGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaacuuu ---------- -gu-a-cugu gaa]------ 181 -----|---A CU|G-CAGA- UGGCU-CAUU AAAU-caga- aau-aauu-- ----ucuuug 241 augg<----- ---------- ---------- ---------- ---------u gaaa---auc 301 u>ACACGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aguucauuc -aa|auuucu gc|--CCU-A UCA--GCUAU U-GACGGUA- 1141 GU(-GUAGUG G)ACU-ACCG U-|GGCCG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------au cgugacugu- -gccc(---- ---uuug)ug gc-ag-aguc u-ucgaaau- 1501 ------GAGC ----AAUACG -UAAA--UGC C-----UU-U G-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--UGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauauc-ugg c-cuuu-gca cggacg--gc cc-gccuucg gguuga-gug ---------- 1801 ---------- -----cu-g- gaagug-cag -gucuauauu cugguu-ggc ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- gugcuuuccc 2161 -uuuauu--- ---------- ---------- ---guggcga guau------ ---------- 2221 ---cgcgauc cggauc---- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guuuacuu ug-aaga--a 2461 auucgagugu uc-aa-ag-c aggc------ ---------- ---------- ---------- 2521 -------uua cgcc-g-uga agauug-CAG CAUGGAA|UA -AUGACA-UA -GGACuAUcg 2581 ug-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-uauu 2821 -uu-guuggu -uc-ug---- ------g-ga ccG-UA-GUA A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUG CU|--GCUAU UCCGCGG-NC -AGAG(GU-G AAA---)UUC U-CAGA-U-U 3061 CCCGG-AAG- A-GCAACU-U AUGC(-GAAA )--GC|A--- UUCACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCUU -UAA-U|CA- A-GAACGAAA 3301 GUAGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CU--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-cg uug-(---uu uuauc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aaguc-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGACA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUUCCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uuga-a g-a)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagguu c--aguaucg a--------u gcg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------u cgaugcu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uggag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auc-g -g-a(----- 5041 --uccaa-)A CCGG-U-GGA AGUG-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGUU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[ucau caagcgc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------c 5401 acaccuu-gg cuc(gaga-) ggccu----c gguaau-cuu gaaa--]--- ---------- 5461 -------guc cgu-c-g--- UGUU-A-GGG AUAGAUUAU( UGUAAUUA)U UAGUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AA-CGC-GAG (-UCAUCAA- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGUCC UU|UAUA-CA CACCGCCCGU CGcuac-u-a cc-gau--ug aa-ucauuu- 5641 ggu-gagg-- cuc-acgga- cugu-cgug- cauccuuc-- ---------- ---------- 5701 -------(cu cg--a-)--- ---------- ---------- ---------g uugg-uug-- 5761 ugcuuc-uug -ggaa-|gug -auacaaacc ug-aug-a-u uuag-aggaa gu-aaaa-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Chl.sp1.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03478 LOCUS CSU03478 1907 bp rRNA INV 22-NOV-1993 DEFINITION Chloroarachnion sp. 1 CCMP 242 18S rRNA small subunit. ACCESSION U03478 KEYWORDS . SOURCE Chloroarachnion sp. 1 ORGANISM Chloroarachnion sp. 1 Eucaryotae; Protozoa; Chloroarachnida; Chloroarachnion. REFERENCE 1 (bases 1 to 1907) AUTHORS McFadden,G.I., Gilson,P.R., Hofmann,C.J., Adcock,G.J. and Maier,U.G. TITLE Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1907) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (15-NOV-1993) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC 3052, Australia STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1907 /product="18S rRNA small subunit" source 1..1907 /clone="pF43 (Nm)" /strain="CCMP 242" /organism="Chloroarachnion sp. 1" BASE COUNT 493 a 424 c 546 g 444 t ORIGIN BASE COUNT 493 a 424 c 546 g 444 t 3996 others ORIGIN 1 |--------- ----nnnnnn nnn(GGA)UC CU|GCCAGU- A-GUUA-UAU --GCUCGUCU 61 UCAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------gu aaacc----- ---------- ---ac-uggu ga-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AUAC-cagu- uau-aauu-- ----uauuug 241 gugg<----- ---------- ---------- ---------- ---------u aug----gac 301 u>ACUCGG-A UACCCGUAG( -U-AACU)CU GUGGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuccaauc -aa|auuucu gc|--CCC-A UCAUCUUGCA C-GUUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA A-|AGAAA-U GAC|GGGU-A A-CGGG|GGA -U-(UGGC-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAC)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCU-G( ---acg--)C 1321 AGGG-A-GGU -|A|GUGACG AAAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------ac ccuaguaua- -gauc(---- ----ugu)ga ucuug-ua-u --agggaau- 1501 ------GCAU ----CCAAUC -UAAA--CCG U-----UG-G G-UGA-CGAC C---->GAUU 1561 GGAG|GG-CA A-GA-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC AG-|CUCCAA 1621 U-AGCAUA|U AUUAG--UGU UGUUG-CGG| UUA--AAACG UCCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuaa-agg c-ucgu-aac gcgucu--ga cg-cuaggag uuacug-ggg ---------- 1801 ---------- -----ug-a- ccauca-cca -auggga--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------u- gauugca-uu agcccugcgg 2161 agauauc--- ---------- ---------- --gccccau- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --g-uuaccu ug-acga--a 2461 auuguggugu uc-au-ag-c aaguacgg-- ---------- ---------- ---------- 2521 --------ag uacu-c-uag gcacaa-UAG CAUGGAA|UA -ACAACGcaA -GGACuCCGa 2581 cc-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cg|-gauu 2821 -gc-gcuagc -gc-ucg--- ------g-ga uCG-GA-GGA A--GGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --CGGGGGCG GU|--CGUAU UCCAUUG-CU -AGAG(GU-G AAA---)UUC U-GUGA-C-C 3061 AAUGG-AGG- A-CGAACA-A CAGC(-GAAA )--GC|A--- UCCGUC-CA| GU-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CAG U-GGACGAAA 3301 GCUAGGGGA- GCGAACACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GGCAC)CG-U GUGUAG|UCC UA--GCC-GU AAACGAUACC GAC|UA|--- 3421 --ggggu-ug gug-g-a-cg uu--(--cuu cucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----agc-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- caagcu-uuu gGGU|-U|C- CGGGGGGAGU AC--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|GC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CG )CAGG--AAA ACUUACCAGG UC[cgu-aca 4081 uagg-gagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AG-GU- GGU-G-CAUG |GCC|GU-UU CUA|GUUCG- U|GAG(-UUG 4261 A-)CUUGUC- -AGG(UU-AA UU)CCGGUA- AC-GAGCGAG ACCUC-AA|- ---------- 4321 ------(--- --)[CUC--C UAGCGAgcuc a--ucccguc gagcagucgc gggg-aucuc 4381 ga---uacau ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---uugaaga cccccgcgaa gggaguggau cgguggaggc aauuucaggg 4621 uaugggccag ggccgagcau u--------- ---acgga-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----augag- ca-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CCUAGGAG]- --|------- ---------- GACG-Cuu-g -g-u(----- 5041 --ggaaa-)A CCAA-G-GGA GGCA-UGAGG CGAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACAAU--G-G UGCGA----- ---------- 5281 ---(------ ----)[gcaa ugagaug--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -agggcu-ga acc(gaga-) gguuu----g gcgcgc-cuc guaaa-]--- ---------- 5461 -------ccg cac-c-c--- UGCC-A-GGG AUAGAUCAU( UGCAAUUG)U UGAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA AG-CAU-GAG (-UCAUCAG- )CUCGU-G-C -UGAAUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGcucc-u-g cc-aau---g ga-ucggcu- 5641 gga-gaga-- gug-agaga- u-cg-acca- gg-------- ---------- ---------- 5701 -------(gu aa----)--- ---------- ---------- ---------- ------cc-- 5761 ucgcgu-cgu -agac-|cuc c-cucaaucc gu-cag-u-a ucuaaaggaa gg-agaa-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Chl.sp2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03479 LOCUS CSU03479 1787 bp rRNA INV 22-NOV-1993 DEFINITION Chloroarachnion sp. 2 CCMP 242 18S rRNA small subunit. ACCESSION U03479 KEYWORDS . SOURCE Chloroarachnion sp. 2 ORGANISM Chloroarachnion sp. 2 Eucaryotae; Protozoa; Chloroarachnida; Chloroarachnion. REFERENCE 1 (bases 1 to 1787) AUTHORS McFadden,G.I., Gilson,P.R., Hofmann,C.J., Adcock,G.J. and Maier,U.G. TITLE Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1787) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (15-NOV-1993) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC 3052, Australia STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1787 /product="18S rRNA small subunit" source 1..1787 /clone="pF31 (NU)" /strain="CCMP 242" /organism="Chloroarachnion sp. 2" BASE COUNT 461 a 366 c 472 g 487 t 1 others ORIGIN BASE COUNT 461 a 366 c 472 g 487 t 4117 others ORIGIN 1 |-----augg auccnnnnnn nnn(nnn)nn nn|nnnnGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaacuuu ---------- -gu-a-cugu gaa]------ 181 -----|---A CU|G-CAGA- UGGCU-CAUU AAAU-caga- aau-aauu-- ----ucuuug 241 augg<----- ---------- ---------- ---------- ---------u gaaa---auc 301 u>ACACGG-A UACCCGUAG( -U-AAUU)CU AGAGC-UAA- UACGUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aguucauuc -aa|auuucu gc|--CCU-A UCA--GCUAU U-GACGGUA- 1141 GU(-GUAGUG G)ACU-ACCG U-|GACCG-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-CC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------au cgugacugu- -gccc(---- ---uuug)ug gc-ag-aguc u-ucgaaau- 1501 ------GAGC ----AAUACG -UAAA--UGC C-----UU-U U-CGA-GGGA C---->-AUU 1561 GGAG|GGACA AaGAuC-UGG Uua(CCAgGC aAGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--UGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauauc-ugg c-cuuu-gca cggacg--gc cc-gccuucg gguuga-gug ---------- 1801 ---------- -----cu-g- gaagug-cag -gucuaua-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --uucugguu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------g- gcgugcu-uu cccuuuauug 2161 uggcgag--- ---------- ---------- --uaucgcga uccg------ ---------- 2221 ---gauc--- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guuuacuu ug-aaga--a 2461 auucgagugu uc-aa-ag-c aggcu----- ---------- ---------- ---------- 2521 --------ua cgcc-g-uga agauug-CAG CAUGGAA|UA -AUGACA-UA -GGACuAUcg 2581 ug-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-uauu 2821 -uu-guuggu -uc-ug---- ------g-ga ccG-UA-GUA A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- GGGAC|AAGU ---------- 3001 --UGGGGGUG CU|--GCUAU UCCGCGG-CC -AGAG(GU-G AAA---)UUC U-CAGA-U-U 3061 CCCGG-AAG- A-GCAACU-U AUGC(-GAAA )--GC|A--- UUCACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCUU -UAA-U|CA- A-GAACGAAA 3301 GUAGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CU--ACC-AU AAGCUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-cg uug-(---uu uuauc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aaguc-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGACA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUUCCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uuga-a g-a)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagguu c--aguaucg a--------u gcg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------u cgaugcu--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uggag- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auc-g -g-a(----- 5041 --uccaa-)A CCGG-U-GGA AGUG-CGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG--CCGC A-CGCGUGUU ACACU--G-A CGCAU----- ---------- 5281 ---(------ ----)[ucau caagcgc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------c 5401 acaccuu-gg cuc(gaga-) ggccu----c gguaau-cuu gaaa--]--- ---------- 5461 -------gug cgu-c-g--- UGUU-A-GGG AUAGAUUAU( UGUAAUUA)U UAGUCUUG-A 5521 ACGAGG-AAU U--UCUAGUA AA-CGC-GAG (-UCAUCCA- )CUCGC-A-U -UGAUNACG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGcuac-u-a cc-gau--ug aa-ucauuu- 5641 ggu-gagg-- cuc-acgga- cugu-cgug- cauccuuc-- ---------- ---------- 5701 -------(cu cg--u-)--- ---------- ---------- ---------g uugg-uug-- 5761 ugcuuc-uug -ggaa-|gug -auacaaacc ug-aug-a-u uuag-aggaa gu-aaaa-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGa uccaunn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Chl.rept.1 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X70809 LOCUS CRRRNA 1793 bp DNA PLN 16-NOV-1993 DEFINITION C.reptans gene for 18S ribosomal RNA ACCESSION X70809 KEYWORDS 18S ribosomal RNA; small subunit ribosomal RNA; SSU ribosomal RNA. SOURCE Chlorarachnion reptans ORGANISM Chlorarachnion reptans Eukaryota; Plantae; Thallobionta; Chlorarachnida. REFERENCE 1 (bases 1 to 1793) AUTHORS McFadden,G.I., Gilson,P.R., Hofmann,C.J.B., Adcock,G.J. and Maier,U.G. JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1793) AUTHORS Hofmann,C.J.B. TITLE Direct Submission JOURNAL Submitted (28-JAN-1993) C.J.B. Hofmann, Institute of Biology II, Schaenzlestr 1, 7800 Freiburg, FRG STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1793 /product="18S ribosomal RNA" /note="small subunit" source <1..>1793 /organism="Chlorarachnion reptans" /strain="Grell (Tunisia)" BASE COUNT 444 a 377 c 480 g 492 t ORIGIN BASE COUNT 444 a 377 c 480 g 492 t 4110 others ORIGIN 1 |--------- -------CCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacaacuuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CAGA- UGGCU-CAUU AAAC-cagg- aau-aauu-- ----uuuuug 241 augg<----- ---------- ---------- ---------- ---------u gaca---aac 301 u>ACAUGG-A UAUCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aguucauuc -aa|auuucu gc|--CCA-A UCA--GCUAU U-GACGGUA- 1141 GU(-GUAGUG G)ACU-ACCG U-|GGCUU-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGUGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUUUACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------au gaugacugu- -gccc(---- ---uuug)cg gc-ag-aguu u-uucaaau- 1501 ------GAGU ----GUAAUG -UAAA--UGC C-----UA-U G-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--UGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauauc-ugg c-auu--gcg uugacg--gc cc-gccuucg g-uugg-gug ---------- 1801 ---------- -----cu-g- gauucg-cuu -gccuauuu- ccgguu-ggc g--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------u 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------c- gguuccc-uu uguugggcua 2161 uagggcc--- ---------- ---------- --guuucgcg aucc------ ---------- 2221 ---ggauc-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guuuacuu ug-aaga--a 2461 auucgagugu uc-aa-ag-c aggcu----- ---------- ---------- ---------- 2521 --------ua cgcc-g-uga agauug-CAG CAUGGAA|UG -AUGACA-UA -GAACuGUug 2581 ug-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-uauu 2821 -uu-guuggu -uc-ug---- ------g-ga ccA-CA-GUG A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUG CU|--GCUAU UCCGCGG-CC -AGAG(GU-G AAA---)UUC U-CAGA-U-U 3061 CCCGG-AAG- A-GCAACU-U AUGC(-GAAA )--GC|A--- UUCACC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCUU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug ggg-g-a-cg uug-(---uu uuauc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u u-cc-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aaguc-uuu gGGU|-U|CC CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGACA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUUCCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uuga-a g-a)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GC-|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagcag c--gguaucg a--------u -cg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------u cgaugc---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----c-cgg- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUc-g -g-a(----- 5041 -uuccaa-)g ccgg-u-GGA AGUG-CGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGUU ACACU--G-A UGCGu----- ---------- 5281 ---(------ ----)[ucau caagcuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------c 5401 ccaccuu-gg cuc(gaga-) ggccu----c ggu-au-cuu gaaa--]--- ---------- 5461 -------ucg cau-c-g--- UGCU-A-GGG ACAGACCAU( UGUAAUUU)U UGGUCUCC-A 5521 ACGAGG-AAU U--UCUAGUA AG-CGC-GAG (-UCAUCAA- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGcuac-u-a cc-gau--ug aa-ucauuu- 5641 ggu-gagg-- ucc-acgga- cugu-cgua- cucucuuc-- ---------- ---------- 5701 -------(cu cg--u-)--- ---------- ---------- ---------g uuga-uug-- 5761 uacuuc-uug -ggaa-|gug -gcacgaacc ug-aug-a-u uuag-aggaa gu-aaaa-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS Chl.rept.2 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03477 LOCUS CRU03477 1779 bp rRNA INV 22-NOV-1993 DEFINITION Chloroarachnion reptans CCMP 238 clones pF55 and pF56 18S rRNA small subunit. ACCESSION U03477 KEYWORDS . SOURCE Chloroarachnion reptans ORGANISM Chloroarachnion reptans Eucaryotae; Protozoa; Chloroarachnida; Chloroarachnion. REFERENCE 1 (bases 1 to 1779) AUTHORS McFadden,G.I., Gilson,P.R., Hofmann,C.J., Adcock,G.J. and Maier,U.G. TITLE Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1779) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (15-NOV-1993) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC 3052, Australia STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1779 /product="18S rRNA small subunit" source 1..1779 /clone="pF55 (Nu), pF56 (Nu)" /strain="CCMP 238" /organism="Chloroarachnion reptans" BASE COUNT 441 a 380 c 475 g 483 t ORIGIN BASE COUNT 441 a 380 c 475 g 483 t 4124 others ORIGIN 1 |--------- ----nnnnnn nnn(GGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GACU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au gaacaacuu- ---------- uau-a-cugu gaa]------ 181 -----|---A CU|G-CAGA- UGGCU-CAUU AAAC-caga- aau-aauu-- ----uuuuug 241 augg<----- ---------- ---------- ---------- ---------u gaca---aac 301 u>ACAUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -aguucauuc -aa|auuucu gc|--CCU-A UCA--GCUAU U-GACGGUA- 1141 GU(-GUAGUG G)ACU-ACCG U-|GGCUU-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------au gaugacugu- -gccc(---- ---uuug)cg gc-ag-aguu u-uucaaau- 1501 ------GAGU ----GUAAUG -UAAA--UGC C-----UA-U G-CGA-GUAU C---->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--UGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauauc-ugg c-auu--gcg uugacg--gc cc-gccuucg gguuga-gug ---------- 1801 ---------- -----cu-g- gauucg-cuu -gccuauuuu ccgguu-ggc g--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------u 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------c- gguuccc-uu uguugggcgc 2161 cguuucg--- ---------- ---------- --cgauccgg auc------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guuuacuu ug-aaga--a 2461 auucgagugu uc-aa-ag-c aggcu----- ---------- ---------- ---------- 2521 --------ua cgcc-g-uga agauug-CAG CAUGGAA|UG -AUGACA-UA -GAACuGUua 2581 ug-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-uauu 2821 -uu-guuggu -uc-ug---- ------g-ga ccA-CA-GUG A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGUG CU|--GCUAU UCCGCGG-CC -AGAG(GU-G AAA---)UUC U-CAGA-U-U 3061 CCCGG-AAG- A-GCAACU-U AUGC(-GAAA )--GC|A--- UUCACC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UCUUCUU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug ggg-g-a-cg uug-(---uu uuauc----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----cgac-u u-cc-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aaguc-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGACA- -CCAC-CAGA ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AACUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUUCCAGG UC[cag-aca 4081 uagu-gagga uu-----gac aga(uuga-a g-a)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUC-GA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUagcag c--gguaucg a--------u gcg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------u cgaugcg--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cgcgg- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auc-g -g-a(----- 5041 --uccaa-)G CCGG-U-GGA AGCG-CGAGG CAAUAA--CA UGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGUGUU ACACU--G-A UGCGU----- ---------- 5281 ---(------ ----)[ucau caagcuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------c 5401 ccaccuu-gg cuc(gaga-) ggccu----c gguaau-cuu gaaa--]--- ---------- 5461 -------ucg cau-c-g--- UGCU-A-GGG ACAGACCAU( UGUAAUUU)U UGGUCUCC-A 5521 ACGAGG-AAU U--UCUAGUA AG-CGC-GAG (-UCAUCAA- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGUCC UU|UGUA-CA CACCGCCCGU CGcuac-u-a cc-gau--ug aa-ucauuu- 5641 ggu-gagg-- ucc-acgga- cugu-cgua- cucucuuc-- ---------- ---------- 5701 -------(cu cg--u-)--- ---------- ---------- ---------g uuga-uug-- 5761 uacuuc-uug -ggaa-|gug -gcacgaacc ug-aug-a-u uuag-aggaa gu-aaaa-C- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Chl.rept.3 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U03275 LOCUS CRU03275 1859 bp rRNA INV 22-NOV-1993 DEFINITION Chloroarachnion reptans CCMP 238 clone pF54 18S rRNA small subunit. ACCESSION U03275 KEYWORDS . SOURCE Chloroarachnion reptans ORGANISM Chloroarachnion reptans Eucaryotae; Protozoa; Chloroarachnida; Chloroarachnion. REFERENCE 1 (bases 1 to 1859) AUTHORS McFadden,G.I., Gilson,P.R., Hofmann,C.J., Adcock,G.J. and Maier,U.G. TITLE Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 1859) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (15-NOV-1993) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC 3052, Australia STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1859 /product="18S rRNA small subunit" source 1..1859 /clone="pF54 (Nm)" /strain="CCMP 238" /organism="Chloroarachnion reptans" BASE COUNT 482 a 414 c 520 g 442 t 1 others ORIGIN BASE COUNT 482 a 414 c 520 g 442 t 4045 others ORIGIN 1 |--------- ----nnnnnn nnn(GGA)UC CU|GCCAGU- A-GUCA-UAU --GCUCGUCU 61 UCAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------gu aaaccacu-- ---------- -------ggu ga-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAAU ACAU-cggu- uau-gauu-- ----uccuug 241 gugg<----- ---------- ---------- ---------- ---------u auu----cuc 301 u>ACUCGG-A UAACCGUAG( -U-AACU)CU GUGGC-UAA- UACGUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccaucu -aa|auuucu gc|--CUU-A UCA--ACU-- U-GAUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA U-|GGUCG-U GAC|GGGU-A A-CGGG|GAA -U-(UGGC-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACUAC (UAAG-)GGA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCU-G( ---acg--)C 1321 AGGG-A-GGU -|A|GUGACG AAAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------ac cacggccua- -gacc(---- --gaaca)gg uc-au-ggcu --acggaau- 1501 ------GCAU ----UCAAUC -UAAA--ACG U-----UG-A G-UGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GA-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC AG-|CUCCAA 1621 U-AGCAUA|U ACUAG--UAU UGUUG-CGG| UUA--AAACG UUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuua-aug c-ucug-agg ccgcau--ac cg-ccucgag uuacug-ccg ---------- 1801 ---------- -----uu-g- uaucac-uga ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---ggggaca 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- cacgacu-cc agcucuuugg 2161 aagagua--- ---------- ---------- --gaacccaa cgcg------ ---------- 2221 ---augcagc gguug----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guua-ccu ug-agua--a 2461 auuuuagugu uc-au-ag-c aagca----- ---------- ---------- ---------- 2521 -----ccaug ugcu-u-ugg auacaa-CAG CAUGGGA|UA -ACACCAcaG -GAACuUCGa 2581 cu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cg|-ggua 2821 -gc-guugga -ag-acg--- ------a-gg aCG-AA-GGA A--AGUUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --CGGGGGUA GU|--CGUAU UUCGAUG-CU -AGAG(GU-G AAA---)UUC U-UUGA-C-C 3061 AUCGA-AGG- A-CGCACG-A CAGC(-GAAA )--GC|A--- UCUACC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGUA- GCAAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GGCAC)CG-U -CGUAG|UCC CA--ACC-GU AAACGAUGCC GAC|UA|--- 3421 --ggggu-ug gug-g-a-cg uu--(--cuu aucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----agc-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- caagcu-ucu gGGU|-U|C- CGGGGGGAGU AC--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|GC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CG )CAGG--AAA ACUUACCAGG UC[cgu-aca 4081 uagg-gagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AG-GU- GGU-G-CAUG |GCC|GU-UU CUA|GUUCG- C|GAG(-UUG 4261 A-)CUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAGCGAG ACCCC-AA|- ---------- 4321 ------(--- --)[CCC--C UGUUAAgcua g--acgaggu gcc-ggu--u uaau------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --gccgggca ucagcgc--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uagag- cg-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U UACAGGGG]- --|------- ---------- GACG-Cuu-g -g-u(----- 5041 --gguaa-)A CCAA-G-GGA AGCA-UGGGG CCAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACAAU--G-A UGCAA----- ---------- 5281 ---(------ ----)[ucaa ugaggga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --gcacc-ga gcc(gaga-) ggcua----g gaggau-cuu auaau-]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGAUCUUGaU 5521 NCGAGG-AAU G--CCUAGUA AG-CGC-GAG (-UCAUUAG- )CUCGC-G-C -UGAUUUCG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGcucc-u-g cc-aau---g gg-uagggu- 5641 ggc-aaga-- gga-ucugc- c-ug-accg- auguugua-- ---------- ---------- 5701 -------(gu g-----)--- ---------- ---------- ---------- uac---ac-- 5761 auugcgucga -guca-|ccu c-cucgaacu gc-cuu-a-u cuaa-aggaa gg-agaa-U- 5821 CCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Chl.rep.nm 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X70808 LOCUS CRRRNAN 1867 bp DNA PLN 16-NOV-1993 DEFINITION C.reptans (nucleomorph) gene for 18S ribosomal RNA ACCESSION X70808 KEYWORDS 18S ribosomal RNA; small subunit ribosomal RNA; SSU ribosomal RNA. SOURCE Chlorarachnion reptans ORGANISM Chlorarachnion reptans Eukaryota; Plantae; Thallobionta; Chlorarachnida. REFERENCE 1 (bases 1 to 1867) AUTHORS McFadden,G.I., Gilson,P.R., Hofmann,C.J.B., Adcock,G.J. and Maier,U.G. JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1867) AUTHORS Hofmann,C.J.B. TITLE Direct Submission JOURNAL Submitted (28-JAN-1993) C.J.B. Hofmann, Institute of Biology II, Schaenzlestr 1, 7800 Freiburg, FRG STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>1867 /product="18S ribosomal RNA" /note="small subunit" source <1..>1867 /organism="Chlorarachnion reptans" /isolate="Grell (Tunisia)" BASE COUNT 490 a 415 c 518 g 444 t ORIGIN BASE COUNT 490 a 415 c 518 g 444 t 4036 others ORIGIN 1 |--------- ------ACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUCGUCU 61 UCAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------gu aaaccacu-- ---------- -------ggu ga-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAAU ACAU-cagu- uau-gauu-- ----uccuug 241 gugg<----- ---------- ---------- ---------- ---------u auu----cuc 301 u>ACUCGG-A UAACCGUAG( -U-AACU)CU GUGGC-UAA- UACGUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaccaucu -aa|auuucu gc|--CUU-A UCA--ACU-- U-GAUGGUA- 1141 GG(-GUAGUG G)CCU-ACCA U-|GGUCG-U GAC|GG-U-A A-CGGG|-AA -U-(UGGC-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUAC (UAAG-)GGA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AACUU-ACCC -AAUCCU-G( ---acg--)C 1321 AGGG-A-GGU -|A|GUGACG AAAC-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------ac cacggccua- -gacc(---- --gaaca)gg uc-au-ggcu --acggaau- 1501 ------GCAU ----UCAAUC -UAAA--ACG U-----UG-A G-UGA-GGAA C---->AAUU 1561 GGAG|GG-CA A-GA-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UACC AG-|CUCCAA 1621 U-AGCAUA|U ACUAG--UAU UGUUG-CGG| UUA--AAACG UUCGUAGCCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuua-aug c-ucug-agg ccgcau--ac cg-ccucgag uuacug-ccg ---------- 1801 ---------- -----uu-g- uaucac-uga ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---ggggaca 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- cacgacu-cc agcucuuugg 2161 aagagua--- ---------- ---------- --gaacccaa --cg------ ---------- 2221 ---augcagc gguug----- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --guua-ccu ug-agua--a 2461 auuuuagugu uc-au-ag-c aagca----- ---------- ---------- ---------- 2521 -----ccaug cugu-u-ggg uacaa--CAG CAUGGGA|UA -ACACCAcaG -GAACuUCGa 2581 cu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cg|-ggua 2821 -gc-guugga -ag-acg--- -----aa-gg aCG-AA-GGA A--AGUUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAG|CAGU ---------- 3001 --CGGGGGUA GU|--CGUAU UUCGAUG-CU -AGAG(GU-G AAA---)UUC U-UUGA-C-C 3061 AUCGA-AGG- A-CGCACG-A CAGC(-GAAA )--GC|A--- UCUACC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUGGGGUA- GCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GGCAC)CG-U -CAUAG|UCC CA--ACC-GU AAACGAUGCC GAC|UA|--- 3421 --ggggu-ug gug-g-a-cg uu--(--cuu aucgau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----agc-u c-ca-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- caagcu-ucu gGGU|-U|C- CGGGGGGAGU AC--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|GC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUC (ACUCAA-CG )CAGG--AAA ACUUACCAGG UC[cgu-aca 4081 uagg-gagga uu-----gac aga(uugaua g-c)-----c ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|AG-GU- GGU-G-CAUG |GCC|GU-UU CUA|GUUCG- U|GAG(-UUG 4261 A-)CUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAGCGAG ACCCC-AA|- ---------- 4321 ------(--- --)[CCC--C UGUUAagcua g--acgaggu gcc-ggu--u uaau------ 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --gccgggca ucagcgc--- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----uagag- cg-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U UACAGGGG]- --|------- ---------- GACG-CUU-g -g-u(----- 5041 --gguaa-)A CCAA-G-GGA AGCA-UGGGG CCAUAG--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACAAU--G-A UGCAa----- ---------- 5281 ---(------ ----)[ucaa ugaggga--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --gcacc-ga gcc(gaga-) --cuga---g gaggau-cuu auaau-]--- ---------- 5461 -------cug cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUG)U UGAUCUUG-A 5521 ACGAGG-AAU G--CCUAGUA -G-CGA-GAG (-UCAUUAC- )GUCGC-G-C -UGAUUUCG- 5581 U-CCCUGCCC UU|UGUA-CA CAC-GCCCGU CGcucc-u-g cc-aau---g gg-uagggu- 5641 ggc-aaga-- gga-ucugc- c-ug-accg- auguugua-- ---------- ---------- 5701 -------(gu g-----)--- ---------- ---------- ---------- uac---ac-- 5761 auugcgucga -guca-|ccu c-cucgaacu gc-cuu-a-u cuaa-aggaa gg-agaa-g- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGG AGGAUCA--- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS +UNSORT_EU 5903 bp RNA RNA 16-JAN-1995 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5903 others ORIGIN 1 |......... .......... .......... .......... .-........ .......... 61 .......... .......... .-........ ..|....... |......... .......... 121 .......... .......... .......... .......... .....-.... .......... 181 .......... ..|....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... ...|...... .......... .......... .-........ 1141 .......... .......... .......... ...|...... .......... .......... 1201 .......... .......... .......... .......... ....-..... .....-.... 1261 .......... .........| .......... .......... .......... .......... 1321 .......... .|........ ....-..... .......... .......... .......... 1381 .....|.... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .-----.... .......... .....>.... 1561 .......... .......... .......... .......... .......... ..-|...... 1621 ........|. .......... .........| .......... .......... .......... 1681 .......... .......... .......... .......... .......... .|........ 1741 .......... .-........ .......... .......... ......-... .......... 1801 ..-....... ..-....-.. .......... .......... .......... .......... 1861 .......... .-........ .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... ....-..... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ..---..... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .....|.... .......... 3001 .......... ...--..... .......... .......... .......... .......... 3061 .......... .......... .......... .....|.... .........| ..-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------... .......... ....-.|... .......... 3301 .......... .......... ....------ ---------- ---------- ---------- 3361 ---------. .......... .......... .......... .......... ...|...... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......|.. .......... .......... .......... 3721 .......... -......... ....|..... .......... .......... ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --....|... 4021 ........|. .......... .......-.. .......... .......... .......... 4081 .......... ..-----... .......... .-..--.... .....----- ...-...... 4141 .......... .]........ |......... .......... .......... .......... 4201 .......... ...|...... .......... ....|..... .........- .......... 4261 .-........ .......... .......... ..-....... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... ...-...... .......... .......... 4441 --........ .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... ...------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---....... .|....|... 5221 .......... .......... .......... .......... .......... .......... 5281 ....-..... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .....-..-- ....-.-... .......... .......... .......... 5521 .......... .-........ .......... .-........ .......... .......... 5581 .......... ..|....... .......... .......... .......... .......... 5641 ...-.....- .......... .......... .......... .......... .......... 5701 ......-... .......... .......... .......... .......... ........-. 5761 .......... ......|... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... ........|| ||| // LOCUS A.probosci 5903 bp RNA RNA 11-JAN-191 DEFINITION Apusomonas proboscidea. ACCESSION No information KEYWORDS No information. SOURCE Apusomonas proboscidea. ORGANISM Apusomonas proboscidea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L37037 LOCUS APSRRE 1803 bp rRNA RNA 30-JUN-1995 DEFINITION Apusomonas proboscidea 18S ribosomal RNA (18S rRNA). ACCESSION L37037 KEYWORDS 18S ribosomal RNA. SOURCE Apusomonas proboscidea (strain CCAP 1905/1) (tissue library: ATCC 50315) rRNA. ORGANISM Apusomonas proboscidea Eukaryota; Protozoa. REFERENCE 1 (bases 1 to 1803) AUTHORS Cavalier-Smith,T. and Chao,E.E. TITLE The opalozoan Apusomonas is related to the common ancestor of animals, fungi, and choanoflagellates JOURNAL Unpublished (1995) COMMENT Author-provided taxonomy classification: Apusomonas proboscidea Protozoa; Opalozoa; Heteromitea; Apusomonadida; Apusomonadedae. NCBI gi: 887029 FEATURES Location/Qualifiers source 1..1803 /organism="Apusomonas proboscidea" /strain="CCAP 1905/1" /sequenced_mol="rRNA" /tissue_lib="ATCC 50315" rRNA 1..1803 /gene="18S rRNA" BASE COUNT 486 a 360 c 449 g 507 t 1 others ORIGIN BASE COUNT 486 a 360 c 449 g 507 t 4101 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaugaauuu ---------- -auau-agu- gaa]------ 181 -----|---G CU|G-CGAA- UGGCU-CAUU AAAU-CAGU- UAU-AGUU-- ----UAUUUG 241 AUAG<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AUAUG-ACCC -AAUCCC-G( ---ACA--)C 1321 GGGG-A-GGU -|A|GUGACG AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUGUGGG- -GCUC(---- ---uuc-)GA GU-CU-CACA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC C-----UU-A A-CGA-GGAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-URG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuuggaa c-cugaacgu uuggu-c--c ggacuagccg cgcacu-gac cguucgguuc 1801 uu-cu---gu cu-ggag-ac uccuuguucc uucuuaac-- uga------- -agggcuugg 1861 gggaucuagg a-c------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --UUUUACUU UG-AACA--A 2461 AUUAGAGUGC UC-AA-CG-C AGGCcu---- ---------- ---------- ---------- 2521 --------ac GCCU-U--GA AUACAU-UAG CAUGGAA|UA -ACG-UA-UA -GGACuUUGG 2581 uu-------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---c|-UAUU 2821 -UU-GUUGGU -UU-CA---- --ag----ga CCG-AA-GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UAGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gaa-g-a-cg uu--(auuuu cac------) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uca-g ca-ccuu--- ---------- ----AUGA(- 3661 GAAA-)UCA- CA-GUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGuua cgcgaac--- cucugc---- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------g uucgug---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----gccaa cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-UUU-G -C-G(----- 5041 -ugcuuua)A CCAA-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UACGU----- ---------- 5281 ---(------ ----)[ucag caaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 acaaccu-ug acc(guua-) ggucu----g gguaaucuua aaaa--]--- ---------- 5461 -------GCG UAU-C-G--- UGAU-G-GGG AUAGAUCUU( UGUAAUUU)U GGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AA-CGC-GAG (-UCAUCAG- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUCC- 5641 GGU-GAGC-- uc-uucgg-a cugacugg-- gucc-uucug ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- caga-agc-- 5761 ccgugu-cg- -ggaa-|guu -gcgcuaacc uu-AUC-A-U UUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS P.balamuth 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L23799 LOCUS PMHRRSS 2741 bp ds-DNA INV 22-MAR-1994 DEFINITION Phreatamoeba balamuthi ribosomal RNA small subunit gene. ACCESSION L23799 KEYWORDS protist; ribosomal RNA small subunit. SOURCE Phreatamoeba balamuthi DNA. ORGANISM Phreatamoeba balamuthi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; Rhizopodea; Lobosea; Gymnamoebia. REFERENCE 1 (bases 1 to 2741) AUTHORS Hinkle,G., Leipe,D.D., Nerad,T.A. and Sogin,M.L. TITLE The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi JOURNAL Unpublished (1993) STANDARD full automatic COMMENT NCBI gi: 463171 FEATURES Location/Qualifiers rRNA 1..2741 /product="ribosomal RNA small subunit" source 1..2741 /organism="Phreatamoeba balamuthi" /sequenced_mol="DNA" BASE COUNT 715 a 547 c 738 g 724 t 17 others ORIGIN BASE COUNT 715 a 547 c 738 g 724 t 3179 others ORIGIN 1 |--------- -----AACCC GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUGU 61 UAAA|-GAUU AA-GCCAUGC A-UGCCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac aaacuau-uc ---------- -uu-a-uggu aaa]------ 181 -----|---A CU|G-CGGA- CGGCU-CCAU AGAU-cagu- aau-aguu-- ----cguuca 241 guga<----- ---------- ---------- ---------- ---------- uuugaaaaag 301 u>ACUUGG-A UAACCCUGU( -U-AAUU)GU AGAG-CUAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -cacugu-uc -ga|auuccu ga|--CCU-A UCA--ACUC- --GAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GCU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACUC -CCUGCC-G( ---aca--)C 1321 GGCG-A-GGU -|A|GUGACG ACAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CAAGGAAAA- ccgcc(---- ---uuu-)gg uggUU-UUCC A-UUGGAAU- 1501 ------GAgc ----agaau- -ucaa-a-cc c-----cu-c ugcaa-guaa c---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 G-AGUGUA|U ACUAA--AGC UGUUG-CGG| UUA--AAACG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aauuccaaca c-ccgg-uuu caaguu--ga au-ggaaaga agggua-uau ---------- 1801 ---------- -----ua-g- uauuua-grr -ggagcaauc cuuuua-agu au-------- 1861 ugruguauca g-uucaccgu uuaacuccgg ggaaggcuau ccacucuaau gccuu----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------auuc ccgccagggc ucuuaauuga gucuuggaua uaccacccgg accgauaagg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------a- auggggg-ga auaaggacua 2161 aagguuu--- ---------- ---------- --accuugaa caaa------ ---------- 2221 ---uuagagu gauucaggca ggcuuuuuua agcccuugaa uacauuagca ugggacaaac 2281 acaucccaaa aacaaccugg gucggguggc accgggguug gagguuugau augagaggag 2341 auuaugagua ggugguuaug auca------ ---------- ---------- ---------- 2401 ---------- ---------- ---------- ----uuugug caaucaaaac uuauaguagc 2461 cucaa-uggu uc-cguuugg uuuuccuga- -------g-- ---------- -ggggcucgg 2521 acuuggucau cugu-a-ggu auuucagggg ugaugggcuc cggucuguua -uuccUgagg 2581 uauu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------cgga ugauugaggg gucuaaccag caaugguuau auuaugaguu uguaugaaug 2761 auuaugauur cucuuruagu cgayaa---- --agacuuca cgugucgggc uuucagucuu 2821 -ag-gaccau -cc-auuaag acucagucg- uuuugguugu a--gaaaugc aa---ucgaa 2881 acguuaaacc aaauaaua-- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGC ---------- 3001 --CGGGGUGG UU|--AAUAC UUCCGUG-CU -AGGG(GU-G AAA---)UCC U-AUGA-U-U 3061 ACGGA-AAG- A-UUAACU-A GUGC(-GAAA )--GC|A--- UUCCAC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU CA--ACC-AU AAACUAUGCC GAC|CA|--- 3421 --gagau-cg gaa-g-a--- ----(----- ---------) cgcuguccua gaaggacgc- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- --guggc--u c-cu-ccg-g ca-ccuuu-- ---------- ----gaGA(- 3661 GAAA-)UCau ugaGUG-ucw gGGC|-U|U- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCWC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUUACCAGG UC[cag-aca 4081 guag-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cua-gauu-u 4141 gcuggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUCG- U|GGU(-UUG 4261 A-)RUUGUC- -UGU(GUCAA UU)CCGCUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAAugu u--gggcag- ------aggc uuug-guuug 4381 auu--aaguu u---cuuuua ucggg(gcaa )cu-cgguag aggggaugga -gucuuauca 4441 --aacucu-- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 -----aguuc aarccauucu ccucgacguu ugauuggggu auuuguuauc ggg(gcaa)c 4621 ucgguuauaa guauuucagu cuuaugcaaa ga---aug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gaccaa cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-AUU-U -G-C(----- 5041 -uccca--)G CAAA-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-CGA-UGCC CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUGGG----- ---------- 5281 ---(------ ----)[ugaa uuagcau--- ---------- -----gug-- uacaccccac 5341 -uuuuuccuu guucuucuc( -gaaa)ggga ggggcaggga ggaggcgggg auaaauguac 5401 cuacccu-ga guc(gaaa-) gacuum--ag guaac--cug cugaaa]--- ---------- 5461 -------CCU AAU-C-G--- UGAU-G-GGG AUAGGCCUU( UGCAAUUA)U UGGCCUUA-A 5521 ACGAGG-AAU U--CCUAGUA GG-CGC-UAG (-UCAUCAG- )CUUGC-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG GA-UGAUCC- 5641 GGU-GAAG-- au-aacgg-a uguguaaa-- guauaggacc cuuggggg-- ---------- 5701 -------(cu ug----)--- ---------- ---------- ----cucucu uggg-uuu-- 5761 -uauauuuuc -cagaa|guu -aucuaaacc uu-AUU-A-U CUAG-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C YGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGCUU~~~ ~~~~~~~~|| ||| // LOCUS B.mandrill 5903 bp RNA RNA 11-JAN-191 DEFINITION Balamuthia mandrillaris. ACCESSION No information KEYWORDS No information. SOURCE Balamuthia mandrillaris. ORGANISM Balamuthia mandrillaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: AF019071 BASE COUNT 526 a 414 c 541 g 536 t 3886 others ORIGIN 1 |--------- -----CGACU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcuu--uu ---------- -au-a-cggc gag]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ------uucc uuuauuuuac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUCG-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAU)GGC UACC-ACUUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -UCUu(---- --gcaaa)aA GA-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC C-----UU-A A-CGA-GUAA C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc-gga g-uguu-ugg cagggc--u- gg-uccgccg aaauag-gug ---------- 1801 ---------- ------a-g- caccgu-c-- -cugcccgcu ccucuu-guc cg-------- 1861 gguucucauc c-cugcuauu cacuuagugg ggaaccaaag guucuguucc cgccc----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------ucgg guggggcagg acuggaggcc cggacc---- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACUU UG-AAAA--A 2461 AUUAGAGUGU UC-AA-AG-C AGACaaguc- -------a-- ---------- -aaac----- 2521 --------ug ucau-u--GA AUAUAU-UAG CAUGGGA|UA -AUGGAA-UA -AGc---cuc 2581 ucug------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --cu|-uauu 2821 -uU-GUUGGU -UU-CU---- -----aagu- agg--GAGAA A--UGAUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACGAUGCC GAC|CA|--- 3421 --gcgau-ug gga-g-a-cg u---(----- ---------) -uacacaugc ugcccaaaag 3481 gcagcaugga ggac------ ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------u c-cc-cca-g -c-agcuu-- ---------- ----guGA(- 3661 GAAA-)UCAU -AAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaua g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUca u--gccaauc cugcuauuca aaac-cagg- 4381 ggg--ugagc g---cggugc ggucggcucc aau-cuucgg guuggggucg -guu------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ----cgugcc ccuugccuuc uggcgguugg auugguag-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aaguA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACA-Auc-g -g-u(----- 5041 --gauua-)g ccga-G-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UUAAU----- ---------- 5281 ---(------ ----)[ucaa cgagugc--- ---------- -----c---- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -acaccu-ug gcc(gaaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------uuu aau-c-g--- UGAU-G-GGG AUAGAUUAU( UGUAAUUG)U UAAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaaa-- ucu-ucgga- gcuc-gacc- ucuc-----c gcga-uccgg ---------- 5701 -------(gc aa----)cug gg-ucgug-- ---------- ---------- ---------- 5761 -agguu-ggg -caaa-|guc -gauuaaauc uu-acc-a-u uuag-aggaa gg-agAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --GGA~~~~~ ~~~~~~~~|| ||| // LOCUS Symbio.sp. 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M88509 LOCUS SYM18SRRN 1792 bp ss-rRNA RNA 09-APR-1992 DEFINITION Symbiodinium sp. 18S ribosomal RNA. ACCESSION M88509 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Symbiodinium sp. rRNA. ORGANISM Symbiodinium sp. Eukaryota; Chromophycota; Dinophyceae; Dinophycidae; Zooxanthellales; Zooxanthellaceae. REFERENCE 1 (bases 1 to 1792) AUTHORS Rowan,R. and Powers,D.A. TITLE Ribosomal RNA sequences and the diversity of symbiotic dinoflagelaates (zooxanthellae) JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3639-3643 (1992) STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1792 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial primer_bind 1..29 /note="PCR primer at the 5' end" /gene="18S rRNA" primer_bind 1762..1792 /note="PCR primer at the 3' end" /gene="18S rRNA" BASE COUNT 471 a 351 c 472 g 498 t ORIGIN BASE COUNT 471 a 351 c 472 g 498 t 4111 others ORIGIN 1 |--------- ---------- GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-CA GU|------- |-------(- ---)[----- 121 ---------- --------au aagcag--uc ---------- -aa-a-uggu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAG-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------- ---uugcugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcgucauuc -aa|guuucu ga|--CCU-A UCA--GCUUC C-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGCAA-U GAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-UGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AGAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- --GCA(---- ---ucca)UG U--CU-UGUA A-UUGGAAU- 1501 ------GAAC ----AGAAUU -UAAA--UCU C-----UU-U A-UGA-GUAU C---->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuucu--g u-ugag-gau gaccgg--uc cg-cccucug ggugag-uau ---------- 1801 ---------- -----cu-g- gcucag-ccu -ugacaucuu ucu------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ------g-aa gaacgua-uc 2161 ugcacuu--- ---------- ---------- ---gacugug uggu------ ---------- 2221 ----gcggaa uuugggac-- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --AUUUACCU UG-AGGA--A 2461 AUUAGAGUGU UU-CA-AG-C AAGCGc---- ---------- ---------- ---------- 2521 --------ac GCUU-U--GA AUACAU-UAG CAUGGAA|UA -AUAAGA-UA -GGA---ccu 2581 -cag------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----agag- cug--UGGUA A--UGGUUGA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CGUAU UUAACUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGUUA-AAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UCU UA--ACC-AU AAACCAUGCC AAC|UA|--- 3421 --gagau-ug gag-g-u-cg uu--(---ac uugcau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-uu-uca-g ca-ccuu--- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cag-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuua c--auguaac ---------- --cu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- guuacaug-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ggcAA- CU-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Uug-u -g-u(----- 5041 --gucua-)a cgca-A-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCUGC A-CGCGCGCU ACACU--G-A UGCGC----- ---------- 5281 ---(------ ----)[ucaa caaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 ucgaucu-ug ccc(gaaa-) ugg-cu---g gguaau-cuu uuuaaa]--- ---------- 5461 -------aug cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAG (-UCAUCAG- )CUCGU-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AG-UGAUcc- 5641 ggu-gaau-- aau-ucgga- cuga-cgca- gu-gcucag- ---------- ---------- 5701 -------(cu u-----)--- ---------- ---------- ---------- -cug-gac-- 5761 guugug-uug -gaaa-|guu -ucaugaacc uu-auc-a-c uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUC---- 5881 -----~~~~~ ~~~~~~~~|| ||| // LOCUS G.nostochi 5903 bp RNA RNA 11-JAN-191 DEFINITION Glaucocystis nostochinearum. ACCESSION No information KEYWORDS No information. SOURCE Glaucocystis nostochinearum. ORGANISM Glaucocystis nostochinearum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X70803 BASE COUNT 470 a 350 c 456 g 503 t 4124 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaacuuu ---------- -au-a-cugu gaa]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 augg<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUGU-U AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-CGCC(U-G AGAGAU)GGC GACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCGC-A( ---acu--)C 1321 GCGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACACG- -GCUU(---- ----ucu)AA GU-CG-UGUA A-UUGGAAU- 1501 ------GAGA ----ACAAUU -UAAA--UCC C-----UU-A U-CGA-GGAU C---->AAUU 1561 GGAG|GG-AA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc-ggg g-cggg-gcg gcuggu--c- ----ugccuu au--gg-gug ---------- 1801 ---------- -----ug-u- acuagu-cgu -gccc---gu ccuucc---- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ggauggc--- --uucugcuc 2161 (uuaauu--- ---------- ---------- ---)gagugg gagu------ ---------- 2221 -----cagac --------ac ggauc----- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- --CUUUACUU UG-AGUA--A 2461 AUUGGAGUGU UU-AA-AG-C AGGCC----- ---------- ---------- ---------- 2521 ------UUGC GCUC-U-GAA CAUUAU-UAG CAUGGAA|UA -AUAAAA-UA -GGA-----c 2581 cuug------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- guuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- ------agg- aucg-agGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--CAUAU UCCGUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UACGG-AAG- A-UGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UG|--- 3421 --cggau-ca gag-g-a-ug uu--(----u uuuucac--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cu-uug-g -c-acgcu-- ---------- ----auGA(- 3661 GAAA-)UCa- -aAGUU-uuu gGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uu-----gac aga(uugaga g-c)------ ucuuu----- cuu-gauu-c 4141 uauggg---- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUua c--gcgaaca ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------ug uucgcg---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gucaa- cu-------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------U CUUAGAGG]- --|------- ---------- GACU-Auu-u -g-u(----- 5041 --gucua-)a ugaa-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAAU----- ---------- 5281 ---(------ ----)[ucaa cgagcuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ug acc(gaua-) ggucu----g gguaau-cuu uugaaa]--- ---------- 5461 -------uuu cau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUCC-U-A CC-GAU--UG AA-UGGUcc- 5641 ggu-gaaa-- uuu-ucgga- ucgu-ggca- acgcacccgg ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- --------cc gagg-gcc-- 5761 gauguc-cgg -agaa-|guu -aauuaaacc uu-auc-a-u uuag-AGGAA GG-AGAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGn(Unn n)nnnnnnnn nnnnnnn--- 5881 --nnn----- -------~|| ||| // LOCUS bas.sym.Cr 5903 bp RNA RNA 11-JAN-191 DEFINITION Basidiomycete symbiont of Cyphomyrmex rimosa. ACCESSION No information KEYWORDS No information. SOURCE Basidiomycete symbiont of Cyphomyrmex rimosa. ORGANISM Basidiomycete symbiont of Cyphomyrmex rimosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U09536 LOCUS BSU09536 1808 bp DNA PLN 25-JAN-1995 DEFINITION Basidiomycete symbiont of Cyphomyrmex rimosa 16S-like small subunit rRNA gene. ACCESSION U09536 KEYWORDS . SOURCE Basidiomycete symbiont of Cyphomyrmex rimosa. ORGANISM Basidiomycete symbiont of Cyphomyrmex rimosa Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Metazoa/Eumycota group; Eumycota; Basidiomycotina; Hymenomycetes; Agaricales; mitosporic Agaricales. REFERENCE 1 (bases 1 to 1808) AUTHORS Hinkle,G., Wetterer,J.W., Schultz,T.R. and Sogin,M.L. TITLE Phylogeny of the attine ant fungi based on analysis of small subunit ribosomal RNA gene sequence JOURNAL Science 266, 1695-1697 (1994) STANDARD full automatic REFERENCE 2 (bases 1 to 1808) AUTHORS Sogin,M.L. TITLE Direct Submission JOURNAL Submitted (10-MAY-1994) Mitchell L. Sogin, Center for Molecular Evolution, Marine Biological Laboratory, Woods Hole, MA 02543, USA STANDARD full automatic COMMENT NCBI gi: 633734 FEATURES Location/Qualifiers source 1..1808 /organism="Basidiomycete symbiont of Cyphomyrmex rimosa" rRNA 1..1808 /note="16S-like rRNA" /product="small subunit ribosomal RNA" BASE COUNT 476 a 367 c 479 g 482 t 4 others ORIGIN BASE COUNT 476 a 367 c 479 g 482 t 4099 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaauuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u aucu---ugc 301 u>ACAYGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--acuUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUauagg- -gcuc(---- ---uuuu)gg gu-cu-uauA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU YGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuc-aga ccugg-cugg guggu----c c-gcu---ua acggcgu--- ---------- 1801 ---------- ---g-uacu- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- --gcucggcu 1921 gggccuuacu ucuuggugag ccagcgugc- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- c-c-u-uu-- ---a------ 2161 -u-----ug- ---------- ---------- -gug-ugcg- uugg------ ---------- 2221 ---g------ ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ------gaac caggacu--- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- --------UU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCC u--------- ---------- ---------- ---------- 2521 -augc--cc- -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUAAaa-ua -gga---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------u --UC|-UAUU 2821 -UU-GUUGGU -UU------- cuagagucgc c------GUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--GGUAU UGAGUCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUC-AAG- A-CCAACU-A UUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gau-g-a-cc uc--(--aaa uuugau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gug-u c-au-uca-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --U-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uaac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAauag-cc a--ggccggc ---------u uu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 --------cg c--------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -----uggu- --cgccgg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -------CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-guc-a -g-y(----- 5041 --gucua-)g cuga-c-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACAAU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgagyuu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 uucaccu-ug acc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU A--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGgcuu- 5641 agu-gagg-u cu-ccgga-u ugg-cguu-g ggg-agccg- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------cg gcac-uccu- 5761 uugc----ug -agaa-|gcu -gaccaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----UUU-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --AGC----- -----~~~|| ||| // LOCUS Asc.apis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M83264 LOCUS AOSRR18S 1736 bp ss-rRNA RNA 02-JAN-1992 DEFINITION Ascosphaera apis 18S ribosomal RNA. ACCESSION M83264 KEYWORDS 18S ribosomal RNA. SOURCE Ascosphaera apis (library: University of California Berkeley collection 78-018) mycelia, young rRNA. ORGANISM Ascosphaera apis Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Ascosphaerales; Ascosphaeraceae. REFERENCE 1 (bases 1 to 1736) AUTHORS Berbee,M.L. and Taylor,J.W. TITLE Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence JOURNAL Mol. Biol. Evol. (1992) In press STANDARD full staff_review FEATURES Location/Qualifiers rRNA 1..1736 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /partial BASE COUNT 449 a 363 c 471 g 453 t ORIGIN BASE COUNT 449 a 363 c 471 g 453 t 4167 others ORIGIN 1 |~~~~~~~~~ ~~~~~nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaccaa-ucu ---------- -gu-acugag aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-uguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu--uuac 301 u>ACAUGG-A UACCCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUGG-C AAC|GGGU-A A-CGGG|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aua--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC UGAUACAGG- -GCUC(---- ---uuuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCC CUU---AA-C GA-GUAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aaccuu-ggg ucugg-cu-g gccgg--u-c c-gc-(cuca cc-)-gcg-- ---------- 1801 ---------- --ug-uacug g-u----ccg gcuggacc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----gg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--ccua--u ggcc(-uuca 2161 cu----)gg- ---------- ---------- -cuguaggg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCc ---------- ---------- ---------- ---------- 2521 ---UUUGCUC -GGAUA-CAU -UAGCAUGG- AA-----|UA -AUAGAA-UA -GGA---cgu 2581 gugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --CGGGGGCG UC|--AGUAU UCGGCUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UGCUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUCGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CAg U-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-g-gc uu--(-uaac uaau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUu-uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--AAA -UUG|AC-GG -AA-GGGCA- -CCAC-AAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --C-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 aaau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauc-uuuug ga-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCcc g--gucgac- ---------g uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------gucg gcugc--u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --ucuuaa)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ucag cgaguac--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 aucaccu-ug gcc(gaga-) ggucu----g gguaau-cuu guuaaa]--- ---------- 5461 -------ccc ugu-c-g--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU G--CCUAGUA GG-CAC-AAG (-UCAUCAG- )CUUGU-G-C -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCuc- 5641 agu-gagg-c cu-ucgga-c ugg-cuca-g gga-ggcug- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- --------cg acca-cccg- 5761 ggg----ccg -gaaa-|guu -ggucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Rosette.ag 5903 bp RNA RNA 11-JAN-191 DEFINITION rosette agent. ACCESSION No information KEYWORDS No information. SOURCE rosette agent. ORGANISM rosette agent. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L29455 BASE COUNT 503 a 331 c 457 g 517 t 4095 others ORIGIN 1 |~~~~~~~~~ ~~~~~AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaaucu ---------- -auac-ugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u accu---uac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 AG(-GUAGUG G)CUU-ACCA u-|GGUUG-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAG-- -GGCU(---- --uuuua)AG UC--U-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--AAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-ggg au-aagcuug uuggg----c -cgcc--gcg a---ggug-- ---------- 1801 ---------- -uuugccccg a------cga ggguaucc-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- -----uuccu cucga---aa 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uu g--gcgug-u gcgc(-uuaa 2161 uu----)ga- ---------- ---------- -gugugcgu- cgag------ ---------- 2221 ---------- --uuugggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCU ---------- ---------- ---------- ---------- 2521 ---auCGCUU -GAAUA-UUU -cAGCAUGG- AA-----|UA -AUGGAA-UA -GGA---cgu 2581 uggu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --uc|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----agga- ccg--aagua a--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|UAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUN ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCC UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ug gug-g-a-ug uu--(--aau ucuau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-uca-g ca-ccuu--- ---------- ----aUGA(- 3661 GAAA-)UCA- -AAGUC-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 CCAGUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaguug ---cgcgauu ---------u ccg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------aauc gccug--u-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACU-auu-g -g-u(----- 5041 --guuua-)a ccaa-u-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UAAAG----- ---------- 5281 ---(------ ----)[Gcaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -auaaccugc acc(ggaa-) ggugu----g gguaau-cuu uugaaa]--- ---------- 5461 -------cuu uau-c-g--- UGCU-G-GGG AUAGAUCUU( UGCAAUUU)U CGAUCUUA-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gagg-u cu-ucgga-u ugg-cccu-g uaccgcug-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -------cag cagu-gagg- 5761 cug----ccg -aaaa-|guu -gaucaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uua----- -----~~~|| ||| // LOCUS Pso.haecke 5903 bp RNA RNA 11-JAN-191 DEFINITION Psorospermium haeckelii. ACCESSION No information KEYWORDS No information. SOURCE Psorospermium haeckelii. ORGANISM Psorospermium haeckelii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U33180 BASE COUNT 494 a 329 c 443 g 484 t 4153 others ORIGIN 1 |~~~~~~~~~ ~~~~nnnnnn nnn(nnn)nn nn|nnnAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AU GU|------- |-------(- ---)[----- 121 ---------- --------au aaauuauuuu ---------- ---ac-gaug ag-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-cguu-- ----uauuug 241 a-au<----- ---------- ---------- ---------- -------aug accc---uac 301 u>ACUGG--A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUA---- ----(----) 361 ---------- -------(-- --)--|---- --<-ua---- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---acccau- --ga(----- --------ag ccugcu---- 601 ---------- ---------- ---)uua-ag ggcc--|GUA UUUAUUAGA- -UACA-AA-- 661 GCCAAU---- ---------- ----cggg(- ---------- ---------- ---------- 721 ------gcaa -)cccgu--- ---------- ---------- ------UAGG UG--AUUCAU 781 A-AUAACUG- -gca------ ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|AAA-UCGC --AU-GCU(- ---uuca--- ---------- -------)AG CG--A-CGAU 1081 ---------> -gauucacuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA u-|GGUUA-U AAC|GGGU-G A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGUGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (CAAG-)GAA 1261 -GGUAGC-A- ---------| GGC-GC-GC- AAAUU-GCCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUCCAG-- -GGCC(---- --uuuug)GG UC--U-UGUA A-UUGGAAU- 1501 ------GAGU ----ACGAUU -UAAA--CCC UUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)AUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUGA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-gga uc-gg-ccuu uuccg--c-g a-gcu(-aaa c--)gguu-- ---------- 1801 ---------- --cg-ucggg a------aag gacgaucu-u c-uuu----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------c ucgaa----g 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc c--ucuuc-u gcuc(-uuaa 2161 uu----)ga- ---------- ---------- -gugggaga- ggaa------ ---------- 2221 ---gu----- -----cgaga c--------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GUU UACUGUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAAGCG u--------- ---------- ---------- ---------- 2521 ---aaCGCAU -GAAUA-UUG -cAGCAUGG- AA-----|UA -AUGGAA-UA -AGA---uca 2581 cgg------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ucu|-UUUU 2821 -UC-GUUGGU -UU-AU---- -----gaga- ucg--agauc a--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -AGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAGCU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCGU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg gug-g-a-cg uc--(--aau uacgu----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ca-ucg-g ua-ccuu--- ---------- ----gUGA(- 3661 GAAA-)UCA- -AAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCAGG UC[cgg-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUaguag g--cugauu- ---------u acg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------aauc aag--uuc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ga-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG---]- --|------- ---------- GACA-auu-g -g-u(----- 5041 --uuuca-)a ccaa-u-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGG-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UAAAG----- ---------- 5281 ---(------ ----)[Ucag cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------u 5401 caacccu-uu gcc(ggaa-) ggcau----g gguaau-cuu augaaa]--- ---------- 5461 -------cuu uau-c-g--- UGAC-C-GGG GUAGAUCAU( UGCAAUUA)U UGGUCUUG-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGC-GAA (-UCAUCAG- )UUCGC-G-U -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gagg-u cu-ucgga-a cga-cgac-g aaucau---- ---------- ---------- 5701 -------(ga aa----)--- ---------- ---------- --------ua cugc-cuag- 5761 ucg----ucg -caaa-|guu -ggacgaacu cg-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C Cnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn----- -----~~~|| ||| // LOCUS Ich.hoferi 5903 bp RNA RNA 11-JAN-191 DEFINITION Ichthyophonus hoferi. ACCESSION No information KEYWORDS No information. SOURCE Ichthyophonus hoferi. ORGANISM Ichthyophonus hoferi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U25637 ID ICHTHYO authorin_confidential; DNA; UNA; 1808 BP. Xx DT 24-APR-1995 (created by authorin) XX DE Ichthyophonus hoferi. XX KW . XX OS Ichthyophonus hoferi OC . XX RN [1] (bases 1-1808) RA Rand T.G., Goggin C., Jamieson A., Munholland J., Cawthorn R.J., Plourde RA S.M., Ragan M.A.; RT "The earliest animal lineage includes the "fungus-like protists" RT Dermocystidium and Ichthyophonus"; RL Unpublished XX RN [2] (bases 1-1808) RA Ragan M. A.; RT ; RL Submitted () on tape to the RL EMBL Data Library by: RA Ragan M. A.; RL NRC Institute for Marine Biosciences RL 1411 Oxford Street RL Halifax RL Nova Scotia RL Canada RL B3H 3Z1 ** Phone: 902-426-1674 ** Fax: 902-426-9413 ** Email: mark@imb.Lan.nrc.ca XX CC *source: clone= 1-17; XX ** Authorin Release 1.2 ** Author requested hold until 30-SEP-1995 FH Key Location/Qualifiers FT misc_feature 1..11 FT /*tag= a FT /evidence= EXPERIMENTAL FT /label= PCR_primer FT /citation= ([1]) FT misc_feature 1772..1808 FT /*tag= b FT /evidence= EXPERIMENTAL FT /label= PCR_primer FT /citation= ([1]) BASE COUNT 510 a 336 c 455 g 507 t 4095 others ORIGIN 1 |~~~~~~~~~ ~~~~CAACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaacuuu ---------- -auac-ugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auaa<----- ---------- ---------- ---------- ---------u acc----uac 301 u>ACUUGG-A UAACCGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gauucauuc -aa|aucucu gc|--CCU-A UCA--ACUUU -CGGUGGUA- 1141 AG(-GUAUUG G)CUU-ACCA u-|GGUUC-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCC|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACUUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAG-- -GAUC(---- -uuuaaa)GG UC--U-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--CCC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuu-gga aa-uu-gcuu acugg--u-c g-gcc(-gca a--)gguc-- ---------- 1801 ---------- --ug-uacug g-u---acgg caguuucu-u c-uuc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc gaagg----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------c a--guggg-u gcuc(-uuaa 2161 uu----)ga- ---------- ---------- -gugucuac- uga------- ---------- 2221 ---------- ---guucggg ac-------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUGUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCU ---------- ---------- ---------- ---------- 2521 ---uaUGCUU -GAAUA-UUG -cAGCAUGG- AA-----|UA -AUGGAA-UA -GGA---ucc 2581 cgau------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -cu-|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----aaga- ucg--agaua a--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --UGGGGGCA UU|--AAUAU UUAAUUG-UC -AGAG(GU-G GAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-UUAACU-U CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCGU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CA-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-ua gug-g-a-cg uu--(--uaa uaau-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-a c-ca-uua-g ca-ccuu--- ---------- ----aUGA(- 3661 GAAA-)UCA- -AAGUU-UUU GGGU|-U|C- CGGGGGGAGU AU--GG-UC( --CCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCAGG UC[cgg-aca 4081 uagg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-------- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |CCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUaguua c--augauu- ---------u ucg------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ------aauc aug--ggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGGGG---]- --|------- ---------- GACU-auu-g -g-u(----- 5041 --guaua-)a ucaa-u-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A UGAGG----- ---------- 5281 ---(------ ----)[Ucaa cgaguau--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -cauccu-uc acc(ggaa-) ggugc----g gguaau-cuu uugaaa]--- ---------- 5461 -------ccu uau-c-g--- UGAU-G-GGG AUAGAUCAU( UGCAAUUA)U UGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gagg-u cc-ucgga-c ugg-uaca-g cgcgug---- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------- caca-uacu- 5761 gcg----ccg -ggaa-|guu -gaacaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCU--- 5881 --aguaguag uaggg~~~|| ||| // LOCUS B.santanas 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M94337 LOCUS BLSRGEA 1759 bp ds-DNA PLN 12-JAN-1993 DEFINITION Boletus santanas 18S ribosomal RNA (18S rRNA) gene, complete sequence. ACCESSION M94337 KEYWORDS 18S ribosomal RNA. SOURCE Boletus satanas (library: collection number TDB-1000) basidiocarp DNA. ORGANISM Boletus satanas Eukaryota; Fungi; Eumycota; Basidiomycotina; Hymenomycetes; Agaricales; Boletaceae. REFERENCE 1 (bases 1 to 1759) AUTHORS Bruns,T.D., Vilgalys,R., Barns,S.M., Gonzalez,D., Hibbett,D.S., Lane,D.J., Simon,L., Stickel,S., Szaro,T.M., Weisburg,W.G. and Sogin,M.L. TITLE Evolutionary relationships within the Fungi: analyses of nuclear small subunit rRNA sequences JOURNAL Mol. Phylog. Evol. (1992) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1759 /product="18S ribosomal RNA" /gene="18S rRNA" /citation=[1] /note="18S nuclear ribosomal rDNA sequenced between PCR primers Ns1 and Ns8, as defined by White et al. in PCR Protocols (1990); putative" BASE COUNT 449 a 355 c 483 g 472 t ORIGIN BASE COUNT 449 a 355 c 483 g 472 t 4144 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaacaaguuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auga<----- ---------- ---------- ---------- ---------u gacu---ugc 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcuucauuc -aa|auaucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGAG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---auu--)C 1321 GGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUAUAGG- -GCUC(---- ---uuuu)GG GU-CU-UAUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCU CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ggg ccugg-acgg gcggu--c-c g-ccgc--aa ggcguugu-- ---------- 1801 ---------- --ac-ugucu g-g---cc-- --gggcc--u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uc uugg----ug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa u--cg-gugu gccc(-uuca 2161 cu----)gg- ---------- ---------- -gugcaucg- ggga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------GUU UACCUUG-AG AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg u--------- ---------- ---------- ---------- 2521 ---UUCGCCC -GAAUA-CAU -UAGCAUGG- AA-----|UA -AUGAAA-UA -GGA---cgu 2581 gcgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-CU---- -----AGAG- UCG--CCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UCAGUCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 GACUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAG 3301 GUUAGGGGA- UCGAAAACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -UGUAG|UCU UA--ACA-GU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggc-g-a-cc ucu-(---uu uugau----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gug-u c-gc-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCa- -aAGUC-uuu gGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 ugac-uagga uugacaga(u ugauagc)-- --ucuuucau gauu-uuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGCc- a--ggccggc ---------u uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gc uggucuuc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----gg-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Guc-g -g-c(----- 5041 --gucua-)g ccga-C-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGAG----- ---------- 5281 ---(------ ----)[ccag cgaguuc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 uuuuccu-ug gcc(ggaa-) ggucu----g gguaau-cuu gugaaa]--- ---------- 5461 -------cuc ugu-c-G--- UGCU-G-GGG AUAGAGCAU( UGCAAUUA)U UGCUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGCUU- 5641 agu-gagg-u cu-ccgga-u ugg-cuuc-g ggg-agccg- ---------- ---------- 5701 -------(gc ga----)--- ---------- ---------- --------cg gcac-ccug- 5761 uug----cug -agaa-|gcu -gaucaaacu ug-guc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS T.glabrata 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60311 LOCUS YSLSRSUA 1750 bp ss-rRNA PLN 13-MAR-1991 DEFINITION T.glabrata small subunit ribosomal RNA. ACCESSION M60311 KEYWORDS small subunit ribosomal RNA. SOURCE T.glabrata (strain ATCC 2001) rRNA. ORGANISM Torulopsis glabrata Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1750) AUTHORS Barns,S.M., Lane,D.J., Sogin,M.L., Bibeau,C. and Weisburg,W.G. TITLE Evolutionary relationships among pathogenic Candida species and relatives JOURNAL J. Bacteriol. (1991) In press STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1750 /product="small subunit ribosomal RNA" BASE COUNT 436 a 325 c 428 g 469 t 92 others ORIGIN BASE COUNT 436 a 325 c 428 g 469 t 4245 others ORIGIN 1 |~~~~~~~~~ ~~~~~NAUCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UNU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au nagcaa-uuu ---------- -au-acagug aa-]------ 181 -----|---U CU|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-cguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------u uccu--uuac 301 u>ACAUGGuA UAACUGUGG( -U-AAUU)CU AGAGC-UAA- NUCAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gguucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU -CGAUGGUA- 1141 GG(-AUAGUG G)CCU-ACCA U-|GGUUU-C AAC|GGGU-A A-CGGG|GAA -U-(AAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACAGG- -GCCC(---- ---auuc)GG GU-CU-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUG -UAAA--UAC CUU---AA-C GA-GGAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G nn-AA)UUCC AG-|CUCCAA 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 aacuuu-ugg ccugg-gu-g gccgg--u-c c-ga--(uuu uu)-ucgu-- ---------- 1801 ---------- --gu-acugg a-a---ugca cccgggcc-u u-ucc----- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- --------uu cugg----cu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------aa c--c---cca aguc(-cuu- 2161 gu----)gg- ---------- ---------- -cuuggc-g- gcga------ ---------- 2221 ---a------ ---ccaggac ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------UUU UACUUUG-AA AA--AAUUAG 2461 AGUGUUCAA- AG--CAGGCg u--------- ---------- ---------- ---------- 2521 ---AUUGCUC -GAAUA-UAU -UAGCAUGG- GA-----|UA -AUGGAA-UA -GGA---cgu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UNUU 2821 -UU-GUUGGU -UU-CU---- -----AGGA- CCA--UCGUA A--UGAUUAA UA--->---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGU ---------- 3001 --CGGGGGCA UC|--AGUAU UCAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUUG-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGAUG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UA|--- 3421 --gggau-cg ggu-g-g-ug yy--(---yu uuuagu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ac-ucg-g ca-ccuu--- ---------- ----acGA(- 3661 GAAA-)UCA- -aAGUC-unu gGGN|-U|C- UGGGGGGAGU AU--GG-NN( --NNNN-)NN 3721 NNN-NNNNNN -NNNN--NNN -NNN|NN-NN -NN-NNNNN- -NNNN-NNNN ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --N-NN|-NN 4021 NNNNNNNN|N NN-NNNNNNN (NNNNAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 caau-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- NGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGC(UU-AA UU)GCGAUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGUGG u--gcuagc- ---------a uuu------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcu ggu-uguc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----cA-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Auc-g -g-u(----- 5041 --uucaa-)g ccga-U-GGA AGUU-UGAGG CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-CGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CGGAG----- ---------- 5281 ---(------ ----)[ccag cgagucu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --aaccu-ug gcc(gaga-) ggucu----u gguaau-cuu gugaaa]--- ---------- 5461 -------cuc cgu-c-g--- UGCU-G-GGG AUAGAGCAU( UGUAAUUA)U UGCUCUUC-A 5521 ACNAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAG-U-A CC-GAU--UG AA-UGGcuu- 5641 agu-gagg-c cu-cagga-u cug-cuua-g aag-agggg- ---------- ---------- 5701 -------(gc na----)--- ---------- ---------- --------cu ccac-uuca- 5761 gag----cgg -agaa-|ucu -ggucaaacu ng-gug-a-n unag-NGGAA nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS A.american 5903 bp RNA RNA 11-JAN-191 DEFINITION Amblyomma americanum. ACCESSION No information KEYWORDS No information. SOURCE Amblyomma americanum. ORGANISM Amblyomma americanum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M60487 LOCUS ABLREAA 1441 bp ss-rRNA RNA 18-OCT-1991 Eukaryota; Animalia; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae. REFERENCE 1 (bases 1 to 1441) AUTHORS Turbeville,J.M., Pfeifer,D.M., Field,K.G. and Raff,R.A. TITLE The phylogenetic status of arthropods, as inferred 18S rRNA sequences JOURNAL Mol. Biol. Evol. 8, 669-686 (1991) BASE COUNT 357 a 330 c 393 g 351 t 4472 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ----|----- ---------- ---------- --|------- |--------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- --|------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---uggcGG( -c-cgcu)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guuucuuuc -aa|gugucu gc|--CUU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-UUACUU G)CCU-ACCA U-|GGUUG-U UAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuu)GA GGCCC-CGUA A-UUGAAAU- 1501 ------GAGU ----ACACUC -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AnCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--nnC UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuc---- --agu-ucca g-acug-agu ag--ugcauc -(uaccc--- ---------- 1801 ---------- )gaugcg-a- ---cg-gcuc gg---a--cu --gaaca--- -----ucaug 1861 ccgguccucu ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- -----cuugg ugcc(cuuca 2161 u----u)gg- ---------- ---------- -ugcgucuc- gagg------ ---------- 2221 ---aggccug cgc------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------UUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAA-C G--CAGCGA- ---------- ---------- ---------- ---------- 2521 ---gUCGCCU GAAUAa-ac- UUGCAUGGAA -------|UA -AUAGAA-CA -AGAcCccgu 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UGUU 2821 -CU-GUUGGU -UU-UU---- -----GGA-- -AUACG-GG- G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGCG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCUU -UGA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --gcgau-cc gccug-a-gu u---(---ac ucaaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUA-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-nG -An-nGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACnCGn nn[cgg-aca 4081 cugg-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AU UAAuagugcg gguucccagc accuuaca-- ------accu 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Acg-c -u-c(----- 5041 ----cua-)g ccgc---acg AAAC-AGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[gcag cgugucuuua ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--g ucu(gaaa-) agacu----g gguaacccgu -ggaac]--- ---------- 5461 -------UUC CUU-C-G--- UGAU-U-GGG AUAGGGGCU( UGCAAUUG)U UCCCCUUG-A 5521 ACGAGG-AAU U--C~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- 5701 -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~---~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~-------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS A.australi 5903 bp RNA RNA 11-JAN-191 DEFINITION Androctonus australis. ACCESSION No information KEYWORDS No information. SOURCE Androctonus australis. ORGANISM Androctonus australis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X77908 LOCUS AA18SRRN 1812 bp DNA INV 01-MAR-1994 DEFINITION A.australis gene for 18S ribosomal RNA Eukaryota; Animalia; Metazoa; Arthropoda; Chelicerata; Arachnida; Scorpiones; Buthidae. REFERENCE 1 (bases 1 to 1812) AUTHORS Chalwatzis,N., Kinzelbach,R. and Zimmermann,F.K. TITLE Complete sequence of a Scorpion 18S rRNA gene JOURNAL Unpublished BASE COUNT 470 a 410 c 491 g 441 t 4091 others ORIGIN 1 |--------- -----UACCU GGU(gGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 acauacc--- -------g-- ---------- ---------- aaauaaggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uac-gguu-- ----ccuuag 241 acug<----- ---------- ---------- ---------- ---------- --uacuuucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucuuuc -aa|gugucu gc|--CUU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-UUAUGC G)CCU-ACCA U-|GGUCG-U UAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uauu)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GGGU ----ACAAUC -UAAA--CCC UUU---AA-C GA-GuAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-UGG| UUA--AAAAG CUCGUAGUCG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuc---- --aga-uccg g-agcu-gcg gu--ccacc- -(gccc---- ---------- 1801 ---------- )--ggug-gu u--ac-ugua gc---ga-cc --ggacg--- -----uuugg 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ------ccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------au uccuuugaug cuc-(uuugc 2161 c----)-ga- ---------- ---------- -gugu-cuug -ggu------ ---------- 2221 ---guccggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAA-A G--CAGGcg- ---------- ---------- ---------- ---------- 2521 --uaccGCCU GAAUAa-ug- GUGCAUGGAA -------|UA -AUGGAA-UA -AGAcCucgu 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -CUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- -----GGA-- -AAACG-AG- G-AAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --gcaau-cc gccug-a-gu u---(---cc ucaaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gGGU|-U|C- CAGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUUACCCGG CC[cgg-aca 4081 cugg-aagga uugacaga(u uaagagc)-- --ucuuucuu gauu-cagug ga-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AC UAAaua-ga- -cgaac---- -gau-cacug ga-----guc 4381 -guucgaucu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agc-g -g-c(----- 5041 --uuuua-)g ccgc---acg AGAC-AGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucag cgugcguuua ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ccccu--g ucc(ggca-) ggacu----g gguaacccga -ucaac]--- ---------- 5461 -------CUC CUU-C-G--- UGAU-A-GGG AUAGGGGCU( UGUAAUUc)U UGCCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CAC-GAG (-UCAUAAG- )CUCGU-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-u cu-ucgga-c ugg-cgcu-c ggagcggccu uacu------ ---------- 5701 ---------- ---------- ---------- ---------- ------gguc gcgc-cggc- 5761 gug----ccg -gaaa-|gau -gaccgaacu ug-AUU-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGGAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.sapidus 5903 bp RNA RNA 11-JAN-191 DEFINITION Callinectes sapidus. ACCESSION No information KEYWORDS No information. SOURCE Callinectes sapidus. ORGANISM Callinectes sapidus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M34360 LOCUS CLLRRE 1861 bp ss-rRNA RNA 15-SEP-1990 Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca; Eucarida; Decapoda; Pleocyemata; Brachyura; Brachyrhyncha; Portunoidea; Portunidae. REFERENCE 1 (bases 1 to 1861) AUTHORS Kim,W. and Abele,L.G. TITLE Molecular phylogeny of selected decapod crustaceans based on 18S rRNA nucleotide sequences JOURNAL J. Crust. Biol. 10, 1-13 (1990) BASE COUNT 359 a 375 c 421 g 367 t 4381 others ORIGIN 1 |--------- -----nnCCU GGU(nGA)UC CU|GCCAGn- A-GUCn-Unn --GCUUGUCU 61 CAAA|-nnUU AA-GCCnnGC A-UGUCU-nA GU|------- |--------- ----[----- 121 acaagcc--- -------g-- ---------- ---------- aaunaaggcg aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-nnnU AAAU-cagc- uau-gauu-- ----cauunn 241 aucu<----- ---------- ---------- ---------- ---------g uacccncncn 301 n>ACUUGG-A UAACUGUGG( -U-AAUU)CU AnAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gccucuuuc -aa|gugucu gc|--CUU-A UCA--GCUUU C-GAUUGUA- 1141 GG(-UUAUAC G)CCU-ACnA U-|GGCUn-U nAC|GGGU-n A-CGGG|GAA -U-(GAGG-) 1201 GUU-CGAUU- CCG|GAGAGn G-AGCC(U-G AGAAAC)GGC UACC-ACnUC (UnAG-)Gnn 1261 -GGCAGC-A- ---------| GGC-AC-GC- nnAUU-ACCC -ACUCC--G( ---gcn--)C 1321 GGGG-A-GGU -|A|GUGACn AAAA-AU--- ---------- ---------- ---------- 1381 -----|---- ---------- ---------- ---------- ---------- ---------- 1441 --------AA CGAUGCGAG- -ACUC(---- ---aucc)Gn GGCCU-CGnn A-UCGGAAU- 1501 ------GAGU ----nCACUU -UAAA--UCC UUU---nA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-Cn A-GU-C-UGG U-G(CCn-GC -AGCC|nC-G GU-nA)UUCC AG-|CUGCAA 1621 U-AnnGUA|U AUUAA--AGU UGUUG-CGG| UUA-nnAAAG CUCGUAGUUn |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 nauuuc---- --agu-ucug g-acug-acg gu--uncc-- -(gcnn---- ---------- 1801 ---------- )---ggu-gc ac-ac-uguc ac-ncu--cc --gaaca--- -----gccac 1861 aacac----- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----cgcug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gc c-nnnggggu gcuc(uucnc 2161 c----)ngg- ---------- ---------- -uguc-cn-n -nnn------ ---------- 2221 ---nnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnn--- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 -----nnCCU GAAUGc-cua ugcanUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -nnC|-UnUU 2821 -UU-GUCGGU -UU-UC---- -----uga-- -acccG-AG- G-UAA-UGAC UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CnGG ---------- 3001 --CGGGGGCn UU|--CGUAU UGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-nAG- A-CGAACU-n CUGC(-GAAA )--GC|A--- UUUGCC-nA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ----UUUCnU -UnA-U|Cn- A-GAAnGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -nnnnn|nnn nA--ACC-nU AAACGAUGCU GAC|CA|--- 3421 --gcgau-cc gcc-ggn-nu u---(---au unncau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gg-ccn-c -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUC -AAAG--GAA -UUG|AC-GG -nn-nnnnn- -nnnn-nnnn ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --n-nn|-nn 4021 nnnnnnnn|n nn-nnnnnnn (nnnnnA-CA )CGGG--GAA CCUCACCAGG CC[cag-aca 4081 ccgg-aagga nngacaga(u ugagagc)-- --ucnnucuc -auu-nggug gg-----]-- 4141 ---------- -]-------- |--------- ---------- ---------- ---------- 4201 ---------- ---|UG-GU- nGU-G-CAUn |ncg|nguUC UUA|GUUGG- U|GGA(-GCG 4261 n-)nnnnnn- -nnn(nn-nn nn)nCGAUn- AC-GAACGAG Annnn-nn|- ---------- 4321 ------(--- --)[nnnnnn nnnnnnnnnn n-nnnnnnnn nnnnnnnnng uguc-caguu 4381 cgc--agcuu cu-------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- ---------- ---------- gaua-a-c-g -g-c(----- 5041 aauucua-)g ccgc---acg AGAU-UGAG- CAAUAA--CA AGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-G-CGC A-CGCGCGCU ACACU--G-A AGGGA----- ---------- 5281 ---------- -----[ucaa cgugucc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccn--c ucc(gaga-) ggagc----g ggnnncccgu -ugaaa]--- ---------- 5461 -------UCC nUU-C-A--- UGAU-A-GGG AUUGGGGUU( UGCAAUUG)U CUCCCAUG-A 5521 AnnnGG-AAU U--CCCAGUA AG-CGC-AAG (-UCAUGAG- )CUUGC-G-n -UGAUUnnG- 5581 U-CCCUnCCn nU|UGUA-CA CACCnnnnnU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-- cu-ucgga-c ugg----c-g c---uc-uug gaugc----- ---------- 5701 -------cgg nc---ccgag ngguucnncg ccggnncncg gcgccucgag cug------- 5761 -------acg -gaaa-|gau -guccaaacu ug-AUn-n-n nnnn-nnnnn nn-nnAA-G- 5821 UCGUAACAAG GU-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Diastyl.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Diastylis spp.. ACCESSION No information KEYWORDS No information. SOURCE Diastylis spp. ORGANISM Diastylis spp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z22519; Z22222 ID DS18SRNAA standard; RNA; INV; 1793 BP. DT 09-APR-1993 (Rel. 35, Created) DT 02-JUN-1993 (Rel. 36, Last updated, Version 3) OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Cumacea; OC Diastylidae. RN [1] RC (sites) RA Kim W., Kim C.B., Min G.S., Kim S.H.; RT "The nucleotide sequences of 18S ribosomal RNA gene of a RT crustacean cumacean, Diastylis sp."; RL Nucleic Acids Res. 21:2767-2767(1993). BASE COUNT 440 a 425 c 501 g 427 t 4110 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GA|------- |--------- ----[----- 121 ucaagcu--- -------c-- ---------- ---------- gucucgcgga ca-]------ 181 -----|---A CU|G-CGGA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----cauugg 241 aucg<----- ---------- ---------- ---------- ---------- -agucccccc 301 g>ACGUGG-A UAACUGUGG( UU-AAUU)CU AGAGC-UAA- UACACU---- ---------- 361 ---------- ---------- ---------- -- -ggauccuuc -ga|augucu gc|--CCU-A UCU-AACUUU C-GAUGGUA- 1141 CG(-UUAUGC G)CCU-ACCA U-|GGUC--G UCA|CGGU-A A-CGGA|GAA -U-(CAG--) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCC--G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -ACUC(---- ---uuuc)GA GGCCC-UGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuu---- --ggg-ccca g--ugc-ggc gc-cgug--- -(agg----- ---------- 1801 ---------- )----cg-u- ---gu-acug ca-guc--cu --ggccu--- -----u---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---cu-cucg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------gu u-uucgccgu gccc(uuaau 2161 u----)gag- ---------- ---------- -ugcc-ag-g -aga------ ---------- 2221 ---ggccgga ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUGGA 2461 GUGUUCAA-A G--CAGCCUc ---------- ---------- ---------- ---------- 2521 ----gCGCCU GAACAg-ca- GAGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UACU 2821 -GC-GUUGGU -UU-UC---- -----GGA-- -ACUCG-AG- G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGUG-UG -A-AG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-AAG- A-CGACCg-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC GAC|UG|--- 3421 --acgau-cc gcc-ggc-gu u---(---ac ucccau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-g c-gg-cgg-g -c-agucu-- ---------- ----aaGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAU-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 CAUGC-UG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACC-GG CC[cgg-aca 4081 cagu-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cugug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CUU-GC UAAaua-guu -gcgcc---- -acc-cggcc -------ggu 4381 gcgcgucaac u--------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-- -g-c(----- 5041 --guuua-)g ccac---gcg AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GC-G- A-CGCGCGCU ACACU--G-G CGGAA----- ---------- 5281 ---------- -----[ucag cggguacacu ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --cccuu--g gcc(ggaa-) ggucu----g gguaauccgc -ugaac]--- ---------- 5461 -------CUC CUC-C-G--- UGAU-G-GGG AUAGGGAGU( UGCAAUUA)U CUCCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA A---GC-GAG (-UCAUCAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gaga-u cc-ucgga-u cgu-cggc-g ucg-ggac-- ---------- ---------- 5701 -------(uu ugc---)--- ---------- ---------- ------gccu cgcu-cgca- 5761 ugu----acg -agaa-|gac -gaucaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS A.nobilis 5903 bp RNA RNA 11-JAN-191 DEFINITION Argulus nobilis. ACCESSION No information KEYWORDS No information. SOURCE Argulus nobilis. ORGANISM Argulus nobilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M27187 LOCUS ARNEAA 1843 bp ss-rRNA RNA 28-JUN-1994 Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiura; Arguloida; Argulidae. REFERENCE 1 (bases 1 to 1843) AUTHORS Abele,L.G., Kim,W. and Felgenhauer,B.E. TITLE Molecular evidence for inclusion of the phylum Pentastomida in the crustacea JOURNAL Mol. Biol. Evol. (1989) In press REFERENCE 2 (sites) AUTHORS Spears,T. and Abele,L.G. TITLE Two forms of 18S ribosomal RNAs co-occur in the branchiopod taxa Ceriodaphnia and Bythotrephes JOURNAL Unpublished (1994) BASE COUNT 465 a 415 c 506 g 457 t 4060 others ORIGIN 1 |--------- -------CCU GGU(UGA)UC CU|GCCAGU- A-GUUA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 acaaagc--- -------c-- ---------- ---------- uacaaggcug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- ugu-gguu-- ----uacuag 241 aucg<----- ---------- ---------- ---------- ---------- -uaccaauuc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gggucuuuc -aa|augucu ga|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUAUGC G)CCU-AC-A U-|-GUUG-U CAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauccc---- --agu-ugca g-acgg-gcg gu--ccgcc- -(ucau---- ---------- 1801 ---------- )--ggcg-gu uc-ac-ugcc uc-guu--cu --cgaca--- -----uaccu 1861 ccgguugauc ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --------uu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug u-cccgcgau gcuc(uucau 2161 c----)ggg- ---------- ---------- -uguc-gc-g -gga------ ---------- 2221 ---ggccggg ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUUAA-A G--CAGGCG- ---------- ---------- ---------- ---------- 2521 ---AUGGCCA GAAUAa-ug- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UUC|-UAUC 2821 -UU-GUUGGU -UC-UUc--- -----GGA-- -ACACG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CGGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCGU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --gcgau-cc guc-ggc-gu u---(---ac uuagaau--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-ga-cga-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-ucu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CCG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 cuug-gagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCCU-UU|- ---------- 4321 ------(--- --)[CCU-GC UAAaua-gg- -cggaa---- -gau-ccuca ugca-guguc 4381 -uaacguucu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GAca-ggu-g -g-c(----- 5041 --guuua-)g ccac---acg AGAU-UGGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GC-GC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[ucaa cguggu---- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ccccu-ag ucc(gaga-) ggacc----g ggaaacccgc -ggaau]--- ---------- 5461 -------CUC CUU-C-G--- UGAU-A-GGG AUUGGGGCU( UGCAACUG)C AACCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-UGC-GAG (-UCAUAAG- )CUCGC-A-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-a cu-ucgga-u cgg-ugcc-c guc-guggcu c--------- ---------- 5701 -------(cu cg----)--- ---------- ---------- ---gagccau ucgg-uguu- 5761 uaa----cca -ugaa-|gau -auccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS A.salina 5903 bp RNA RNA 06-JAN-1985 DEFINITION Artemia salina. ACCESSION No information KEYWORDS No information. SOURCE Artemia salina. ORGANISM Artemia salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X01723 Phylo:Eukaryotes,Animal,Arthropod BASE COUNT 454 a 417 c 503 g 436 t 4093 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 acaagcc--- -------c-- ---------- ---------- ccagugggcg aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAAU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- uacuauaucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gugucuuuc -aa|augucu gc|--CUU-A UCA--ACUUU C-GAUGGUA- 1141 GG(-CUAUGC G)CCU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGG|GAA -U-(CGGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-A( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCAGG- -ACUC(---- ---aucc)GA GGCCC-UGUG A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauaug---- --ggu-cucg g-ucgg-gug gu--gccgcc -(ucac---- ---------- 1801 ---------- )-ggugguc- ---ac-ugcc uc-ga---uc --ggaca--- -----auuca 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----uugga 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc g-uucggggu gcuc(uuaac 2161 c----)gag- ---------- ---------- -uguc-cu-g -ggu------ ---------- 2221 ---ggccgau ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-A G--CAGGUGc ---------- ---------- ---------- ---------- 2521 -accgCGCCU GAAUAu-ca- CAGCAUGGAA -------|UG -AUGGAA-UA -GGAcCucgg 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -UCU|-UAUU 2821 -aU-GUUGGU -UU-UC---- -----uGG-- -ACUUG-AG- G-UAA-UGGU UAACA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAC UGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACA-A CUGC(-GAAc )--aa|g--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --gcgau-cc gcg-gac-gu u---(---ac uugaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-cg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUG-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 cugg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAaua-ga- -cgaugg--- -auc-cuagu -------ggu 4381 ggaucgcucu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --gucua-)g ccau---aug AGAG-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-G AAGAA----- ---------- 5281 ---------- -----[ucag cgcgucc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--g ucc(gaga-) ggacc----g gguaac-cgc -ugaac]--- ---------- 5461 -------CUC UUC-C-G--- UGGU-U-GGG AUUGGGGAC( UGCAAg-g)a UCCCCAUG-A 5521 ACCAGG-AAU C--CCUAGUA GG-CGC-AAG (-UCAUUAG- )CUUGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gaga-a cu-ucgga-c gac-ucgc-c agg-gcagc- ---------- ---------- 5701 -------(uc cgg---)--- ---------- ---------- -----gccgc ucgu-ggug- 5761 u-g----guu -gaaag|guu -guucaaacu ug-AUC-C-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.major 5903 bp RNA RNA 11-JAN-191 DEFINITION Stenocypris major. ACCESSION No information KEYWORDS No information. SOURCE Stenocypris major. ORGANISM Stenocypris major. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z22850 ID SM18SRNAA standard; RNA; INV; 1787 BP. DT 31-MAY-1993 (Rel. 36, Created) DT 31-MAY-1993 (Rel. 36, Last updated, Version 1) OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Ostracoda; OC Myodocopa; Myodocopida; Myodocopina; Cypridinoidea; Cypridinidae. RN [1] RC (sites) RA Kim S.S., Min G.G., Moon S.S., Kim W.W.; RT "Sequence and secondary structure of 18S rRNA gene of a crustacean RT ostracod, Stenocypris major: comparison with other crustacean RT species."; RL Unpublished. BASE COUNT 454 a 396 c 495 g 442 t 4116 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-GGUCU-AA GU|------- |--------- ----[----- 121 acgagcc--- -------g-- ---------a ---------- aauaaaugug ag-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU ACAU-cagu- uau-gguu-- ----ccuuag 241 aucu<----- ---------- ---------- ---------- ---------- -ucgguaucc 301 u>ACUUGG-A UAACCCUGG( -A-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -aacucuuuc -aa|augucu gc|--CUU-A UCA--ACUU- --GAUGGUA- 1141 GG(-UUAUGU G)CCU-ACCA U-|GGUGA-U AAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGUAG- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GG---A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---aucc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -CAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|---G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuc---- --agu-uacg g-gcag-gug gu-ucacc-- -(ucac---- ---------- 1801 ---------- )---ggu-gc u--ac-uacc ug-ga---cc --ggacc--- -----uauug 1861 c--------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ------uggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc c-uccgaggu gccc(uucac 2161 u----)ggg- ---------- ---------- -ugcu-uc-g -gga------ ---------- 2221 ---gaccaga gc-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUCU GCUUUG-AAA A--AAUUGGA 2461 GUGCUCAA-A G--CAGGCG- ---------- ---------- ---------- ---------- 2521 ------AAUC GUUACa-uuc GUGCAUG-AG -------|UA -AUGAAA-AU -GGCcUcgg- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -ugC|-UAUU 2821 -UU-GUUGGU -UC-UC---- -----GGU-- -ACUCG-AG- G-UAA-UGGU UGA-A>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UAGA-U-C 3061 GUCGC-AAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- -CGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UG--ACC-UU AAGCGAUGCC AAC|UG|--- 3421 --gcgau-cc guc-ggg-gg u---(---au uuccau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c u-ga-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu gGGU|-U|-- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-GAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-G- 4021 AGCAGUGC|G -U-UAAUCUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cag-aca 4081 cuag-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-uggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CCU-AC UAAaua-ga- -cggcgg--- -auc-auugc -------guc 4381 cguuaugucu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- -ACA-Aa--g -g-c(----- 5041 --ucgaa-)g cugc---gug AAAC-GGGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG----GC A-CACGCGCU ACACU--G-A AGGUG----- ---------- 5281 ---------- -----[acaa cguguuc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --gucug--g cuc(gaaa-) gggu-----g gguaacccgu -ccaau]--- ---------- 5461 -------CAC CUU-C-G--- UGCU-G-GGG AUUGAGGUU( CGCAAUUG)U CCUUCAUG-A 5521 ACGAGG-AAU U--CCCGGUA AG-UGC-AAG (-UCAUAGC- )GUCGC-G-C -UGACUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GCAU-UG AA-UGAUuu- 5641 agu-gagg-- cu-ucgga-c ugg-gacc-g aug-cggcu- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------ggcu gcgu-cggu- 5761 auuc---ccg -gaaa-|gau -gu-caaacu gu-AUC-A-U UUAG-AG-AA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS U.oeresund 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26521 LOCUS ULOERRNAA 1812 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Ulophysema oeresundense 18S ribosomal RNA (18S rRNA). ACCESSION L26521 KEYWORDS 18S ribosomal RNA. SOURCE Ulophysema oeresundense rRNA. ORGANISM Ulophysema oeresundense Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Cirripedia; Ascothoracica. REFERENCE 1 (bases 1 to 1812) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603470 FEATURES Location/Qualifiers source 1..1812 /organism="Ulophysema oeresundense" /sequenced_mol="rRNA" rRNA 1..1812 /gene="18S rRNA" /note="putative" /product="18S ribosomal RNA" BASE COUNT 464 a 420 c 483 g 425 t 20 others ORIGIN BASE COUNT 464 a 420 c 483 g 425 t 4111 others ORIGIN 1 |--------- ---------n nnn(nnn)nn nn|nCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ccaugcc--- -------c-- ---------- ---------u aagcaaggug ac-]------ 181 -----|---A CC|G-CGAA- AGGCU-CAUU AAAU-cggu- cgu-uguu-- ----ucuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uaccuagc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu gc|--CUU-A UCA--GCUUU C-GAUUGUA- 1141 GG(-UUAUAC G)CCU-ACAA U-|nnnAA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GCU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-G( ---acu--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---aucc)GA GGCCU-CGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gu-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CnG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuc---- --ggu-ucca g-acgg-gcg gu-ucgcc-- -(guac---- ---------- 1801 ---------- )---ggc-gu u--ac-ugcc c--gga--cu --gaaca--- -----ucccg 1861 u--------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ------cggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc g-ccccaggu gcuc-uuuac 2161 c-----gag- ---------- ---------- -uguc-uc-g -ggu------ ---------- 2221 ---ggccggu ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCga ---------- ---------- ---------- ---------- 2521 ---nuaGCCU GAAUaa-uu- gUGCAUGGAA -------|UA -AUGAAA-CA -AGAcCungg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-Uc---- -----gaa-- -accgA-AG- G-UGA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --gcgau-cc gcc-gga-gu u---(---nc uccaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CCG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAaua-ga- -cggca---- -gaucuaagu aa----gguc 4381 -ucccgggcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gaua-agc-g -g-c(----- 5041 --gucua-)n ccgc---acg AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---------- -----[gcag cgug-uacu- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---cccu--g ucc(gagc-) ggacc----g gguaacccgu -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UGAU-A-GGG AUUGGGGCU( UGAAAUUA)U UCCCCAUG-a 5521 aCGAGG-AAU U--CCCAGUA AG-UGC-AAG (-UCAUAAG- )CUUGC-G-U -UGAUUACG- 5581 U-GCCUCCCU GU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-CGAUuu- 5641 agu-gagc-c cu-ucgga-c ugg-ugcc-- cgagccgccc ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -----ggucg cguc-ugug- 5761 cc-----ucg -ggaa-|gau -guccaacau ug-AUC-G-U CAAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG AU-------- -----U-U-C CGCAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS B.packardi 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26512 LOCUS BNTERRNAA 1793 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Branchinecta packardi 18S ribosomal RNA (18S rRNA). ACCESSION L26512 KEYWORDS 18S ribosomal RNA. SOURCE Branchinecta packardi rRNA. ORGANISM Branchinecta packardi Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiopoda; Sarsostraca; Anostraca; Branchinectidae. REFERENCE 1 (bases 1 to 1793) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603440 FEATURES Location/Qualifiers source 1..1793 /organism="Branchinecta packardi" /sequenced_mol="rRNA" rRNA 1..1793 /gene="18S rRNA" /note="putative" /product="18S ribosomal RNA" BASE COUNT 440 a 413 c 496 g 434 t 10 others ORIGIN BASE COUNT 440 a 413 c 496 g 434 t 4120 others ORIGIN 1 |--------- ---------n GGU(UGC)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-nn GU|------- |--------- ----[----- 121 acaccuc--- -------u-- ---------- ---------- ----ggggcg aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAaU AAAAucagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacuaucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUAUGC G)CCU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCAGG- -ACUC(---- ---aucc)GA GGCCC-UGUG A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGACC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gu-AA)CUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc---- --ggu-cgcg a-ucag-gug gugccgcc-- -(ucgc---- ---------- 1801 ---------- )---ggu-gu g-cac-ugcc uc-ga---uc --ggaca--- -----aucca 1861 ccgga----- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cu g-uccggggu gcuc-uuaac 2161 c-----gag- ---------- ---------- -uguc-cu-g -ggu------ ---------- 2221 ---ggccggu ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUAGA 2461 GUGCUUAA-A G--CAGGUcg ---------- ---------- ---------- ---------- 2521 -uccgcGCCU GAAUau-ca- cAGCAUGGAA -------|UG -AUGGAA-UA -GGAcCucgg 2581 UCU------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-Uc---- -----ugg-- -acuuG-AG- G-UAA-UGGU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAC UGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --gcgau-cc gca-gac-gu u---(---ac uucaau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-ug-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 cugg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAaua-ga- -uggcg-u-- -auc-ugcg- -------ggu 4381 acgcuacucu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gaca-agu-g -g-c(----- 5041 --aucua-)g ccau---aug AAAG-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUC CUGG-GCCGC A-CGCGCGCU ACACU--G-A AAGAA----- ---------- 5281 ---------- -----[ucag cgcg-uccu- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---cccu--g ucc(gaga-) ggac-----g gguaac-cgc -ugnac]--- ---------- 5461 -------CUC UUU-C-G--- UGGU-U-GGG AUUGGGGAC( UGCAAG-G)A UCCCCAUG-a 5521 aCCAGG-AAU C--CCUAGUA GG-CGC-AAG (-UCAUUAG- )CUUGC-G-U -CGAUUACG- 5581 U-CCCUGCCU U-|nGnA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gaggaa cu-ucgga-c gauccgcc-- gggccguc-- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- -----ggcgg cuuc-ggug- 5761 ucg----auu -gaaa-|guu -guucaaacu ug-AUC-C-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGn nGGnU~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS L.texanus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26517 LOCUS LOYERRNAA 1880 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Loxothylacus texanus 18S ribosomal RNA (18S rRNA). ACCESSION L26517 KEYWORDS 18S ribosomal RNA. SOURCE Loxothylacus texanus rRNA. ORGANISM Loxothylacus texanus Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Cirripedia; Rhizocephala; Kentrogonida. REFERENCE 1 (bases 1 to 1880) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603458 FEATURES Location/Qualifiers source 1..1880 /organism="Loxothylacus texanus" /sequenced_mol="rRNA" rRNA 1..1880 /gene="18S rRNA" /note="putative" /product="18S ribosomal RNA" BASE COUNT 455 a 433 c 531 g 449 t 12 others ORIGIN BASE COUNT 455 a 433 c 531 g 449 t 4035 others ORIGIN 1 |--------- ---------n nnn(UGA)cC CU|GCCAGU- A-AUGA-UAU --GCUUGUGU 61 AAAA|-GAUU AA-GCCAUGC A-UGUAU-GA GU|------- |--------- ----[----- 121 acaagcc--- -------u-- ---------- ---------- aaauaaggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- cau-aauu-- ----ugcugg 241 ccga<----- ---------- ---------- ---------- ---------- --gacuguga 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcgcucucu -aa|augucu gc|--CCU-A UCA--GCUGU C-GACGGUU- 1141 AG(-CUAGUG G)CUG-ACCG U-|GGCUG-U GAC|GGGU-A A-CGGG|GAA -U-(CUGG-) 1201 GUU-CGAUU- CCG|GAGAGG C-AGCC(U-G AGAGAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGn-A- ---------| GGC-GC-GU- AACUU-ACCC -ACUCCc-a( ---gcu--)c 1321 aGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CUUACAGAGa -UGCU(---- guuaauc)GG UAUCU-CUCA A-ACGGAAU- 1501 ------GAGU ----ACAAUG -UGAA--UCC UUU---AA-C GA-GGAUC-- ----->AACU 1561 GGAG|Gn-CA A-GC-N-UGG U-G(CCA-nC -AnCC|GC-G Gn-AA)UUCC AG-|CUCCAG 1621 U-AGCAUA|U AUUAA--AGC UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc---- --agu-gcgu g-ucc--acg u-ccgguaug cucgguugac ugcguucgcg 1801 cgugg---uc cgccgggcuu u-caa-guau cggcuggccg cauuuaaaug ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------u gccggauccg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uu g-acg-ggcc guuu-uuccg 2161 aa----gcg- ---------- ---------- -gccu-gu-c -ggc------ ---------- 2221 ---gaccggc gau------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------g-UU ACCUUG-AAC A--AAGCUGA 2461 GUGCUCAA-G G--CAGGCua ---------- ---------- ---------- ---------- 2521 -ucaacGCCU GAAAau-au- aUUCAUGGAA -------|UU -GGAGAA-UA -UGUcCcugg 2581 CUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-GAUU 2821 -UG-GUCGGU -GU-Ug---- ----cgag-- -ucgaA-GG- G-AAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGAGGCA UU|--CGUAU UGCGGCG-CG -AGGG(GU-G AAA---)UCC U-GUGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-GA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-nU AAACGAUGUC AAC|CA|--- 3421 --gcaau-cc gcaau-g-gu c---(---ac uuguuc---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c g-ug-cgg-n -c-agcuccu c--------- ----ccGG(g 3661 gaaa-)CCA- -GAGUU-uuc gGAC|-U|C- CGGGGGGAGU AU--AG-GU( --GCAA-)AC 3721 CAG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-AGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUCACCAGG CC[cag-aca 4081 cugu-aagga uugacaga(c ugagagc)-- --ucucucgu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CCU-AU UAAacuuga- -ugccguu-- -cguacuucg g-----uacg 4381 ucgguacgcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gauc-guc-g -g-c(----- 5041 -gccuua-)g ccga---acg AAAG-AGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC C-CGCGUGUU ACACU--G-A GGCAG----- ---------- 5281 ---------- -----[acag ugcgcgcgca aucaaacg-- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--c ucc(gcaa-) ggagc----g ggcaaa-cgu uugaaa]--- ---------- 5461 -------CUG UUC-C-G--- UGAU-U-GGA AUUGGGGAU( UGCAAUUA)U CCCCCAUG-a 5521 aCGAGG-AAU U--CCUAGUA AG-CGC-AAG (-UCACUAG- )CUUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCU UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU---G GA-UGAUuu- 5641 ggu-gagg-u cg-ccuagac ugg-ccgc-u ggc------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --gc-cgug- 5761 cgg----ccg -gaaa-|ggc -gcccaaacu ug-GUC-G-U CUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-U CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS B.eburneus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26510 LOCUS BLNERRNAA 1863 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Balanus eburneus 18S ribosomal RNA (18S rRNA). ACCESSION L26510 KEYWORDS 18S ribosomal RNA. SOURCE Balanus eburneus rRNA. ORGANISM Balanus eburneus Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiura; Thoracica; Balanomorpha; Balanoidea; Balanidae. REFERENCE 1 (bases 1 to 1863) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603439 FEATURES Location/Qualifiers source 1..1863 /organism="Balanus eburneus" /sequenced_mol="rRNA" rRNA 1..1863 /gene="18S rRNA" /note="putative" /product="18S ribosomal RNA" BASE COUNT 437 a 431 c 527 g 441 t 27 others ORIGIN BASE COUNT 437 a 431 c 527 g 441 t 4067 others ORIGIN 1 |--------- ---------n nnn(nnA)nC Cn|GCCAGn- n-GUGA-UAg --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-nGUAU-CA GU|------- |--------- ----[----- 121 acaagcc--- -------u-- ---------- ---------- cacunaggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-uauu-- ----uacugg 241 ccga<----- ---------- ---------- ---------- ---------- --gacaguga 301 u>ACAUGG-A UAACUGUGG( -U-AA-U)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcgccuuuc -aa|auaucu gc|--CUU-A UCA--GCUCU C-GACGGUU- 1141 UN(-CUAGUG G)CUG-ACCG U-|GGCUC-U GAC|GGGU-A A-CGGG|GAA -U-(CUGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -ACUCCc-a( ---guu--)c 1321 aGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CUUACAGAGg -UCUC(---- guuaacc)GA GAUCU-CUNA A-ACGGAAU- 1501 ------GAGU ----ACAACG -UGAA--UCC UUU---AA-C GA-GGAUC-- ----->GACU 1561 GGAG|GG-CA A-GC-C-UGG U-G(CCA-GC -AGCC|GC-G Gu-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc---- --agu-gcgu ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---g------ ---------u 1861 ccggu----c cgguaunccu ggcggcggcg cucgcgguca cugcugggcu cccaaauauc 1921 ggc------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- --uggccgca uucaaucgug ccggaunnnn 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------nn g-ccg-ggcc guuc-uucgg 2161 a-----ggg- ---------- ---------- -gccu-gg-u -ggc------ ---------- 2221 ---gaccggc gac------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------g-UU ACCUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCuc ---------- ---------- ---------- ---------- 2521 -uguauGCCU GUAUac-au- aUUCAUGGAA -------|UU -GGAGAA-UA -CGUcCcugg 2581 CUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-GAUU 2821 -UG-GUUGGU -UU-Ug---- ----agag-- -ucgaA-GG- G-AAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGAGGCA UU|--CGUAU UGCGACG-CG -AGGG(GU-G AAA---)UCC U-GUGA-C-C 3061 GUCGC-ACG- n-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-GA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACGAUGUC GAC|CA|--- 3421 --gcaau-cc gcaac-g-nu c---(---ac uacacg---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ug-cgg-n -c-agcuucc ---------- ----ccGG(g 3661 gaaa-)CCA- -GAGUU-uuu gGAC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUCACCAGG CC[cgg-aca 4081 ccgu-aagga uugacaga(c ugauagc)-- --ucucucuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CCU-AU UAAauuuga- -cacuguc-- -agucuuuac u-----gacu 4381 gcggugggcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gauc-auc-g -g-c(----- 5041 -guccca-)g ccga---agg AAAU-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGUGUU ACACU--G-A AGUGG----- ---------- 5281 ---------- -----[ucag cgcgccguuc aaca------ ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ccccu--c ucc(guga-) ggagcu---g ggcaaa-cgu uugaac]--- ---------- 5461 -------CCU UUU-C-G--- UGAU-G-GGA AUUGGGGGU( UGCAAUUG)U CCCCCAUG-a 5521 aCGAGG-AAU U--CCAAGUA AG-CGC-AGG (-UCACUAG- )CCUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU---G GA-UGAUuu- 5641 ggu-gagg-u cg-ccuagac ugg-cugc-u ggc------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --gc-cgug- 5761 cgg------c -ggaa-|gac -gcccaaacu ug-GUC-G-U nnAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS O.lowei 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26518 LOCUS OCLERRNAA 1874 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Octolasmis lowei 18S ribosomal RNA (18S rRNA). ACCESSION L26518 KEYWORDS 18S ribosomal RNA. SOURCE Octolasmis lowei rRNA. ORGANISM Octolasmis lowei Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiura; Thoracica; Poecilasmatidae. REFERENCE 1 (bases 1 to 1874) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603465 FEATURES Location/Qualifiers source 1..1874 /organism="Octolasmis lowei" /sequenced_mol="rRNA" rRNA 1..1874 /gene="18S rRNA" /note="18S rRNA; putative" /product="18S ribosomal RNA" BASE COUNT 422 a 422 c 513 g 435 t 82 others ORIGIN BASE COUNT 422 a 422 c 513 g 435 t 4111 others ORIGIN 1 |--------- ---------n nnn(UnA)nC CU|GCCAGU- A-GUGA-UAU --GCUUGUCU 61 UAAA|-GACU AA-GCCAUGC A-UGUAU-CA GU|------- |--------- ----[----- 121 acaagcc--- -------u-- ---------- ---------- aacuaaggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gauu-- ----uccugg 241 ccga<----- ---------- ---------- ---------- ---------- --gacaguga 301 u>ACAUGG-A UAACUGUGC( -U-AAUU)GU ACAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcgccuuuc -aa|auaucu gc|--CUU-A UCA--GCUCU C-GACGGUU- 1141 UG(-CUAGUG G)CUG-ACCG U-|GnCUC-U GAC|GGGU-A A-CGGG|GAA -U-(AUGG-) 1201 GUU-CUAUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UnCC-ACAUC (UAAG-)GGA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -ACUCUc-a( ---gcu--)c 1321 aAGG-A-GGU -|A|GUGNCA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CUUACAGAGg -UCUC(---- guuaacc)GA GAUCU-CUCA A-ACGGAAU- 1501 ------GAGU ----ACAACG -UGAA--UCC UUU---AA-C GA-GGAUC-- ----->GACU 1561 GGAG|GG-CA A-GC-C-UGG U-G(CCA-GC -AGCC|GC-G Gu-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CGG| UUA--AAAAG CUCGGAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc---- --agu-gcgu ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---g------ ---------u 1861 ccggu----c cggcaugccc ggugcguuau gcgugguggu aaccccgccg cgugaugacg 1921 cccgggcucc caaaugucgg ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- --uuggccgc auucaauggu gucggauccg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cc g-acg-ggcc guuc-uucgg 2161 a-----ggg- ---------- ---------- -gucu-gu-u -ggc------ ---------- 2221 ---gaccggc ggc------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------g-UU ACCUUG-AAC A--AAUCAGA 2461 GUGCUCAA-A G--CAGGCuc ---------- ---------- ---------- ---------- 2521 -ucaauGCCU GUAUac-au- aUUCAUGGAA -------|UU -GGnGAA-UA -CGUcCcugg 2581 CUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-GAUU 2821 -UG-GUUGGU -UU-Ug---- ----agag-- -ucgaA-GG- G-AAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGAGGCA UU|--CGUAU UGCGACG-CG -AGGG(GU-G AAA---)UCC U-GUGA-C-C 3061 GUCGC-ACG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-GA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACGAUGUC GAC|CA|--- 3421 --gcaau-cc gcaac-g-gu c---(---ac uuaaag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ug-cgg-- -c-agcuuuc ---------- ----ccGG(a 3661 gaaa-)UCA- -GAGUG-uuu gGAC|-U|C- Cnnnnnnnnn nn--nn-nn( --nnnn-)nn 3721 nnn-nnnnnn -nnnn--nnn -nnn|nnnnn -nn-nnnnn- -nnnn-nnnn ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --n-nn|-n- 4021 -nnnnnnG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUCACCAGG CC[cgg-aca 4081 ccgu-aagga uugacaga(c ugauanc)-- --ncncncuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-UA U-)CCGAUA- AC-GAACGAG ACUCU--g|- ---------- 4321 ------(--- --)[CCU-AU UAAacuuga- -ugccgcc-- -aguccuuau gu----gacu 4381 gggguaugcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gauc-auc-g -g-c(----- 5041 -guccca-)g ccga---agg AAAG-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-U- A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGUGUU ACACU--G-A AGUGG----- ---------- 5281 ---------- -----[ucag cgcgccguuc aacgu----- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---cccn--c ucc(gaga-) ggagc----g ggcaaa-cgu uugaac]--- ---------- 5461 -------CCU UUU-C-G--- UGAU-G-GGA AUUGGGGGU( UGCAAUUG)U CCCCCAUG-a 5521 aCGAGG-AAU U--CCAAGUA AG-CGC-AGG (-UCACUAG- )CCUGC-G-U -UGAUUA-G- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU---G GA-UGAUgu- 5641 ggu-gagg-u cg-ccuagac ugg-ccac-u ggc------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --gc-cgug- 5761 ugg----ucg -ggaa-|gac -gcccaaacu ug-GnU-G-U CUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS L.anatifer 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26516 LOCUS LEZERRNAA 1869 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Lepas anatifera 18S ribosomal RNA (18S rRNA). ACCESSION L26516 KEYWORDS 18S ribosomal RNA. SOURCE Lepas anatifera rRNA. ORGANISM Lepas anatifera Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiura; Thoracica. REFERENCE 1 (bases 1 to 1869) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603457 FEATURES Location/Qualifiers source 1..1869 /organism="Lepas anatifera" /sequenced_mol="rRNA" rRNA 1..1869 /gene="18S rRNA" /note="putative" /product="18S ribosomal RNA" BASE COUNT 450 a 431 c 530 g 439 t 19 others ORIGIN BASE COUNT 450 a 431 c 530 g 439 t 4053 others ORIGIN 1 |--------- -------nnn nnn(nnn)nC CU|GCCAGU- A-GUGA-UAU --GCUUGUCU 61 UAAA|-GACU AA-GCCAUGC A-UGUAU-CA GU|------- |--------- ----[----- 121 acaagcc--- -------u-- ---------- ---------- aacuaaggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gauu-- ----uacugg 241 ccga<----- ---------- ---------- ---------- ---------- --gacaguga 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcgccuuuc -aa|auaucu gc|--CUU-A UCA--GCUCU C-GACGGUU- 1141 GG(-CUAGUG G)CUG-ACCG U-|GGCAC-U GAC|GGGU-A A-CGGG|GAA -U-(CUGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -ACUCCc-a( ---guu--)c 1321 aGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CUUACAGAGg -UCUC(---- guuaacc)GA GAUCU-CUCA A-ACGGAAU- 1501 ------GAGU ----ACAACG -UGAA--UCC UUU---AA-C GA-GGAUC-- ----->GACU 1561 GGAG|GG-CA A-GC-C-UGG U-G(gCA-Gg -AGgC|GC-G Gu-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc---- --agu-gugg u-nca--gca ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- --cgaca--- -----ugc-- 1861 ccggu-g--c guuauggcg- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 -uucucgcga ugacguccgg gcucccaaau gucgucuggc uacauucaau ggcgucggac 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc g-gcg--gcc guac-uucgg 2161 u-----ggg- ---------- ---------- -gccu-gc-c -ggc------ ---------- 2221 ---gaccggc ggu------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------g-UU ACCUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCuc ---------- ---------- ---------- ---------- 2521 -ucaauGGCU GUAUnc-au- aUUCAUGGAA -------|UU -GGAGAA-UA -CGUcCcugg 2581 CUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-GAUU 2821 -UG-GUUGGU -UU-Ug---- ----agag-- -ucgaA-GG- G-AAA-UnAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGAGGCA UU|--CGUAU UGCGACG-CG -AGGG(GU-G AAA---)UCC U-GUGA-C-C 3061 nUCGC-GCG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-GA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACGAUGUC GAC|CA|--- 3421 --gcaau-cc gcaac-g-gu c---(---ac ucaaag---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ug-cgg-g -c-agcuuuc ---------- ----ccGG(a 3661 gaaa-)UCA- -GAGUG-uuc gGAC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGn ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUnACCAGG CC[cgg-aca 4081 ccgu-aagga uugacaga(c ugauagc)-- --ucucccuu gaun-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GCA(-CUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAACGAG ACUCU-Gu|- ---------- 4321 ------(--- --)[CCU-AU UAAacuuga- -ugccacc-- -anuccuuau gu----gacu 4381 gggguaugcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gauc-auc-g -g-c(----- 5041 -guccca-)g ccga---agg AAAG-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGUGUU ACACU--G-A AGUGG----- ---------- 5281 ---------- -----[ucag cgcgccguuc aacgu----- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---cccg--c ucc(gaga-) ggagu----g ggcaaa-cgu uugaac]--- ---------- 5461 -------CCU UUU-C-G--- UGAU-G-GGA AUUGGGGGU( UGCAAUUG)U CCCCCAUG-a 5521 aCGAGG-AAU U--CCAAGUA AG-CGC-AGG (-UCACUAG- )CCUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU---G GA-UGAUuu- 5641 ggu-gagg-u cg-ccuagac ugg-ccac-u ggc------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --gc-cgug- 5761 ugn----ccg -ggaa-|gac -gcccaaacu ug-GUC-G-U CUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS B.purpurea 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26511 LOCUS BEDERRNAA 1830 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Berndtia purpurea 18S ribosomal RNA (18S rRNA). ACCESSION L26511 KEYWORDS 18S ribosomal RNA. SOURCE Berndtia purpurea rRNA. ORGANISM Berndtia purpurea Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Cirripedia; Acrothoracica; Pygophora. REFERENCE 1 (bases 1 to 1830) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603438 FEATURES Location/Qualifiers source 1..1830 /organism="Berndtia purpurea" /sequenced_mol="rRNA" rRNA 1..1830 /gene="18S rRNA" /note="putative" /product="18S ribosomal RNA" BASE COUNT 450 a 423 c 498 g 459 t ORIGIN BASE COUNT 450 a 423 c 498 g 459 t 4073 others ORIGIN 1 |--------- ---------- -GU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 acaggcc--- -------u-- ---------- ---------- aacuaaggcg ag-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uaccuuuc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu gc|--CUU-A UCA--GCUUU C-GAUGGUA- 1141 AU(-UUCUAU G)AUU-ACCA U-|GGCAA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAGACGGG- -ACUC(---- ---uacc)GA GGCCU-CGCC A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gu-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuc---- --agu-guua g-acgg-ucg gug-ugcc-- -(gccc---- ---------- 1801 ---------- )---ggc-au --uac-uguc cg-ua---cu --gaaccgcc cgc------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----cguug 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ca g-ucuccagu gcuc-uucac 2161 u-----gag- ---------- ---------- -uguu-gg-a cgau------ ---------- 2221 ---ugccggu ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCCA-A G--CAGGCgu ---------- ---------- ---------- ---------- 2521 --uuccGCCU GAAUau-cu- gUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-Uc---- -----gga-- -acuuG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU GGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-CAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --gcgau-cc guc-gcc-gu u---(---ac uugcau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-ugu cGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |CCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-CA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAaauagg- -aggcacu-- -uuu-ucuu- -------aga 4381 gugucgcgcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gauc-agc-g -g-c(----- 5041 --gucua-)g ccgc---acg AGAU-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGGA----- ---------- 5281 ---------- -----[ucag cgug-uuuuu ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---cccu--c ucc(gaga-) ggagc----g gguaacccga -ugaac]--- ---------- 5461 -------CCC CUU-C-G--- UGAU-A-GGA AUUGGGGCU( UGCAAUUA)U UCCCCAUG-a 5521 aCGAGG-AAU U--CCCAGUA AG-UGC-CAG (-UCAUCAG- )CUGGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-CGAUuu- 5641 agu-gagg-a cc-ucgga-c ugg-aguucg ca-ucggcgu c--------- ---------- 5701 -------(au cguc--)--- ---------- ---------- ---------g acgc-gcuu- 5761 cu-----ucg -ggaa-|gac -guccaaacu ug-AUC-G-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UU~~~~~~ ~~~~~~~~|| ||| // LOCUS T.lampas 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26520 LOCUS TRWERRNAA 1835 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Trypetesa lampas 18S ribosomal RNA (18S rRNA). ACCESSION L26520 KEYWORDS 18S ribosomal RNA. SOURCE Trypetasa lampas rRNA. ORGANISM Trypetasa lampas Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Cirripedia; Acrothoracica; Apygophora. REFERENCE 1 (bases 1 to 1835) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603469 FEATURES Location/Qualifiers source 1..1835 /organism="Trypetasa lampas" /sequenced_mol="rRNA" rRNA 1..1835 /gene="18S rRNA" /note="putative" /product="18S ribosomal RNA" BASE COUNT 447 a 421 c 488 g 451 t 28 others ORIGIN BASE COUNT 447 a 421 c 488 g 451 t 4096 others ORIGIN 1 |--------- ---------- nnn(nnn)nC CU|GCCAGU- A-GnCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAnnC A-UGUCn-AA GU|------- |--------- ----[----- 121 acaggcc--- -------u-- ---------- ---------- aacuaaggcg ag-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uaccuuuc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|augucu gc|--CUU-A UCA--GCUUU C-GAUGGUA- 1141 AU(-UUCUAU G)AUU-ACCA U-|GGCAA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-U AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAGACGGG- -ACUC(---- ---uacc)GA GGCCU-CGCC A-UUGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-- Gu-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuc---- --agu-guua g-acga-ucg guc-cgcc-- -(gccc---- ---------- 1801 ---------- )---ggn-nn c-gannunau cg-ua---cu --gcaccgu- -------ccg 1861 ccguu----- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------g 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ca g-ucuccagu gcuc-uucau 2161 u-----gag- ---------- ---------- -uguu-gg-a cgau------ ---------- 2221 ---ugccggu ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCCA-A G--CAGGCgu ---------- ---------- ---------- ---------- 2521 --uuccGCCU GAAUau-cu- gUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-Uc---- -----gga-- -acucG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU GGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-nAG- A-CGAnCU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --acgau-cc guc-gcc-gu u---(---ac uugcau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u c-gg-cgg-g -c-ngcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUU-ugu cGGU|-U|C- CnGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 nnnnUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAAG GC[cgg-aca 4081 ccgg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-CA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAaauaac- -aggnacu-- -uuu-ucuu- -------aga 4381 gugucgugcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- ganc-acg-g -c-g(----- 5041 -ucuagc-)c gcac---acg AGAU-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGGA----- ---------- 5281 ---------- -----[ucag cgug-ucucu ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---cccu--c ucc(gaga-) ggagc----g gguaacccgu -ugaac]--- ---------- 5461 -------CCC CUU-C-G--- UGAU-A-GGA AUUGGGGCU( UGCAAUUA)U UCCCCAUG-a 5521 aCGAGG-AAU U--CCCAGUA AG-UGC-CAG (-UCAUCAG- )CUGGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUAgCA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-CGAUuu- 5641 agu-gagg-a cc-ucgga-c ugg-aguucg ca-ucggcgu a--------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ------u-cg acgc-gcuu- 5761 cu-----ucg -ggaa-|gac -guccaaacu ug-AUC-G-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS T.stalacti 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26519 LOCUS TEKERRNAA 1855 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Tetraclita stalactifera 18S ribosomal RNA (18S rRNA). ACCESSION L26519 KEYWORDS 18S ribosomal RNA. SOURCE Tetraclita stalactifera rRNA. ORGANISM Tetraclita stalactifera Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiura; Thoracica; Balanomorpha; Tetraclitidae. REFERENCE 1 (bases 1 to 1855) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603468 FEATURES Location/Qualifiers source 1..1855 /organism="Tetraclita stalactifera" /sequenced_mol="rRNA" rRNA 1..1855 /gene="18S rRNA" /note="putative" /product="18S ribosomal RNA" BASE COUNT 381 a 396 c 492 g 405 t 181 others ORIGIN BASE COUNT 381 a 396 c 492 g 405 t 4229 others ORIGIN 1 |--------- ---------n nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |--------- ----[----- 121 nnnnnnn--- -------n-- ---------- ---------- nnnnnnnnnn nn-]------ 181 -----|---n nn|n-nnnn- nnnnn-nnnn nnnn-nnnn- nnn-nnnn-- ----nnnnnn 241 nnnn<----- ---------- ---------- ---------- ---------- -nnnnnnnnn 301 n>nnnnnn-n nnnnnnnnn( -n-nnnn)nn nnnnn-nn-- ---------- ---------- 361 ---------- ---------- ---------- -------cg- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- --agcccagu g-uc(----- -----ggcuc ucggguc--- 601 ---------- ---------- ---)ggn-cg gggc--|GCU UUUAUUGGn- -UGAA-A--- 661 accgaugauc gcc------- --(cucgc-- ---------- ---------- ---------- 721 ---------- ---------- --)------- -ggu-gguc- -guuauucga ug--AAUCAC 781 A-AUAACAUu gugu------ ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 -|GGA-UCGn --AU-GGU(- ----cuug-- ---------- --u----)AC CG--A-CGAC 1081 ---------> -gcgccuuuc -aa|auaucu gc|--CUU-A UCA--GCUCU C-GACGGUU- 1141 UG(-CUAGUG G)CUG-ACCG n-|GGCUC-U CAC|GGGU-A A-CGGG|GAA -U-(CUGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -ACUCCc-a( ---guu--)c 1321 aGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CUUACAGAGg -UCUC(---- guuaacc)GA GAUCU-CUCA A-ACGGAAU- 1501 ------GAGU ----ACAACG -UGAA--UCC UUU---AA-C GA-GGAUC-- ----->GACU 1561 GGAG|GG-CA A-GC-C-UGG U-G(CCA-GC -AGnC|GC-G Gu-AA)UUCC AG-|CUCCAG 1621 U-AGUGUA|U AUUAA--AGn UGUUG-CGG| UUA--AAAAG nUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc---- --agu-gcgu guccg--guc c--n-guaug ucuggcgucg ucgcucacgc 1801 gucgc---ug cugggcuccc a-aau-aucg gcug------ ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- -----gccgc auucaaucgu gccggauccg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc g-acg-ggcc gcuc-uccgg 2161 a-----ggg- ---------- ---------- -gccu-gu-u -ggc------ ---------- 2221 ---gaccggc gac------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------g-UU ACCUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCuc ---------- ---------- ---------- ---------- 2521 -ugaauGCCU GUAUac-au- aUUCAUGGAA -------|UU -GGAGAA-UA -CGUcCcugg 2581 CUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-GAUU 2821 -UG-GUUGGU -UU-Ug---- ----agag-- -ucgaA-GG- G-AAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGAGGCA UU|--CGUAU UGCGACG-CG -AGGG(GU-G AAA---)UCC U-GUGA-C-C 3061 GUCGC-ACG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-GA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACGAUGUC GAC|CA|--- 3421 --gcaau-cc gcaac-g-gu c---(---ac uacacg---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ug-cgg-g -c-agcuucc ---------- ----ccGG(g 3661 gaaa-)CCA- -GAGUU-uuu gGAC|-U|C- CGGGGGAAUU AU--GG-UU( --GCAA-)AG 3721 CUU-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-UAAGUUG (ACUCAA-CU )CGGG--ACA ACUCACCAGG CC[cgg-aca 4081 ccgu-aagga uugacaga(c ugauagc)-- --ucccucuu gauu-caguu gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUn|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAACGAG ACUnU-GG|- ---------- 4321 ------(--- --)[CCU-AU UAAacuuga- -cgcugcc-- -agucucuug u-----gacu 4381 gcggcgcgcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gauc-auc-g -g-c(----- 5041 -guccca-)g ccga---agg AAAG-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGUGUU ACACU--G-A AGUGG----- ---------- 5281 ---------- -----[ucag cgcgccguuc aacg------ ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--c ucc(guga-) ggagc----g ggcaaa-cgu uugaac]--- ---------- 5461 -------CCU UUU-C-G--- UGAU-G-GGA AUUGGGGGU( UNCAAUUG)U CCCCCAUG-n 5521 nCGAGG-AAU U--CCAAGUA AG-CGC-AAG (-UCACUAG- )CUUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCUU CGCUAC-n-A CC-GAU---G GA-UGAUuu- 5641 ggu-gagg-u cg-ccuagac ugg-cugc-u ggc------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --nc-cgun- 5761 cgn----nng -ggaa-|gac -gcccaaacu ug-GUC-G-U CUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-G-C CGUAGG(UGA A)CCUGGGGU UGGAUCA--- 5881 --UUAu~~~~ ~~~~~~~~|| ||| // LOCUS C.villosa 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26513 LOCUS CTIERRNAA 1862 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Calantica villosa 18S ribosomal RNA (18S rRNA). ACCESSION L26513 KEYWORDS 18S ribosomal RNA. SOURCE Calantica villosa rRNA. ORGANISM Calantica villosa Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiura; Thoracica. REFERENCE 1 (bases 1 to 1862) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603443 FEATURES Location/Qualifiers source 1..1862 /organism="Calantica villosa" /sequenced_mol="rRNA" rRNA 1..1862 /note="18S rRNA; putative" BASE COUNT 438 a 418 c 541 g 454 t 11 others ORIGIN BASE COUNT 438 a 418 c 541 g 454 t 4052 others ORIGIN 1 |--------- ---------n gg-(UGA)nC CU|GCCAGU- A-GUGA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUAU-GA GU|------- |--------- ----[----- 121 acaagcc--- -------u-- ---------- ---------- gauuaaggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gauu-- ----uccugg 241 ccga<----- ---------- ---------- ---------- ---------- --gacaguga 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcgccuuuc -aa|auaucu gc|--CUU-A UCA--GCUCU C-GACGGUU- 1141 UG(-CUAGUG G)CUG-ACCG U-|GGCUC-U GAC|GGGU-A A-CGGG|GAA -U-(CUGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -ACUCCc-a( ---guu--)c 1321 aGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CUUACAGAGg -UCUC(---- guuaacc)GA GAUCU-CUCA A-ACGGAAU- 1501 ------GAGU ----ACAACG -UGAA--UCC UUU---AA-C GA-GGAUC-- ----->GACU 1561 GGAG|GG-CA A-GC-C-UGG U-G(nCA-GC -AGCC|GC-G Gu-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGC UnUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc---- --agu-gcgu g-ucc--ggu ccgguauguc cggcguggug gcuuuuguug 1801 ccugc---cg ggcucccaaa u-auc-ggnu ggccgcauuc aauggugccg gauccg---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc g-acg-ggcc gcuc-uucgg 2161 g-----ggg- ---------- ---------- -gccu-gu-u -ggc------ ---------- 2221 ---gaccggu gac------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------g-UU ACCUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCuc ---------- ---------- ---------- ---------- 2521 -ugaauGCCU GUAUac-au- aUUCAUGGAA -------|UU -GGAGAA-UA -CGUcCcugg 2581 CUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-GAUU 2821 -UG-GUUGGU -UU-Ug---- ----agag-- -ucgaA-GG- G-AAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGAGGCA UU|--CGUAU UGCGACG-CG -AGGG(GU-G AAA---)UCC U-GUGA-C-C 3061 GUCGC-ACG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-GA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAnA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACGAUGUC GAC|CA|--- 3421 --gcaau-cc ncacc-g-au c---(---nc uauacg---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ug-cgg-g -c-agcuucc ---------- ----ccGG(a 3661 gaaa-)CCA- -GAGUG-ucu gGAC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUCACCAGG CC[cgg-aca 4081 ccgu-aagga uugacaga(c ugauagc)-- --ucucucuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CCU-AU UAAaauugc- -cggcgcuuu agucuugag- ------ggac 4381 ucgucgcgcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gauc-auc-g -g-c(----- 5041 -guccca-)g ccga---agg AAAG-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGUGUU ACACU--G-A AGUGG----- ---------- 5281 ---------- -----[ucag cgcgccguuc aacg------ ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---ucca--c ucc(guga-) ggagc----g ggcaaa-cgu uugaac]--- ---------- 5461 -------CCU UUU-C-G--- UGAU-G-GGA AUUGGGGGU( UGCAAUUG)U CCCCCAUG-a 5521 aCGAGG-AAU U--CCAAGUA AG-CGC-AGG (-UCACUAG- )CCUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU---G GA-UGAUuu- 5641 ggu-gagg-u cg-ccuagac ugg-ncgc-u gg-------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- ---g-cgug- 5761 ugg----ncg -ggaa-|gac -gcccaaacu ug-GUC-G-U CUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGUGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.fragilis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26515 LOCUS CMHERRNAA 1871 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Chthamalus fragilis 18S ribosomal RNA (18S rRNA). ACCESSION L26515 KEYWORDS 18S ribosomal RNA. SOURCE Chthamalus fragilis rRNA. ORGANISM Chthamalus fragilis Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiura; Thoracica; Balanomorpha. REFERENCE 1 (bases 1 to 1871) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603442 FEATURES Location/Qualifiers source 1..1871 /organism="Chthamalus fragilis" /sequenced_mol="rRNA" rRNA 1..1871 /gene="18S rRNA" /note="partial 18S rRNA; putative" /product="18S ribosomal RNA" BASE COUNT 390 a 394 c 481 g 409 t 197 others ORIGIN BASE COUNT 390 a 394 c 481 g 409 t 4229 others ORIGIN 1 |--------- ---------n nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnnnnn n-nnnnn-nn nn|------- |--------- ----[----- 121 nnnnnnn--- -------n-- ---------- ---------- nnnnnnggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCA-CAUU AAAU-cagn- uau-uanc-- ----uacugg 241 ccga<----- ---------- ---------- ---------- ---------- --gacaguga 301 u>nCAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcgccuuuc -aa|auaucu gc|--CUU-A UCA--GCUCU C-GACGGUU- 1141 UG(-CUAGUG G)CUG-ACCG C-|GGCUC-U GAC|GGGU-A A-CGGG|GAA -U-(CUGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -ACUCCc-a( ---guu--)c 1321 aGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CUUACAGAGg -UCUC(---- guuaacc)GA GAUCU-CUCA A-ACGGAAU- 1501 ------GAGU ----ACAACG -UGAA--UCC UUU---AA-C GA-GGAUC-- ----->GACU 1561 GGAG|GG-CA A-GC-C-UGG U-G(CCA-GC -AGCC|GC-G Gn-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc---- --agu-gcgu g-ucc--ggu ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------c cgguaugccc gggggcggcg cucgcgcguc acugcugggc ucccaaauau 1921 cggnuggccg cauucaaucg ugccggaucc g--------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc g-acg-ggcc gcuc-uucgg 2161 a-----ggg- ---------- ---------- -gccu-gu-u -ggc------ ---------- 2221 ---gaccggc gac------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------g-UU ACCUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCuc ---------- ---------- ---------- ---------- 2521 -uuuauGCCU GUAUac-au- aUUCAUGGAA -------|UU -GGAGAA-UA -CGUcCcugg 2581 CUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-GAUU 2821 -UG-GUUGGU -UU-Ug---- ----agag-- -ucgaA-GG- G-AAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGAGGCA UU|--CGUAU UGCGACG-CG -AGGG(GU-G AAA---)UCC U-GUGA-C-C 3061 GUCGC-ACG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUUCC-GA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAU-U|CA- A-GAGCGAAA 3301 GUUAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--UCC-GU AAACGAUGUC GAC|CA|--- 3421 --ucaau-cc ncaac-g-gu c---(---ac uacacg---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ug-cgg-g -c-agcuucc ---------- ----ccGG(a 3661 gaaa-)CCA- -GAGUG-uau gGAC|-U|C- CGGGGGAAGU AU--Gnnnn( --nnnn-)nn 3721 nnnnnnnnnn -nnnnnnnnn -nnn|nnnnn nnn-nnnnn- -nnnn-nnnn ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --n-nn|-nn 4021 nnnnnnnn|n nn-nnnnnnn (nnnnnn-nn )nnnn--nnn nnnnnnnnnn nn[nnn-nnn 4081 nnnn-aagga uugacaga(c ugauagc)-- --ucucucuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |CCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAACGAG ACUCU-Gc|- ---------- 4321 ------(--- --)[CCU-AU UAAacuugu- -cuccguc-- -agucucuug u-----gacu 4381 gcggugcgcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gauc-auc-g -g-c(----- 5041 -guccca-)g ccga---agg AAAG-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGUGUU ACACU--G-A AGUGG----- ---------- 5281 ---------- -----[ucag cgcgccguuc aacg------ ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uccca--c ucc(guga-) ggagc----g ggcaaa-cgu uugaac]--- ---------- 5461 -------CCU UUU-C-G--- UGAU-G-GGA AUUGGGGGU( UGCAAUUG)U CCCCCAUG-a 5521 aCGAGG-AAU U--CCAAGUA AG-CGC-AGG (-UCACUAG- )CCUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU---G GA-UGAUuu- 5641 ggu-gaga-u cg-ccuagac ugg-cagc-u ggc------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --gc-cgun- 5761 cun----ccg -ggaa-|gac -gcucaaacu ug-GUC-G-U CUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CAUAGG(UGA A)CCUGnGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS C.patula 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L26514 LOCUS CBIERRNAA 1870 bp ss-rRNA RNA 20-DEC-1994 DEFINITION Chelonibia patula 18S ribosomal RNA (18S rRNA). ACCESSION L26514 KEYWORDS 18S ribosomal RNA. SOURCE Chelonibia patula rRNA. ORGANISM Chelonibia patula Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiura; Thoracica; Balanomorpha; Coronulidae. REFERENCE 1 (bases 1 to 1870) AUTHORS Spears,T., Abele,L.G. and Applegate,M.A. TITLE Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis JOURNAL J. Crust. Biol. 14, 641-656 (1994) STANDARD full automatic COMMENT NCBI gi: 603441 FEATURES Location/Qualifiers source 1..1870 /organism="Chelonibia patula" /sequenced_mol="rRNA" rRNA 1..1870 /gene="18S rRNA" /note="putative" /product="18S ribosomal RNA" BASE COUNT 433 a 444 c 547 g 442 t 4 others ORIGIN BASE COUNT 433 a 444 c 547 g 442 t 4037 others ORIGIN 1 |--------- ---------n nGU(UGA)UC CU|GCCAGU- A-GUGA-UAU --GCUUGUCU 61 UAAA|-GAUU AA-GCCAUGC A-UGUAU-CA GU|------- |--------- ----[----- 121 acaagcc--- -------g-- ---------- ---------- cacuaaggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-uauu-- ----uacugg 241 ccga<----- ---------- ---------- ---------- ---------- --gacaguga 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcgccuuuc -aa|auaucu gc|--CUU-A UCA--GCUCU C-GACGGUU- 1141 UG(-CUAGUG G)CUG-ACCG U-|GGCUC-U GAC|GGGU-A A-CGGG|GAA -U-(CUGG-) 1201 GUU-CGGUU- CCG|GAGAGG G-AGCC(U-G AGAGAU)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AACUU-ACCC -ACUCCc-a( ---guu--)c 1321 aGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC CUUACAGAGg -UUUC(---- guuaacc)GA GAUCU-CUUA A-ACGGAAU- 1501 ------GAGU ----ACAACG -UGAA--UCC UUU---AA-C GA-GGAUC-- ----->GACU 1561 GGAG|GG-CA A-GC-C-UGG U-G(CCA-GC -AGCC|GC-G Gu-AA)UUCC AG-|CUCCAG 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauauc---- --agu-gcgu g-ucc--ggg ccgguacgcc cggng----- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---guggcgu 1981 ucgcgcgucg cugcugggcu cccaaguauc gguuggccgc auucaauggu gccggacccg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc g-cgg-gccu guuc-ucuga 2161 a-----ggg- ---------- ---------- -gcuc-gu-c -ggc------ ---------- 2221 ---gaccggc gac------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------g-UU ACCUUG-AAC A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCuc ---------- ---------- ---------- ---------- 2521 -uguacGCCU GUAUac-au- aUUCAUGGAA -------|UU -GGAGAA-UA -CGUcCcugg 2581 CUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-GAUU 2821 -UG-GUUGGU -UU-Ug---- ------ugag -ucgaA-GG- G-AAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CUGA ---------- 3001 --CGGAGGCA UU|--CGUAU UGCGACG-CG -AGGG(GU-G AAA---)UCC U-GUGA-C-C 3061 GUCGC-ACG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-GA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAG-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-GU AAACGAUGUC GAC|CA|--- 3421 --gcaau-cc gcaac-g-gu c---(---ac aacacg---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-u g-ug-cgg-g -c-agcuuuc ---------- ----ccGG(g 3661 gaaa-)CCA- -GAGUG-ucu gGAC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCUUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--ACA ACUCACCAGG CC[cgg-aca 4081 ccgu-aagga uugacaga(c ugauagc)-- --ucucucuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CCU-AU UAAacuuga- -cgccguc-- -gguccgcuu gu----gacc 4381 gcggugcgcu ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gauc-auc-g -g-c(----- 5041 -guccca-)g ccga---agg AAAU-GGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGUGUU ACACU--G-A AGUGG----- ---------- 5281 ---------- -----[ucag cgcgccguuc aacg------ ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--c ucc(guga-) ggagc----g ggcaaa-cgu uugaac]--- ---------- 5461 -------CCU UUU-C-G--- UGAU-G-GGA AUUGGGGGU( UGCAAUUG)U CCCCCAUG-a 5521 aCGAGG-AAU U--CCAAGUA AG-CGC-AGG (-UCACUAG- )CCUGC-G-U -UGAUUAAG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU---G GA-UGAUuu- 5641 ggu-gagg-u cg-ccuagac ugc-cugc-u ggc------- ---------- ---------- 5701 -------(uu cg----)--- ---------- ---------- ---------- --nc-cgug- 5761 cgg----ccg -ggaa-|gac -gcccaaacu ug-GUC-G-U CUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS P.argus 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U19182 LOCUS PAU19182 1872 bp DNA INV 16-JAN-1995 DEFINITION Panulirus argus 18S ribosomal RNA gene. ACCESSION U19182 KEYWORDS . SOURCE Bermuda, Caribbean, or Florida Spiny Lobster. ORGANISM Panulirus argus Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Protostomia; Arthropoda; Crustacea; Malacostraca; Eucarida; Decapoda; Pleocyemata; Palinura; Palinuridae; Panulirus. REFERENCE 1 (bases 1 to 1872) AUTHORS Trapido-Rosenthal,H.G., Coates,K.A., Kinloch,A., McDowell,L. and Halanych,K.M. TITLE Molecular Phylogeny of marine annelids and arthropods from Bermuda JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1872) AUTHORS Trapido-Rosenthal,H.G. TITLE Direct Submission JOURNAL Submitted (28-DEC-1994) Henry G. Trapido-Rosenthal, Bermuda Biological Station for Research, Inc., 17 Biological Lane, Ferry Reach, St. George GE-01, Bermuda STANDARD full automatic COMMENT NCBI gi: 624226 FEATURES Location/Qualifiers source 1..1872 /organism="Panulirus argus" /dev_stage="larva" rRNA 1..1872 /product="18S ribosomal RNA" BASE COUNT 463 a 444 c 505 g 460 t ORIGIN BASE COUNT 463 a 444 c 505 g 460 t 4031 others ORIGIN 1 |--------- --------CU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |--------- ----[----- 121 acaggcc--- -------g-- ---------- ---------- acuuaaggcg aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gauu-- ----cauugg 241 aucu<----- ---------- ---------- ---------- ---------g uaaacccacu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|gugucu gc|--CUU-A UCA--GCUUU C-GAUUGUA- 1141 GG(-UUAUGC G)CCU-ACAA U-|GGCUA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCGAG- -ACUC(---- ---aucc)GA GGCCU-CGCA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gu-AA)UUCC AG-|CUCCAA 1621 U-AGUGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuuc---- --agu-uccg g-agug-acg gu-u--ca-- ---------- ---------- 1801 ---cc---cc c---cggugc cu-ac-ucuc ac-gcu--cc --gaacagcc gcaccccgc- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ------ccgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uu g-cac-gggg uguc-uucau 2161 c-----gag- ---------- ---------- -uguc-cc-g -agu------ ---------- 2221 ---ggccggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAG-A G--CAGGCug ---------- ---------- ---------- --------uu 2521 ugaaugGCUU GAAUgu-c-u aUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-Uc---- -----gga-- -acccG-AG- G-UAA-UGAC UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGG ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCU GAC|UA|--- 3421 --gcgau-cc gcc-ggc-gu u---(---au ucccau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUC-uuu gAGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA UCUCACCCGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugagagc)-- --ucuuucuc gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CUGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AU UAAcuagucg acggaucu-- -cca-gcaug cucc-g-ugg 4381 uguccaguac gcaacuucu- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gaua-agc-g -g-c(----- 5041 aauucua-)g ccgc---acg AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGGA----- ---------- 5281 ---------- -----[ccaa cgug-uugu- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 ---cccc--c ucc(gaga-) ggagc----g gguaacccgu -ucaaa]--- ---------- 5461 -------CCC CUU-C-A--- UGAU-A-GGG AUUGGGGCU( UGCAAUUG)U UUCCCAUG-a 5521 aCGAGG-AAU U--CCCAGUA AG-CGC-AAG (-UCAUUAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-- cu-ucgga-c cgg-cgcu-- cuuggaug-- -uugua-cc- ---------- 5701 -----ccucc cc--cgcaag ggugcuu--- -------gga gguguuc-uc gccu-ggag- 5761 cug----acg -gaaa-|gau -guccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CAUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS O.inermis 5903 bp RNA RNA 11-JAN-191 DEFINITION Oedignathus inermis. ACCESSION No information KEYWORDS No information. SOURCE Oedignathus inermis. ORGANISM Oedignathus inermis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z14062 ID OI18SRDN standard; DNA; INV; 1883 BP. DT 16-JUL-1992 (Rel. 32, Created) DT 16-JUL-1992 (Rel. 32, Last updated, Version 1) OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca; OC Eucarida; Decapoda; Lithodidae. RN [1] RC (sites) RA Kim W., Min G., Kim S.; RT "The 18S rDNA Sequences of a Crustacean Decapod Oedignathus RT inermis : a Comparison with Artemia salina Gene"; RL Unpublished. BASE COUNT 468 a 439 c 507 g 469 t 4020 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUGU-AA GU|------- |--------- ----[----- 121 acaagcc--- -------g-- ---------- ---------- auguaaggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-guuu-- ----cauugg 241 aacu<----- ---------- ---------- ---------- ---------g uacccccacu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gcaucuuuc -aa|gugucu gc|--CUU-A UCA--GCUUU C-GAUUGUA- 1141 GG(-UUAUUC G)CCU-UCCA U-|GGCUA-U UAC|GGGU-u A-CGGG|gaa -uu(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-U AGGAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGg-A- ---------| GGG-AC-GU- AAAUU-ACCC -AUUUCC-A( ---gac--)C 1321 GGGG-A-GGU -|A|GUGACG GAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCGAG- -ACUC(---- ---aucc)GA GGCCU-UGCA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGACC-- ----->CAUU 1561 GGAG|GGgCA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GUUAa)UUCC AG-|CUCCAA 1621 U-A-CGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG -UCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuac---- --agu-uccg g-acug-acg gu--uacc-- -(gccc---- ---------- 1801 ---------- )---ggu-gc uu-ac-uguc ac-gcu--cc --gaaca--- -----gccug 1861 aaacau---- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- --gg------ ---------- 2221 ---gcccg-- gcggcucgcc ggggugcucu uuaccgagug ucccgagugg ccggcau--- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAG-A G--CAGGCUa ---------- ---------- ---------- -------cau 2521 gaauuGGCCU GAAUGu-c-u AUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUCGGU -UU-UC---- --uucgga-- -acccG-AG- G-UAA-UGAC UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAA|CAAG g--------- 3001 --CGGGGGUA UU|--AGUAC U-CGA-G-CC -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CUUACA-A CUGC(--AAA )--GU|A--- UUUACC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCU GAC|UA|--- 3421 ---cgau-cc gcc-ggc-gu u---(---au ucccau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-- c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUC-uuu gAGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 --CAUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUCACCAGG CC[cag-aca 4081 cugg-aagga uugacaga(u ugagagc)-- --ucuuucuc gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AU UAAcuagucg acggaucu-- -cca-gcaau -------ugg 4381 uguccagu-c gcaacuucu- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GAUA--ac-g -g-c(----a 5041 acucuaa-)g ccgc---acg AGAauUGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU UUGG--CCGA A-CCC-CGCU ACACU--G-A AGGGA----- ---------- 5281 ---------- -----[ucag cguguug--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccc--c ucc(gaga-) ggagc----g gguaacccua -ugaaa]--- ---------- 5461 -------CCC CUU-C-A--- UGAU-A-GGG AUUGGGGCU( UGCAAUUG)U UUCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-AAG (-UCAUCAG- )CUUGC-G-U -UGAUUACC- 5581 G-UCCUGCCC U-|UGUA-CA CACC-CCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gag--- cu-ucgga-c ugc--gcucu uggauguccg gccguuccc- ---------- 5701 -----gccgu cu--ucucuc ugagggggc- gguggucgcg gguuccggcc cu---cggg- 5761 cug----acg -gaaa-|gau -guccaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)-CUGCGGA AGGAUCA--- 5881 --uua~~~~~ ~~~~~~~~|| ||| // LOCUS P.pisum 5903 bp RNA RNA 11-JAN-191 DEFINITION Philyra pisum. ACCESSION No information KEYWORDS No information. SOURCE Philyra pisum. ORGANISM Philyra pisum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z25817 ID PP18SRRN standard; DNA; INV; 1871 BP. DT 01-SEP-1993 (Rel. 36, Created) DT 01-SEP-1993 (Rel. 36, Last updated, Version 1) OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca; OC Eucarida; Decapoda; Pleocyemata; Brachyura; Oxystomata; OC Leucosioidea; Leucosiidae. RN [1] RC (sites) RA Min G.S., Kim S.H., Moon S.Y., Kim W.; RT "The nucleotide sequences of 18S ribosomal RNA gene of the RT crustacean decapod Philyra pisum: longer sequences of decapods in RT V9 region"; RL Unpublished. BASE COUNT 467 a 450 c 505 g 449 t 4032 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUUC 61 UCAA|aGAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 acaagcc--- -------g-- ---------- ---------- auuuaaggcg ga-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-gauu-- ----cauagg 241 aucu<----- ---------- ---------- ---------- ---------g uacccacacu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -gccucuuuc -aa|gugucu gc|--CUU-A UCA--GCUUU C-GAUUGUA- 1141 GG(-UUAUAC G)CCU-ACAA U-|GGCUA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUUcgGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (UAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACC- -ACUCC--G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCGAG- -ACUC(---- ---aucc)GA GGCCU-CGCA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 UaGGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gauuua---- --agu-ucug g-acug-acg gu-ucacc-- -(gccc---- ---------- 1801 ---------- )---ggu-gc au-ac-uguc ac-gcu--cc --gaaca--- -----gccac 1861 aacag----- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --cccgcugg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------cu c-gcacgggg ucuc(uucau 2161 c----)gag- ---------- ---------- -uguc-cc-g -cgu------ ---------- 2221 ---ggccggc aga------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCUa ---------- ---------- ---------- --------ca 2521 cugacGGCCU GAAUGc-c-u AUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUCGGU -UU-UC---- -----uga-- -acccG-AG- G-UAA-UGAC UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GAAA|CAGG ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AG| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCU GAC|CA|--- 3421 --gcgau-cc gcc-ggc-gu u---(---au ucccau---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -AAGUC-uuu gGGU|-U|C- CGGG-GAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -GAAGg-GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --AaGU|-GG 4021 --CAUGCG|G CCuUAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCAGG CC[cag-aca 4081 ccgg-aagga uugacaga(u ugagagc)-- --ucuuucuc gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GC- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CCU-AC UAAcuagucc acggaucu-- -cca-gcaau -------ugg 4381 uguccaguuc gcaucuucu- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GAUA--ac-g -g-c(----- 5041 -aauucua)g ccgc---acg AGAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A AGGGA----- ---------- 5281 ---------- -----[ucaa cgugucc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccc--c ucc(gaga-) ggagc----g gguaacccgu -ugaaa]--- ---------- 5461 -------UCC UUU-C-A--- UGAU-A-GGG AUUGGGGUU( UGCAAUUG)U CUCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-AAG (-UCAUGAG- )CUUGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAUuu- 5641 agu-gagg-- cu-ucgga-c ugg-cgcu-c uug-gaug-- ---------- ---------- 5701 -------ucg gg---uccac gcgguuaac- -gccgcuggg cuuucggcgc cucg-a--g- 5761 cug----acg -gaaa-|gau -guccaaacu ug-AUC-A-U UUAG-AGG-A GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --uua~~~~~ ~~~~~~~~|| ||| // LOCUS B.longiros 5903 bp RNA RNA 11-JAN-191 DEFINITION Bosmina longirostris. ACCESSION No information KEYWORDS No information. SOURCE Bosmina longirostris. ORGANISM Bosmina longirostris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z22731 LOCUS BL18SRNAA 1875 bp RNA INV 17-MAY-1993 DEFINITION B.longirostris 18S ribosomal RNA. Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiopoda; Anomopoda; Bosminidae. REFERENCE 1 (bases 1 to 1875) AUTHORS Kim,W., Yoon,S. and Kim,J. TITLE The 18S ribosomal RNA gene of a crustacean branchiopod Bosmina longirostris: comparison with another branchiopod Artemia salina JOURNAL Unpublished BASE COUNT 455 a 403 c 533 g 484 t 4028 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-G-CA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 acagacc--- -------u-- ---------- ---------- ucauacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-uguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uacauac 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucuuuc -aa|auggcu gc|--CCU-A UCA--AUUUU C-GAUGGUA- 1141 GG(-UGACCU G)CCU-ACCA U-|GGUAA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACUC -AAUCCC-G( ---gca--)C 1321 GGGG-A-AGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAGACGGG- -ACUC(---- --uuuau)GG GCCUC-CGAC A-UCCGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)CUCC AG-|CUCCAG 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucug---- --ggu-ugca u-ggcu-gca cg--cuau-- -(gguua--- ---------- 1801 ---------- )---gug-uu ua-ca-ggug ccgguugcuu g-cauug--- -----c---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------a 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug c-ucuucgau gccu(uuaac 2161 u----)ggg- ---------- ---------- -uguc-g--g -gac------ ---------- 2221 ---agacggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCCg ---------- ---------- ---------- ---------- 2521 --uagUGCCU GAAAAg-uc- UUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -AUCCG-AA- G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAA ---------- 3001 --CGGGGGCA UU|---GUAU GGCGGCG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-CAGg A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CU- G-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gcg-gug-ug c---(---ua u-cuuu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----ggc-c c-cg-cgg-g ---agucc-- ---------- ----ccGG(- 3661 GAAA-)CCu- uAAGUC-uuu gGGC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugagagc)-- --ucuuucau gauu-cggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- G-U-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-GG|- ---------- 4321 ------(--- --)[CCU-GC UAAauagugg ac-ccguccu cugugcuugu ccug-uuugc 4381 agua--ugcu gcgauccucg uggguugugg cggcucuuug caggcuugug cggugcgggu 4441 ggucacu--- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-a -g-c(----- 5041 -gggaca-)g cuac---acg AAGU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-UGUC CGGG-GCCG- A-CGUGCGCU ACAAU--G-A CGGUU----- ---------- 5281 ---------- -----[ucag ugaguuugg- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --acccu--g gcc(gaaa-) ggguu----g gguaaa-cug agccau]--- ---------- 5461 -------AAC CGU-C-G--- UGAC-U-GGG AUCGGGGCU( UGUAAUUG)U UCCCCGUG-A 5521 ACGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAC- )GUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agc-aagg-u ca-ucgga-u ugg-ugcc-a uug-gugg-u u--------- ---------- 5701 -------(-u cguacu)--- ---------- ---------- -----gccug uugg-u--g- 5761 ucg----aga -agac-|gac -gaccgaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUG~~~~~ ~~~~~~~~|| ||| // LOCUS D.galeata 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z23111 LOCUS DG18SRRNG 1939 bp RNA INV 28-JUN-1993 DEFINITION D.galeata mRNA for 18S ribosomal RNA ACCESSION Z23111 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Daphnia galeata ORGANISM Daphnia galeata Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Eucladocera; Daphniidae. REFERENCE 1 (bases 1 to 1939) AUTHORS Kim,J., Yoon,S. and Kim,W. TITLE The nucleotide sequences of the 18S ribosomal RNA gene of a crustacean branchiopod Daphnia galeata : Insertion sequences among branchiopods. JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1939) AUTHORS Kim,W. TITLE Direct Submission JOURNAL Submitted (24-JUN-1993) Kim W., Seoul National University, Molecular Biology, Shin-Lim-Dong, Kwan-Ak-Gu, Seoul, Korea, 151-742 STANDARD full automatic FEATURES Location/Qualifiers source 1..1939 /organism="Daphnia galeata" rRNA 1..1939 /product="18S ribosomal RNA" primer_bind order(1..19,1920..1939) /note="PCR primer" BASE COUNT 459 a 416 c 552 g 512 t ORIGIN BASE COUNT 459 a 416 c 552 g 512 t 3964 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAGA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 acagacc--- -------u-- ---------- ---------- ucauacggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagc- uau-uguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uacauac 301 u>ACAUGG-A UAACUGUAG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -ggaucuuuc -aa|auggcu gc|--CCU-A UCA--AUUUU C-GAUGGUA- 1141 GG(-UGACCU G)CCU-ACCA U-|GGUAA-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-ACCU(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GU- AAAUU-ACUC -AAUCC--g( ---gca--)c 1321 gGGG-A-AGU -|A|GUGACC AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AC GGAGACGGG- -ACUC(---- --uuuau)GG GCCUC-CGAC A-UCCGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAAC-- ----->AACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G Gu-AA)CUCC AG-|CUCCAG 1621 A-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucug---- --ggu-ugca u-ggcu-gca cg--cuau-- -(gguua--- ---------- 1801 ---------- )---gug-uu u--ggugccu uugugguacc ugggcugccu ggugucgcgg 1861 ucgugugauc uuucugccgu aucuguuuua caggugccgg uugcuugcaa ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ----uuggca 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug cucuu-cgau gccu-uuaac 2161 u-----ggg- ---------- ---------- -uguc-gg-g -agc------ ---------- 2221 ---agacggc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAC A--AAUUUGA 2461 GUGCUCAA-A G--CAGGCcg ---------- ---------- ---------- ---------- 2521 --uaguGCCU GAAAag-uc- uUGCAUGGAA -------|UA -AUGGAA-UA -GGAcUucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-Uc---- ------gg-- -auccG-AA- G-UAA-UGGU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAAA ---------- 3001 --CGGGGGCA UU|---GUAU GGCGGCG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-CAG- A-CAAACU-A CAGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UGA-U|CU- G-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UG|--- 3421 --acgau-cc gcg-gug-u- ----(--gcu aucuuug--) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------g-c c-cg-cgg-g -c-agucc-- ---------- ----ccGG(- 3661 GAAA-)CCcu uaAGUC-uuu gGGC|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 --CAUGCG|G CU-UAAUUCG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-gagga uugacaga(u ugagagc)-- --ucuuucau gauu-cggug gu-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUUU-GG|- ---------- 4321 ------(--- --)[CCU-GC UAAauagugg acccg-uccu c-ugugcu-- --------ug 4381 uccu----gu u-ugaguaug cugcgauccu cguggguugu ggcggcucuu ugcaggcuug 4441 ugcggugcgg guggucacu- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- gaca-agu-a -g-c(----- 5041 -gggaca-)g cuac---acg AAGU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 C-AGA-UGUC CGGG-GCCGC A-CGUGCGCU ACAAU--G-A CGGUU----- ---------- 5281 ---------- -----[ucag ugaguuugg- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --acccu--g gcc(gaaa-) ggguu----g gguaaa-cug -agcca]--- ---------- 5461 -------UAA CGU-C-G--- UGAC-U-GGG AUCGGGGCU( UGUAAUUG)U UCCCCGUG-a 5521 aCGAGG-AAU U--CCUGGUA AG-UGC-AAG (-UCAUAAC- )GUUGC-G-C -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CA-CGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agc-aagg-u ca-ucgga-u ugg-ugcc-a uug-gugg-u ---------- ---------- 5701 -------(uu cgu---)--- ---------- ---------- ------acug ccug-uu-g- 5761 gug----ucg -agaa-|gac -gaccgaacu ugcAUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Cro.korean 5903 bp RNA RNA 11-JAN-191 DEFINITION Crossodonthina koreana. ACCESSION No information KEYWORDS No information. SOURCE Crossodonthina koreana. ORGANISM Crossodonthina koreana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z36893 ID CKRIBRNA standard; RNA; INV; 1811 BP. XX AC Z36893; XX DT 23-AUG-1994 (Rel. 40, Created) DT 23-AUG-1994 (Rel. 40, Last updated, Version 1) XX DE C.koreana 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Crossodonthina koreana OC Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; OC Collembola; Neanuridae. XX RN [1] RL (sites) RL Hwang U., Kim W., Lee B.; RL "Sequences of 18S rDNAs of two Collembolan insects; shorter RL sequences in V4 and V7 regions"; RL Unpublished. RL RN [2] RP 1-1811 RL Hwang U.; RL ; RL Submitted (22-AUG-1994) to the EMBL/GenBank/DDBJ databases. RL Hwang U., "Seoul National University", "Molecular Biology", RL "Shin-Lim-Dong, Kwan-Ak-Gu", "Seoul", "Korea", "151-742" XX FH Key Location/Qualifiers FH FT source 1..1811 FT /organism="Crossodonthina koreana" FT rRNA 1..1811 FT /product="18S Ribosomal DNA" FT misc_feature 1..19 FT /note="5-terminal region of 18S rDNA and PCR primer FT sequences" FT misc_feature 1792..1811 FT /note="3'-terminal region of 18S rDNA and PCR primer FT sequences" XX SQ Sequence 1811 BP; 466 A; 372 C; 484 G; 489 T; 0 other; BASE COUNT 466 a 372 c 484 g 489 t 4092 others ORIGIN 1 |--------- -----UCCCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ucaagcg--- -------a-- ---------a ---------- aaauaaagug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---uacuuac 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucuuuc -aa|gugucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUAUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-A( ---gaa--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGA- -ACUC(---- ---auac)GA GGCUC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C AA-GGAUC-- ----->CAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUCAG--AAU UGUUG-UGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuc---- --ggu-uuca g-guga-aug gu--gcauc- -(uugc---- ---------- 1801 ---------- )--gaug-uu uu-ac-uauu ug-c----uu g-gacgauuu u----guugg 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------u 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc g-uucauagu ucuc(uuuac 2161 u----)gag- ---------- ---------- -ugcu-uu-g -agu------ ---------- 2221 ---ggccagc ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUGGA 2461 GUGCUCAA-A G--CAGGCGc ---------- ---------- ---------- ---------- 2521 --uacAGCCU GAACAu-ua- GUGCAUGGAA -------|UA -AUAGAA-UA -GGAuCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGC -UU-UC---- ------gg-- -agucG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAC UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGUC GAC|CA|--- 3421 --gcgau-cc guc-g-ucgu u---(---aa uuuua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-u c-ga-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -GAGUG-uuu gGAU|-U|C- CAGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA UCUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CCU-AU UAAcuagacg u-----uaua uccuauuaug gguu-ugacg 4381 augcu----- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACg-ggc-g -g-c(----- 5041 --uuuua-)g ccgc---acg AGAA-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A AGAAA----- ---------- 5281 ---------- -----[ucag cgugugc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--a ucc(gaaa-) ggau-----u ggaaauccgu -ugaac]--- ---------- 5461 -------CUU CUU-C-G--- UGAU-G-GGG AUUGGGGAU( UGCAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCAGU-A GG-CGC-GAG (-UCAUAAG- )CUUGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG AG-UGAUuu- 5641 agu-gagg-a cu-ucgga-c ugg-ucuucg aug-uggcu- ---------- ---------- 5701 -------(uu ac----)--- ---------- ---------- ------gguc gugu-cguu- 5761 gug----ccg -gaaa-|gau -gcccaaacu ug-AUU-A-C UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Hypogas.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Hypogastrura spp.. ACCESSION No information KEYWORDS No information. SOURCE Hypogastrura spp. ORGANISM Hypogastrura spp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z26765 ID HS18SRRNA standard; RNA; INV; 1812 BP. XX AC Z26765; XX DT 06-OCT-1993 (Rel. 37, Created) DT 06-OCT-1993 (Rel. 37, Last updated, Version 1) XX DE Hypogastrura sp. 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Hypogastrura sp. OC Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; OC Collembola; Hypogastruridae. XX RN [1] RC (sites) RA Kim W., Hwang U., Lee B., Park K.; RT "The 18S ribosomal RNA gene of a wingless insect, Hypogastrura RT sp.(insecta:Collembola): a comparison with Drosophila RT melanogaster"; RL Unpublished. XX RN [2] RP 1-1812 RA Kim W.; RT ; RL Submitted (06-OCT-1993) on tape to the EMBL Data Library by: RL Kim W., "Seoul National University", "Molecular Biology", RL "Shin-Lim-Dong, Kwan-Ak-Gu", "Seoul", "Korea", "151-742" XX FH Key Location/Qualifiers FH FT source 1..1812 FT /organism="Hypogastrura sp." FT rRNA 1..1812 FT /gene="18S ribosomal RNA" FT /product="18S ribosomal RNA" FT misc_RNA 1..19 FT /function="5'-terminal region of 18S rDNA and PCR primer FT sequences" FT misc_RNA 1793..1812 FT /function="3'-terminal region of 18S rDNA and PCR primer FT sequences" XX SQ Sequence 1812 BP; 457 A; 383 C; 496 G; 476 T; 0 other; BASE COUNT 457 a 383 c 496 g 476 t 4091 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |--------- ----[----- 121 ucaagcg--- -------a-- ---------- ---------- aaauaaagug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AUAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- ---cacuuac 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ---------- 361 ---------- ---------- ---------- -- -guaucuuuc -aa|gugucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUAUGC G)CCU-ACCA U-|GGUUG-U AAC|GGGUuA A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GAC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGG--A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGA- -ACUC(---- ---auac)GA GGCUC-CGUA A-UCGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-UGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuc---- --ggu-uuca g-augg-gcg gu--gcacc- -(uugc---- ---------- 1801 ---------- )--ggug-uu u--ac-uguc ug-u----uu g-gacgauu- -----uucuu 1861 gg-------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------u 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uc g-uucauggu ucuc(uuaau 2161 c----)gag- ---------- ---------- -ugcc-uu-g -agu------ ---------- 2221 ---ggccaac ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUGGA 2461 GUGCUCAA-A G--CAGGCGc ---------- ---------- ---------- ---------- 2521 --uacAGCCU GAACAu-ua- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAuCucgg 2581 UUC------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UC-GUUGGC -UU-UC---- ------gg-- -agucG-AG- G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAC UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGUC GAC|CG|--- 3421 --gcgau-cc guc-g-ucgu u---(---aa uauua----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-u c-ga-cgg-g -c-agccu-- ---------- ----ccGG(- 3661 GAAA-)CCA- -GAGUG-uuu gGAU|-U|C- CAGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAA--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA UCUCACCAGG CC[cgg-aca 4081 ccgg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauucaggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-GG|- ---------- 4321 ------(--- --)[CCU-AC UAAcuagacg u-----caga uccu-uuaug gguc-ugucg 4381 uagcu----- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACg-ggc-g -g-c(----- 5041 --guuua-)g ccgc---acg AGAA-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCUGC A-CGCGCGCU ACACU--G-A AGAAA----- ---------- 5281 ---------- -----[ucgg cgugugu--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --ucccu--a ucc(gaaa-) ggauu----g ggaagcccgu -ugaac]--- ---------- 5461 -------CUU CUU-C-G--- UGAU-G-GGG AUUGGGGAU( UGCAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU UG-CCAGU-A GG-CGC-GAG (-UCAUAAG- )CUUGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--CG AG-UGAUuu- 5641 agu-gagg-a cu-ucgga-c ugg-ucuucg aug-uggcu- ---------- ---------- 5701 -------(uc cg----)--- ---------- ---------- ------gguc gugu-cgga- 5761 gua----ccg -gaaa-|gau -gcccaaacu ug-AUU-A-C UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS Por.crotal 5903 bp RNA RNA 11-JAN-191 DEFINITION Porocephalus crotali. ACCESSION No information KEYWORDS No information. SOURCE Porocephalus crotali. ORGANISM Porocephalus crotali. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: M29931 LOCUS POREAA 1830 bp ss-rRNA RNA 15-MAR-1990 DEFINITION P.crotali 18S rRNA. ACCESSION M29931 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE P.crotali ribosomal RNA. ORGANISM Porocephalus crotali Eukaryota; Animalia; Metazoa; Arthropoda; Pentastomida; Pentastomata; Porocephalida; Porocephaloidea; Porocephalidae. REFERENCE 1 (bases 1 to 1830) AUTHORS Abele,L.G., Kim,W. and Felgenhauer,B.E. TITLE Molecular evidence for inclusion of the phylum Pentastomida in the crustacea JOURNAL Mol. Biol. Evol. (1989) In press STANDARD full automatic COMMENT Draft entry and computer-readable sequence for [1] kindly submitted by L.G.Abele, 25-AUG-1989. FEATURES Location/Qualifiers rRNA 1..1830 /note="18S ribosomal RNA" source 1..1830 /organism="Porocephalus crotali" BASE COUNT 395 a 377 c 437 g 404 t 217 others ORIGIN BASE COUNT 395 a 377 c 437 g 404 t 4290 others ORIGIN 1 |--------- -----nnCCU GGU(UGA)UC CU|GCCAGC- C-GUCG-Unn --GCUUGUCU 61 CnAA|-GAUU nA-GCCAUGC n-UGUCU-nA GU|------- |--------- ----[----- 121 ncncgcc--- -------n-- ---------- ---------- aaacnaggcu aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CccU AAAU-cagu- ugu-gguu-- ----ccuuag 241 auua<----- ---------- ---------- ---------- ---------- uaaaaaauun 301 n>nnUUGG-A UAACUGUGG( -U-AAUU)CU AGAGCnnnnn nnnAUG---- ---------- 361 ---------- ---------- ---------- -- -gaaucuuuc -aa|gugucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(-UUAAGC G)CCU-ACnA U-|nGUUG-U CAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UnCC-ACAUn (nnnn-)nnn 1261 -GGCAGC-A- ---------| GGC-GC-Gn- nnAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GNU -|n|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUACGGG- -ACUC(---- ---aunu)GA GGCCC-nGUA A-UCGGAAU- 1501 ------GAGU ----ACAAUU -UAAA--UCC UUU---AA-C nA-GGAUC-- ----->CACU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAG 1621 U-AGCCUA|C AUUAA--AGC UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 ---------- ---------- ---------- ---------- ---------- -|-------< 1741 gaucuc---- --ggu-ucgu g-g-cg-guc gga-ccguc- -(uucgu--- ---------- 1801 ---------- )--gacgguu --uccagauc g-auccgaac agaaaua--- -----gc--- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -cgg--uu-- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug c-cuggcgau gcuc(uucnu 2161 c----)gag- ---------- ---------- -ugu--gugu cgng------ ---------- 2221 ---nnna--- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCCa ---------- ---------- ---------- ---------- 2521 --uagCGCCa cAAUAa-un- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAUcUCgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUnGU -UC-UC---- ------ggaa --cacG-AG- A-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGAA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GUCGC-nAG- A-CGGACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAAnGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUnG|UUC UA--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --gcaau-cc gcc-g-gcgu u---(---aa aaccgu---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -----gac-c c-gg-ugg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -AAGUG-uuu gGGU|-U|C- CGGGGGAAnn nn--nn-nn( --nnnn-)nn 3721 nnn-nnnnnn -nnnn--nnn -nnn|nn-nn -nn-nnnnn- -nnnn-nnnn ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --n-nn|-nn 4021 nnnnnnnn|n nn-nnnnnnn (nnnnnA-CA )CGGG--AAA CCUCACCAGG nC[cgg-aca 4081 ccgg-aagga nnnacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- nGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCCU-AA|- ---------- 4321 ------(--- --)[ccu-gc uaacuaggcg ac--ggaucu gcuuauagau accg-u---- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 -ucgucgauc u--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA------ ---c------ 5041 ---uuuca-g ccgc---acg AAAU-UGGG- CAAUAA--CA nGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-ANA-UGUU CUGG--CGGC A-CGCGCGCU ACAAU--G-A AGGAA----- ---------- 5281 ---------- -----[ucaa cgugugc--- ---------- ---------- ---------- 5341 ---------- ---------- ---------- ---------- ---------- ---------- 5401 --uccua--g ucc(gaaa-) ggacc----g ggnaauccgc -ugaac]--- ---------- 5461 -------CUC CUU-C-G--- UnCU-A-GGG AUUGGGGCU( UGGAAUUA)U UCCCCAnG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCnU CGCUAC-U-A CC-GAU--UG AA-Unnuuu- 5641 agu-gagg-c u--ucgga-c ugg-ugcc-u gug-uaggc- ---------- ---------- 5701 -------(uu ucu---)--- ---------- ---------- -----ugccc gcgc-ggag- 5761 cug----ccg -gana-|gau -ggcnnaacu ug-aun-n-n nnnn-nnnnn nn-nnnn-n- 5821 nnnnnnnnnn nn-------- -----n-n-n nnnnnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn~~~~~ ~~~~~~~~|| ||| // LOCUS Lineus.sp. 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X79878 D LS18SRR standard; DNA; INV; 1811 BP. XX AC X79878; XX DT 21-JUL-1995 (Rel. 44, Created) DT 24-JUL-1995 (Rel. 44, Last updated, Version 3) XX DE Lineus sp. 18S rRNA gene XX KW 18S ribosomal RNA. XX OS Lineus sp. OC Eukaryota; Animalia; Eumetazoa; Nemertea; Anopla; Heteronemertea; OC Lineidae. XX RN [1] RA Winnepenninckx B., Backeljau T., De Wachter R.; RT "Phylogeny of protostome worms derived from 18S rRNA sequences"; RL Mol. Biol. Evol. 12:641-649(1995). XX RN [2] RP 1-1811 RA Winnepenninckx B.M.H.; RT ; RL Submitted (27-JUN-1994) to the EMBL/GenBank/DDBJ databases. RL B.M.H. Winnepenninckx, Universitaire Instelling Antwerpen, (UIA), RL Dept. Biochemie, Universiteitsplein 1, 2610 Wilrijk, BELGIUM XX FH Key Location/Qualifiers FH FT source 1..1811 FT /organism="Lineus sp." FT rRNA <1..21 FT /product="18S ribosomal RNA" FT rRNA 22..>1811 FT /product="18S ribosomal RNA" FT /evidence=EXPERIMENTAL XX SQ Sequence 1811 BP; 458 A; 409 C; 485 G; 458 T; 1 other; BASE COUNT 458 a 409 c 485 g 458 t 4093 others ORIGIN 1 |--------- --------CU GGU(UGA)UU CU|GCCAGU- A-A-CA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac gaacu----u ---------- uuacacagug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AGAU-caru- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uccaaucu 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- gua-ucuuuc -aa|augucu gc|--CCU-A UCA--AAUUU C-GUAGGCC- 1141 GG(-UGAUAU G)CCC-GCCU A-|GUUUC-U UAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUUCU-A( ---gca--)C 1321 AGAG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa caauacggg- -acuc(---- ---uuuc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGC UGUUG-CAG| UUA--AAAAG UUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucucggau uuggg-cuag cgguc--cga ugucuucggu uu-------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ------acug cuagucucga cuacccgccg gucu-ucccc u--------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --ggugcucu 2161 u----aacu- ---------- ---------- -gagugccuc gggu------ ---------- 2221 ---uaccgga ac-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCGC UC-------- ---------- ---------- ---------- 2521 ----c-GCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---cucg-AG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|cgga ---------- 3001 --CGGGGGCA UU|--CGUAU UACGGUG-UU -AGAG(GU-G AAA---)UUC U-AGGA-U-C 3061 GCCGU-AAG- A-CGGACG-G CUGC(-GAAA )--GC|G--- UUUGCC-AA| GC-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------ACG ---UUUUCUU -UAG-U|CA- A-GAGCGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gcaau-cc gcc-g-gag- -------uug cuucaauga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-u c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUC-uuu GGGU|-U|C- CGGG-GAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugg-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AU UAAAUAGuuc a---ccgauc ac-ga---uu cg-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------uc ggugc--c-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-Agu-g -g-c(----- 5041 --aaacaa)g ccac---acg agaU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GC-GC A-CGCGCGCU ACACU--g-a aggaa----- ---------- 5281 ---(------ ----)[ucaa cgugcgucu- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --ucccu-gg ucc(gaga-) ggauu----g gguaac-ccg uugaac]--- ---------- 5461 -------cuc cuu-c-g--- UGCU-A-GGG AUUGGGGCU( UGUAAUUA)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug aa-ugguuu- 5641 agu-gaga-u ca-ucgga-u ugg-ucgc-g gcg-cguggg ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ----cccucg ugcc-guug- 5761 ucug---ccg -aaaa-|gac -gaucgaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUC---- 5881 --AUUA---- -------~|| ||| // LOCUS E.fetida 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X79872 ID EF18SRR standard; DNA; PLN; 1818 BP. XX AC X79872; XX DT 21-JUL-1995 (Rel. 44, Created) DT 24-JUL-1995 (Rel. 44, Last updated, Version 3) XX DE E.fetida 18S rRNA gene XX KW 18S ribosomal RNA. XX OS Eisenia fetida OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae; OC Laminariales; Alariaceae. XX RN [1] RA Winnepenninckx B., Backeljau T., De Wachter R.; RT "Phylogeny of protostome worms derived from 18S rRNA sequences"; RL Mol. Biol. Evol. 12:641-649(1995). XX RN [2] RP 1-1818 RA Winnepenninckx B.M.H.; RT ; RL Submitted (27-JUN-1994) to the EMBL/GenBank/DDBJ databases. RL B.M.H. Winnepenninckx, Universitaire Instelling Antwerpen, (UIA), RL Dept. Biochemie, Universiteitsplein 1, 2610 Wilrijk, BELGIUM XX FH Key Location/Qualifiers FH FT source 1..1818 FT /organism="Eisenia fetida" FT rRNA <1..>1818 FT /product="18S ribosomal RNA" FT /evidence=EXPERIMENTAL XX SQ Sequence 1818 BP; 453 A; 419 C; 499 G; 446 T; 1 other; BASE COUNT 453 a 419 c 499 g 446 t 4086 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GC|------- |-------(- ---)[----- 121 ---------- --------ac aaacc----u ---------- uuacacggug aa-]------ 181 -----|---G CU|G-CGAA- UGGCU-CAUU AGGC-cacc- cau-gauu-- ----ucuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacaaucc 301 u>ACUUGG-A UAACUGCGG( -U-AAUU)CU GGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- gua-ucuuuc -aa|gugugu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGAUAU G)CCU-ACCA U-|GGUAG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCC-G( ---aca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------aa caauacggg- -acuc(---- ---uuuu)ga ggccc-cgua a-uugGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U ACUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucucgggu cgugc-cgag cgguu--c-g cuucgcggcg gu-------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 -----acuuc ucggcncggc cuagccgccg gucuucgcuu ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --ggugcucu 2161 u----cguu- ---------- ---------- -gagugccuc gcgc------ ---------- 2221 ---ggccgac ag-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------AUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCGC UU-------- ---------- ---------- ---------- 2521 -----cGCUU GUAUAG-UC- GUGCAUGGAA -------|UA -AUGGAA-UA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-uAUU 2821 -UU-GUUGGU -UU-UC---- ------ggaa ---cuug-AG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -ggga|caga ---------- 3001 --CGGGGGCA UU|--CGUAU UACGGUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGU-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGUC GAC|UG|--- 3421 --gcgau-cc gcg-g-acg- -------ucg cuucuauga- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- -------c-c c-cg-cgg-g -c-agccu-- ---------- ----ucGG(- 3661 GAAA-)CCa- -aAGUC-uau GGAU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGGA-AAA CUCACUCGGC CC[gga-cua 4081 cugc-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGuuc ---gucgaug g-------ca cu-------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------cug ucggcgcu-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGU-g -g-c(----- 5041 ---guuca)g ucac---acg agaU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GC-GC A-CGCGCGCU ACACU--g-a aggag----- ---------- 5281 ---(------ ----)[ucaa cgugucugc- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 --uuccu-ga ucc(gaaa-) ggacc----g ggcaac-ccg augaac]--- ---------- 5461 -------uuc cuu-c-g--- UGCU-A-GGG AUUGGGGCU( UGUAAUUC)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--ug ga-ugguuu- 5641 agu-gaga-u cc-ucgga-u ugg-accc-g gcc-cggagg ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ------ccuu cggg-ucgg- 5761 ugau---ccg -aaaa-|gac -gaucaaacu ug-auc-a-u cuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUC---- 5881 --AUUA---- -------~|| ||| // LOCUS A.japonica 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X70210 ID AJ18S standard; DNA; INV; 1817 BP. XX AC X70210; XX DT 21-APR-1993 (Rel. 35, Created) DT 21-APR-1993 (Rel. 35, Last updated, Version 2) XX DE A.japonica DNA for 18S rRNA XX KW 18S ribosomal RNA; ribosomal RNA. XX OS Acanthopleura japonica OC Eukaryota; Animalia; Eumetazoa; Mollusca; Polyplacophora. XX RN [1] RP 1-1817 RA Winnepenninckx B.M.H.; RT ; RL Submitted (18-DEC-1992) on tape to the EMBL Data Library by: RL B.M.H. Winnepenninckx, Universitaire Instelling Antwerpen, Dept RL Biochemie, Universiteitsplein 1, 2610 Wilrijk, BELGIUM XX RN [2] RP 1-1817 RA Winnepenninckx B., Backeljau T., De Wachter R.; RT "Complete small ribosomal subunit RNA sequence of the chiton RT Acanthopleura japonica (Lischke,1873) (Mollusca, Polyplacophora)"; RL Nucleic Acids Res. 21:1670-1670(1993). XX FH Key Location/Qualifiers FH FT source 1..1817 FT /organism="Acanthopleura japonica" FT rRNA <1..>1817 FT /product="18S ribosomal RNA" XX SQ Sequence 1817 BP; 449 A; 406 C; 498 G; 462 T; 2 other; BASE COUNT 449 a 406 c 498 g 462 t 4088 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac agacu--uuc ---------- -ac-auagug aa-]------ 181 -----|---A CC|G-CAAA- UGGCU-CAUU AAAU-cagu- uau-gauu-- ----ucuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uacacucc 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucuuuc -aa|gugucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 CG(-UGAUAU G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGA|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCU-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -AUCU(---- ---cuuc)GA GGCCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUU -UAAA--UCC UUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-uuca ggcug--g-a g-gu-ccgcc ucgcggcg-- ---------- 1801 ---------- -gcu-acuuc c-cgc-uccu g-accuacca u-c------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ------GGGU 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------UU U-CCCUUGGU GCUC(UUGAC 2161 U----)GAG- ---------- ---------- -UGUC-UC-G -GGG------ ---------- 2221 ---GGCCAGA AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCCC C--------- ---------- ---------- ---------- 2521 ---GUCGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-GA -GGAcCucgg 2581 uuc------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ----|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-AGUCGAG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UACGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGU-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUCAGAGGU- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UUC UG--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gcgau-cc gcc-gga-gu ug--(----u uucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugacuc g-gc-ggg-c -a-gcuu--- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUU-ugu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--AAA ACUCACCCGG CC[cgg-aca 4081 cugu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AU UAAAUAGUuc g--ccgaucc ---------- --cu-gau-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------gcg ucggcgcc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----a-acu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Agu-g -g-c(----- 5041 --guuua-)g ccac---acg AAAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---(------ ----)[ucag cgugugu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 cguuccu-gg ccc(ggaa-) gggcu----g gguaacccgu -ugaac]--- ---------- 5461 -------cuc cuu-c-g--- UGCU-A-GGG AUUGGGGCU( UGUAAUUC)U UCCCCAUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGM-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gaga-g cc-ccgga-u ugg-uccc-g gcaugggg-- ---------- ---------- 5701 -------(gn aa----)--- ---------- ---------- -------ccu cc-g-ccgg- 5761 ugcg---ccg -agaa-|guu -guucgaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS B.plicatil 5903 bp RNA RNA 02-OCT-1995 DEFINITION Brachionus plicatilis.; . ACCESSION U29235 KEYWORDS . SOURCE Brachionus plicatilis. ORGANISM Brachionus plicatilis. REFERENCE 1 (bases 1 to 1736) AUTHORS Winnepenninckx.,B., Backeljau,T., Mackey,L.Y., Brooks,J.M., De Wachter,R., Kumar,S. and Garey,J.R. TITLE 18S rRNA data indicate that aschelminthes are polyphyletic in origin and consist of at least three distinct clades JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 (bases 1 to 1736) AUTHORS Winnepenninckx.,B., Backeljau,T., Mackey,L.Y., Brooks,J.M. , De Wachter,R., Kumar,S. and Garey,J.R. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) James R. Garey, Biology, Duquesne University, 600 Forbes Ave., Pittsburgh, PA 15282, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: U29235 NCBI gi: 1002600 BASE COUNT 460 a 347 c 465 g 464 t 4167 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nnnn|-nnnn nn-nnnAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac aua--ccuua ---------- -gc-acggug aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- uuca---uac 301 u>ACAUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -guaucuuuc -aa|gugucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-CGAUUU G)CCU-ACCA U-|GGUUG-U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (UACG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCU-A( ---gaa--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACCGG- -acuc(---- ----aau)ga ggcUC-GGUA A-UUGAAAU- 1501 ------GAGU ----ACAGUU -UAAA--ACC CUU---AA-C GA-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-uacu agcau--gug g-ua-cgcuu uuuu-gcu-- ---------- 1801 ---------- -guu--acua caugu-cugg uccuaauc-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --aac-cggu 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ug g-ccguugau gucc(uuuau 2161 u----)ggg- ---------- ---------- -uguu-uucg gu-a------ ---------- 2221 ---gccggua c--------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AGA A--AAUUAGA 2461 GUGCUUAA-A G--CAGCCUU ---------- ---------- ---------- ---------- 2521 ----aAGCCU GAAUAA-UG- UUGCAUGGAA -------|UA -AUAGAA-UA -GGA----cc 2581 ucgg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-UGU--- ---AG-AG-- -C-AUU-GAG G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGGUG-UU -AGAG(GU-G AAA---)UUC U-UGGA-U-C 3061 GCCGC-AAG- A-CGAACA-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUGGAGGU- UCGAAGACG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CCUAG|UUC CA--ACC-AU AAACGAUGCC AAC|UA|--- 3421 --gcgau-ua gcu-g-c-ug uuau(----- uuuu-----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---acgac-a c-ag-cua-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aaGUU-uuu GGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AAGGGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 UAGCCUGC|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA UCUCACCCGG CC[cgg-aca 4081 cugu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGGA U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUAc g-----ucga u--------- -cuu-ua--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- --------gu cggguggg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----ua-CU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-AGU-A -G-C(----- 5041 --gguaa-)G CUAC---acg AAAU-UGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GGCAU A-CGCGCGCU ACACU--G-A AGGGA----- ---------- 5281 ---(------ ----)[uaag cguguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuccug--c ucc(gaaa-) ggagu----g gguaauccgc -ugaaa]--- ---------- 5461 --------cc cuu-c-g--- UGAU-U-GGG AUCGGGGCU( UGAAAUUA)U UCUCCGUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CGC-GAG (-UCAUAAG- )CUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gaga-u cu-ucgga-u ugg-uccg-g aggugucc-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- -------ggu cgcc-ucua- 5761 ggug---ccg -agaa-|gau -gaucaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAnn(nnn n)nnnnnnnn nnnnnnn--- 5881 --nnn----- -------~|| ||| // LOCUS A.unguicul 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10823 LOCUS AHCSSRRNA 1780 bp ss-rRNA RNA 11-FEB-1993 DEFINITION Acanthocoepsis unguiculata 16S-like small subunit ribosomal RNA. ACCESSION L10823 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Acanthocoepsis unguiculata rRNA. ORGANISM Acanthocoepsis unguiculata Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Zoomastigophora; Choanoflagellida; Acanthoecidae. REFERENCE 1 (bases 1 to 1780) AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi JOURNAL Science (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1780 /product="small subunit ribosomal RNA" BASE COUNT 480 a 340 c 458 g 500 t 2 others ORIGIN BASE COUNT 480 a 340 c 458 g 500 t 4125 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaauagcuuu ---------- -gu-acugug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- ug-uu--uac 301 u>ACAUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GACGGUA- 1141 GG(-GUAUUG G)CCU-ACCG U-|GGUUG-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-ARCC(U-G AGAGAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGA- -Gccu(---- ---uuua)-g g-uuu-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCU CUU---AA-C GA-GUAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc---- --ugg-ugaa gcugg--ggu g-gu-ccacc gcaa-ggu-- ---------- 1801 ---------- -gag-cacug c-ucu-gguu cgccauc--- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- --cuc-ucgg 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------ag g-cggcuagu gcca(uuaac 2161 u----)ugg- ---------- ---------- -ugcu-uguc gugg------ ---------- 2221 ---ccgggac ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------CUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCU- ---------- ---------- ---------- ---------- 2521 ---uacgcuU GAAUAC-AU- UAGCAUGGAA -------|UA -AUGGAA-UA -GGA----cu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- ------AG-- -G-ACC-GAA G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --aggau-ca ucg-a-g-gu ----(----c auuuua---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------gc-c a-cg-gug-g -c-acugu-- ---------- ----auGA(- 3661 GAAA-)UCa- -aaGUU-Uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|- CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugauagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(YU-AA UU)CCGUUA- AC-GAACGAG ACCUU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUA c----gcgaa u--------- --uc-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------auu -cgugggc-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUC-G -a-u(----- 5041 --guuua-)a ucga-uggaa guuu-GAGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAGGG----- ---------- 5281 ---(------ ----)[ccaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------a 5401 uaaccug--c gcc(ggua-) ggugu----g gguaau-cuu uugaga]--- ---------- 5461 -------ccu ugu-c-g--- UGUU-G-GGG CUAGAUCUU( UGUAAUUU)U CGAUCUCA-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAU (-UCAUCAG- )AUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gaga-u cu-cggga-c ugg-cuug-c uacggcug-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---------c agcc-cagc- 5761 uug----ccg -ggaa-|ccu -gcucaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS D.grandis 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: L10824 LOCUS DPHSSRRNA 1794 bp ss-rRNA RNA 11-FEB-1993 DEFINITION Diaphanoeca grandis 16S-like small subunit ribosomal RNA. ACCESSION L10824 KEYWORDS 16S-like ribosomal RNA; protist; small subunit ribosomal RNA. SOURCE Diaphanoeca grandis rRNA. ORGANISM Diaphanoeca grandis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Zoomastigophora; Choanoflagellida; Acanthoecidae. REFERENCE 1 (bases 1 to 1794) AUTHORS Wainright,P.O., Hinkle,G., Sogin,M.L. and Stickel,S.K. TITLE The monophyletic origins of the metazoa; an unexpected evolutionary link with fungi JOURNAL Science (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA 1..1794 /product="small subunit ribosomal RNA" BASE COUNT 490 a 327 c 461 g 510 t 6 others ORIGIN BASE COUNT 490 a 327 c 461 g 510 t 4115 others ORIGIN 1 |--------- -----AACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------au aaaugacuuu ---------- -au-acagug aa-]------ 181 -----|---A CU|G-CGAA- UGGCU-CAUU AAAU-cagu- uau-aguu-- ----uauuug 241 auag<----- ---------- ---------- ---------- ---------- ua-cu--uac 301 u>ACUUGG-A UAACCGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gaaucauuc -aa|auuucu gc|--CCU-A UCA--ACUUU C-GAUGGUA- 1141 AG(-GUAGUG G)CUU-ACCA U-|GGUUG-C AAC|GGGU-A A-CGGA|GAA -U-(UAGG-) 1201 GUU-CGAUU- CCG|GAGAGG G-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -AAUCCU-G( ---aca--)C 1321 AGGG-A-GGU -|A|GUGACA AUAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACAGG- -Gccu(---- ---uuua)-g g-uuu-UGUA A-UUGGAAU- 1501 ------GAGU ----ACAAUC -UAAA--UCU CUU---AA-C GA-GUAAC-- ----->AAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CAG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gauuuc---- --ugu-uacu ggagg--ggu g-gu-ccgcc ucac-ggc-- ---------- 1801 ---------- -gag-cacug c-uau-ccuc ugugacaucc ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -ucuc-aaag 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------uu u-uagcgggu gcac(uuagu 2161 u----)gug- ---------- ---------- -uggc-ugku gaau------ ---------- 2221 ---uugggau ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------SUUU ACUUUG-AAA A--AAUUAGA 2461 GUGUUCAA-A G--CAGGCUa ---------- ---------- ---------- ---------- 2521 ---uuugcuU GAAUAU-AU- UAGCAUGGAA -------|UA -AUGGAA-UA -GGA----cu 2581 uugg------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uuc|-UAUU 2821 -UU-GUUGGU -UU-CU---- ------AG-- -G-ACU-GAA G-UAA-UGAU UAAUA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGU ---------- 3001 --UGGGGGCA UU|--AGUAU UUAAUUG-UC -AGAG(GU-G AAA---)UUC U-UGGA-U-U 3061 UAUGA-AAG- A-CUAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCRU -UAA-U|CA- A-GAACGAAA 3301 GUUAGGGGA- UCGAAGACG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-U -CGUAG|UCU UA--ACC-AU AAACUAUGCC GAC|UC|--- 3421 --gggau-cg gug-u-g-gu ----(----g aaauua---) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ------gc-c g-ca-ucg-g -c-accgu-- ---------- ----auGA(- 3661 GAAA-)UCa- -aaGUU-Uuu GGGU|-U|C- UGGGGGGAGU AU--GG-UC( --GCAA-)GG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA ACUCACCAGG UC[cag-aca 4081 uagu-aagga uugacaga(u ugagagc)-- --ucuuucuu gauu-cuaug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(-GUG 4261 A-)UUUGUC- -UGG(UU-AA UU)CCGUUA- AC-GAACGAG ACCWU-AA|- ---------- 4321 ------(--- --)[CCU-GC UAAAUAGUUA c----acgau a--------- --uu-cg--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -------uau -gguggac-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----aa-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACU-AUC-G -g-u(----- 5041 --guuua-)a ccga-uggaa guuu-GAGG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CUGG-GCCGC A-CGCGCGCU ACACU--G-A CAAGG----- ---------- 5281 ---(------ ----)[acaa cgaguuu--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------a 5401 uaaccuu--c acc(ggua-) ggugcc--ug gguaau-cuu uugagc]--- ---------- 5461 -------ccu ugy-c-g--- UGCU-G-GGG CUAGAUCUU( UGUAAUUU)U CGAUCUUC-A 5521 ACGAGG-AAU U--CCUAGUA AG-CGU-GAU (-UCAUCAG- )AUCGC-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGGUuu- 5641 agu-gaga-u uu-uggga-c uga-cacg-g guagguug-- ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- --------ca accc-gccu- 5761 gag----uug -ggaa-|cuu -gcucaaacu ug-AUC-A-U UUAG-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCAGA AGGAUCA--- 5881 --A~~~~~~~ ~~~~~~~~|| ||| // LOCUS Aphonop.sp 5903 bp RNA RNA 11-JAN-191 DEFINITION Aphonopelma sp.. ACCESSION No information KEYWORDS No information. SOURCE Aphonopelma sp. ORGANISM Aphonopelma sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: X13457 Eurypelma californica BASE COUNT 456 a 420 c 489 g 449 t 4089 others ORIGIN 1 |--------- -----UACCU GGU(UGA)UC CU|GCCAGU- A-GUCA-UAU --GCUUGUCU 61 CAAA|-GAUU AA-GCCAUGC A-UGUCU-AA GU|------- |-------(- ---)[----- 121 ---------- --------ac augcc--ucc ---------- -uu-aaggcg aa-]------ 181 -----|---A CC|G-CGAA- UGGCU-CAUU AAAu-cagu- uau-gguu-- ----ccuuag 241 aucg<----- ---------- ---------- ---------- ---------- --uaccuuac 301 u>ACUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -gcaucuuuc -aa|gugucu gc|--CUU-A UCA--ACUGU C-GAUGGUA- 1141 GG(CUUAUGC G)CCU-ACCA U-|GGUC--U AAC|GGGU-A A-CGGG|GAA -U-(CAGG-) 1201 GUU-CGAUU- CCG|GAGAGG C-AGCC(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-GC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AAAA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CAAUACGGG- -ACUC(---- ---uuuu)GA GACCC-CGUA A-UUGGAAU- 1501 ------GAGU ----ACACUC -UAAA--UCC UUU---AA-C -A-GGAUC-- ----->UAUU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAA 1621 U-AGCGUA|U AUUAA--AGU UGUUG-CGG| UUA--AAAAG CUCGUAGUUG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --agu-ucca gacgg--g-c g-gu-ccgcc uaacggug-- ---------- 1801 ---------- -guu-acugc c-ug--gccu g-aacagccc a-gc------ ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ------CGGU 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- --------UU --CCCUAGAU GAUC(UUCAC 2161 C----)GGU- ---------- ---------- -UGUC-CU-G -GGU------ ---------- 2221 ---GACCGGC AC-------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACUUUG-AAA A--AAUUAGA 2461 GUGCUCAA-A G--CAGGCGU ---------- ---------- ---------- ---------- 2521 ---GUAGCCU GAAUAA-UG- GUGCAUGGAA -------|UA -AUGGAA-UA -GGA----cu 2581 ucgu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- -uUC|-UAUU 2821 -UU-GUUGGU -UU-UC---- ------GG-- -A-AUACGAG G-UAA-UGAU UAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGGA|CAGA ---------- 3001 --CGGGGGCA UU|--CGUAU UGCGACG-CU -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 GUCGC-AAG- A-CGAACU-A CUGC(-GAAA )--GC|A--- UUUGCC-AA| GA-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUUCAU -UAA-U|CA- A-GAACGAAA 3301 GUUAGAGGU- UCGAAGGCG( AUCA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CG-C -CCUAG|UUC UA--ACC-AU AAACGAUGCC AAC|CA|--- 3421 --gcgau-cc gcc-u-g-ag uu--(----c cucaa----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---augac-u c-gg-cgg-g -c-agcuu-- ---------- ----ccGG(- 3661 GAAA-)CCa- -aAGUG-uuu gGGU|-U|C- CGGGGGAAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--AAA CCUUACCCGG CC[cgg-aca 4081 cugg-aagga uugacaga(u uaagagc)-- --ucuuucuu gauu-cagug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC AUA|GUUGG- U|GGA(-GCG 4261 A-)UUUGUC- -UGG(UU-UA UU)CCGAUA- AC-GAACGAG ACUCU-AG|- ---------- 4321 ------(--- --)[CCU-AC UAAAUAGGcg u--cccgauc a--------- --cu-uc--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------u gucgggcg-- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ----u-UCU- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------UCUU AGAGG]---- --|------- ---------- GACA-Aau-g -g-c(----- 5041 --guuua-)g ccgc---acg AGAC-AGAG- CAAUAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-AG A|UGCC|CU- 5221 U-AGA-UGUC CGGG-GCCGC A-CGCGCGCU ACACU--G-A AGGAA----- ---------- 5281 ---(------ ----)[ucag cgugugc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- ---------- ---------- 5401 -uuuccc-ug ucc(ggua-) ggacu----g gguaacccgu -ucaac]--- ---------- 5461 -------cuc cuu-c-g--- UGAU-A-GGG AUAGGGGCU( UGUAAUUG)U UCCCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA AG-CAC-GAG (-UCAUAAG- )CUCGU-G-U -UGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--UG AA-UGAuuu- 5641 agu-gagg-u cu-ucgga-u ugg-cgcu-c gga-gcggcc ---------- ---------- 5701 -------(gc aa----)--- ---------- ---------- ---ggucgcg ccgg-cgug- 5761 ccg----gaa -agcg-|auu -gaccaaacu ug-auc-a-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| // LOCUS S.elegans 5903 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5903) Corresponding GenBank entry: Z19551 ID SE18SRRN standard; DNA; INV; 1914 BP. XX AC Z19551; XX DT 13-JAN-1993 (Rel. 34, Created) DT 13-JAN-1993 (Rel. 34, Last updated, Version 1) XX DE S.elegans gene encoding 18S ribosomal RNA XX KW 18S ribosomal RNA. XX OS Sagitta elegans OC Eukaryota; Animalia; Chaetognatha. XX RN [1] RP 1-1914 RA Telford M.J., Bone Q., Holland P.W.H.; RT "The phylogenetic affinities of the chaetognaths: A molecular RT analysis."; RL Unpublished. XX RN [2] RP 1-1914 RA Telford M.J.; RT ; RL Submitted (12-JAN-1993) on tape to the EMBL Data Library by: RL Telford M. J., Oxford University, Zoology, South Parks Road, RL Oxford, Oxon, U.K., OX1 3PS XX CC *source: stage=adult; CC *source: sex=Hermaphrodite; XX FH Key Location/Qualifiers FH FT rRNA <1..>1914 FT /partial FT /function= "ribosomal RNA" FT /product= "18S ribosomal RNA" FT /standard_name= "small subunit rRNA" FT /citation= ([1]) XX SQ Sequence 1914 BP; 419 A; 493 C; 579 G; 417 T; 6 other; BASE COUNT 419 a 493 c 579 g 417 t 3995 others ORIGIN 1 |--------- -----nnnnn nnn(nnn)nn nn|nnnnnn- n-nnnn-nnn --nnnnnnnn 61 nAAA|-GAUU AA-GCCAUGC A-AGUGU-ca gc|------- |-------(- ---)[----- 121 ---------- --------ac augccg--cc ---------- -aa-auggcu aa-]------ 181 -----|---G CC|G-CGAA- CGGCU-CAUU AAAu-cagc- uau-gguu-- ----ccuuag 241 aucu<----- ---------- ------ucgg ccgcguccuc ggacguggc- ---------- 301 ->GUUUGG-A UAACUGUGG( -U-AAUU)CU AGAGC-UAA- UACAUG---- ----(----) 361 ---------- -------(-- --)--|---- -- -ugaucuaau -aa|augucu gc|--CUU-A UCA--ACUGU C-GACGGUA- 1141 GG(-AGCCCG G)CCU-ACCG U-|GGUGA-U AAC|GGGU-A G-CGGG|GAA -U-(AAGG-) 1201 GUU-CUAUA- CCG|GAGAGG G-AGCA(U-G AGAAAC)GGC UACC-ACAUC (CAAG-)GAA 1261 -GGCAGC-A- ---------| GGC-AC-GC- AAAUU-ACCC -ACUCCC-G( ---gca--)C 1321 GGGG-A-GGU -|A|GUGACG AUCA-AU--- ---------- -(----)--- ---------- 1381 |----|---- ---------- --------(- ------)--- ---------- ---------- 1441 --------AA CGAUGCGGG- -ACUC(---- ---ugac)GA GGCUC-CGUA A-UCGGAAU- 1501 ------GGGC ----GUAAUU -UAAA--UCC UUC---GA-C GA-GGAUC-- ----->AAGU 1561 GGAG|GG-CA A-GU-C-UGG U-G(CCA-GC -AGCC|GC-G GU-AA)UUCC AG-|CUCCAC 1621 U-AGCGUA|U AUUAA--AGU UGCUG-CAG| UUA--AAAAG CUCGUAGUCG |--------- 1681 -|-------- ---------- --(-----)- ---------- ---------- -|-------< 1741 gaucuc---- --ggg-aucg ugucg--g-c g-ucuuuguu gcuucuuc-- ---------- 1801 ---------- --ug-cguuu c-g---gcgu cggaguugug g-caggu--- -----cgucg 1861 gcccugucgg cgagguccca ccuuuggugg gunuccaccu cgcucgugc- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 agcccgccgu cgcguuuggg c--------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- --gggugucc uuaa--uugg 2161 a----u-gc- ---------- ---------- -ccg--cucu c--g------ ---------- 2221 ---aacgugg ccc------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ------GUUU ACCUUG-AAC A--AAUCGGA 2461 GUGCUCAA-A G--CAGGCUc u--------- ---------- ---------- ---------- 2521 -ucaucgcuc gAACGG-UA- GCGCAUGGAA -------|UA -AUGGAA-GA -GGA----cc 2581 ggcu------ ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- --UC|-CGCU 2821 -UC-UGUUGG -UC-UC---- ------ac-- -g-gaggcAG G-UAA-UGAU CAAGA>---- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- -GGUA|CGGA ---------- 3001 --UGGGGGCA GA|--gGUAU GGCUCGG-CG -AGAG(GU-G AAA---)UUC U-UGGA-C-C 3061 CUAGC-CAG- A-CCCUCG-A GAGC(-GAAA )--GC|A--- UCUGCC-AA| AG-----(-- 3121 --)------- ---------- -|-------- ---|------ ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- -------AUG ---UUUCCAU -UGA-U|CA- A-GAACGAAA 3301 GUCGCGGGA- UCGAACGGG( AUUA------ ---------- ---------- ---------- 3361 ---------- GAUAC)CC-C -GGUAG|UCG CG--ACC-GU AAACGAUGCC AAC|CG|--- 3421 --ggaau-uc ggc-g-gcgu ua--(----c uucca----) ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ----ugac-c c-gu-cga-g -c-gccc--- ---------- -gacccGG(- 3661 GAAA-)CCga -gAGUC-uuu GGGU|-U|C- CGGGGGGAGU AU--GG-UU( --GCAA-)AG 3721 CUG-AAACUU -AAAG--GAA -UUG|AC-GG -AA-GGGCA- -CCAC-CAGG ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --A-GU|-GG 4021 AGCCUGCG|G CU-UAAUUUG (ACUCAA-CA )CGGG--GAA CCUCACCCGG CC[cgg-aca 4081 ccgc-gagga uugacaga(c ugagagc)-- --ucuuucuc gauu-cggug gg-----]-- 4141 ---------- -]-------- |--------- -----(---- )--------- ---(----)- 4201 ---|------ ---|UG-GU- GGU-G-CAUG |GCC|GU-UC UUA|GUUGG- U|GGA(--CG 4261 A-)UCUGUC- -UGG(UU-AA UU)CCGAUA- AC-GAACGAG ACCCC-AA|- ---------- 4321 ------(--- --)[CCu-gc uaacuagccc u--cgggucc ugcuucuguu g-gg-cc--- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- -cgacggaau gauuc----- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- -----g-cu- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ------ucuu agagg]---- --|------- ---------- GACU-Cgc-g -g-c(----- 5041 --gncua-)g ccgc---acg aagg-gggg- ngauAA--CA GGU------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ----CUG-UG A|UGCC|CU- 5221 U-AGA-UGUU CGGG-GCUGC A-CGCGCGCU ACACU--G-A AGGCA----- ---------- 5281 ---(------ ----)[ucag cgwgcgc--- ---------- ---------- ---------- 5341 ---------- ---------( -----)---- ---------- -------uuu gucc------ 5401 guucccu--g ccu(gaaa-) aggcu----g gguaacccgc -ugaac]--- ---------- 5461 -------cgc cuu-c-g--- UGCC-U-GGG AUAGGGAUU( UGCAAUUA)U CUCCCUUG-A 5521 ACGAGG-AAU U--CCCAGUA GG-CGC-GAG (-UCAUCAG- )CKCGC-G-U -CGAUUACG- 5581 U-CCCUGCCC UU|UGUA-CA CACCGCCCGU CGCUAC-U-A CC-GAU--Cg aa-cgaugu- 5641 agu-gagg-u cc-ucgga-c ugg-caug-u acu-cggaag ccggg----- ---------- 5701 -------(uu cg----)--- ---------- ---------- cucgguagaa gagc-uugu- 5761 uug----ccg -ggaa-|gag -aaccaaacu ga-auc-g-u uuag-AGGAA GU-AAAA-G- 5821 UCGUAACAAG GU-------- -----U-U-C CGUAGG(UGA A)CCUGCGGA AGGAUCA--- 5881 --UUA~~~~~ ~~~~~~~~|| ||| //